Multiple sequence alignment - TraesCS7D01G307000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G307000 chr7D 100.000 3211 0 0 1 3211 388962723 388965933 0.000000e+00 5930
1 TraesCS7D01G307000 chr7D 90.594 202 18 1 2930 3130 13470109 13469908 1.900000e-67 267
2 TraesCS7D01G307000 chr7D 81.388 317 32 13 2896 3210 35946375 35946666 1.930000e-57 233
3 TraesCS7D01G307000 chr7B 95.245 1472 30 10 121 1563 384094405 384095865 0.000000e+00 2294
4 TraesCS7D01G307000 chr7B 94.686 1355 41 14 1564 2902 384095897 384097236 0.000000e+00 2074
5 TraesCS7D01G307000 chr7B 82.857 140 15 6 1 135 384094251 384094386 2.020000e-22 117
6 TraesCS7D01G307000 chr7A 94.985 1376 28 8 1564 2902 439576150 439577521 0.000000e+00 2121
7 TraesCS7D01G307000 chr7A 95.709 536 21 1 624 1157 439575169 439575704 0.000000e+00 861
8 TraesCS7D01G307000 chr7A 90.854 328 21 5 1 323 439573936 439574259 6.360000e-117 431
9 TraesCS7D01G307000 chr7A 87.461 319 31 6 2899 3211 316541500 316541185 3.050000e-95 359
10 TraesCS7D01G307000 chr7A 82.266 406 42 11 1160 1563 439575741 439576118 1.110000e-84 324
11 TraesCS7D01G307000 chr7A 98.266 173 1 2 472 644 439574981 439575151 5.210000e-78 302
12 TraesCS7D01G307000 chr7A 100.000 97 0 0 308 404 439574719 439574815 2.550000e-41 180
13 TraesCS7D01G307000 chr4D 88.679 318 31 5 2897 3211 479407345 479407660 1.810000e-102 383
14 TraesCS7D01G307000 chr5D 91.241 274 21 2 2894 3166 455610383 455610654 1.410000e-98 370
15 TraesCS7D01G307000 chr2D 87.838 296 31 4 2899 3192 306337786 306337494 3.070000e-90 342
16 TraesCS7D01G307000 chr6D 86.943 314 20 3 2899 3211 290813548 290813255 1.850000e-87 333
17 TraesCS7D01G307000 chr1A 90.171 234 19 3 2900 3130 533262990 533262758 5.210000e-78 302
18 TraesCS7D01G307000 chr2A 86.992 246 31 1 2896 3140 599777274 599777519 3.160000e-70 276
19 TraesCS7D01G307000 chr1D 88.406 207 23 1 2905 3110 447063524 447063318 6.880000e-62 248
20 TraesCS7D01G307000 chr1D 80.000 315 33 6 2899 3210 252544555 252544268 4.200000e-49 206
21 TraesCS7D01G307000 chr5B 80.317 315 38 9 2897 3210 401675349 401675058 1.940000e-52 217
22 TraesCS7D01G307000 chr5B 88.506 87 9 1 327 413 466975383 466975468 1.580000e-18 104
23 TraesCS7D01G307000 chr6B 88.652 141 15 1 3071 3210 14253494 14253354 1.530000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G307000 chr7D 388962723 388965933 3210 False 5930.000000 5930 100.000000 1 3211 1 chr7D.!!$F2 3210
1 TraesCS7D01G307000 chr7B 384094251 384097236 2985 False 1495.000000 2294 90.929333 1 2902 3 chr7B.!!$F1 2901
2 TraesCS7D01G307000 chr7A 439573936 439577521 3585 False 703.166667 2121 93.680000 1 2902 6 chr7A.!!$F1 2901

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 1.364269 AACCGGTGTTAGGGGATCAA 58.636 50.0 8.52 0.0 31.36 2.57 F
1204 1904 0.038744 AGTCATGTTTCCTGGGCTGG 59.961 55.0 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1583 2318 1.217882 GGACCGCACAAATATCTCCG 58.782 55.0 0.0 0.0 0.0 4.63 R
2939 3722 0.028374 AAACGGACAAAAAGCGGACG 59.972 50.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.258622 AGGTGTCGGTTAGAGGAGAAAAG 59.741 47.826 0.00 0.00 0.00 2.27
40 41 3.006644 GGTGTCGGTTAGAGGAGAAAAGT 59.993 47.826 0.00 0.00 0.00 2.66
42 43 3.893200 TGTCGGTTAGAGGAGAAAAGTCA 59.107 43.478 0.00 0.00 0.00 3.41
44 45 5.163385 TGTCGGTTAGAGGAGAAAAGTCAAA 60.163 40.000 0.00 0.00 0.00 2.69
45 46 5.932883 GTCGGTTAGAGGAGAAAAGTCAAAT 59.067 40.000 0.00 0.00 0.00 2.32
78 79 1.364269 AACCGGTGTTAGGGGATCAA 58.636 50.000 8.52 0.00 31.36 2.57
122 128 9.362539 GACTAGGAGTAACAATAACGAATTCAA 57.637 33.333 6.22 0.00 0.00 2.69
153 192 2.235891 GGTTGGTTAGTTGGGACTTGG 58.764 52.381 0.00 0.00 37.33 3.61
404 919 4.580580 AGAGAAACGAACCAAAGCAATCTT 59.419 37.500 0.00 0.00 0.00 2.40
694 1343 3.057547 CTCCCACGCACCTCTCTCG 62.058 68.421 0.00 0.00 0.00 4.04
750 1399 3.191371 GGGTTCTTTGCTTGGTATGTCTG 59.809 47.826 0.00 0.00 0.00 3.51
791 1440 5.929058 AGATCGATATGATGTAGGCATGT 57.071 39.130 0.00 0.00 37.47 3.21
792 1441 5.658468 AGATCGATATGATGTAGGCATGTG 58.342 41.667 0.00 0.00 37.47 3.21
816 1469 2.825532 TGCCAGGAAAAACAATAGGAGC 59.174 45.455 0.00 0.00 0.00 4.70
888 1544 6.484308 TGATGCATGCATGGCTACATATATAC 59.516 38.462 36.73 17.12 36.70 1.47
900 1556 8.967918 TGGCTACATATATACTTGTACTGATCC 58.032 37.037 0.00 0.00 0.00 3.36
1099 1765 1.005037 CTGGTGCTCTACAACCGCA 60.005 57.895 0.00 0.00 33.78 5.69
1204 1904 0.038744 AGTCATGTTTCCTGGGCTGG 59.961 55.000 0.00 0.00 0.00 4.85
1583 2318 2.151202 TCCCGCACAAAGAATCAGTTC 58.849 47.619 0.00 0.00 34.46 3.01
1597 2334 5.525378 AGAATCAGTTCGGAGATATTTGTGC 59.475 40.000 0.00 0.00 39.38 4.57
1614 2351 0.323302 TGCGGTCCAAAGCTACATGA 59.677 50.000 0.00 0.00 0.00 3.07
1777 2520 7.953158 AATAGTAGACGATTAGCTACGTACA 57.047 36.000 9.15 0.00 42.74 2.90
1814 2557 5.105635 GCATTCAAATTCTCTGGACCATTCA 60.106 40.000 0.00 0.00 0.00 2.57
2089 2865 5.710099 GCCTCATCTCTAGCTAACACTCTAT 59.290 44.000 0.00 0.00 0.00 1.98
2105 2881 8.794335 AACACTCTATCAAAACCCTCTATTTC 57.206 34.615 0.00 0.00 0.00 2.17
2106 2882 7.042335 ACACTCTATCAAAACCCTCTATTTCG 58.958 38.462 0.00 0.00 0.00 3.46
2195 2972 4.295119 GTGGCGGTCGGTGTCACT 62.295 66.667 2.35 0.00 0.00 3.41
2529 3309 8.922931 AAAAAGCATTATGTCCAGGAATTTTT 57.077 26.923 0.00 0.00 0.00 1.94
2637 3417 0.106015 ACTTTGCACTTGGGGCTCTT 60.106 50.000 0.00 0.00 0.00 2.85
2690 3470 3.181493 GCAGCAAAAAGATGATGACGGAT 60.181 43.478 0.00 0.00 38.99 4.18
2769 3551 4.451150 CCAGCGCCGGCAGTTCTA 62.451 66.667 28.98 0.00 43.41 2.10
2811 3593 2.443255 CCCATGGATAACACTAGGGCTT 59.557 50.000 15.22 0.00 33.78 4.35
2840 3622 7.458409 TCTACAGTTACAGTACAAACCCTAG 57.542 40.000 0.00 0.00 0.00 3.02
2841 3623 7.006509 TCTACAGTTACAGTACAAACCCTAGT 58.993 38.462 0.00 0.00 0.00 2.57
2894 3677 0.333993 AGTGAATCAGGCCAGCCAAT 59.666 50.000 12.03 0.90 38.92 3.16
2902 3685 0.259647 AGGCCAGCCAATGCATAAGA 59.740 50.000 12.03 0.00 41.13 2.10
2903 3686 0.672342 GGCCAGCCAATGCATAAGAG 59.328 55.000 0.00 0.00 41.13 2.85
2904 3687 0.031721 GCCAGCCAATGCATAAGAGC 59.968 55.000 0.00 0.40 41.13 4.09
2915 3698 3.018856 TGCATAAGAGCAACTCCAATGG 58.981 45.455 0.00 0.00 42.46 3.16
2916 3699 2.360165 GCATAAGAGCAACTCCAATGGG 59.640 50.000 0.00 0.00 0.00 4.00
2917 3700 2.806945 TAAGAGCAACTCCAATGGGG 57.193 50.000 0.00 0.00 38.37 4.96
2918 3701 0.613012 AAGAGCAACTCCAATGGGGC 60.613 55.000 0.00 0.00 36.21 5.80
2919 3702 2.361610 AGCAACTCCAATGGGGCG 60.362 61.111 0.00 0.00 36.21 6.13
2920 3703 2.361104 GCAACTCCAATGGGGCGA 60.361 61.111 0.00 0.00 36.21 5.54
2921 3704 2.700773 GCAACTCCAATGGGGCGAC 61.701 63.158 0.00 0.00 36.21 5.19
2936 3719 2.433664 GACCAAACGGACGGCGAT 60.434 61.111 16.62 0.00 0.00 4.58
2937 3720 2.030958 GACCAAACGGACGGCGATT 61.031 57.895 16.62 0.00 0.00 3.34
2938 3721 1.571215 GACCAAACGGACGGCGATTT 61.571 55.000 16.62 5.62 0.00 2.17
2939 3722 1.133869 CCAAACGGACGGCGATTTC 59.866 57.895 16.62 0.00 0.00 2.17
2940 3723 1.225637 CAAACGGACGGCGATTTCG 60.226 57.895 16.62 13.70 43.27 3.46
2941 3724 1.665599 AAACGGACGGCGATTTCGT 60.666 52.632 16.62 14.37 44.03 3.85
2950 3733 3.378013 GCGATTTCGTCCGCTTTTT 57.622 47.368 0.00 0.00 46.96 1.94
2951 3734 0.974836 GCGATTTCGTCCGCTTTTTG 59.025 50.000 0.00 0.00 46.96 2.44
2952 3735 1.662026 GCGATTTCGTCCGCTTTTTGT 60.662 47.619 0.00 0.00 46.96 2.83
2953 3736 2.230864 CGATTTCGTCCGCTTTTTGTC 58.769 47.619 0.00 0.00 34.11 3.18
2954 3737 2.581637 GATTTCGTCCGCTTTTTGTCC 58.418 47.619 0.00 0.00 0.00 4.02
2955 3738 0.305313 TTTCGTCCGCTTTTTGTCCG 59.695 50.000 0.00 0.00 0.00 4.79
2956 3739 0.810823 TTCGTCCGCTTTTTGTCCGT 60.811 50.000 0.00 0.00 0.00 4.69
2957 3740 0.810823 TCGTCCGCTTTTTGTCCGTT 60.811 50.000 0.00 0.00 0.00 4.44
2958 3741 0.028374 CGTCCGCTTTTTGTCCGTTT 59.972 50.000 0.00 0.00 0.00 3.60
2959 3742 1.472990 GTCCGCTTTTTGTCCGTTTG 58.527 50.000 0.00 0.00 0.00 2.93
2960 3743 0.382515 TCCGCTTTTTGTCCGTTTGG 59.617 50.000 0.00 0.00 0.00 3.28
2961 3744 0.596341 CCGCTTTTTGTCCGTTTGGG 60.596 55.000 0.00 0.00 35.24 4.12
2962 3745 0.101579 CGCTTTTTGTCCGTTTGGGT 59.898 50.000 0.00 0.00 37.00 4.51
2963 3746 1.847818 GCTTTTTGTCCGTTTGGGTC 58.152 50.000 0.00 0.00 37.00 4.46
2964 3747 1.862411 GCTTTTTGTCCGTTTGGGTCG 60.862 52.381 0.00 0.00 37.00 4.79
2966 3749 0.394080 TTTTGTCCGTTTGGGTCGGT 60.394 50.000 4.36 0.00 46.86 4.69
2967 3750 0.814812 TTTGTCCGTTTGGGTCGGTC 60.815 55.000 4.36 0.00 46.86 4.79
2968 3751 2.735857 GTCCGTTTGGGTCGGTCG 60.736 66.667 4.36 0.00 46.86 4.79
2969 3752 4.668118 TCCGTTTGGGTCGGTCGC 62.668 66.667 4.36 0.00 46.86 5.19
2988 3771 4.477975 CGTCCGGCGTCTGACCTC 62.478 72.222 6.01 0.00 35.54 3.85
2989 3772 3.063084 GTCCGGCGTCTGACCTCT 61.063 66.667 6.01 0.00 0.00 3.69
2990 3773 2.282958 TCCGGCGTCTGACCTCTT 60.283 61.111 6.01 0.00 0.00 2.85
2991 3774 1.906824 TCCGGCGTCTGACCTCTTT 60.907 57.895 6.01 0.00 0.00 2.52
2992 3775 1.004918 CCGGCGTCTGACCTCTTTT 60.005 57.895 6.01 0.00 0.00 2.27
2993 3776 0.245539 CCGGCGTCTGACCTCTTTTA 59.754 55.000 6.01 0.00 0.00 1.52
2994 3777 1.630148 CGGCGTCTGACCTCTTTTAG 58.370 55.000 0.00 0.00 0.00 1.85
2995 3778 1.201647 CGGCGTCTGACCTCTTTTAGA 59.798 52.381 0.00 0.00 0.00 2.10
2996 3779 2.159226 CGGCGTCTGACCTCTTTTAGAT 60.159 50.000 0.00 0.00 0.00 1.98
2997 3780 3.676324 CGGCGTCTGACCTCTTTTAGATT 60.676 47.826 0.00 0.00 0.00 2.40
2998 3781 4.254492 GGCGTCTGACCTCTTTTAGATTT 58.746 43.478 1.55 0.00 0.00 2.17
2999 3782 4.093556 GGCGTCTGACCTCTTTTAGATTTG 59.906 45.833 1.55 0.00 0.00 2.32
3000 3783 4.093556 GCGTCTGACCTCTTTTAGATTTGG 59.906 45.833 1.55 0.00 0.00 3.28
3001 3784 4.631813 CGTCTGACCTCTTTTAGATTTGGG 59.368 45.833 1.55 0.00 0.00 4.12
3002 3785 5.561679 GTCTGACCTCTTTTAGATTTGGGT 58.438 41.667 0.00 0.00 0.00 4.51
3003 3786 5.644206 GTCTGACCTCTTTTAGATTTGGGTC 59.356 44.000 0.00 0.00 36.76 4.46
3004 3787 4.575885 TGACCTCTTTTAGATTTGGGTCG 58.424 43.478 0.00 0.00 38.17 4.79
3005 3788 3.939592 GACCTCTTTTAGATTTGGGTCGG 59.060 47.826 0.00 0.00 29.82 4.79
3006 3789 3.329814 ACCTCTTTTAGATTTGGGTCGGT 59.670 43.478 0.00 0.00 0.00 4.69
3007 3790 4.533311 ACCTCTTTTAGATTTGGGTCGGTA 59.467 41.667 0.00 0.00 0.00 4.02
3008 3791 5.116882 CCTCTTTTAGATTTGGGTCGGTAG 58.883 45.833 0.00 0.00 0.00 3.18
3009 3792 5.093849 TCTTTTAGATTTGGGTCGGTAGG 57.906 43.478 0.00 0.00 0.00 3.18
3010 3793 3.918294 TTTAGATTTGGGTCGGTAGGG 57.082 47.619 0.00 0.00 0.00 3.53
3011 3794 1.125633 TAGATTTGGGTCGGTAGGGC 58.874 55.000 0.00 0.00 0.00 5.19
3012 3795 1.523032 GATTTGGGTCGGTAGGGCG 60.523 63.158 0.00 0.00 0.00 6.13
3013 3796 3.692370 ATTTGGGTCGGTAGGGCGC 62.692 63.158 0.00 0.00 0.00 6.53
3032 3815 3.732892 CAACGCGCCGACCCATTT 61.733 61.111 5.73 0.00 0.00 2.32
3033 3816 3.428282 AACGCGCCGACCCATTTC 61.428 61.111 5.73 0.00 0.00 2.17
3034 3817 4.690719 ACGCGCCGACCCATTTCA 62.691 61.111 5.73 0.00 0.00 2.69
3035 3818 3.202001 CGCGCCGACCCATTTCAT 61.202 61.111 0.00 0.00 0.00 2.57
3036 3819 2.408835 GCGCCGACCCATTTCATG 59.591 61.111 0.00 0.00 0.00 3.07
3037 3820 2.406616 GCGCCGACCCATTTCATGT 61.407 57.895 0.00 0.00 0.00 3.21
3038 3821 1.721487 CGCCGACCCATTTCATGTC 59.279 57.895 0.00 0.00 0.00 3.06
3041 3824 1.721487 CGACCCATTTCATGTCGGC 59.279 57.895 3.52 0.00 45.93 5.54
3042 3825 1.721487 GACCCATTTCATGTCGGCG 59.279 57.895 0.00 0.00 0.00 6.46
3043 3826 2.322999 GACCCATTTCATGTCGGCGC 62.323 60.000 0.00 0.00 0.00 6.53
3044 3827 2.023181 CCATTTCATGTCGGCGCG 59.977 61.111 0.00 0.00 0.00 6.86
3045 3828 2.648724 CATTTCATGTCGGCGCGC 60.649 61.111 25.94 25.94 0.00 6.86
3046 3829 3.124270 ATTTCATGTCGGCGCGCA 61.124 55.556 34.42 13.24 0.00 6.09
3047 3830 2.685829 ATTTCATGTCGGCGCGCAA 61.686 52.632 34.42 18.06 0.00 4.85
3048 3831 1.992233 ATTTCATGTCGGCGCGCAAT 61.992 50.000 34.42 17.95 0.00 3.56
3049 3832 2.193865 TTTCATGTCGGCGCGCAATT 62.194 50.000 34.42 9.54 0.00 2.32
3050 3833 2.193865 TTCATGTCGGCGCGCAATTT 62.194 50.000 34.42 10.34 0.00 1.82
3051 3834 1.801113 CATGTCGGCGCGCAATTTT 60.801 52.632 34.42 11.56 0.00 1.82
3052 3835 1.080839 ATGTCGGCGCGCAATTTTT 60.081 47.368 34.42 9.76 0.00 1.94
3053 3836 0.169230 ATGTCGGCGCGCAATTTTTA 59.831 45.000 34.42 12.13 0.00 1.52
3054 3837 0.453615 TGTCGGCGCGCAATTTTTAG 60.454 50.000 34.42 12.49 0.00 1.85
3055 3838 0.179210 GTCGGCGCGCAATTTTTAGA 60.179 50.000 34.42 14.58 0.00 2.10
3056 3839 0.517755 TCGGCGCGCAATTTTTAGAA 59.482 45.000 34.42 1.68 0.00 2.10
3057 3840 1.069159 TCGGCGCGCAATTTTTAGAAA 60.069 42.857 34.42 0.10 0.00 2.52
3058 3841 1.716581 CGGCGCGCAATTTTTAGAAAA 59.283 42.857 34.42 0.00 0.00 2.29
3059 3842 2.154007 CGGCGCGCAATTTTTAGAAAAA 59.846 40.909 34.42 2.82 41.59 1.94
3061 3844 4.081077 GGCGCGCAATTTTTAGAAAAATG 58.919 39.130 34.42 4.57 45.16 2.32
3062 3845 3.534131 GCGCGCAATTTTTAGAAAAATGC 59.466 39.130 29.10 13.44 45.16 3.56
3063 3846 4.081077 CGCGCAATTTTTAGAAAAATGCC 58.919 39.130 8.75 10.44 45.16 4.40
3064 3847 4.402583 GCGCAATTTTTAGAAAAATGCCC 58.597 39.130 16.23 7.51 45.16 5.36
3065 3848 4.083590 GCGCAATTTTTAGAAAAATGCCCA 60.084 37.500 16.23 0.00 45.16 5.36
3066 3849 5.381477 CGCAATTTTTAGAAAAATGCCCAC 58.619 37.500 16.23 2.64 45.16 4.61
3067 3850 5.381477 GCAATTTTTAGAAAAATGCCCACG 58.619 37.500 12.48 0.00 45.16 4.94
3068 3851 5.616645 GCAATTTTTAGAAAAATGCCCACGG 60.617 40.000 12.48 1.33 45.16 4.94
3069 3852 3.394719 TTTTTAGAAAAATGCCCACGGC 58.605 40.909 0.00 0.00 39.85 5.68
3070 3853 3.804063 TTTTTAGAAAAATGCCCACGGCC 60.804 43.478 0.00 0.00 39.24 6.13
3071 3854 6.255906 TTTTTAGAAAAATGCCCACGGCCA 62.256 41.667 2.24 0.00 39.24 5.36
3072 3855 7.490582 TTTTTAGAAAAATGCCCACGGCCAT 62.491 40.000 2.24 0.00 39.24 4.40
3073 3856 8.200506 TTTTTAGAAAAATGCCCACGGCCATA 62.201 38.462 2.24 0.00 39.24 2.74
3074 3857 9.420682 TTTTTAGAAAAATGCCCACGGCCATAT 62.421 37.037 2.24 0.00 39.24 1.78
3078 3861 4.201951 GCCCACGGCCATATATCG 57.798 61.111 2.24 0.00 44.06 2.92
3079 3862 1.295423 GCCCACGGCCATATATCGT 59.705 57.895 2.24 0.00 44.06 3.73
3082 3865 2.456000 CACGGCCATATATCGTGCC 58.544 57.895 2.24 9.16 45.56 5.01
3083 3866 0.320334 CACGGCCATATATCGTGCCA 60.320 55.000 2.24 0.00 45.56 4.92
3084 3867 0.037326 ACGGCCATATATCGTGCCAG 60.037 55.000 2.24 10.64 44.22 4.85
3085 3868 1.361668 CGGCCATATATCGTGCCAGC 61.362 60.000 2.24 0.00 44.22 4.85
3086 3869 1.361668 GGCCATATATCGTGCCAGCG 61.362 60.000 0.00 0.00 43.46 5.18
3087 3870 1.361668 GCCATATATCGTGCCAGCGG 61.362 60.000 0.00 0.00 0.00 5.52
3105 3888 4.082523 CCATGTCGTCGCCCTGGT 62.083 66.667 0.00 0.00 0.00 4.00
3106 3889 2.047274 CATGTCGTCGCCCTGGTT 60.047 61.111 0.00 0.00 0.00 3.67
3107 3890 1.671054 CATGTCGTCGCCCTGGTTT 60.671 57.895 0.00 0.00 0.00 3.27
3108 3891 1.072505 ATGTCGTCGCCCTGGTTTT 59.927 52.632 0.00 0.00 0.00 2.43
3109 3892 1.234615 ATGTCGTCGCCCTGGTTTTG 61.235 55.000 0.00 0.00 0.00 2.44
3110 3893 2.281208 TCGTCGCCCTGGTTTTGG 60.281 61.111 0.00 0.00 0.00 3.28
3111 3894 4.038080 CGTCGCCCTGGTTTTGGC 62.038 66.667 0.00 0.00 44.41 4.52
3115 3898 4.056125 GCCCTGGTTTTGGCGCTC 62.056 66.667 7.64 0.00 38.00 5.03
3116 3899 3.373565 CCCTGGTTTTGGCGCTCC 61.374 66.667 7.64 3.30 0.00 4.70
3117 3900 2.597217 CCTGGTTTTGGCGCTCCA 60.597 61.111 7.64 7.90 41.55 3.86
3118 3901 2.629656 CCTGGTTTTGGCGCTCCAG 61.630 63.158 20.13 20.13 44.53 3.86
3119 3902 2.513395 TGGTTTTGGCGCTCCAGA 59.487 55.556 7.64 0.00 44.53 3.86
3120 3903 1.600636 TGGTTTTGGCGCTCCAGAG 60.601 57.895 7.64 0.00 44.53 3.35
3129 3912 4.760047 GCTCCAGAGCGCGGGAAA 62.760 66.667 17.12 0.00 45.29 3.13
3130 3913 2.510238 CTCCAGAGCGCGGGAAAG 60.510 66.667 17.12 4.20 37.94 2.62
3131 3914 4.082523 TCCAGAGCGCGGGAAAGG 62.083 66.667 14.73 6.97 35.34 3.11
3132 3915 4.394712 CCAGAGCGCGGGAAAGGT 62.395 66.667 8.83 0.00 0.00 3.50
3133 3916 2.358737 CAGAGCGCGGGAAAGGTT 60.359 61.111 8.83 0.00 0.00 3.50
3134 3917 2.047179 AGAGCGCGGGAAAGGTTC 60.047 61.111 8.83 0.00 0.00 3.62
3155 3938 4.490575 CGCGCGGGGGAAAATTGG 62.491 66.667 24.84 0.00 0.00 3.16
3156 3939 4.812476 GCGCGGGGGAAAATTGGC 62.812 66.667 8.83 0.00 0.00 4.52
3157 3940 4.141965 CGCGGGGGAAAATTGGCC 62.142 66.667 0.00 0.00 0.00 5.36
3158 3941 2.683572 GCGGGGGAAAATTGGCCT 60.684 61.111 3.32 0.00 0.00 5.19
3159 3942 1.380650 GCGGGGGAAAATTGGCCTA 60.381 57.895 3.32 0.00 0.00 3.93
3160 3943 1.391933 GCGGGGGAAAATTGGCCTAG 61.392 60.000 3.32 0.00 0.00 3.02
3161 3944 1.391933 CGGGGGAAAATTGGCCTAGC 61.392 60.000 3.32 0.00 0.00 3.42
3162 3945 1.391933 GGGGGAAAATTGGCCTAGCG 61.392 60.000 3.32 0.00 0.00 4.26
3163 3946 1.437573 GGGAAAATTGGCCTAGCGC 59.562 57.895 3.32 0.00 0.00 5.92
3164 3947 1.064134 GGAAAATTGGCCTAGCGCG 59.936 57.895 3.32 0.00 38.94 6.86
3165 3948 1.586303 GAAAATTGGCCTAGCGCGC 60.586 57.895 26.66 26.66 38.94 6.86
3166 3949 3.395470 AAAATTGGCCTAGCGCGCG 62.395 57.895 28.44 28.44 38.94 6.86
3202 3985 2.955914 GTCCGGCGCGCGTTATAA 60.956 61.111 32.35 10.80 0.00 0.98
3203 3986 2.656007 TCCGGCGCGCGTTATAAG 60.656 61.111 32.35 15.35 0.00 1.73
3204 3987 2.656007 CCGGCGCGCGTTATAAGA 60.656 61.111 32.35 0.00 0.00 2.10
3205 3988 2.232296 CCGGCGCGCGTTATAAGAA 61.232 57.895 32.35 0.00 0.00 2.52
3206 3989 1.198397 CGGCGCGCGTTATAAGAAG 59.802 57.895 32.35 8.26 0.00 2.85
3207 3990 1.563173 GGCGCGCGTTATAAGAAGG 59.437 57.895 32.35 0.00 0.00 3.46
3208 3991 1.083593 GCGCGCGTTATAAGAAGGC 60.084 57.895 32.35 5.62 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.324460 ACACCTAGCCGAAGCCTAGT 60.324 55.000 0.00 0.00 41.25 2.57
6 7 2.711922 CGACACCTAGCCGAAGCCT 61.712 63.158 0.00 0.00 41.25 4.58
78 79 4.310022 AGTCCTACTGAGCAACTCTAGT 57.690 45.455 0.00 1.55 0.00 2.57
91 92 7.341805 TCGTTATTGTTACTCCTAGTCCTACT 58.658 38.462 0.00 0.00 0.00 2.57
92 93 7.559590 TCGTTATTGTTACTCCTAGTCCTAC 57.440 40.000 0.00 0.00 0.00 3.18
93 94 8.757982 ATTCGTTATTGTTACTCCTAGTCCTA 57.242 34.615 0.00 0.00 0.00 2.94
94 95 7.657023 ATTCGTTATTGTTACTCCTAGTCCT 57.343 36.000 0.00 0.00 0.00 3.85
95 96 7.977853 TGAATTCGTTATTGTTACTCCTAGTCC 59.022 37.037 0.04 0.00 0.00 3.85
122 128 2.512476 ACTAACCAACCAACTTCCCAGT 59.488 45.455 0.00 0.00 33.11 4.00
404 919 5.656859 TCCAATTCCATACTTCGAGAGAGAA 59.343 40.000 2.28 0.00 43.69 2.87
701 1350 2.656651 CTTGCTCCGATCGCCGAG 60.657 66.667 10.32 13.04 41.76 4.63
791 1440 1.422531 ATTGTTTTTCCTGGCAGCCA 58.577 45.000 15.23 15.23 0.00 4.75
792 1441 2.094026 CCTATTGTTTTTCCTGGCAGCC 60.094 50.000 9.56 3.66 0.00 4.85
888 1544 2.635714 TGCATGCTGGATCAGTACAAG 58.364 47.619 20.33 0.00 33.43 3.16
1204 1904 2.254651 GCAGCTCAGTTGCAGCAC 59.745 61.111 8.90 0.00 43.48 4.40
1583 2318 1.217882 GGACCGCACAAATATCTCCG 58.782 55.000 0.00 0.00 0.00 4.63
1597 2334 1.656652 CCTCATGTAGCTTTGGACCG 58.343 55.000 0.00 0.00 0.00 4.79
1614 2351 1.731433 GATCGCACAATGCATGGCCT 61.731 55.000 3.32 0.00 45.36 5.19
1777 2520 7.341805 AGAATTTGAATGCTAGTCTGTGGTAT 58.658 34.615 0.00 0.00 0.00 2.73
1814 2557 6.774656 GGATGGTCCAGAGAATTTGATAACAT 59.225 38.462 0.00 0.00 36.28 2.71
2000 2776 1.446966 GAGAACTGTCTGAGGCCGC 60.447 63.158 0.00 0.00 32.80 6.53
2089 2865 2.997986 GCGACGAAATAGAGGGTTTTGA 59.002 45.455 0.00 0.00 0.00 2.69
2105 2881 2.536365 TCTTTGCCATAACTAGCGACG 58.464 47.619 0.00 0.00 0.00 5.12
2106 2882 4.939509 TTTCTTTGCCATAACTAGCGAC 57.060 40.909 0.00 0.00 0.00 5.19
2195 2972 5.477984 CCTTCTTGGTCATCTTTTCCATGAA 59.522 40.000 0.00 0.00 40.51 2.57
2404 3182 2.715046 TGGCACATTTCAGAGATCCAC 58.285 47.619 0.00 0.00 0.00 4.02
2529 3309 2.657459 AGGGGGAGAGAAAGAGAGAGAA 59.343 50.000 0.00 0.00 0.00 2.87
2539 3319 2.644798 CAAAAAGGAGAGGGGGAGAGAA 59.355 50.000 0.00 0.00 0.00 2.87
2673 3453 7.880160 TCCATTAATCCGTCATCATCTTTTT 57.120 32.000 0.00 0.00 0.00 1.94
2690 3470 5.245751 TCAAAAAGAAGCAGGCATCCATTAA 59.754 36.000 0.00 0.00 0.00 1.40
2768 3550 5.410439 GGGCTATCTTCAACGTTCAAAACTA 59.590 40.000 0.00 0.00 0.00 2.24
2769 3551 4.215613 GGGCTATCTTCAACGTTCAAAACT 59.784 41.667 0.00 0.00 0.00 2.66
2811 3593 5.794726 TTGTACTGTAACTGTAGAAGCCA 57.205 39.130 0.00 0.00 0.00 4.75
2851 3633 4.105697 AGGGTTTGTACTGATCCCTCAAAA 59.894 41.667 10.82 0.00 44.32 2.44
2852 3634 3.655777 AGGGTTTGTACTGATCCCTCAAA 59.344 43.478 10.82 0.00 44.32 2.69
2853 3635 3.256704 AGGGTTTGTACTGATCCCTCAA 58.743 45.455 10.82 0.00 44.32 3.02
2894 3677 3.018856 CCATTGGAGTTGCTCTTATGCA 58.981 45.455 0.00 0.00 41.65 3.96
2902 3685 2.361610 CGCCCCATTGGAGTTGCT 60.362 61.111 3.62 0.00 35.39 3.91
2903 3686 2.361104 TCGCCCCATTGGAGTTGC 60.361 61.111 3.62 0.53 35.07 4.17
2904 3687 2.046285 GGTCGCCCCATTGGAGTTG 61.046 63.158 3.62 0.00 35.07 3.16
2905 3688 2.075355 TTGGTCGCCCCATTGGAGTT 62.075 55.000 3.62 0.00 44.74 3.01
2906 3689 2.075355 TTTGGTCGCCCCATTGGAGT 62.075 55.000 3.62 0.00 44.74 3.85
2907 3690 1.304052 TTTGGTCGCCCCATTGGAG 60.304 57.895 3.62 0.00 44.74 3.86
2908 3691 1.605165 GTTTGGTCGCCCCATTGGA 60.605 57.895 3.62 0.00 44.74 3.53
2909 3692 2.969827 GTTTGGTCGCCCCATTGG 59.030 61.111 0.00 0.00 44.74 3.16
2910 3693 2.566010 CGTTTGGTCGCCCCATTG 59.434 61.111 0.00 0.00 44.74 2.82
2911 3694 2.675075 CCGTTTGGTCGCCCCATT 60.675 61.111 0.00 0.00 44.74 3.16
2912 3695 3.642503 TCCGTTTGGTCGCCCCAT 61.643 61.111 0.00 0.00 44.74 4.00
2913 3696 4.629523 GTCCGTTTGGTCGCCCCA 62.630 66.667 0.00 0.00 43.27 4.96
2919 3702 1.571215 AAATCGCCGTCCGTTTGGTC 61.571 55.000 0.00 0.00 38.35 4.02
2920 3703 1.571215 GAAATCGCCGTCCGTTTGGT 61.571 55.000 0.00 0.00 38.35 3.67
2921 3704 1.133869 GAAATCGCCGTCCGTTTGG 59.866 57.895 0.00 0.00 38.35 3.28
2922 3705 1.225637 CGAAATCGCCGTCCGTTTG 60.226 57.895 0.00 0.00 38.35 2.93
2923 3706 1.665599 ACGAAATCGCCGTCCGTTT 60.666 52.632 2.15 0.00 44.43 3.60
2924 3707 2.048877 ACGAAATCGCCGTCCGTT 60.049 55.556 2.15 0.00 44.43 4.44
2933 3716 2.230864 GACAAAAAGCGGACGAAATCG 58.769 47.619 0.48 0.48 46.33 3.34
2934 3717 2.581637 GGACAAAAAGCGGACGAAATC 58.418 47.619 0.00 0.00 0.00 2.17
2935 3718 1.069500 CGGACAAAAAGCGGACGAAAT 60.069 47.619 0.00 0.00 0.00 2.17
2936 3719 0.305313 CGGACAAAAAGCGGACGAAA 59.695 50.000 0.00 0.00 0.00 3.46
2937 3720 0.810823 ACGGACAAAAAGCGGACGAA 60.811 50.000 0.00 0.00 0.00 3.85
2938 3721 0.810823 AACGGACAAAAAGCGGACGA 60.811 50.000 0.00 0.00 0.00 4.20
2939 3722 0.028374 AAACGGACAAAAAGCGGACG 59.972 50.000 0.00 0.00 0.00 4.79
2940 3723 1.472990 CAAACGGACAAAAAGCGGAC 58.527 50.000 0.00 0.00 0.00 4.79
2941 3724 0.382515 CCAAACGGACAAAAAGCGGA 59.617 50.000 0.00 0.00 0.00 5.54
2942 3725 0.596341 CCCAAACGGACAAAAAGCGG 60.596 55.000 0.00 0.00 0.00 5.52
2943 3726 0.101579 ACCCAAACGGACAAAAAGCG 59.898 50.000 0.00 0.00 34.64 4.68
2944 3727 1.847818 GACCCAAACGGACAAAAAGC 58.152 50.000 0.00 0.00 34.64 3.51
2945 3728 2.113910 CGACCCAAACGGACAAAAAG 57.886 50.000 0.00 0.00 34.64 2.27
2972 3755 2.156051 AAAGAGGTCAGACGCCGGAC 62.156 60.000 5.05 0.00 36.88 4.79
2973 3756 1.469335 AAAAGAGGTCAGACGCCGGA 61.469 55.000 5.05 0.00 0.00 5.14
2974 3757 0.245539 TAAAAGAGGTCAGACGCCGG 59.754 55.000 0.00 0.00 0.00 6.13
2975 3758 1.201647 TCTAAAAGAGGTCAGACGCCG 59.798 52.381 0.00 0.00 0.00 6.46
2976 3759 3.528597 ATCTAAAAGAGGTCAGACGCC 57.471 47.619 0.00 0.00 0.00 5.68
2977 3760 4.093556 CCAAATCTAAAAGAGGTCAGACGC 59.906 45.833 0.00 0.00 0.00 5.19
2978 3761 4.631813 CCCAAATCTAAAAGAGGTCAGACG 59.368 45.833 0.00 0.00 0.00 4.18
2979 3762 5.561679 ACCCAAATCTAAAAGAGGTCAGAC 58.438 41.667 0.00 0.00 0.00 3.51
2980 3763 5.568825 CGACCCAAATCTAAAAGAGGTCAGA 60.569 44.000 11.43 0.00 36.30 3.27
2981 3764 4.631813 CGACCCAAATCTAAAAGAGGTCAG 59.368 45.833 11.43 3.79 36.30 3.51
2982 3765 4.564821 CCGACCCAAATCTAAAAGAGGTCA 60.565 45.833 11.43 0.00 36.30 4.02
2983 3766 3.939592 CCGACCCAAATCTAAAAGAGGTC 59.060 47.826 0.00 0.00 34.38 3.85
2984 3767 3.329814 ACCGACCCAAATCTAAAAGAGGT 59.670 43.478 0.00 0.00 0.00 3.85
2985 3768 3.951663 ACCGACCCAAATCTAAAAGAGG 58.048 45.455 0.00 0.00 0.00 3.69
2986 3769 5.116882 CCTACCGACCCAAATCTAAAAGAG 58.883 45.833 0.00 0.00 0.00 2.85
2987 3770 4.080751 CCCTACCGACCCAAATCTAAAAGA 60.081 45.833 0.00 0.00 0.00 2.52
2988 3771 4.196971 CCCTACCGACCCAAATCTAAAAG 58.803 47.826 0.00 0.00 0.00 2.27
2989 3772 3.622953 GCCCTACCGACCCAAATCTAAAA 60.623 47.826 0.00 0.00 0.00 1.52
2990 3773 2.092807 GCCCTACCGACCCAAATCTAAA 60.093 50.000 0.00 0.00 0.00 1.85
2991 3774 1.487558 GCCCTACCGACCCAAATCTAA 59.512 52.381 0.00 0.00 0.00 2.10
2992 3775 1.125633 GCCCTACCGACCCAAATCTA 58.874 55.000 0.00 0.00 0.00 1.98
2993 3776 1.912971 GCCCTACCGACCCAAATCT 59.087 57.895 0.00 0.00 0.00 2.40
2994 3777 1.523032 CGCCCTACCGACCCAAATC 60.523 63.158 0.00 0.00 0.00 2.17
2995 3778 2.587889 CGCCCTACCGACCCAAAT 59.412 61.111 0.00 0.00 0.00 2.32
2996 3779 4.397832 GCGCCCTACCGACCCAAA 62.398 66.667 0.00 0.00 0.00 3.28
3015 3798 3.661025 GAAATGGGTCGGCGCGTTG 62.661 63.158 12.62 0.00 36.96 4.10
3016 3799 3.428282 GAAATGGGTCGGCGCGTT 61.428 61.111 8.43 5.61 38.23 4.84
3017 3800 3.969250 ATGAAATGGGTCGGCGCGT 62.969 57.895 8.43 0.00 0.00 6.01
3018 3801 3.202001 ATGAAATGGGTCGGCGCG 61.202 61.111 0.00 0.00 0.00 6.86
3019 3802 2.408835 CATGAAATGGGTCGGCGC 59.591 61.111 0.00 0.00 41.79 6.53
3029 3812 1.992233 ATTGCGCGCCGACATGAAAT 61.992 50.000 30.77 15.87 0.00 2.17
3030 3813 2.193865 AATTGCGCGCCGACATGAAA 62.194 50.000 30.77 14.04 0.00 2.69
3031 3814 2.193865 AAATTGCGCGCCGACATGAA 62.194 50.000 30.77 14.88 0.00 2.57
3032 3815 2.193865 AAAATTGCGCGCCGACATGA 62.194 50.000 30.77 4.37 0.00 3.07
3033 3816 1.343510 AAAAATTGCGCGCCGACATG 61.344 50.000 30.77 0.00 0.00 3.21
3034 3817 0.169230 TAAAAATTGCGCGCCGACAT 59.831 45.000 30.77 12.55 0.00 3.06
3035 3818 0.453615 CTAAAAATTGCGCGCCGACA 60.454 50.000 30.77 6.71 0.00 4.35
3036 3819 0.179210 TCTAAAAATTGCGCGCCGAC 60.179 50.000 30.77 0.47 0.00 4.79
3037 3820 0.517755 TTCTAAAAATTGCGCGCCGA 59.482 45.000 30.77 18.25 0.00 5.54
3038 3821 1.332178 TTTCTAAAAATTGCGCGCCG 58.668 45.000 30.77 6.52 0.00 6.46
3039 3822 3.779573 TTTTTCTAAAAATTGCGCGCC 57.220 38.095 30.77 11.42 33.29 6.53
3040 3823 3.534131 GCATTTTTCTAAAAATTGCGCGC 59.466 39.130 27.26 27.26 43.91 6.86
3041 3824 4.081077 GGCATTTTTCTAAAAATTGCGCG 58.919 39.130 18.25 0.00 43.91 6.86
3042 3825 4.083590 TGGGCATTTTTCTAAAAATTGCGC 60.084 37.500 25.65 25.65 43.91 6.09
3043 3826 5.381477 GTGGGCATTTTTCTAAAAATTGCG 58.619 37.500 18.25 7.52 43.91 4.85
3044 3827 5.381477 CGTGGGCATTTTTCTAAAAATTGC 58.619 37.500 17.34 17.34 43.91 3.56
3045 3828 5.925907 CCGTGGGCATTTTTCTAAAAATTG 58.074 37.500 10.03 5.77 43.91 2.32
3062 3845 3.137484 CACGATATATGGCCGTGGG 57.863 57.895 8.05 0.00 46.72 4.61
3067 3850 1.361668 CGCTGGCACGATATATGGCC 61.362 60.000 11.09 11.09 46.58 5.36
3068 3851 1.361668 CCGCTGGCACGATATATGGC 61.362 60.000 10.33 6.16 42.74 4.40
3069 3852 2.754648 CCGCTGGCACGATATATGG 58.245 57.895 10.33 0.00 34.06 2.74
3088 3871 3.605749 AACCAGGGCGACGACATGG 62.606 63.158 31.64 31.64 37.07 3.66
3089 3872 1.234615 AAAACCAGGGCGACGACATG 61.235 55.000 8.72 8.72 0.00 3.21
3090 3873 1.072505 AAAACCAGGGCGACGACAT 59.927 52.632 1.63 0.00 0.00 3.06
3091 3874 1.890041 CAAAACCAGGGCGACGACA 60.890 57.895 1.63 0.00 0.00 4.35
3092 3875 2.613506 CCAAAACCAGGGCGACGAC 61.614 63.158 0.00 0.00 0.00 4.34
3093 3876 2.281208 CCAAAACCAGGGCGACGA 60.281 61.111 0.00 0.00 0.00 4.20
3094 3877 4.038080 GCCAAAACCAGGGCGACG 62.038 66.667 0.00 0.00 40.93 5.12
3098 3881 4.056125 GAGCGCCAAAACCAGGGC 62.056 66.667 2.29 0.00 46.80 5.19
3099 3882 3.373565 GGAGCGCCAAAACCAGGG 61.374 66.667 2.29 0.00 0.00 4.45
3100 3883 2.597217 TGGAGCGCCAAAACCAGG 60.597 61.111 6.75 0.00 42.49 4.45
3101 3884 1.580845 CTCTGGAGCGCCAAAACCAG 61.581 60.000 20.90 20.90 45.41 4.00
3102 3885 1.600636 CTCTGGAGCGCCAAAACCA 60.601 57.895 11.38 5.74 45.41 3.67
3103 3886 2.982744 GCTCTGGAGCGCCAAAACC 61.983 63.158 11.38 0.57 45.41 3.27
3104 3887 2.563427 GCTCTGGAGCGCCAAAAC 59.437 61.111 11.38 0.00 45.41 2.43
3113 3896 2.510238 CTTTCCCGCGCTCTGGAG 60.510 66.667 5.56 0.00 30.91 3.86
3114 3897 4.082523 CCTTTCCCGCGCTCTGGA 62.083 66.667 5.56 5.90 0.00 3.86
3115 3898 3.901797 AACCTTTCCCGCGCTCTGG 62.902 63.158 5.56 3.12 0.00 3.86
3116 3899 2.358737 AACCTTTCCCGCGCTCTG 60.359 61.111 5.56 0.00 0.00 3.35
3117 3900 2.047179 GAACCTTTCCCGCGCTCT 60.047 61.111 5.56 0.00 0.00 4.09
3118 3901 3.125573 GGAACCTTTCCCGCGCTC 61.126 66.667 5.56 0.00 44.30 5.03
3138 3921 4.490575 CCAATTTTCCCCCGCGCG 62.491 66.667 25.67 25.67 0.00 6.86
3139 3922 4.812476 GCCAATTTTCCCCCGCGC 62.812 66.667 0.00 0.00 0.00 6.86
3140 3923 4.141965 GGCCAATTTTCCCCCGCG 62.142 66.667 0.00 0.00 0.00 6.46
3141 3924 1.380650 TAGGCCAATTTTCCCCCGC 60.381 57.895 5.01 0.00 0.00 6.13
3142 3925 1.391933 GCTAGGCCAATTTTCCCCCG 61.392 60.000 5.01 0.00 0.00 5.73
3143 3926 1.391933 CGCTAGGCCAATTTTCCCCC 61.392 60.000 5.01 0.00 0.00 5.40
3144 3927 2.016393 GCGCTAGGCCAATTTTCCCC 62.016 60.000 5.01 0.00 34.80 4.81
3145 3928 1.437573 GCGCTAGGCCAATTTTCCC 59.562 57.895 5.01 0.00 34.80 3.97
3146 3929 1.064134 CGCGCTAGGCCAATTTTCC 59.936 57.895 5.01 0.00 38.94 3.13
3147 3930 1.586303 GCGCGCTAGGCCAATTTTC 60.586 57.895 26.67 0.00 38.94 2.29
3148 3931 2.489751 GCGCGCTAGGCCAATTTT 59.510 55.556 26.67 0.00 38.94 1.82
3149 3932 3.876198 CGCGCGCTAGGCCAATTT 61.876 61.111 30.48 0.00 38.94 1.82
3185 3968 2.924285 CTTATAACGCGCGCCGGAC 61.924 63.158 32.58 0.00 42.52 4.79
3186 3969 2.610700 TTCTTATAACGCGCGCCGGA 62.611 55.000 32.58 16.32 42.52 5.14
3187 3970 2.142418 CTTCTTATAACGCGCGCCGG 62.142 60.000 32.58 15.62 42.52 6.13
3188 3971 1.198397 CTTCTTATAACGCGCGCCG 59.802 57.895 32.58 22.51 44.21 6.46
3189 3972 1.563173 CCTTCTTATAACGCGCGCC 59.437 57.895 32.58 8.11 0.00 6.53
3190 3973 1.083593 GCCTTCTTATAACGCGCGC 60.084 57.895 32.58 23.91 0.00 6.86
3191 3974 1.198397 CGCCTTCTTATAACGCGCG 59.802 57.895 30.96 30.96 36.02 6.86
3192 3975 2.294728 ACGCCTTCTTATAACGCGC 58.705 52.632 5.73 0.00 46.42 6.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.