Multiple sequence alignment - TraesCS7D01G306800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G306800 chr7D 100.000 6118 0 0 1 6118 388131793 388125676 0.000000e+00 11298.0
1 TraesCS7D01G306800 chr7D 93.182 792 40 11 3 785 50711694 50710908 0.000000e+00 1151.0
2 TraesCS7D01G306800 chr7D 92.308 390 26 3 5696 6084 393036992 393037378 8.960000e-153 551.0
3 TraesCS7D01G306800 chr7D 100.000 47 0 0 5662 5708 393036906 393036952 3.040000e-13 87.9
4 TraesCS7D01G306800 chr7A 96.576 4001 94 19 786 4762 438523785 438519804 0.000000e+00 6589.0
5 TraesCS7D01G306800 chr7A 94.634 820 29 5 4798 5603 438519699 438518881 0.000000e+00 1256.0
6 TraesCS7D01G306800 chr7A 83.133 166 7 10 5660 5804 162913227 162913392 1.380000e-26 132.0
7 TraesCS7D01G306800 chr7A 100.000 42 0 0 5600 5641 438518830 438518789 1.830000e-10 78.7
8 TraesCS7D01G306800 chr7B 96.793 3960 90 16 823 4762 383608158 383604216 0.000000e+00 6575.0
9 TraesCS7D01G306800 chr7B 94.375 800 24 6 4777 5563 383604138 383603347 0.000000e+00 1208.0
10 TraesCS7D01G306800 chr7B 91.509 424 34 2 5696 6118 581448651 581448229 3.180000e-162 582.0
11 TraesCS7D01G306800 chr7B 100.000 42 0 0 5600 5641 383603201 383603160 1.830000e-10 78.7
12 TraesCS7D01G306800 chr7B 100.000 41 0 0 788 828 383608355 383608315 6.580000e-10 76.8
13 TraesCS7D01G306800 chr6D 94.207 794 34 9 1 785 147647276 147646486 0.000000e+00 1201.0
14 TraesCS7D01G306800 chr6D 92.597 797 42 12 1 788 423361643 423360855 0.000000e+00 1129.0
15 TraesCS7D01G306800 chr2D 93.577 794 34 12 1 785 160320427 160319642 0.000000e+00 1168.0
16 TraesCS7D01G306800 chr2D 86.480 392 50 3 5729 6118 649828641 649828251 1.580000e-115 427.0
17 TraesCS7D01G306800 chr3D 93.064 793 41 11 1 785 591714418 591715204 0.000000e+00 1147.0
18 TraesCS7D01G306800 chr3D 92.588 796 44 11 1 785 566072806 566073597 0.000000e+00 1129.0
19 TraesCS7D01G306800 chr3D 83.688 141 12 1 5742 5882 367419392 367419263 8.330000e-24 122.0
20 TraesCS7D01G306800 chr1D 92.794 791 47 9 1 785 247133643 247134429 0.000000e+00 1136.0
21 TraesCS7D01G306800 chr1D 84.726 419 45 7 5700 6118 13358993 13359392 9.550000e-108 401.0
22 TraesCS7D01G306800 chr4D 92.481 798 48 10 1 792 468006998 468007789 0.000000e+00 1131.0
23 TraesCS7D01G306800 chr4D 92.579 795 43 12 1 786 490640721 490641508 0.000000e+00 1127.0
24 TraesCS7D01G306800 chr5B 88.652 423 36 4 5696 6115 701794814 701795227 7.080000e-139 505.0
25 TraesCS7D01G306800 chr5B 97.674 43 1 0 5665 5707 439956529 439956571 2.370000e-09 75.0
26 TraesCS7D01G306800 chr2B 89.896 386 37 1 5733 6118 672042909 672042526 4.260000e-136 496.0
27 TraesCS7D01G306800 chr2B 85.646 418 58 2 5701 6118 798716172 798716587 7.280000e-119 438.0
28 TraesCS7D01G306800 chr2B 100.000 49 0 0 5660 5708 762069406 762069358 2.350000e-14 91.6
29 TraesCS7D01G306800 chr2B 97.917 48 1 0 5660 5707 775061052 775061099 3.930000e-12 84.2
30 TraesCS7D01G306800 chr6B 84.559 408 53 9 5721 6118 621189970 621190377 4.440000e-106 396.0
31 TraesCS7D01G306800 chr6B 93.103 174 12 0 5747 5920 169229812 169229639 7.870000e-64 255.0
32 TraesCS7D01G306800 chr3B 85.176 398 43 15 5728 6118 811172208 811172596 1.600000e-105 394.0
33 TraesCS7D01G306800 chr4A 97.826 46 1 0 5663 5708 701569248 701569293 5.080000e-11 80.5
34 TraesCS7D01G306800 chr1A 95.918 49 1 1 5665 5712 456320535 456320487 1.830000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G306800 chr7D 388125676 388131793 6117 True 11298.000000 11298 100.000 1 6118 1 chr7D.!!$R2 6117
1 TraesCS7D01G306800 chr7D 50710908 50711694 786 True 1151.000000 1151 93.182 3 785 1 chr7D.!!$R1 782
2 TraesCS7D01G306800 chr7A 438518789 438523785 4996 True 2641.233333 6589 97.070 786 5641 3 chr7A.!!$R1 4855
3 TraesCS7D01G306800 chr7B 383603160 383608355 5195 True 1984.625000 6575 97.792 788 5641 4 chr7B.!!$R2 4853
4 TraesCS7D01G306800 chr6D 147646486 147647276 790 True 1201.000000 1201 94.207 1 785 1 chr6D.!!$R1 784
5 TraesCS7D01G306800 chr6D 423360855 423361643 788 True 1129.000000 1129 92.597 1 788 1 chr6D.!!$R2 787
6 TraesCS7D01G306800 chr2D 160319642 160320427 785 True 1168.000000 1168 93.577 1 785 1 chr2D.!!$R1 784
7 TraesCS7D01G306800 chr3D 591714418 591715204 786 False 1147.000000 1147 93.064 1 785 1 chr3D.!!$F2 784
8 TraesCS7D01G306800 chr3D 566072806 566073597 791 False 1129.000000 1129 92.588 1 785 1 chr3D.!!$F1 784
9 TraesCS7D01G306800 chr1D 247133643 247134429 786 False 1136.000000 1136 92.794 1 785 1 chr1D.!!$F2 784
10 TraesCS7D01G306800 chr4D 468006998 468007789 791 False 1131.000000 1131 92.481 1 792 1 chr4D.!!$F1 791
11 TraesCS7D01G306800 chr4D 490640721 490641508 787 False 1127.000000 1127 92.579 1 786 1 chr4D.!!$F2 785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 506 0.519077 GGCGTGCCTCTTTCAGAAAG 59.481 55.0 15.89 15.89 39.88 2.62 F
1899 2095 0.695462 AGGTCATGATGCAGGCCCTA 60.695 55.0 0.00 0.00 0.00 3.53 F
2334 2532 0.918983 CCAGCAACCTATTCCCTGGA 59.081 55.0 0.00 0.00 44.50 3.86 F
3190 3395 0.611062 TGGGTAGGTCCTCTCACACG 60.611 60.0 0.00 0.00 36.25 4.49 F
3432 3637 0.681887 TGATGACAGCTGCAATGGGG 60.682 55.0 15.27 0.00 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 2100 0.670546 AGAACGATCTGTGTTGGCCG 60.671 55.000 0.00 0.0 33.59 6.13 R
3177 3382 1.823797 AGAGTACGTGTGAGAGGACC 58.176 55.000 0.00 0.0 0.00 4.46 R
4254 4460 0.605589 AAGCCTCTAACAACCCGCAC 60.606 55.000 0.00 0.0 0.00 5.34 R
4353 4559 1.535462 CTGTACAGTGAAAAAGGCCCG 59.465 52.381 15.06 0.0 0.00 6.13 R
5410 5716 2.733026 ACGAATAACCTGGAAAACGACG 59.267 45.455 0.00 0.0 0.00 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 183 4.562000 GGGAAAAACAAAACGCGTTTTCTA 59.438 37.500 38.94 0.00 43.82 2.10
174 184 5.232626 GGGAAAAACAAAACGCGTTTTCTAT 59.767 36.000 38.94 26.74 43.82 1.98
196 207 8.388103 TCTATTTTTATTTTCTTTCGCGAGAGG 58.612 33.333 24.53 11.99 43.69 3.69
204 215 4.717629 TCGCGAGAGGCACGGTTG 62.718 66.667 3.71 0.00 43.84 3.77
321 337 1.329599 GAGTCACGGTTTTGCTTTCGT 59.670 47.619 0.00 0.00 36.19 3.85
381 400 2.626266 GCCTCTTTCGGAAAGGGAAAAA 59.374 45.455 27.71 9.07 41.66 1.94
382 401 3.552273 GCCTCTTTCGGAAAGGGAAAAAC 60.552 47.826 27.71 10.56 41.66 2.43
443 464 2.651361 CTTCCACGAGAGGCACGT 59.349 61.111 0.00 0.00 44.83 4.49
462 483 1.798813 GTTTGTGATTTCGCGAGAGGT 59.201 47.619 9.59 0.00 43.69 3.85
485 506 0.519077 GGCGTGCCTCTTTCAGAAAG 59.481 55.000 15.89 15.89 39.88 2.62
488 509 1.270839 CGTGCCTCTTTCAGAAAGGGA 60.271 52.381 22.65 7.63 41.66 4.20
577 605 8.331931 ACCTATCAACATGGGATCTAGTTTTA 57.668 34.615 5.52 0.00 34.16 1.52
1428 1622 5.008019 CCATAATTGTCCTTCTGGATGTTCG 59.992 44.000 0.00 0.00 45.29 3.95
1452 1646 5.407502 GTTTTATTATGCGAACTTGGGCTT 58.592 37.500 0.00 0.00 0.00 4.35
1727 1923 9.478019 CAGTGTAAAATATGTTGTTCGATCTTC 57.522 33.333 0.00 0.00 0.00 2.87
1899 2095 0.695462 AGGTCATGATGCAGGCCCTA 60.695 55.000 0.00 0.00 0.00 3.53
1904 2100 1.406539 CATGATGCAGGCCCTAACAAC 59.593 52.381 0.00 0.00 0.00 3.32
2139 2337 4.156556 TGCTTACAGAATGCTCAAATGGTC 59.843 41.667 0.00 0.00 42.53 4.02
2245 2443 7.414319 CCATTTGTTCATTGGCACATAATTTCC 60.414 37.037 0.00 0.00 39.30 3.13
2305 2503 4.188462 TCCTGTCATTGTTAAGTATGCCG 58.812 43.478 0.00 0.00 0.00 5.69
2334 2532 0.918983 CCAGCAACCTATTCCCTGGA 59.081 55.000 0.00 0.00 44.50 3.86
2600 2798 2.622942 CCCTGCAAGCTACTGTTTTTCA 59.377 45.455 0.00 0.00 0.00 2.69
2668 2866 3.949113 TGTAGGGTTTTGACTGTTGGAAC 59.051 43.478 0.00 0.00 0.00 3.62
2714 2912 3.394606 TCAGTTGCCCTTTACTCTTTCCT 59.605 43.478 0.00 0.00 0.00 3.36
2757 2957 9.558396 GATTTCTAATGAGGATGGGATGATATC 57.442 37.037 0.00 0.00 0.00 1.63
2758 2958 6.721704 TCTAATGAGGATGGGATGATATCG 57.278 41.667 0.00 0.00 0.00 2.92
2784 2986 9.869844 GTATTCATTTCTTGGAAGTATTGATCG 57.130 33.333 0.00 0.00 0.00 3.69
2864 3069 5.105997 ACAGCCAGAGAAATTGTTAATCTGC 60.106 40.000 0.00 0.00 36.82 4.26
3177 3382 4.080919 TCACCAGATGAGTTGATTGGGTAG 60.081 45.833 0.00 0.00 33.20 3.18
3190 3395 0.611062 TGGGTAGGTCCTCTCACACG 60.611 60.000 0.00 0.00 36.25 4.49
3432 3637 0.681887 TGATGACAGCTGCAATGGGG 60.682 55.000 15.27 0.00 0.00 4.96
3463 3668 7.041721 GTGACAACTGAAGATGGTGTGATATA 58.958 38.462 0.00 0.00 0.00 0.86
3608 3813 2.096318 GCCGCATCCAACAAATGTTTTG 60.096 45.455 0.00 0.00 35.83 2.44
4313 4519 8.734218 TTATGTTGTTAACTGTTTGACTGGTA 57.266 30.769 7.22 0.00 0.00 3.25
4353 4559 8.466798 AGGAAAACATTATTGTGTATAACTGGC 58.533 33.333 0.00 0.00 35.83 4.85
4414 4620 3.888930 CACTTGTATTGGTTGGAGGTGTT 59.111 43.478 0.00 0.00 0.00 3.32
4537 4743 9.847706 ATGAGAACTAATATACGCTGTTATGAG 57.152 33.333 0.00 0.00 0.00 2.90
4538 4744 9.063615 TGAGAACTAATATACGCTGTTATGAGA 57.936 33.333 0.00 0.00 0.00 3.27
4556 4775 4.267536 TGAGATCTTTGCAATTCTCTGGG 58.732 43.478 23.76 3.07 36.43 4.45
4593 4812 2.890945 GGCTTTGGACAGTTTGGTATGT 59.109 45.455 0.00 0.00 0.00 2.29
4671 4890 8.609176 TGAATGACGCCTTTAGATAAACAATAC 58.391 33.333 0.00 0.00 0.00 1.89
4708 4927 4.780815 ACATCTCTGTCACCAAGAAAACA 58.219 39.130 0.00 0.00 0.00 2.83
4925 5220 3.684305 TGATGAATGTAAGTTGGACAGCG 59.316 43.478 0.00 0.00 0.00 5.18
5019 5314 4.676196 GCCAATTCTGCTGATGTGTAAAGG 60.676 45.833 0.00 0.00 0.00 3.11
5101 5397 4.749245 AGTTGTAGGCAAAGAAATGACG 57.251 40.909 0.00 0.00 36.22 4.35
5193 5490 2.364632 CCGCCCATTCTCAAATGTGTA 58.635 47.619 0.00 0.00 40.63 2.90
5268 5565 2.061028 CAAGGAAAAAGGCGATTGCAC 58.939 47.619 7.38 0.00 45.35 4.57
5294 5600 4.448732 GCACCAATTACAGCCTTTTCAAAG 59.551 41.667 0.00 0.00 35.79 2.77
5307 5613 5.470437 GCCTTTTCAAAGTCTAAGTACAGCT 59.530 40.000 0.00 0.00 34.20 4.24
5348 5654 4.906618 TGTTGGGTCTGAAATCTAGGAAC 58.093 43.478 0.00 0.00 0.00 3.62
5418 5724 4.774586 TCATGCGTTTATTTCGTCGTTTT 58.225 34.783 0.00 0.00 0.00 2.43
5434 5740 4.685628 GTCGTTTTCCAGGTTATTCGTGTA 59.314 41.667 0.00 0.00 0.00 2.90
5491 5800 5.048364 TGGTATTTCTTTCCACAATCAACGG 60.048 40.000 0.00 0.00 0.00 4.44
5641 6059 3.430218 CACCTTAAACGAGAGCAGAAGTG 59.570 47.826 0.00 0.00 0.00 3.16
5642 6060 2.996621 CCTTAAACGAGAGCAGAAGTGG 59.003 50.000 0.00 0.00 0.00 4.00
5643 6061 3.306088 CCTTAAACGAGAGCAGAAGTGGA 60.306 47.826 0.00 0.00 0.00 4.02
5644 6062 2.156343 AAACGAGAGCAGAAGTGGAC 57.844 50.000 0.00 0.00 0.00 4.02
5645 6063 1.333177 AACGAGAGCAGAAGTGGACT 58.667 50.000 0.00 0.00 0.00 3.85
5646 6064 2.201921 ACGAGAGCAGAAGTGGACTA 57.798 50.000 0.00 0.00 0.00 2.59
5647 6065 2.088423 ACGAGAGCAGAAGTGGACTAG 58.912 52.381 0.00 0.00 0.00 2.57
5648 6066 2.290387 ACGAGAGCAGAAGTGGACTAGA 60.290 50.000 0.00 0.00 0.00 2.43
5649 6067 2.354510 CGAGAGCAGAAGTGGACTAGAG 59.645 54.545 0.00 0.00 0.00 2.43
5650 6068 3.352648 GAGAGCAGAAGTGGACTAGAGT 58.647 50.000 0.00 0.00 0.00 3.24
5651 6069 3.352648 AGAGCAGAAGTGGACTAGAGTC 58.647 50.000 0.00 0.75 44.04 3.36
5652 6070 3.010138 AGAGCAGAAGTGGACTAGAGTCT 59.990 47.826 9.46 0.00 44.20 3.24
5653 6071 3.352648 AGCAGAAGTGGACTAGAGTCTC 58.647 50.000 9.46 0.00 44.20 3.36
5654 6072 3.010138 AGCAGAAGTGGACTAGAGTCTCT 59.990 47.826 7.68 7.68 44.20 3.10
5655 6073 4.226394 AGCAGAAGTGGACTAGAGTCTCTA 59.774 45.833 9.28 9.28 44.20 2.43
5656 6074 4.944930 GCAGAAGTGGACTAGAGTCTCTAA 59.055 45.833 10.79 0.00 44.20 2.10
5657 6075 5.592688 GCAGAAGTGGACTAGAGTCTCTAAT 59.407 44.000 10.79 0.34 44.20 1.73
5658 6076 6.096282 GCAGAAGTGGACTAGAGTCTCTAATT 59.904 42.308 10.79 1.15 44.20 1.40
5659 6077 7.681065 GCAGAAGTGGACTAGAGTCTCTAATTC 60.681 44.444 10.79 9.59 44.20 2.17
5660 6078 6.831868 AGAAGTGGACTAGAGTCTCTAATTCC 59.168 42.308 21.09 21.09 44.20 3.01
5661 6079 5.127491 AGTGGACTAGAGTCTCTAATTCCG 58.873 45.833 21.78 10.41 44.20 4.30
5662 6080 3.884091 TGGACTAGAGTCTCTAATTCCGC 59.116 47.826 21.78 8.74 44.20 5.54
5663 6081 4.139038 GGACTAGAGTCTCTAATTCCGCT 58.861 47.826 16.40 0.00 44.20 5.52
5664 6082 4.214758 GGACTAGAGTCTCTAATTCCGCTC 59.785 50.000 16.40 5.13 44.20 5.03
5665 6083 4.139038 ACTAGAGTCTCTAATTCCGCTCC 58.861 47.826 10.79 0.00 0.00 4.70
5666 6084 2.312390 AGAGTCTCTAATTCCGCTCCC 58.688 52.381 0.00 0.00 0.00 4.30
5667 6085 1.341852 GAGTCTCTAATTCCGCTCCCC 59.658 57.143 0.00 0.00 0.00 4.81
5668 6086 1.062810 AGTCTCTAATTCCGCTCCCCT 60.063 52.381 0.00 0.00 0.00 4.79
5669 6087 1.341852 GTCTCTAATTCCGCTCCCCTC 59.658 57.143 0.00 0.00 0.00 4.30
5670 6088 1.218196 TCTCTAATTCCGCTCCCCTCT 59.782 52.381 0.00 0.00 0.00 3.69
5671 6089 1.616374 CTCTAATTCCGCTCCCCTCTC 59.384 57.143 0.00 0.00 0.00 3.20
5672 6090 0.315568 CTAATTCCGCTCCCCTCTCG 59.684 60.000 0.00 0.00 0.00 4.04
5673 6091 1.745320 TAATTCCGCTCCCCTCTCGC 61.745 60.000 0.00 0.00 0.00 5.03
5678 6096 4.856607 GCTCCCCTCTCGCGAACG 62.857 72.222 11.33 3.52 42.01 3.95
5679 6097 4.856607 CTCCCCTCTCGCGAACGC 62.857 72.222 11.33 9.20 39.84 4.84
5690 6108 4.570663 CGAACGCCCCGCTCCTAG 62.571 72.222 0.00 0.00 0.00 3.02
5691 6109 4.222847 GAACGCCCCGCTCCTAGG 62.223 72.222 0.82 0.82 0.00 3.02
5697 6115 3.162154 CCCGCTCCTAGGGTTCCC 61.162 72.222 9.46 0.00 43.89 3.97
5698 6116 2.041819 CCGCTCCTAGGGTTCCCT 60.042 66.667 15.19 15.19 40.06 4.20
5699 6117 2.134933 CCGCTCCTAGGGTTCCCTC 61.135 68.421 14.24 0.00 37.64 4.30
5700 6118 2.491022 CGCTCCTAGGGTTCCCTCG 61.491 68.421 14.24 8.04 37.64 4.63
5701 6119 2.798364 GCTCCTAGGGTTCCCTCGC 61.798 68.421 14.24 9.19 37.64 5.03
5702 6120 2.042230 TCCTAGGGTTCCCTCGCC 60.042 66.667 14.24 0.00 37.64 5.54
5703 6121 3.537874 CCTAGGGTTCCCTCGCCG 61.538 72.222 14.24 2.12 37.64 6.46
5704 6122 4.222847 CTAGGGTTCCCTCGCCGC 62.223 72.222 14.24 0.00 37.64 6.53
5723 6141 4.893601 GCTAGCCGGAACCCGCTC 62.894 72.222 5.05 0.00 46.86 5.03
5724 6142 4.222847 CTAGCCGGAACCCGCTCC 62.223 72.222 5.05 0.00 46.86 4.70
5729 6147 4.468689 CGGAACCCGCTCCCCTTC 62.469 72.222 0.00 0.00 41.17 3.46
5730 6148 4.111053 GGAACCCGCTCCCCTTCC 62.111 72.222 0.00 0.00 0.00 3.46
5731 6149 4.111053 GAACCCGCTCCCCTTCCC 62.111 72.222 0.00 0.00 0.00 3.97
5738 6156 3.711782 CTCCCCTTCCCCTCCCCT 61.712 72.222 0.00 0.00 0.00 4.79
5739 6157 2.204885 TCCCCTTCCCCTCCCCTA 60.205 66.667 0.00 0.00 0.00 3.53
5740 6158 2.039724 CCCCTTCCCCTCCCCTAC 60.040 72.222 0.00 0.00 0.00 3.18
5741 6159 2.039724 CCCTTCCCCTCCCCTACC 60.040 72.222 0.00 0.00 0.00 3.18
5742 6160 2.039724 CCTTCCCCTCCCCTACCC 60.040 72.222 0.00 0.00 0.00 3.69
5743 6161 2.039724 CTTCCCCTCCCCTACCCC 60.040 72.222 0.00 0.00 0.00 4.95
5744 6162 2.545293 TTCCCCTCCCCTACCCCT 60.545 66.667 0.00 0.00 0.00 4.79
5745 6163 2.623297 CTTCCCCTCCCCTACCCCTC 62.623 70.000 0.00 0.00 0.00 4.30
5746 6164 4.188511 CCCCTCCCCTACCCCTCC 62.189 77.778 0.00 0.00 0.00 4.30
5747 6165 4.188511 CCCTCCCCTACCCCTCCC 62.189 77.778 0.00 0.00 0.00 4.30
5748 6166 3.043404 CCTCCCCTACCCCTCCCT 61.043 72.222 0.00 0.00 0.00 4.20
5749 6167 2.658404 CCTCCCCTACCCCTCCCTT 61.658 68.421 0.00 0.00 0.00 3.95
5750 6168 1.074395 CTCCCCTACCCCTCCCTTC 60.074 68.421 0.00 0.00 0.00 3.46
5751 6169 2.039724 CCCCTACCCCTCCCTTCC 60.040 72.222 0.00 0.00 0.00 3.46
5752 6170 2.039724 CCCTACCCCTCCCTTCCC 60.040 72.222 0.00 0.00 0.00 3.97
5753 6171 2.658404 CCCTACCCCTCCCTTCCCT 61.658 68.421 0.00 0.00 0.00 4.20
5754 6172 1.400711 CCTACCCCTCCCTTCCCTT 59.599 63.158 0.00 0.00 0.00 3.95
5755 6173 0.694783 CCTACCCCTCCCTTCCCTTC 60.695 65.000 0.00 0.00 0.00 3.46
5756 6174 0.694783 CTACCCCTCCCTTCCCTTCC 60.695 65.000 0.00 0.00 0.00 3.46
5757 6175 2.204459 TACCCCTCCCTTCCCTTCCC 62.204 65.000 0.00 0.00 0.00 3.97
5758 6176 2.696504 CCCTCCCTTCCCTTCCCC 60.697 72.222 0.00 0.00 0.00 4.81
5759 6177 3.090532 CCTCCCTTCCCTTCCCCG 61.091 72.222 0.00 0.00 0.00 5.73
5760 6178 2.285442 CTCCCTTCCCTTCCCCGT 60.285 66.667 0.00 0.00 0.00 5.28
5761 6179 1.002533 CTCCCTTCCCTTCCCCGTA 59.997 63.158 0.00 0.00 0.00 4.02
5762 6180 1.306397 TCCCTTCCCTTCCCCGTAC 60.306 63.158 0.00 0.00 0.00 3.67
5763 6181 2.372890 CCCTTCCCTTCCCCGTACC 61.373 68.421 0.00 0.00 0.00 3.34
5764 6182 2.372890 CCTTCCCTTCCCCGTACCC 61.373 68.421 0.00 0.00 0.00 3.69
5765 6183 2.285592 TTCCCTTCCCCGTACCCC 60.286 66.667 0.00 0.00 0.00 4.95
5766 6184 3.948926 TTCCCTTCCCCGTACCCCC 62.949 68.421 0.00 0.00 0.00 5.40
5816 6234 4.214327 CCCTTCGCCGCTCCTCTC 62.214 72.222 0.00 0.00 0.00 3.20
5817 6235 4.214327 CCTTCGCCGCTCCTCTCC 62.214 72.222 0.00 0.00 0.00 3.71
5818 6236 4.560856 CTTCGCCGCTCCTCTCCG 62.561 72.222 0.00 0.00 0.00 4.63
5921 6339 4.659172 CTGCCCTTCCCCACGCAA 62.659 66.667 0.00 0.00 0.00 4.85
5925 6343 4.351054 CCTTCCCCACGCAAGGCT 62.351 66.667 0.00 0.00 46.39 4.58
5926 6344 2.747855 CTTCCCCACGCAAGGCTC 60.748 66.667 0.00 0.00 46.39 4.70
5927 6345 4.344865 TTCCCCACGCAAGGCTCC 62.345 66.667 0.00 0.00 46.39 4.70
5930 6348 4.785453 CCCACGCAAGGCTCCCTC 62.785 72.222 0.00 0.00 46.39 4.30
5931 6349 4.785453 CCACGCAAGGCTCCCTCC 62.785 72.222 0.00 0.00 46.39 4.30
5932 6350 3.710722 CACGCAAGGCTCCCTCCT 61.711 66.667 0.00 0.00 46.39 3.69
5933 6351 3.710722 ACGCAAGGCTCCCTCCTG 61.711 66.667 0.00 0.00 46.39 3.86
5935 6353 3.726144 GCAAGGCTCCCTCCTGCT 61.726 66.667 0.00 0.00 36.38 4.24
5936 6354 2.588989 CAAGGCTCCCTCCTGCTC 59.411 66.667 0.00 0.00 36.38 4.26
5937 6355 3.080121 AAGGCTCCCTCCTGCTCG 61.080 66.667 0.00 0.00 36.38 5.03
5940 6358 3.844090 GCTCCCTCCTGCTCGGAC 61.844 72.222 0.00 0.00 36.69 4.79
5941 6359 3.522731 CTCCCTCCTGCTCGGACG 61.523 72.222 0.00 0.00 36.69 4.79
5944 6362 4.135153 CCTCCTGCTCGGACGGTG 62.135 72.222 0.00 0.00 36.69 4.94
5945 6363 4.135153 CTCCTGCTCGGACGGTGG 62.135 72.222 0.00 0.00 36.69 4.61
5946 6364 4.988716 TCCTGCTCGGACGGTGGT 62.989 66.667 0.00 0.00 36.69 4.16
5947 6365 4.742201 CCTGCTCGGACGGTGGTG 62.742 72.222 0.00 0.00 33.16 4.17
5948 6366 4.742201 CTGCTCGGACGGTGGTGG 62.742 72.222 0.00 0.00 0.00 4.61
5951 6369 4.003788 CTCGGACGGTGGTGGCTT 62.004 66.667 0.00 0.00 0.00 4.35
5952 6370 4.308458 TCGGACGGTGGTGGCTTG 62.308 66.667 0.00 0.00 0.00 4.01
6071 6489 3.434319 GCGGTGGTGATGTGGCTG 61.434 66.667 0.00 0.00 0.00 4.85
6072 6490 2.747460 CGGTGGTGATGTGGCTGG 60.747 66.667 0.00 0.00 0.00 4.85
6073 6491 3.064324 GGTGGTGATGTGGCTGGC 61.064 66.667 0.00 0.00 0.00 4.85
6074 6492 3.434319 GTGGTGATGTGGCTGGCG 61.434 66.667 0.00 0.00 0.00 5.69
6075 6493 4.720902 TGGTGATGTGGCTGGCGG 62.721 66.667 0.00 0.00 0.00 6.13
6096 6514 2.844362 CCGCCCAGCCCAGATCTA 60.844 66.667 0.00 0.00 0.00 1.98
6097 6515 2.739784 CGCCCAGCCCAGATCTAG 59.260 66.667 0.00 0.00 0.00 2.43
6098 6516 2.876945 CGCCCAGCCCAGATCTAGG 61.877 68.421 2.31 2.31 0.00 3.02
6103 6521 3.994000 GCCCAGATCTAGGCCCTT 58.006 61.111 20.41 0.00 43.76 3.95
6104 6522 2.235570 GCCCAGATCTAGGCCCTTT 58.764 57.895 20.41 0.00 43.76 3.11
6105 6523 0.553333 GCCCAGATCTAGGCCCTTTT 59.447 55.000 20.41 0.00 43.76 2.27
6106 6524 1.752084 GCCCAGATCTAGGCCCTTTTG 60.752 57.143 20.41 0.20 43.76 2.44
6107 6525 1.133668 CCCAGATCTAGGCCCTTTTGG 60.134 57.143 0.00 0.00 39.97 3.28
6117 6535 4.039042 CCTTTTGGGCCCATCTGG 57.961 61.111 29.23 22.92 35.46 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 183 5.800438 GCCTCTCGCGAAAGAAAATAAAAAT 59.200 36.000 11.91 0.00 0.00 1.82
174 184 5.151389 GCCTCTCGCGAAAGAAAATAAAAA 58.849 37.500 11.91 0.00 0.00 1.94
179 189 1.464997 GTGCCTCTCGCGAAAGAAAAT 59.535 47.619 11.91 0.00 42.08 1.82
204 215 2.343758 TGCCTCTCACGGAAGCAC 59.656 61.111 0.00 0.00 36.58 4.40
443 464 2.163818 ACCTCTCGCGAAATCACAAA 57.836 45.000 11.33 0.00 0.00 2.83
462 483 2.263540 GAAAGAGGCACGCCCGTA 59.736 61.111 3.95 0.00 39.21 4.02
678 706 0.472471 TCGCAACCTGGGAGTTTTCT 59.528 50.000 0.00 0.00 34.23 2.52
929 1122 4.095946 AGTCAAAGCTCAGAGAGGAGATT 58.904 43.478 0.00 0.00 44.76 2.40
1428 1622 4.109766 GCCCAAGTTCGCATAATAAAACC 58.890 43.478 0.00 0.00 0.00 3.27
1452 1646 6.109156 TGAACAGTAGAGTGAAAATAGGCA 57.891 37.500 0.00 0.00 0.00 4.75
1528 1722 4.460263 AGCACAGGTAACAACTTCATCAA 58.540 39.130 0.00 0.00 41.41 2.57
1645 1839 9.967451 TTCTATGATTTACAAGTCCAAATACCA 57.033 29.630 0.00 0.00 0.00 3.25
1697 1893 6.425417 TCGAACAACATATTTTACACTGCAGA 59.575 34.615 23.35 0.00 0.00 4.26
1727 1923 2.606725 GCATCACTCAGAAGACATTCCG 59.393 50.000 0.00 0.00 35.94 4.30
1899 2095 0.951558 GATCTGTGTTGGCCGTTGTT 59.048 50.000 0.00 0.00 0.00 2.83
1904 2100 0.670546 AGAACGATCTGTGTTGGCCG 60.671 55.000 0.00 0.00 33.59 6.13
2048 2244 7.874940 TGCAGTGGACAAAAATATATATCAGC 58.125 34.615 0.00 0.00 0.00 4.26
2139 2337 7.067372 TCAGGAATGCACATAAGAATTGGTTAG 59.933 37.037 0.00 0.00 0.00 2.34
2305 2503 6.330278 GGAATAGGTTGCTGGATAACAAAAC 58.670 40.000 0.00 0.00 0.00 2.43
2334 2532 7.718753 TCATTTTCCACATAAAACTTGGCATTT 59.281 29.630 0.00 0.00 31.50 2.32
2370 2568 3.347216 CATTGTACCACTGGCTAAAGCT 58.653 45.455 1.39 0.00 41.70 3.74
2686 2884 5.552178 AGAGTAAAGGGCAACTGAAGTTAG 58.448 41.667 0.00 0.00 36.32 2.34
2757 2957 9.869844 GATCAATACTTCCAAGAAATGAATACG 57.130 33.333 0.00 0.00 0.00 3.06
2758 2958 9.869844 CGATCAATACTTCCAAGAAATGAATAC 57.130 33.333 0.00 0.00 0.00 1.89
2779 2979 8.595362 ATGGATTCCTACATAGATAACGATCA 57.405 34.615 3.95 0.00 34.17 2.92
3177 3382 1.823797 AGAGTACGTGTGAGAGGACC 58.176 55.000 0.00 0.00 0.00 4.46
3247 3452 3.769739 ACACTATCAGCCAACAGTTCA 57.230 42.857 0.00 0.00 0.00 3.18
3432 3637 6.017109 ACACCATCTTCAGTTGTCACATTTAC 60.017 38.462 0.00 0.00 0.00 2.01
3463 3668 8.752005 AAGGTTTATGTATACACTGATGCAAT 57.248 30.769 7.96 0.00 0.00 3.56
3608 3813 4.378459 CGGTGCCATCTTTCTAAGTGTTTC 60.378 45.833 0.00 0.00 0.00 2.78
3680 3885 8.139989 GCTAAAGCATTGGACAATTCTCATAAT 58.860 33.333 0.00 0.00 41.59 1.28
4254 4460 0.605589 AAGCCTCTAACAACCCGCAC 60.606 55.000 0.00 0.00 0.00 5.34
4353 4559 1.535462 CTGTACAGTGAAAAAGGCCCG 59.465 52.381 15.06 0.00 0.00 6.13
4414 4620 6.113411 GTCCCATTTCTTATTTCCTTCGAGA 58.887 40.000 0.00 0.00 0.00 4.04
4537 4743 3.624777 TCCCCAGAGAATTGCAAAGATC 58.375 45.455 1.71 2.47 0.00 2.75
4538 4744 3.744940 TCCCCAGAGAATTGCAAAGAT 57.255 42.857 1.71 0.00 0.00 2.40
4556 4775 4.381292 CCAAAGCCTCAGAATGTTCAATCC 60.381 45.833 0.00 0.00 37.40 3.01
4593 4812 9.166173 CTTGGACTTCAATATCATAACTGAACA 57.834 33.333 0.00 0.00 32.92 3.18
4762 4981 2.939460 AGCTCACAACAACAACCAAC 57.061 45.000 0.00 0.00 0.00 3.77
4765 5012 5.183140 ACCATATTAGCTCACAACAACAACC 59.817 40.000 0.00 0.00 0.00 3.77
4925 5220 5.783111 AGTTTTGCAATCCATCCAACTTAC 58.217 37.500 0.00 0.00 0.00 2.34
5019 5314 3.430218 GCACACTATAACGCCAGATCATC 59.570 47.826 0.00 0.00 0.00 2.92
5101 5397 6.091986 GTCAGAACAAGAATCAAGATCCAGTC 59.908 42.308 0.00 0.00 0.00 3.51
5193 5490 5.934781 TCAATAAACCAAACAGGCCAAAAT 58.065 33.333 5.01 0.00 43.14 1.82
5268 5565 3.598019 AAAGGCTGTAATTGGTGCATG 57.402 42.857 0.00 0.00 0.00 4.06
5294 5600 7.492669 TCAATTAGATGCAAGCTGTACTTAGAC 59.507 37.037 0.00 0.00 36.04 2.59
5307 5613 6.350361 CCCAACATCAACTCAATTAGATGCAA 60.350 38.462 0.00 0.00 41.08 4.08
5401 5707 4.145997 CCTGGAAAACGACGAAATAAACG 58.854 43.478 0.00 0.00 0.00 3.60
5410 5716 2.733026 ACGAATAACCTGGAAAACGACG 59.267 45.455 0.00 0.00 0.00 5.12
5434 5740 1.166129 CGTATCCATCGGATCGTCCT 58.834 55.000 0.00 0.00 42.11 3.85
5491 5800 2.010145 TTATCTCAAGTGAGCCACGC 57.990 50.000 3.30 0.00 41.80 5.34
5540 5849 5.126108 TCTCTTTTGAATATTTCGTCGCG 57.874 39.130 0.00 0.00 0.00 5.87
5592 5956 1.547372 CTGAAGATGCCAACCCCTTTG 59.453 52.381 0.00 0.00 34.63 2.77
5595 5959 1.000396 GCTGAAGATGCCAACCCCT 60.000 57.895 0.00 0.00 0.00 4.79
5641 6059 4.139038 AGCGGAATTAGAGACTCTAGTCC 58.861 47.826 22.94 22.94 45.85 3.85
5642 6060 4.214758 GGAGCGGAATTAGAGACTCTAGTC 59.785 50.000 11.94 12.74 45.08 2.59
5643 6061 4.139038 GGAGCGGAATTAGAGACTCTAGT 58.861 47.826 11.94 6.97 29.56 2.57
5644 6062 3.504520 GGGAGCGGAATTAGAGACTCTAG 59.495 52.174 11.94 2.31 29.56 2.43
5645 6063 3.488363 GGGAGCGGAATTAGAGACTCTA 58.512 50.000 8.17 8.17 0.00 2.43
5646 6064 2.312390 GGGAGCGGAATTAGAGACTCT 58.688 52.381 10.47 10.47 0.00 3.24
5647 6065 1.341852 GGGGAGCGGAATTAGAGACTC 59.658 57.143 0.00 0.00 0.00 3.36
5648 6066 1.062810 AGGGGAGCGGAATTAGAGACT 60.063 52.381 0.00 0.00 0.00 3.24
5649 6067 1.341852 GAGGGGAGCGGAATTAGAGAC 59.658 57.143 0.00 0.00 0.00 3.36
5650 6068 1.218196 AGAGGGGAGCGGAATTAGAGA 59.782 52.381 0.00 0.00 0.00 3.10
5651 6069 1.616374 GAGAGGGGAGCGGAATTAGAG 59.384 57.143 0.00 0.00 0.00 2.43
5652 6070 1.705873 GAGAGGGGAGCGGAATTAGA 58.294 55.000 0.00 0.00 0.00 2.10
5653 6071 0.315568 CGAGAGGGGAGCGGAATTAG 59.684 60.000 0.00 0.00 0.00 1.73
5654 6072 1.745320 GCGAGAGGGGAGCGGAATTA 61.745 60.000 0.00 0.00 0.00 1.40
5655 6073 3.095347 GCGAGAGGGGAGCGGAATT 62.095 63.158 0.00 0.00 0.00 2.17
5656 6074 3.541713 GCGAGAGGGGAGCGGAAT 61.542 66.667 0.00 0.00 0.00 3.01
5661 6079 4.856607 CGTTCGCGAGAGGGGAGC 62.857 72.222 9.59 0.00 44.71 4.70
5662 6080 4.856607 GCGTTCGCGAGAGGGGAG 62.857 72.222 9.59 0.00 44.71 4.30
5673 6091 4.570663 CTAGGAGCGGGGCGTTCG 62.571 72.222 0.00 0.00 37.94 3.95
5674 6092 4.222847 CCTAGGAGCGGGGCGTTC 62.223 72.222 1.05 0.00 36.42 3.95
5678 6096 3.862991 GAACCCTAGGAGCGGGGC 61.863 72.222 11.48 0.00 46.40 5.80
5679 6097 3.162154 GGAACCCTAGGAGCGGGG 61.162 72.222 11.48 0.00 46.40 5.73
5713 6131 4.111053 GGAAGGGGAGCGGGTTCC 62.111 72.222 0.00 0.00 36.46 3.62
5714 6132 4.111053 GGGAAGGGGAGCGGGTTC 62.111 72.222 0.00 0.00 0.00 3.62
5721 6139 2.341677 TAGGGGAGGGGAAGGGGAG 61.342 68.421 0.00 0.00 0.00 4.30
5722 6140 2.204885 TAGGGGAGGGGAAGGGGA 60.205 66.667 0.00 0.00 0.00 4.81
5723 6141 2.039724 GTAGGGGAGGGGAAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
5724 6142 2.039724 GGTAGGGGAGGGGAAGGG 60.040 72.222 0.00 0.00 0.00 3.95
5725 6143 2.039724 GGGTAGGGGAGGGGAAGG 60.040 72.222 0.00 0.00 0.00 3.46
5726 6144 2.039724 GGGGTAGGGGAGGGGAAG 60.040 72.222 0.00 0.00 0.00 3.46
5727 6145 2.545293 AGGGGTAGGGGAGGGGAA 60.545 66.667 0.00 0.00 0.00 3.97
5728 6146 3.040814 GAGGGGTAGGGGAGGGGA 61.041 72.222 0.00 0.00 0.00 4.81
5729 6147 4.188511 GGAGGGGTAGGGGAGGGG 62.189 77.778 0.00 0.00 0.00 4.79
5730 6148 4.188511 GGGAGGGGTAGGGGAGGG 62.189 77.778 0.00 0.00 0.00 4.30
5731 6149 2.623297 GAAGGGAGGGGTAGGGGAGG 62.623 70.000 0.00 0.00 0.00 4.30
5732 6150 1.074395 GAAGGGAGGGGTAGGGGAG 60.074 68.421 0.00 0.00 0.00 4.30
5733 6151 2.654204 GGAAGGGAGGGGTAGGGGA 61.654 68.421 0.00 0.00 0.00 4.81
5734 6152 2.039724 GGAAGGGAGGGGTAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
5735 6153 2.039724 GGGAAGGGAGGGGTAGGG 60.040 72.222 0.00 0.00 0.00 3.53
5736 6154 0.694783 GAAGGGAAGGGAGGGGTAGG 60.695 65.000 0.00 0.00 0.00 3.18
5737 6155 0.694783 GGAAGGGAAGGGAGGGGTAG 60.695 65.000 0.00 0.00 0.00 3.18
5738 6156 1.399057 GGAAGGGAAGGGAGGGGTA 59.601 63.158 0.00 0.00 0.00 3.69
5739 6157 2.127528 GGAAGGGAAGGGAGGGGT 59.872 66.667 0.00 0.00 0.00 4.95
5740 6158 2.696504 GGGAAGGGAAGGGAGGGG 60.697 72.222 0.00 0.00 0.00 4.79
5741 6159 2.696504 GGGGAAGGGAAGGGAGGG 60.697 72.222 0.00 0.00 0.00 4.30
5742 6160 2.540842 TACGGGGAAGGGAAGGGAGG 62.541 65.000 0.00 0.00 0.00 4.30
5743 6161 1.002533 TACGGGGAAGGGAAGGGAG 59.997 63.158 0.00 0.00 0.00 4.30
5744 6162 1.306397 GTACGGGGAAGGGAAGGGA 60.306 63.158 0.00 0.00 0.00 4.20
5745 6163 2.372890 GGTACGGGGAAGGGAAGGG 61.373 68.421 0.00 0.00 0.00 3.95
5746 6164 2.372890 GGGTACGGGGAAGGGAAGG 61.373 68.421 0.00 0.00 0.00 3.46
5747 6165 2.372890 GGGGTACGGGGAAGGGAAG 61.373 68.421 0.00 0.00 0.00 3.46
5748 6166 2.285592 GGGGTACGGGGAAGGGAA 60.286 66.667 0.00 0.00 0.00 3.97
5749 6167 4.419900 GGGGGTACGGGGAAGGGA 62.420 72.222 0.00 0.00 0.00 4.20
5799 6217 4.214327 GAGAGGAGCGGCGAAGGG 62.214 72.222 12.98 0.00 0.00 3.95
5800 6218 4.214327 GGAGAGGAGCGGCGAAGG 62.214 72.222 12.98 0.00 0.00 3.46
5801 6219 4.560856 CGGAGAGGAGCGGCGAAG 62.561 72.222 12.98 0.00 0.00 3.79
5904 6322 4.659172 TTGCGTGGGGAAGGGCAG 62.659 66.667 0.00 0.00 36.66 4.85
5905 6323 4.659172 CTTGCGTGGGGAAGGGCA 62.659 66.667 0.00 0.00 37.89 5.36
5909 6327 2.747855 GAGCCTTGCGTGGGGAAG 60.748 66.667 0.00 0.00 40.91 3.46
5910 6328 4.344865 GGAGCCTTGCGTGGGGAA 62.345 66.667 0.00 0.00 0.00 3.97
5913 6331 4.785453 GAGGGAGCCTTGCGTGGG 62.785 72.222 0.00 0.00 31.76 4.61
5914 6332 4.785453 GGAGGGAGCCTTGCGTGG 62.785 72.222 0.00 0.00 31.76 4.94
5915 6333 3.710722 AGGAGGGAGCCTTGCGTG 61.711 66.667 0.00 0.00 33.46 5.34
5916 6334 3.710722 CAGGAGGGAGCCTTGCGT 61.711 66.667 0.00 0.00 35.66 5.24
5918 6336 3.695747 GAGCAGGAGGGAGCCTTGC 62.696 68.421 0.00 0.00 35.66 4.01
5919 6337 2.588989 GAGCAGGAGGGAGCCTTG 59.411 66.667 0.00 0.00 35.66 3.61
5920 6338 3.080121 CGAGCAGGAGGGAGCCTT 61.080 66.667 0.00 0.00 35.66 4.35
5930 6348 4.742201 CACCACCGTCCGAGCAGG 62.742 72.222 0.00 0.00 42.97 4.85
5931 6349 4.742201 CCACCACCGTCCGAGCAG 62.742 72.222 0.00 0.00 0.00 4.24
5934 6352 4.003788 AAGCCACCACCGTCCGAG 62.004 66.667 0.00 0.00 0.00 4.63
5935 6353 4.308458 CAAGCCACCACCGTCCGA 62.308 66.667 0.00 0.00 0.00 4.55
6007 6425 4.436998 GTGTCGAGAGCCACCGGG 62.437 72.222 6.32 0.00 37.18 5.73
6008 6426 4.778415 CGTGTCGAGAGCCACCGG 62.778 72.222 0.00 0.00 0.00 5.28
6009 6427 4.778415 CCGTGTCGAGAGCCACCG 62.778 72.222 0.00 0.00 0.00 4.94
6054 6472 3.434319 CAGCCACATCACCACCGC 61.434 66.667 0.00 0.00 0.00 5.68
6055 6473 2.747460 CCAGCCACATCACCACCG 60.747 66.667 0.00 0.00 0.00 4.94
6056 6474 3.064324 GCCAGCCACATCACCACC 61.064 66.667 0.00 0.00 0.00 4.61
6057 6475 3.434319 CGCCAGCCACATCACCAC 61.434 66.667 0.00 0.00 0.00 4.16
6058 6476 4.720902 CCGCCAGCCACATCACCA 62.721 66.667 0.00 0.00 0.00 4.17
6079 6497 2.844362 TAGATCTGGGCTGGGCGG 60.844 66.667 5.18 0.00 0.00 6.13
6080 6498 2.739784 CTAGATCTGGGCTGGGCG 59.260 66.667 5.18 0.00 0.00 6.13
6081 6499 3.155750 CCTAGATCTGGGCTGGGC 58.844 66.667 12.76 0.00 0.00 5.36
6087 6505 1.133668 CCAAAAGGGCCTAGATCTGGG 60.134 57.143 20.42 20.42 0.00 4.45
6088 6506 1.133668 CCCAAAAGGGCCTAGATCTGG 60.134 57.143 6.41 9.31 34.21 3.86
6089 6507 2.355010 CCCAAAAGGGCCTAGATCTG 57.645 55.000 6.41 0.00 34.21 2.90
6099 6517 1.686800 CCAGATGGGCCCAAAAGGG 60.687 63.158 32.58 23.50 35.41 3.95
6100 6518 4.039042 CCAGATGGGCCCAAAAGG 57.961 61.111 32.58 25.70 39.47 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.