Multiple sequence alignment - TraesCS7D01G306400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G306400 chr7D 100.000 6700 0 0 1 6700 387910585 387917284 0.000000e+00 12373.0
1 TraesCS7D01G306400 chr7D 96.414 251 9 0 4757 5007 155292312 155292562 1.340000e-111 414.0
2 TraesCS7D01G306400 chr7D 96.748 246 8 0 4753 4998 97906043 97905798 1.740000e-110 411.0
3 TraesCS7D01G306400 chr7D 77.215 158 22 8 3 148 8455860 8455705 5.570000e-11 80.5
4 TraesCS7D01G306400 chr7A 94.773 3482 90 44 1253 4651 438140769 438144241 0.000000e+00 5337.0
5 TraesCS7D01G306400 chr7A 93.908 870 45 7 4998 5861 438144370 438145237 0.000000e+00 1306.0
6 TraesCS7D01G306400 chr7A 92.647 748 24 8 513 1248 438140008 438140736 0.000000e+00 1048.0
7 TraesCS7D01G306400 chr7A 83.356 727 60 30 5973 6687 438145340 438146017 3.430000e-172 616.0
8 TraesCS7D01G306400 chr7A 94.059 303 11 5 179 481 438139715 438140010 2.850000e-123 453.0
9 TraesCS7D01G306400 chr7A 80.516 349 59 8 6354 6697 439634096 439634440 6.670000e-65 259.0
10 TraesCS7D01G306400 chr7A 94.366 71 4 0 4652 4722 438144266 438144336 7.100000e-20 110.0
11 TraesCS7D01G306400 chr7B 95.385 3142 62 28 1677 4749 382607020 382610147 0.000000e+00 4922.0
12 TraesCS7D01G306400 chr7B 88.922 1688 115 28 5051 6697 382610152 382611808 0.000000e+00 2015.0
13 TraesCS7D01G306400 chr7B 90.380 1237 64 22 44 1248 382605282 382606495 0.000000e+00 1574.0
14 TraesCS7D01G306400 chr7B 95.718 397 12 3 1253 1649 382606528 382606919 9.480000e-178 634.0
15 TraesCS7D01G306400 chr7B 82.571 350 57 3 6354 6700 384202023 384202371 8.440000e-79 305.0
16 TraesCS7D01G306400 chr7B 95.890 73 3 0 1607 1679 382606920 382606992 1.180000e-22 119.0
17 TraesCS7D01G306400 chr5D 98.776 245 2 1 4755 4998 232412150 232412394 1.030000e-117 435.0
18 TraesCS7D01G306400 chr5D 77.437 359 70 10 5154 5508 454182778 454183129 3.170000e-48 204.0
19 TraesCS7D01G306400 chr5D 85.470 117 16 1 2239 2355 127270358 127270243 3.280000e-23 121.0
20 TraesCS7D01G306400 chr5D 80.800 125 24 0 5149 5273 84870058 84870182 1.540000e-16 99.0
21 TraesCS7D01G306400 chr5D 78.981 157 23 3 3 149 319266839 319266995 1.540000e-16 99.0
22 TraesCS7D01G306400 chr1A 97.600 250 6 0 4755 5004 195177512 195177263 4.800000e-116 429.0
23 TraesCS7D01G306400 chr3A 97.541 244 6 0 4755 4998 424205319 424205562 1.040000e-112 418.0
24 TraesCS7D01G306400 chr3A 87.079 178 21 2 2184 2360 116533126 116532950 4.100000e-47 200.0
25 TraesCS7D01G306400 chr3A 81.618 136 25 0 6178 6313 512578785 512578920 5.490000e-21 113.0
26 TraesCS7D01G306400 chr3A 87.179 78 8 2 2174 2250 195455464 195455388 3.330000e-13 87.9
27 TraesCS7D01G306400 chr5B 96.000 250 9 1 4753 5001 253881830 253882079 8.090000e-109 405.0
28 TraesCS7D01G306400 chr5B 77.128 376 75 10 5137 5508 555154278 555154646 2.450000e-49 207.0
29 TraesCS7D01G306400 chr5B 85.470 117 16 1 2239 2355 140749377 140749262 3.280000e-23 121.0
30 TraesCS7D01G306400 chr5B 79.412 136 26 2 5149 5282 91931534 91931669 1.990000e-15 95.3
31 TraesCS7D01G306400 chr5B 88.525 61 5 2 3043 3103 680856461 680856519 9.320000e-09 73.1
32 TraesCS7D01G306400 chr2A 94.656 262 10 4 4753 5012 581174588 581174329 2.910000e-108 403.0
33 TraesCS7D01G306400 chr2A 94.595 259 11 3 4757 5013 544306559 544306302 1.350000e-106 398.0
34 TraesCS7D01G306400 chr2A 88.202 178 16 2 2184 2357 155590906 155591082 2.450000e-49 207.0
35 TraesCS7D01G306400 chr1B 94.841 252 11 2 4755 5006 388625641 388625890 6.300000e-105 392.0
36 TraesCS7D01G306400 chr1B 81.351 370 59 9 6331 6696 539467435 539467072 6.570000e-75 292.0
37 TraesCS7D01G306400 chr1D 85.054 368 50 4 6331 6696 401438391 401438027 2.950000e-98 370.0
38 TraesCS7D01G306400 chr1D 94.000 50 3 0 3053 3102 19340756 19340805 7.200000e-10 76.8
39 TraesCS7D01G306400 chrUn 82.038 373 63 3 6331 6700 40899424 40899053 1.400000e-81 315.0
40 TraesCS7D01G306400 chrUn 82.162 370 62 3 6331 6697 333713437 333713805 1.400000e-81 315.0
41 TraesCS7D01G306400 chr6D 82.111 341 56 4 6353 6689 454924778 454924439 3.060000e-73 287.0
42 TraesCS7D01G306400 chr3D 81.197 351 63 2 6337 6685 558570141 558569792 5.120000e-71 279.0
43 TraesCS7D01G306400 chr3D 84.733 131 20 0 6188 6318 558570442 558570312 1.520000e-26 132.0
44 TraesCS7D01G306400 chr2D 89.080 174 18 1 2184 2357 147232818 147232646 1.460000e-51 215.0
45 TraesCS7D01G306400 chr2D 88.506 174 19 1 2184 2357 342099633 342099805 6.810000e-50 209.0
46 TraesCS7D01G306400 chr4B 86.628 172 21 2 2184 2355 33630778 33630947 8.870000e-44 189.0
47 TraesCS7D01G306400 chr4B 95.833 48 2 0 3058 3105 49466850 49466803 2.000000e-10 78.7
48 TraesCS7D01G306400 chr6A 91.071 112 10 0 6177 6288 33553904 33554015 1.160000e-32 152.0
49 TraesCS7D01G306400 chr4D 88.393 112 10 2 6178 6288 84999671 84999780 1.520000e-26 132.0
50 TraesCS7D01G306400 chr4D 84.167 120 19 0 6192 6311 502077006 502077125 4.250000e-22 117.0
51 TraesCS7D01G306400 chr2B 87.387 111 14 0 6177 6287 37230891 37231001 1.960000e-25 128.0
52 TraesCS7D01G306400 chr2B 85.586 111 16 0 6177 6287 37214327 37214437 4.250000e-22 117.0
53 TraesCS7D01G306400 chr2B 85.586 111 16 0 6177 6287 37248049 37248159 4.250000e-22 117.0
54 TraesCS7D01G306400 chr2B 89.394 66 6 1 3 67 641652210 641652275 1.550000e-11 82.4
55 TraesCS7D01G306400 chr4A 89.109 101 7 4 6184 6283 498680194 498680291 9.120000e-24 122.0
56 TraesCS7D01G306400 chr4A 97.778 45 1 0 3058 3102 629375401 629375445 2.000000e-10 78.7
57 TraesCS7D01G306400 chr5A 80.800 125 24 0 5149 5273 79264080 79264204 1.540000e-16 99.0
58 TraesCS7D01G306400 chr5A 97.778 45 1 0 3058 3102 547648783 547648827 2.000000e-10 78.7
59 TraesCS7D01G306400 chr3B 87.179 78 8 2 2174 2250 239901110 239901034 3.330000e-13 87.9
60 TraesCS7D01G306400 chr3B 97.872 47 1 0 3058 3104 423807381 423807427 1.550000e-11 82.4
61 TraesCS7D01G306400 chr6B 95.918 49 2 0 3058 3106 135867584 135867632 5.570000e-11 80.5
62 TraesCS7D01G306400 chr6B 85.714 63 8 1 86 148 402204435 402204374 1.560000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G306400 chr7D 387910585 387917284 6699 False 12373.000000 12373 100.000000 1 6700 1 chr7D.!!$F2 6699
1 TraesCS7D01G306400 chr7A 438139715 438146017 6302 False 1478.333333 5337 92.184833 179 6687 6 chr7A.!!$F2 6508
2 TraesCS7D01G306400 chr7B 382605282 382611808 6526 False 1852.800000 4922 93.259000 44 6697 5 chr7B.!!$F2 6653
3 TraesCS7D01G306400 chr3D 558569792 558570442 650 True 205.500000 279 82.965000 6188 6685 2 chr3D.!!$R1 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
830 852 0.040425 ATTGAGGTTTTGCGTGCGTC 60.040 50.000 0.00 0.0 0.00 5.19 F
1249 1282 0.603065 GCCATTGGAGTGTTTGTCCC 59.397 55.000 6.95 0.0 32.49 4.46 F
2177 2334 0.698238 TAATGTGCCTGGAGCTGGTT 59.302 50.000 0.00 0.0 44.23 3.67 F
2328 2485 2.128035 CGATTAACTGACCGAGATGCC 58.872 52.381 0.00 0.0 0.00 4.40 F
4069 4264 2.092968 TCGGATAGGTTTGCAGCTTGAT 60.093 45.455 0.00 0.0 31.45 2.57 F
4814 5034 0.186630 TGCCTGCCATCCTGCAATAT 59.813 50.000 0.00 0.0 41.51 1.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1822 1961 0.462581 ATGCTCGGCGTGATTGTGAT 60.463 50.000 13.77 0.0 0.00 3.06 R
2220 2377 0.472925 TTGTCCCTACTCAGCACCCA 60.473 55.000 0.00 0.0 0.00 4.51 R
4069 4264 3.121929 AGATCTTCCAGAGTGGCCTTA 57.878 47.619 3.32 0.0 37.47 2.69 R
4390 4585 7.039011 AGTGTTACCTTCAGATAGATGTCAACA 60.039 37.037 0.00 0.0 0.00 3.33 R
4871 5091 0.031010 GGAGAGGGGTGTGGGTATCT 60.031 60.000 0.00 0.0 0.00 1.98 R
6179 6441 0.261696 GCTGGTTATTGGGGATGGGT 59.738 55.000 0.00 0.0 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.656560 GTGGTCTTAGCACGATGACT 57.343 50.000 0.00 0.00 36.84 3.41
29 30 2.960819 GTGGTCTTAGCACGATGACTT 58.039 47.619 0.00 0.00 36.84 3.01
30 31 3.326747 GTGGTCTTAGCACGATGACTTT 58.673 45.455 0.00 0.00 36.84 2.66
31 32 3.368236 GTGGTCTTAGCACGATGACTTTC 59.632 47.826 0.00 0.00 36.84 2.62
32 33 2.599082 GGTCTTAGCACGATGACTTTCG 59.401 50.000 0.00 0.00 44.56 3.46
33 34 2.599082 GTCTTAGCACGATGACTTTCGG 59.401 50.000 0.00 0.00 43.33 4.30
34 35 2.490509 TCTTAGCACGATGACTTTCGGA 59.509 45.455 0.00 0.00 43.33 4.55
35 36 2.273370 TAGCACGATGACTTTCGGAC 57.727 50.000 0.00 0.00 43.33 4.79
36 37 0.603569 AGCACGATGACTTTCGGACT 59.396 50.000 0.00 0.00 43.33 3.85
37 38 0.716108 GCACGATGACTTTCGGACTG 59.284 55.000 0.00 0.00 43.33 3.51
38 39 1.935300 GCACGATGACTTTCGGACTGT 60.935 52.381 0.00 0.00 43.33 3.55
39 40 1.986378 CACGATGACTTTCGGACTGTC 59.014 52.381 0.00 0.00 43.33 3.51
40 41 1.611977 ACGATGACTTTCGGACTGTCA 59.388 47.619 10.38 12.58 43.33 3.58
47 48 4.748102 TGACTTTCGGACTGTCATTACAAC 59.252 41.667 10.38 0.00 36.03 3.32
58 59 6.630071 ACTGTCATTACAACAAGTTTTGCTT 58.370 32.000 0.00 0.00 34.59 3.91
70 71 0.816018 TTTTGCTTGGCTCCGACGAA 60.816 50.000 0.00 0.00 0.00 3.85
71 72 0.605319 TTTGCTTGGCTCCGACGAAT 60.605 50.000 0.00 0.00 0.00 3.34
72 73 1.298157 TTGCTTGGCTCCGACGAATG 61.298 55.000 0.00 0.00 0.00 2.67
76 77 1.541310 TTGGCTCCGACGAATGAGGT 61.541 55.000 0.00 0.00 0.00 3.85
78 79 1.511305 GCTCCGACGAATGAGGTGA 59.489 57.895 0.00 0.00 0.00 4.02
79 80 0.103208 GCTCCGACGAATGAGGTGAT 59.897 55.000 0.00 0.00 0.00 3.06
80 81 1.845266 CTCCGACGAATGAGGTGATG 58.155 55.000 0.00 0.00 0.00 3.07
81 82 1.405463 CTCCGACGAATGAGGTGATGA 59.595 52.381 0.00 0.00 0.00 2.92
82 83 2.031870 TCCGACGAATGAGGTGATGAT 58.968 47.619 0.00 0.00 0.00 2.45
83 84 2.130395 CCGACGAATGAGGTGATGATG 58.870 52.381 0.00 0.00 0.00 3.07
84 85 2.223805 CCGACGAATGAGGTGATGATGA 60.224 50.000 0.00 0.00 0.00 2.92
92 102 0.179000 AGGTGATGATGACCTTCGGC 59.821 55.000 0.00 0.00 41.31 5.54
110 120 1.608590 GGCTTGCTTCAGTGCTTGTAA 59.391 47.619 0.00 0.00 0.00 2.41
114 124 1.464608 TGCTTCAGTGCTTGTAATCGC 59.535 47.619 0.00 0.00 0.00 4.58
122 132 0.249322 GCTTGTAATCGCCGCTAGGA 60.249 55.000 0.00 0.00 41.02 2.94
123 133 1.488527 CTTGTAATCGCCGCTAGGAC 58.511 55.000 0.00 0.00 41.02 3.85
129 139 1.505477 ATCGCCGCTAGGACGTCTAC 61.505 60.000 16.46 0.00 41.02 2.59
131 141 3.020627 CCGCTAGGACGTCTACGG 58.979 66.667 16.46 18.05 44.95 4.02
143 153 3.548770 ACGTCTACGGATCTGGATGTAA 58.451 45.455 6.47 0.00 44.95 2.41
144 154 3.564644 ACGTCTACGGATCTGGATGTAAG 59.435 47.826 6.47 0.00 44.95 2.34
151 161 5.661458 ACGGATCTGGATGTAAGTTTACTG 58.339 41.667 6.47 0.00 34.77 2.74
161 171 8.380099 TGGATGTAAGTTTACTGTTCCTTGTAT 58.620 33.333 14.45 0.00 34.77 2.29
162 172 8.880750 GGATGTAAGTTTACTGTTCCTTGTATC 58.119 37.037 3.91 0.00 34.77 2.24
163 173 7.878477 TGTAAGTTTACTGTTCCTTGTATCG 57.122 36.000 3.91 0.00 34.77 2.92
164 174 7.660112 TGTAAGTTTACTGTTCCTTGTATCGA 58.340 34.615 3.91 0.00 34.77 3.59
165 175 8.143193 TGTAAGTTTACTGTTCCTTGTATCGAA 58.857 33.333 0.00 0.00 34.77 3.71
187 199 7.495934 TCGAAGATGAATAGATTGGAAGGTTTC 59.504 37.037 0.00 0.00 0.00 2.78
280 295 1.002792 CTGCCTTCCTCCTCCTCCT 59.997 63.158 0.00 0.00 0.00 3.69
492 510 2.158460 CCAACAAACCTTCCTCCTCCTT 60.158 50.000 0.00 0.00 0.00 3.36
494 512 1.705745 ACAAACCTTCCTCCTCCTTCC 59.294 52.381 0.00 0.00 0.00 3.46
555 576 1.834263 CCTCATCTTCTTCTTCCGGGT 59.166 52.381 0.00 0.00 0.00 5.28
556 577 2.159028 CCTCATCTTCTTCTTCCGGGTC 60.159 54.545 0.00 0.00 0.00 4.46
557 578 1.831736 TCATCTTCTTCTTCCGGGTCC 59.168 52.381 0.00 0.00 0.00 4.46
558 579 0.824759 ATCTTCTTCTTCCGGGTCCG 59.175 55.000 0.00 1.86 39.44 4.79
598 619 3.467226 GTCGGGATCTTGGGCGGA 61.467 66.667 0.00 0.00 0.00 5.54
676 697 3.440415 GCCGGCCCTTCTTTTCCG 61.440 66.667 18.11 0.00 41.41 4.30
777 799 3.181967 CGCTCTTCGCCTTCCACG 61.182 66.667 0.00 0.00 34.21 4.94
809 831 0.257616 CTCGGGGGATTTTGGGCTAA 59.742 55.000 0.00 0.00 0.00 3.09
830 852 0.040425 ATTGAGGTTTTGCGTGCGTC 60.040 50.000 0.00 0.00 0.00 5.19
871 893 7.615403 AGTGCTTTCCTTTTCTCTTTTCTTTT 58.385 30.769 0.00 0.00 0.00 2.27
1219 1252 5.190992 TGCTCTATTTGCTGCCATAATTG 57.809 39.130 0.00 0.00 0.00 2.32
1220 1253 4.888823 TGCTCTATTTGCTGCCATAATTGA 59.111 37.500 0.00 0.95 0.00 2.57
1223 1256 6.516194 GCTCTATTTGCTGCCATAATTGACAT 60.516 38.462 0.00 0.00 0.00 3.06
1224 1257 7.350744 TCTATTTGCTGCCATAATTGACATT 57.649 32.000 0.00 0.00 0.00 2.71
1225 1258 7.784037 TCTATTTGCTGCCATAATTGACATTT 58.216 30.769 0.00 0.00 0.00 2.32
1226 1259 8.259411 TCTATTTGCTGCCATAATTGACATTTT 58.741 29.630 0.00 0.00 0.00 1.82
1227 1260 7.690952 ATTTGCTGCCATAATTGACATTTTT 57.309 28.000 0.00 0.00 0.00 1.94
1248 1281 1.620822 AGCCATTGGAGTGTTTGTCC 58.379 50.000 6.95 0.00 34.31 4.02
1249 1282 0.603065 GCCATTGGAGTGTTTGTCCC 59.397 55.000 6.95 0.00 32.49 4.46
1323 1384 4.606210 TGTGTGTACTAGAAGCTCCCATA 58.394 43.478 0.00 0.00 0.00 2.74
1324 1385 5.020795 TGTGTGTACTAGAAGCTCCCATAA 58.979 41.667 0.00 0.00 0.00 1.90
1413 1474 2.328819 CTTCTGGATGGAAGGCTCTG 57.671 55.000 0.00 0.00 39.05 3.35
1456 1517 3.306502 CCAGCTAGGAAAACTACAACCGA 60.307 47.826 0.00 0.00 41.22 4.69
1511 1572 5.845065 GGAGGACTCCCTACCAGTTATTTAT 59.155 44.000 7.13 0.00 44.53 1.40
1589 1650 2.738643 CGATGCTCATACCGTTTGGAGT 60.739 50.000 0.00 0.00 39.21 3.85
1666 1769 5.423015 GAGTTATTCAGATCAAGGCAGTGA 58.577 41.667 0.00 0.00 0.00 3.41
1675 1778 3.071874 TCAAGGCAGTGATGGGTAAAG 57.928 47.619 0.00 0.00 0.00 1.85
1711 1844 2.025037 TCCCACCCTTCCATGAGAAATG 60.025 50.000 0.00 0.00 32.88 2.32
1822 1961 5.567037 TTCCTCCAAATTCTGTTCTCTCA 57.433 39.130 0.00 0.00 0.00 3.27
1902 2041 6.058183 ACTGCTACAAATCTGAAACTTGAGT 58.942 36.000 4.99 0.00 0.00 3.41
1939 2086 6.689554 ACGGTTAGAAGGCTTATAGCTAATC 58.310 40.000 14.07 10.12 41.99 1.75
2030 2177 8.013947 CACATCACTTGATCAACACTTCTAAAG 58.986 37.037 3.38 0.00 31.21 1.85
2177 2334 0.698238 TAATGTGCCTGGAGCTGGTT 59.302 50.000 0.00 0.00 44.23 3.67
2288 2445 6.390987 CCGATAAATCAGTTAATCGGCTAC 57.609 41.667 9.40 0.00 43.32 3.58
2328 2485 2.128035 CGATTAACTGACCGAGATGCC 58.872 52.381 0.00 0.00 0.00 4.40
2416 2576 6.748333 TTTCCATCTTAATGAGACAAGCTG 57.252 37.500 0.00 0.00 37.17 4.24
2554 2714 3.826524 TGCTGGAACATGTAGGAACAAA 58.173 40.909 0.00 0.00 39.58 2.83
2699 2859 2.540361 GCCGAACTAAATGCAGCTCATG 60.540 50.000 0.00 0.00 35.13 3.07
2700 2860 2.679837 CCGAACTAAATGCAGCTCATGT 59.320 45.455 0.00 0.00 35.13 3.21
2701 2861 3.127548 CCGAACTAAATGCAGCTCATGTT 59.872 43.478 0.00 0.00 35.13 2.71
2702 2862 4.337763 CGAACTAAATGCAGCTCATGTTC 58.662 43.478 0.00 12.60 34.68 3.18
2703 2863 4.142838 CGAACTAAATGCAGCTCATGTTCA 60.143 41.667 17.62 0.95 36.32 3.18
2704 2864 5.448225 CGAACTAAATGCAGCTCATGTTCAT 60.448 40.000 17.62 2.63 36.32 2.57
2705 2865 6.238184 CGAACTAAATGCAGCTCATGTTCATA 60.238 38.462 17.62 4.19 36.32 2.15
2707 2867 5.882000 ACTAAATGCAGCTCATGTTCATACA 59.118 36.000 0.00 0.00 38.95 2.29
2708 2868 5.648178 AAATGCAGCTCATGTTCATACAA 57.352 34.783 0.00 0.00 37.91 2.41
2711 2871 3.819902 TGCAGCTCATGTTCATACAACAA 59.180 39.130 0.00 0.00 37.91 2.83
2712 2872 4.277921 TGCAGCTCATGTTCATACAACAAA 59.722 37.500 0.00 0.00 37.91 2.83
2713 2873 4.618489 GCAGCTCATGTTCATACAACAAAC 59.382 41.667 0.00 0.00 37.91 2.93
2794 2988 4.302455 CGCATGCTCTACAGTTATAGCTT 58.698 43.478 17.13 0.00 35.95 3.74
3056 3251 7.442656 ACTTCTAGTACCAATATGTGCATACC 58.557 38.462 0.00 0.00 0.00 2.73
4069 4264 2.092968 TCGGATAGGTTTGCAGCTTGAT 60.093 45.455 0.00 0.00 31.45 2.57
4093 4288 3.034635 GGCCACTCTGGAAGATCTTCTA 58.965 50.000 29.64 24.59 45.62 2.10
4162 4357 4.100963 TGCGTACATAGGATTCTTGACCAT 59.899 41.667 0.00 0.00 0.00 3.55
4390 4585 2.036475 AGATGATGGACTTTATCGCGCT 59.964 45.455 5.56 0.00 0.00 5.92
4537 4733 7.442666 CCATAACTTAGTTCTTCCTATCCTTGC 59.557 40.741 0.00 0.00 0.00 4.01
4550 4746 4.761739 CCTATCCTTGCAACTTCTTGTCAA 59.238 41.667 0.00 0.00 0.00 3.18
4588 4784 1.357137 TGGTGGATGGCTGTTCTGTA 58.643 50.000 0.00 0.00 0.00 2.74
4600 4796 4.154918 GGCTGTTCTGTATTCAGTTCCAAG 59.845 45.833 0.00 0.00 41.91 3.61
4614 4810 4.274459 CAGTTCCAAGACCTTTTCTCAGTG 59.726 45.833 0.00 0.00 31.02 3.66
4722 4942 3.866651 AGATGGTGCTTACTGCTTACTG 58.133 45.455 0.00 0.00 43.37 2.74
4729 4949 5.107065 GGTGCTTACTGCTTACTGTTTACTG 60.107 44.000 0.00 0.00 43.37 2.74
4730 4950 5.465724 GTGCTTACTGCTTACTGTTTACTGT 59.534 40.000 0.00 0.00 43.37 3.55
4749 4969 5.617252 ACTGTTGTTCCTTTTATCTTCCGA 58.383 37.500 0.00 0.00 0.00 4.55
4751 4971 6.204882 ACTGTTGTTCCTTTTATCTTCCGAAG 59.795 38.462 1.30 1.30 0.00 3.79
4752 4972 5.048991 TGTTGTTCCTTTTATCTTCCGAAGC 60.049 40.000 3.00 0.00 0.00 3.86
4753 4973 4.906618 TGTTCCTTTTATCTTCCGAAGCT 58.093 39.130 3.00 0.00 0.00 3.74
4754 4974 5.313712 TGTTCCTTTTATCTTCCGAAGCTT 58.686 37.500 0.00 0.00 0.00 3.74
4756 4976 7.110155 TGTTCCTTTTATCTTCCGAAGCTTAT 58.890 34.615 0.00 0.00 0.00 1.73
4757 4977 7.280205 TGTTCCTTTTATCTTCCGAAGCTTATC 59.720 37.037 0.00 0.00 0.00 1.75
4758 4978 7.125792 TCCTTTTATCTTCCGAAGCTTATCT 57.874 36.000 0.00 0.00 0.00 1.98
4759 4979 7.210873 TCCTTTTATCTTCCGAAGCTTATCTC 58.789 38.462 0.00 0.00 0.00 2.75
4760 4980 7.070074 TCCTTTTATCTTCCGAAGCTTATCTCT 59.930 37.037 0.00 0.00 0.00 3.10
4761 4981 8.361139 CCTTTTATCTTCCGAAGCTTATCTCTA 58.639 37.037 0.00 0.00 0.00 2.43
4762 4982 9.187455 CTTTTATCTTCCGAAGCTTATCTCTAC 57.813 37.037 0.00 0.00 0.00 2.59
4763 4983 8.466617 TTTATCTTCCGAAGCTTATCTCTACT 57.533 34.615 0.00 0.00 0.00 2.57
4764 4984 6.569179 ATCTTCCGAAGCTTATCTCTACTC 57.431 41.667 0.00 0.00 0.00 2.59
4765 4985 5.686753 TCTTCCGAAGCTTATCTCTACTCT 58.313 41.667 0.00 0.00 0.00 3.24
4766 4986 6.123651 TCTTCCGAAGCTTATCTCTACTCTT 58.876 40.000 0.00 0.00 0.00 2.85
4767 4987 7.281098 TCTTCCGAAGCTTATCTCTACTCTTA 58.719 38.462 0.00 0.00 0.00 2.10
4768 4988 7.940137 TCTTCCGAAGCTTATCTCTACTCTTAT 59.060 37.037 0.00 0.00 0.00 1.73
4769 4989 9.221933 CTTCCGAAGCTTATCTCTACTCTTATA 57.778 37.037 0.00 0.00 0.00 0.98
4770 4990 9.570468 TTCCGAAGCTTATCTCTACTCTTATAA 57.430 33.333 0.00 0.00 0.00 0.98
4771 4991 9.570468 TCCGAAGCTTATCTCTACTCTTATAAA 57.430 33.333 0.00 0.00 0.00 1.40
4792 5012 5.458041 AAAAACAGAGTTGGTGATGATGG 57.542 39.130 0.00 0.00 0.00 3.51
4793 5013 3.795688 AACAGAGTTGGTGATGATGGT 57.204 42.857 0.00 0.00 0.00 3.55
4794 5014 3.063510 ACAGAGTTGGTGATGATGGTG 57.936 47.619 0.00 0.00 0.00 4.17
4795 5015 2.373169 ACAGAGTTGGTGATGATGGTGT 59.627 45.455 0.00 0.00 0.00 4.16
4796 5016 2.745821 CAGAGTTGGTGATGATGGTGTG 59.254 50.000 0.00 0.00 0.00 3.82
4797 5017 1.470098 GAGTTGGTGATGATGGTGTGC 59.530 52.381 0.00 0.00 0.00 4.57
4798 5018 0.527565 GTTGGTGATGATGGTGTGCC 59.472 55.000 0.00 0.00 0.00 5.01
4799 5019 0.405198 TTGGTGATGATGGTGTGCCT 59.595 50.000 0.00 0.00 35.27 4.75
4800 5020 0.322726 TGGTGATGATGGTGTGCCTG 60.323 55.000 0.00 0.00 35.27 4.85
4801 5021 1.660560 GGTGATGATGGTGTGCCTGC 61.661 60.000 0.00 0.00 35.27 4.85
4802 5022 1.378911 TGATGATGGTGTGCCTGCC 60.379 57.895 0.00 0.00 35.27 4.85
4803 5023 1.378911 GATGATGGTGTGCCTGCCA 60.379 57.895 0.00 0.00 39.33 4.92
4806 5026 2.043652 ATGGTGTGCCTGCCATCC 60.044 61.111 0.00 0.00 41.24 3.51
4807 5027 2.619446 ATGGTGTGCCTGCCATCCT 61.619 57.895 0.00 0.00 41.24 3.24
4808 5028 2.753043 GGTGTGCCTGCCATCCTG 60.753 66.667 0.00 0.00 0.00 3.86
4809 5029 3.446570 GTGTGCCTGCCATCCTGC 61.447 66.667 0.00 0.00 0.00 4.85
4810 5030 3.969119 TGTGCCTGCCATCCTGCA 61.969 61.111 0.00 0.00 39.37 4.41
4811 5031 2.677524 GTGCCTGCCATCCTGCAA 60.678 61.111 0.00 0.00 41.51 4.08
4812 5032 2.056223 GTGCCTGCCATCCTGCAAT 61.056 57.895 0.00 0.00 41.51 3.56
4813 5033 0.752743 GTGCCTGCCATCCTGCAATA 60.753 55.000 0.00 0.00 41.51 1.90
4814 5034 0.186630 TGCCTGCCATCCTGCAATAT 59.813 50.000 0.00 0.00 41.51 1.28
4815 5035 1.424684 TGCCTGCCATCCTGCAATATA 59.575 47.619 0.00 0.00 41.51 0.86
4816 5036 2.089980 GCCTGCCATCCTGCAATATAG 58.910 52.381 0.00 0.00 41.51 1.31
4817 5037 2.719739 CCTGCCATCCTGCAATATAGG 58.280 52.381 0.00 0.00 41.51 2.57
4818 5038 2.089980 CTGCCATCCTGCAATATAGGC 58.910 52.381 9.23 9.23 41.51 3.93
4819 5039 1.272092 TGCCATCCTGCAATATAGGCC 60.272 52.381 12.50 0.00 38.56 5.19
4820 5040 1.742761 CCATCCTGCAATATAGGCCG 58.257 55.000 0.00 0.00 35.23 6.13
4821 5041 1.003580 CCATCCTGCAATATAGGCCGT 59.996 52.381 0.00 0.00 35.23 5.68
4822 5042 2.350522 CATCCTGCAATATAGGCCGTC 58.649 52.381 0.00 0.00 35.23 4.79
4823 5043 0.685097 TCCTGCAATATAGGCCGTCC 59.315 55.000 0.00 0.00 35.23 4.79
4824 5044 0.670546 CCTGCAATATAGGCCGTCCG 60.671 60.000 0.00 0.00 37.47 4.79
4825 5045 0.317160 CTGCAATATAGGCCGTCCGA 59.683 55.000 0.00 0.00 37.47 4.55
4826 5046 0.973632 TGCAATATAGGCCGTCCGAT 59.026 50.000 0.00 0.00 37.47 4.18
4827 5047 1.346395 TGCAATATAGGCCGTCCGATT 59.654 47.619 0.00 0.00 37.47 3.34
4828 5048 2.224426 TGCAATATAGGCCGTCCGATTT 60.224 45.455 0.00 0.00 37.47 2.17
4829 5049 3.007074 TGCAATATAGGCCGTCCGATTTA 59.993 43.478 0.00 0.00 37.47 1.40
4830 5050 4.189231 GCAATATAGGCCGTCCGATTTAT 58.811 43.478 0.00 0.00 37.47 1.40
4831 5051 5.105269 TGCAATATAGGCCGTCCGATTTATA 60.105 40.000 0.00 0.00 37.47 0.98
4832 5052 5.989777 GCAATATAGGCCGTCCGATTTATAT 59.010 40.000 0.00 0.00 37.47 0.86
4833 5053 6.482308 GCAATATAGGCCGTCCGATTTATATT 59.518 38.462 0.00 0.47 37.47 1.28
4834 5054 7.012044 GCAATATAGGCCGTCCGATTTATATTT 59.988 37.037 0.00 0.00 37.47 1.40
4835 5055 8.335356 CAATATAGGCCGTCCGATTTATATTTG 58.665 37.037 0.00 0.00 37.47 2.32
4836 5056 4.345859 AGGCCGTCCGATTTATATTTGA 57.654 40.909 0.00 0.00 37.47 2.69
4837 5057 4.062991 AGGCCGTCCGATTTATATTTGAC 58.937 43.478 0.00 0.00 37.47 3.18
4838 5058 3.120786 GGCCGTCCGATTTATATTTGACG 60.121 47.826 0.00 0.00 43.64 4.35
4845 5065 7.470935 TCCGATTTATATTTGACGGATAGGA 57.529 36.000 0.00 0.00 43.30 2.94
4846 5066 7.898918 TCCGATTTATATTTGACGGATAGGAA 58.101 34.615 0.00 0.00 43.30 3.36
4847 5067 8.033038 TCCGATTTATATTTGACGGATAGGAAG 58.967 37.037 0.00 0.00 43.30 3.46
4848 5068 7.277981 CCGATTTATATTTGACGGATAGGAAGG 59.722 40.741 0.00 0.00 42.40 3.46
4849 5069 8.033038 CGATTTATATTTGACGGATAGGAAGGA 58.967 37.037 0.00 0.00 0.00 3.36
4850 5070 9.720769 GATTTATATTTGACGGATAGGAAGGAA 57.279 33.333 0.00 0.00 0.00 3.36
4852 5072 8.897872 TTATATTTGACGGATAGGAAGGAAAC 57.102 34.615 0.00 0.00 0.00 2.78
4854 5074 4.467198 TTGACGGATAGGAAGGAAACTC 57.533 45.455 0.00 0.00 42.68 3.01
4855 5075 3.709587 TGACGGATAGGAAGGAAACTCT 58.290 45.455 0.00 0.00 42.68 3.24
4856 5076 3.447586 TGACGGATAGGAAGGAAACTCTG 59.552 47.826 0.00 0.00 42.68 3.35
4857 5077 3.700038 GACGGATAGGAAGGAAACTCTGA 59.300 47.826 0.00 0.00 42.68 3.27
4858 5078 3.447944 ACGGATAGGAAGGAAACTCTGAC 59.552 47.826 0.00 0.00 42.68 3.51
4859 5079 3.447586 CGGATAGGAAGGAAACTCTGACA 59.552 47.826 0.00 0.00 42.68 3.58
4860 5080 4.081642 CGGATAGGAAGGAAACTCTGACAA 60.082 45.833 0.00 0.00 42.68 3.18
4861 5081 5.395768 CGGATAGGAAGGAAACTCTGACAAT 60.396 44.000 0.00 0.00 42.68 2.71
4862 5082 6.418946 GGATAGGAAGGAAACTCTGACAATT 58.581 40.000 0.00 0.00 42.68 2.32
4863 5083 6.887002 GGATAGGAAGGAAACTCTGACAATTT 59.113 38.462 0.00 0.00 42.68 1.82
4864 5084 7.394641 GGATAGGAAGGAAACTCTGACAATTTT 59.605 37.037 0.00 0.00 42.68 1.82
4865 5085 6.396829 AGGAAGGAAACTCTGACAATTTTG 57.603 37.500 0.00 0.00 42.68 2.44
4866 5086 4.984785 GGAAGGAAACTCTGACAATTTTGC 59.015 41.667 0.00 0.00 42.68 3.68
4867 5087 5.451798 GGAAGGAAACTCTGACAATTTTGCA 60.452 40.000 0.00 0.00 42.68 4.08
4868 5088 5.596836 AGGAAACTCTGACAATTTTGCAA 57.403 34.783 0.00 0.00 32.90 4.08
4869 5089 5.976458 AGGAAACTCTGACAATTTTGCAAA 58.024 33.333 8.05 8.05 32.90 3.68
4870 5090 6.405538 AGGAAACTCTGACAATTTTGCAAAA 58.594 32.000 25.76 25.76 32.90 2.44
4871 5091 6.878389 AGGAAACTCTGACAATTTTGCAAAAA 59.122 30.769 27.10 10.55 32.90 1.94
4872 5092 7.064966 AGGAAACTCTGACAATTTTGCAAAAAG 59.935 33.333 27.10 22.99 32.90 2.27
4873 5093 7.064490 GGAAACTCTGACAATTTTGCAAAAAGA 59.936 33.333 27.10 21.74 0.00 2.52
4874 5094 8.496707 AAACTCTGACAATTTTGCAAAAAGAT 57.503 26.923 27.10 15.38 0.00 2.40
4875 5095 9.598517 AAACTCTGACAATTTTGCAAAAAGATA 57.401 25.926 27.10 15.07 0.00 1.98
4876 5096 8.579682 ACTCTGACAATTTTGCAAAAAGATAC 57.420 30.769 27.10 17.13 0.00 2.24
4877 5097 7.653311 ACTCTGACAATTTTGCAAAAAGATACC 59.347 33.333 27.10 14.67 0.00 2.73
4878 5098 6.928492 TCTGACAATTTTGCAAAAAGATACCC 59.072 34.615 27.10 13.32 0.00 3.69
4879 5099 6.586344 TGACAATTTTGCAAAAAGATACCCA 58.414 32.000 27.10 15.37 0.00 4.51
4880 5100 6.481644 TGACAATTTTGCAAAAAGATACCCAC 59.518 34.615 27.10 12.38 0.00 4.61
4881 5101 6.352516 ACAATTTTGCAAAAAGATACCCACA 58.647 32.000 27.10 1.37 0.00 4.17
4882 5102 6.259829 ACAATTTTGCAAAAAGATACCCACAC 59.740 34.615 27.10 0.00 0.00 3.82
4883 5103 4.329462 TTTGCAAAAAGATACCCACACC 57.671 40.909 10.02 0.00 0.00 4.16
4884 5104 2.243810 TGCAAAAAGATACCCACACCC 58.756 47.619 0.00 0.00 0.00 4.61
4885 5105 1.548719 GCAAAAAGATACCCACACCCC 59.451 52.381 0.00 0.00 0.00 4.95
4886 5106 2.821625 GCAAAAAGATACCCACACCCCT 60.822 50.000 0.00 0.00 0.00 4.79
4887 5107 3.089284 CAAAAAGATACCCACACCCCTC 58.911 50.000 0.00 0.00 0.00 4.30
4888 5108 2.361085 AAAGATACCCACACCCCTCT 57.639 50.000 0.00 0.00 0.00 3.69
4889 5109 1.880941 AAGATACCCACACCCCTCTC 58.119 55.000 0.00 0.00 0.00 3.20
4890 5110 0.031010 AGATACCCACACCCCTCTCC 60.031 60.000 0.00 0.00 0.00 3.71
4891 5111 0.326238 GATACCCACACCCCTCTCCA 60.326 60.000 0.00 0.00 0.00 3.86
4892 5112 0.620700 ATACCCACACCCCTCTCCAC 60.621 60.000 0.00 0.00 0.00 4.02
4893 5113 2.038545 TACCCACACCCCTCTCCACA 62.039 60.000 0.00 0.00 0.00 4.17
4894 5114 1.925455 CCCACACCCCTCTCCACAT 60.925 63.158 0.00 0.00 0.00 3.21
4895 5115 1.500783 CCCACACCCCTCTCCACATT 61.501 60.000 0.00 0.00 0.00 2.71
4896 5116 0.405585 CCACACCCCTCTCCACATTT 59.594 55.000 0.00 0.00 0.00 2.32
4897 5117 1.538047 CACACCCCTCTCCACATTTG 58.462 55.000 0.00 0.00 0.00 2.32
4898 5118 0.251341 ACACCCCTCTCCACATTTGC 60.251 55.000 0.00 0.00 0.00 3.68
4899 5119 0.251297 CACCCCTCTCCACATTTGCA 60.251 55.000 0.00 0.00 0.00 4.08
4900 5120 0.482446 ACCCCTCTCCACATTTGCAA 59.518 50.000 0.00 0.00 0.00 4.08
4901 5121 1.133199 ACCCCTCTCCACATTTGCAAA 60.133 47.619 15.44 15.44 0.00 3.68
4902 5122 2.181975 CCCCTCTCCACATTTGCAAAT 58.818 47.619 18.99 18.99 0.00 2.32
4903 5123 3.245586 ACCCCTCTCCACATTTGCAAATA 60.246 43.478 23.69 8.18 0.00 1.40
4904 5124 3.768757 CCCCTCTCCACATTTGCAAATAA 59.231 43.478 23.69 9.41 0.00 1.40
4905 5125 4.142093 CCCCTCTCCACATTTGCAAATAAG 60.142 45.833 23.69 17.76 0.00 1.73
4906 5126 4.142093 CCCTCTCCACATTTGCAAATAAGG 60.142 45.833 23.69 24.65 0.00 2.69
4907 5127 4.427312 CTCTCCACATTTGCAAATAAGGC 58.573 43.478 23.69 0.00 0.00 4.35
4908 5128 3.195396 TCTCCACATTTGCAAATAAGGCC 59.805 43.478 23.69 0.00 0.00 5.19
4909 5129 3.172339 TCCACATTTGCAAATAAGGCCT 58.828 40.909 23.69 0.00 0.00 5.19
4910 5130 3.582208 TCCACATTTGCAAATAAGGCCTT 59.418 39.130 23.69 24.18 0.00 4.35
4911 5131 3.934579 CCACATTTGCAAATAAGGCCTTC 59.065 43.478 24.49 7.84 0.00 3.46
4912 5132 3.934579 CACATTTGCAAATAAGGCCTTCC 59.065 43.478 24.49 7.15 0.00 3.46
4913 5133 3.055167 ACATTTGCAAATAAGGCCTTCCC 60.055 43.478 24.49 7.52 0.00 3.97
4922 5142 3.987594 AGGCCTTCCCTTGTTCATC 57.012 52.632 0.00 0.00 43.06 2.92
4923 5143 0.332972 AGGCCTTCCCTTGTTCATCC 59.667 55.000 0.00 0.00 43.06 3.51
4924 5144 0.332972 GGCCTTCCCTTGTTCATCCT 59.667 55.000 0.00 0.00 0.00 3.24
4925 5145 1.272704 GGCCTTCCCTTGTTCATCCTT 60.273 52.381 0.00 0.00 0.00 3.36
4926 5146 2.529632 GCCTTCCCTTGTTCATCCTTT 58.470 47.619 0.00 0.00 0.00 3.11
4927 5147 2.899900 GCCTTCCCTTGTTCATCCTTTT 59.100 45.455 0.00 0.00 0.00 2.27
4928 5148 3.056536 GCCTTCCCTTGTTCATCCTTTTC 60.057 47.826 0.00 0.00 0.00 2.29
4929 5149 4.411013 CCTTCCCTTGTTCATCCTTTTCT 58.589 43.478 0.00 0.00 0.00 2.52
4930 5150 4.460731 CCTTCCCTTGTTCATCCTTTTCTC 59.539 45.833 0.00 0.00 0.00 2.87
4931 5151 5.320277 CTTCCCTTGTTCATCCTTTTCTCT 58.680 41.667 0.00 0.00 0.00 3.10
4932 5152 4.911390 TCCCTTGTTCATCCTTTTCTCTC 58.089 43.478 0.00 0.00 0.00 3.20
4933 5153 3.686726 CCCTTGTTCATCCTTTTCTCTCG 59.313 47.826 0.00 0.00 0.00 4.04
4934 5154 3.126000 CCTTGTTCATCCTTTTCTCTCGC 59.874 47.826 0.00 0.00 0.00 5.03
4935 5155 3.401033 TGTTCATCCTTTTCTCTCGCA 57.599 42.857 0.00 0.00 0.00 5.10
4936 5156 3.738982 TGTTCATCCTTTTCTCTCGCAA 58.261 40.909 0.00 0.00 0.00 4.85
4937 5157 3.748048 TGTTCATCCTTTTCTCTCGCAAG 59.252 43.478 0.00 0.00 0.00 4.01
4956 5176 8.942338 TCGCAAGATAAACTACTCATACAAAT 57.058 30.769 0.00 0.00 45.01 2.32
4957 5177 8.817100 TCGCAAGATAAACTACTCATACAAATG 58.183 33.333 0.00 0.00 45.01 2.32
4958 5178 7.584123 CGCAAGATAAACTACTCATACAAATGC 59.416 37.037 0.00 0.00 43.02 3.56
4959 5179 8.397906 GCAAGATAAACTACTCATACAAATGCA 58.602 33.333 0.00 0.00 32.76 3.96
4965 5185 8.565896 AAACTACTCATACAAATGCATCTTGA 57.434 30.769 20.96 10.81 32.76 3.02
4966 5186 8.743085 AACTACTCATACAAATGCATCTTGAT 57.257 30.769 20.96 11.48 32.76 2.57
4967 5187 8.151141 ACTACTCATACAAATGCATCTTGATG 57.849 34.615 20.96 18.39 32.76 3.07
4968 5188 7.772292 ACTACTCATACAAATGCATCTTGATGT 59.228 33.333 20.96 14.21 32.76 3.06
4969 5189 7.400599 ACTCATACAAATGCATCTTGATGTT 57.599 32.000 20.96 1.04 32.76 2.71
4970 5190 7.478322 ACTCATACAAATGCATCTTGATGTTC 58.522 34.615 20.96 0.00 32.76 3.18
4971 5191 6.798482 TCATACAAATGCATCTTGATGTTCC 58.202 36.000 20.96 0.00 32.76 3.62
4972 5192 4.100707 ACAAATGCATCTTGATGTTCCG 57.899 40.909 20.96 1.56 0.00 4.30
4973 5193 3.507233 ACAAATGCATCTTGATGTTCCGT 59.493 39.130 20.96 2.07 0.00 4.69
4974 5194 3.770263 AATGCATCTTGATGTTCCGTG 57.230 42.857 0.00 0.00 0.00 4.94
4975 5195 0.804364 TGCATCTTGATGTTCCGTGC 59.196 50.000 11.61 0.00 0.00 5.34
4976 5196 0.804364 GCATCTTGATGTTCCGTGCA 59.196 50.000 11.61 0.00 0.00 4.57
4977 5197 1.199789 GCATCTTGATGTTCCGTGCAA 59.800 47.619 11.61 0.00 0.00 4.08
4978 5198 2.855180 CATCTTGATGTTCCGTGCAAC 58.145 47.619 0.00 0.00 0.00 4.17
4991 5211 3.737172 GCAACGCACGGGCATCTT 61.737 61.111 11.77 0.00 41.24 2.40
4995 5215 2.511373 CGCACGGGCATCTTGCTA 60.511 61.111 11.77 0.00 44.28 3.49
4996 5216 2.528743 CGCACGGGCATCTTGCTAG 61.529 63.158 11.77 0.00 44.28 3.42
4999 5219 1.742411 GCACGGGCATCTTGCTAGTAA 60.742 52.381 3.77 0.00 44.28 2.24
5042 5262 9.599866 AATAGTATTTGATTTGACATCGACAGA 57.400 29.630 0.00 0.00 0.00 3.41
5064 5284 7.225538 ACAGATAGCTAGTAATGTTTGATGTGC 59.774 37.037 0.00 0.00 0.00 4.57
5089 5313 1.086696 TAAGTTCGCCTTGCTGATGC 58.913 50.000 0.00 0.00 40.20 3.91
5095 5319 0.455633 CGCCTTGCTGATGCTTGTTC 60.456 55.000 0.00 0.00 40.48 3.18
5103 5327 4.695396 TGCTGATGCTTGTTCATGTTTTT 58.305 34.783 0.00 0.00 40.48 1.94
5156 5380 1.066303 CTGTCGGAATCGGAGAAGGAG 59.934 57.143 0.00 0.00 43.58 3.69
5303 5527 3.781770 CTCCATCGCCGAGTGCCTC 62.782 68.421 0.00 0.00 36.24 4.70
5583 5807 3.818787 GCACCGCCAAGGATGCTG 61.819 66.667 0.00 0.00 45.00 4.41
5588 5812 4.453892 GCCAAGGATGCTGCCCCT 62.454 66.667 5.04 5.04 0.00 4.79
5714 5941 1.009829 CCTAGCTCCATCGTTTGTGC 58.990 55.000 0.00 0.00 0.00 4.57
5845 6073 7.283329 AGACCTCATTCTAAGTTTTTGACAGT 58.717 34.615 0.00 0.00 0.00 3.55
5865 6093 3.069158 AGTCACCCTGTATATTACACGCC 59.931 47.826 0.00 0.00 34.46 5.68
5905 6158 4.037446 GTGTCTCTAGGATTGCTAGTCCAG 59.963 50.000 11.44 3.23 38.25 3.86
5927 6180 3.492137 GCTTGTATAACGTGTCCCTAGGG 60.492 52.174 23.22 23.22 0.00 3.53
6010 6263 4.356405 AGATGTGATCGGGATATTTGCA 57.644 40.909 0.00 0.00 0.00 4.08
6016 6277 3.876914 TGATCGGGATATTTGCACACTTC 59.123 43.478 0.00 0.00 0.00 3.01
6017 6278 3.627395 TCGGGATATTTGCACACTTCT 57.373 42.857 0.00 0.00 0.00 2.85
6018 6279 3.950397 TCGGGATATTTGCACACTTCTT 58.050 40.909 0.00 0.00 0.00 2.52
6041 6302 2.264005 TTTTACGAGCAAGGCAGGAA 57.736 45.000 0.00 0.00 0.00 3.36
6162 6424 2.489329 CAAACAGGCCAACACCATCTAG 59.511 50.000 5.01 0.00 0.00 2.43
6164 6426 0.749454 CAGGCCAACACCATCTAGGC 60.749 60.000 5.01 0.00 43.14 3.93
6165 6427 1.207488 AGGCCAACACCATCTAGGCA 61.207 55.000 5.01 0.00 46.96 4.75
6166 6428 0.106519 GGCCAACACCATCTAGGCAT 60.107 55.000 0.00 0.00 46.96 4.40
6167 6429 1.686115 GGCCAACACCATCTAGGCATT 60.686 52.381 0.00 0.00 46.96 3.56
6168 6430 1.678101 GCCAACACCATCTAGGCATTC 59.322 52.381 0.00 0.00 44.59 2.67
6169 6431 2.301346 CCAACACCATCTAGGCATTCC 58.699 52.381 0.00 0.00 43.14 3.01
6171 6433 3.136443 CCAACACCATCTAGGCATTCCTA 59.864 47.826 0.00 0.00 43.91 2.94
6172 6434 4.385199 CCAACACCATCTAGGCATTCCTAA 60.385 45.833 0.00 0.00 44.01 2.69
6173 6435 4.696479 ACACCATCTAGGCATTCCTAAG 57.304 45.455 0.00 0.00 44.01 2.18
6174 6436 4.040755 ACACCATCTAGGCATTCCTAAGT 58.959 43.478 0.00 0.00 44.01 2.24
6175 6437 4.101741 ACACCATCTAGGCATTCCTAAGTC 59.898 45.833 0.00 0.00 44.01 3.01
6176 6438 3.648545 ACCATCTAGGCATTCCTAAGTCC 59.351 47.826 0.00 0.00 44.01 3.85
6177 6439 3.906846 CCATCTAGGCATTCCTAAGTCCT 59.093 47.826 0.00 0.00 44.01 3.85
6178 6440 5.087323 CCATCTAGGCATTCCTAAGTCCTA 58.913 45.833 0.00 0.00 44.01 2.94
6179 6441 5.544176 CCATCTAGGCATTCCTAAGTCCTAA 59.456 44.000 0.00 0.00 44.01 2.69
6180 6442 6.459923 CATCTAGGCATTCCTAAGTCCTAAC 58.540 44.000 0.00 0.00 44.01 2.34
6196 6460 2.516277 CCTAACCCATCCCCAATAACCA 59.484 50.000 0.00 0.00 0.00 3.67
6198 6462 0.261696 ACCCATCCCCAATAACCAGC 59.738 55.000 0.00 0.00 0.00 4.85
6306 6571 1.869754 CGATGCGGTTCTCCCTGTATG 60.870 57.143 0.00 0.00 0.00 2.39
6315 6580 4.024670 GTTCTCCCTGTATGTACTCCACT 58.975 47.826 0.00 0.00 0.00 4.00
6342 6759 3.740128 GATCCACGCCGTCATGCCT 62.740 63.158 0.00 0.00 0.00 4.75
6463 6880 1.064906 CATGGGTGGCAGAGATCACTT 60.065 52.381 0.00 0.00 34.57 3.16
6465 6882 2.481441 TGGGTGGCAGAGATCACTTAT 58.519 47.619 0.00 0.00 34.57 1.73
6466 6883 2.846206 TGGGTGGCAGAGATCACTTATT 59.154 45.455 0.00 0.00 34.57 1.40
6511 6928 4.090588 GGTCGTTCCCCATGGCGA 62.091 66.667 6.09 7.20 0.00 5.54
6625 7042 4.682334 TCCCACTGGCGTCGGGTA 62.682 66.667 0.00 0.00 41.12 3.69
6637 7054 1.679641 TCGGGTATGGTGAGTGCGA 60.680 57.895 0.00 0.00 0.00 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.630769 CGTGCTAAGACCACATAGGACTA 59.369 47.826 0.00 0.00 41.71 2.59
1 2 2.427453 CGTGCTAAGACCACATAGGACT 59.573 50.000 0.00 0.00 44.54 3.85
2 3 2.426024 TCGTGCTAAGACCACATAGGAC 59.574 50.000 0.00 0.00 41.22 3.85
3 4 2.730382 TCGTGCTAAGACCACATAGGA 58.270 47.619 0.00 0.00 41.22 2.94
4 5 3.068165 TCATCGTGCTAAGACCACATAGG 59.932 47.826 0.00 0.00 45.67 2.57
5 6 4.045104 GTCATCGTGCTAAGACCACATAG 58.955 47.826 0.00 0.00 32.85 2.23
6 7 3.699538 AGTCATCGTGCTAAGACCACATA 59.300 43.478 0.00 0.00 32.85 2.29
7 8 2.497675 AGTCATCGTGCTAAGACCACAT 59.502 45.455 0.00 0.00 32.85 3.21
8 9 1.893137 AGTCATCGTGCTAAGACCACA 59.107 47.619 0.00 0.00 32.85 4.17
9 10 2.656560 AGTCATCGTGCTAAGACCAC 57.343 50.000 0.00 0.00 0.00 4.16
10 11 3.585862 GAAAGTCATCGTGCTAAGACCA 58.414 45.455 0.00 0.00 0.00 4.02
11 12 2.599082 CGAAAGTCATCGTGCTAAGACC 59.401 50.000 0.00 0.00 38.01 3.85
12 13 2.599082 CCGAAAGTCATCGTGCTAAGAC 59.401 50.000 0.00 0.00 41.16 3.01
13 14 2.490509 TCCGAAAGTCATCGTGCTAAGA 59.509 45.455 0.00 0.00 41.16 2.10
14 15 2.599082 GTCCGAAAGTCATCGTGCTAAG 59.401 50.000 0.00 0.00 41.16 2.18
15 16 2.230508 AGTCCGAAAGTCATCGTGCTAA 59.769 45.455 0.00 0.00 41.16 3.09
16 17 1.816835 AGTCCGAAAGTCATCGTGCTA 59.183 47.619 0.00 0.00 41.16 3.49
17 18 0.603569 AGTCCGAAAGTCATCGTGCT 59.396 50.000 0.00 0.00 41.16 4.40
18 19 0.716108 CAGTCCGAAAGTCATCGTGC 59.284 55.000 0.00 0.00 41.16 5.34
19 20 1.986378 GACAGTCCGAAAGTCATCGTG 59.014 52.381 0.00 0.00 41.16 4.35
20 21 1.611977 TGACAGTCCGAAAGTCATCGT 59.388 47.619 0.00 0.00 41.16 3.73
21 22 2.347697 TGACAGTCCGAAAGTCATCG 57.652 50.000 0.00 0.00 42.37 3.84
24 25 4.594123 TGTAATGACAGTCCGAAAGTCA 57.406 40.909 0.00 6.62 45.26 3.41
25 26 4.748102 TGTTGTAATGACAGTCCGAAAGTC 59.252 41.667 0.00 0.00 36.76 3.01
26 27 4.699637 TGTTGTAATGACAGTCCGAAAGT 58.300 39.130 0.00 0.00 36.76 2.66
27 28 5.236478 ACTTGTTGTAATGACAGTCCGAAAG 59.764 40.000 0.00 0.00 36.76 2.62
28 29 5.120399 ACTTGTTGTAATGACAGTCCGAAA 58.880 37.500 0.00 0.00 36.76 3.46
29 30 4.699637 ACTTGTTGTAATGACAGTCCGAA 58.300 39.130 0.00 0.00 36.76 4.30
30 31 4.330944 ACTTGTTGTAATGACAGTCCGA 57.669 40.909 0.00 0.00 36.76 4.55
31 32 5.418310 AAACTTGTTGTAATGACAGTCCG 57.582 39.130 0.00 0.00 36.76 4.79
32 33 5.458779 GCAAAACTTGTTGTAATGACAGTCC 59.541 40.000 0.00 0.00 36.76 3.85
33 34 6.265577 AGCAAAACTTGTTGTAATGACAGTC 58.734 36.000 0.00 0.00 36.76 3.51
34 35 6.207691 AGCAAAACTTGTTGTAATGACAGT 57.792 33.333 0.00 0.00 36.76 3.55
58 59 1.982395 ACCTCATTCGTCGGAGCCA 60.982 57.895 0.00 0.00 0.00 4.75
63 64 2.130395 CATCATCACCTCATTCGTCGG 58.870 52.381 0.00 0.00 0.00 4.79
70 71 2.103771 CCGAAGGTCATCATCACCTCAT 59.896 50.000 0.00 0.00 44.03 2.90
71 72 1.482182 CCGAAGGTCATCATCACCTCA 59.518 52.381 0.00 0.00 44.03 3.86
72 73 2.231215 CCGAAGGTCATCATCACCTC 57.769 55.000 0.00 0.00 44.03 3.85
87 97 0.819259 AAGCACTGAAGCAAGCCGAA 60.819 50.000 0.00 0.00 36.85 4.30
92 102 3.740590 CGATTACAAGCACTGAAGCAAG 58.259 45.455 0.00 0.00 36.85 4.01
110 120 1.227764 TAGACGTCCTAGCGGCGAT 60.228 57.895 12.98 7.15 45.96 4.58
114 124 0.883814 ATCCGTAGACGTCCTAGCGG 60.884 60.000 22.93 22.93 40.32 5.52
122 132 2.054232 ACATCCAGATCCGTAGACGT 57.946 50.000 0.85 0.00 37.74 4.34
123 133 3.564644 ACTTACATCCAGATCCGTAGACG 59.435 47.826 0.00 0.00 39.44 4.18
129 139 5.661458 ACAGTAAACTTACATCCAGATCCG 58.339 41.667 2.63 0.00 36.12 4.18
131 141 7.331791 AGGAACAGTAAACTTACATCCAGATC 58.668 38.462 15.55 0.00 36.47 2.75
143 153 6.989659 TCTTCGATACAAGGAACAGTAAACT 58.010 36.000 0.00 0.00 0.00 2.66
144 154 7.544566 TCATCTTCGATACAAGGAACAGTAAAC 59.455 37.037 0.00 0.00 0.00 2.01
151 161 9.482627 AATCTATTCATCTTCGATACAAGGAAC 57.517 33.333 0.00 0.00 0.00 3.62
161 171 6.485830 ACCTTCCAATCTATTCATCTTCGA 57.514 37.500 0.00 0.00 0.00 3.71
162 172 7.517417 CGAAACCTTCCAATCTATTCATCTTCG 60.517 40.741 0.00 0.00 0.00 3.79
163 173 7.281100 ACGAAACCTTCCAATCTATTCATCTTC 59.719 37.037 0.00 0.00 0.00 2.87
164 174 7.112779 ACGAAACCTTCCAATCTATTCATCTT 58.887 34.615 0.00 0.00 0.00 2.40
165 175 6.653989 ACGAAACCTTCCAATCTATTCATCT 58.346 36.000 0.00 0.00 0.00 2.90
196 208 8.512966 TTGGCTGCATTGTAGTATTTGTATTA 57.487 30.769 0.50 0.00 0.00 0.98
205 217 3.081061 CCACTTTGGCTGCATTGTAGTA 58.919 45.455 0.50 0.00 0.00 1.82
206 218 1.888512 CCACTTTGGCTGCATTGTAGT 59.111 47.619 0.50 0.00 0.00 2.73
207 219 2.161855 TCCACTTTGGCTGCATTGTAG 58.838 47.619 0.50 0.00 37.47 2.74
208 220 2.284754 TCCACTTTGGCTGCATTGTA 57.715 45.000 0.50 0.00 37.47 2.41
209 221 1.636148 ATCCACTTTGGCTGCATTGT 58.364 45.000 0.50 0.00 37.47 2.71
213 225 1.250328 CAGAATCCACTTTGGCTGCA 58.750 50.000 0.50 0.00 37.47 4.41
214 226 0.529378 CCAGAATCCACTTTGGCTGC 59.471 55.000 0.00 0.00 37.47 5.25
215 227 1.180029 CCCAGAATCCACTTTGGCTG 58.820 55.000 0.00 0.00 37.47 4.85
280 295 1.305887 GGAAAGGAGACGGGGAGGA 60.306 63.158 0.00 0.00 0.00 3.71
557 578 1.153429 GAAGGAATGGACCGTCCCG 60.153 63.158 15.24 0.00 35.03 5.14
558 579 1.153429 CGAAGGAATGGACCGTCCC 60.153 63.158 15.24 0.00 35.03 4.46
559 580 0.036671 AACGAAGGAATGGACCGTCC 60.037 55.000 10.96 10.96 35.58 4.79
560 581 1.076332 CAACGAAGGAATGGACCGTC 58.924 55.000 0.00 0.00 35.64 4.79
567 588 1.067142 TCCCGACTCAACGAAGGAATG 60.067 52.381 0.00 0.00 35.09 2.67
598 619 3.741388 CGCCGAATTACTCCTGGATTCTT 60.741 47.826 0.00 0.00 0.00 2.52
676 697 4.500116 GGCGACCTCTGGAGACGC 62.500 72.222 22.35 22.35 45.32 5.19
785 807 0.743345 CCAAAATCCCCCGAGACGTC 60.743 60.000 7.70 7.70 0.00 4.34
809 831 0.238289 CGCACGCAAAACCTCAATCT 59.762 50.000 0.00 0.00 0.00 2.40
830 852 1.151450 ACTTTCCCCACACAGGCAG 59.849 57.895 0.00 0.00 35.39 4.85
871 893 1.952621 ATCCTCGAGAAACCAAGGGA 58.047 50.000 15.71 0.00 0.00 4.20
1224 1257 5.452636 GGACAAACACTCCAATGGCTAAAAA 60.453 40.000 0.00 0.00 0.00 1.94
1225 1258 4.038642 GGACAAACACTCCAATGGCTAAAA 59.961 41.667 0.00 0.00 0.00 1.52
1226 1259 3.572255 GGACAAACACTCCAATGGCTAAA 59.428 43.478 0.00 0.00 0.00 1.85
1227 1260 3.153919 GGACAAACACTCCAATGGCTAA 58.846 45.455 0.00 0.00 0.00 3.09
1231 1264 1.888512 CAGGGACAAACACTCCAATGG 59.111 52.381 0.00 0.00 0.00 3.16
1248 1281 3.441572 CCTGAAAGAAGTAATGGCACAGG 59.558 47.826 0.00 0.00 38.10 4.00
1249 1282 4.326826 TCCTGAAAGAAGTAATGGCACAG 58.673 43.478 0.00 0.00 38.10 3.66
1323 1384 1.008693 AGGTTGGGCCATGGATGATTT 59.991 47.619 18.40 0.00 40.61 2.17
1324 1385 0.638292 AGGTTGGGCCATGGATGATT 59.362 50.000 18.40 0.00 40.61 2.57
1413 1474 1.672881 CCTGGGCTCGATGTTTTGATC 59.327 52.381 0.00 0.00 0.00 2.92
1456 1517 6.312672 AGTTGCGTCAGCTTAAAAACAAAAAT 59.687 30.769 0.00 0.00 45.42 1.82
1511 1572 9.547753 GATATTGATTAACAGGCTGTCTTTAGA 57.452 33.333 22.31 6.86 0.00 2.10
1547 1608 3.945179 GAATGCATCGAAATGACAGTCC 58.055 45.455 0.00 0.00 34.61 3.85
1589 1650 6.434028 CCATTTTTCCAGGAACAGATGAAGTA 59.566 38.462 15.58 0.00 0.00 2.24
1651 1754 1.064906 ACCCATCACTGCCTTGATCTG 60.065 52.381 0.00 0.00 33.74 2.90
1666 1769 7.454694 GGAATAAATGCTAATCCCTTTACCCAT 59.545 37.037 0.00 0.00 0.00 4.00
1694 1827 4.082125 GACAACATTTCTCATGGAAGGGT 58.918 43.478 0.00 0.00 35.16 4.34
1711 1844 2.618709 CCCAAAAGTCAGGTGAGACAAC 59.381 50.000 0.00 0.00 40.98 3.32
1719 1852 2.115266 CGGGCCCAAAAGTCAGGT 59.885 61.111 24.92 0.00 0.00 4.00
1822 1961 0.462581 ATGCTCGGCGTGATTGTGAT 60.463 50.000 13.77 0.00 0.00 3.06
1939 2086 6.549364 AGGATACAAGAGACCACATAAGAGAG 59.451 42.308 0.00 0.00 41.41 3.20
2090 2245 5.822519 TGCACTAAAATATCCATGGTCAGAC 59.177 40.000 12.58 0.00 0.00 3.51
2177 2334 6.348498 ACCGATATCTTGAACATTGATCACA 58.652 36.000 0.00 0.00 0.00 3.58
2220 2377 0.472925 TTGTCCCTACTCAGCACCCA 60.473 55.000 0.00 0.00 0.00 4.51
2416 2576 3.281727 TCAACATCTTACATCAGCCCC 57.718 47.619 0.00 0.00 0.00 5.80
2577 2737 5.235534 ACCCTCCATGTCTATCCCTATTTT 58.764 41.667 0.00 0.00 0.00 1.82
2711 2871 8.850156 GCCAAACCACATGAGATAATATTAGTT 58.150 33.333 0.00 0.00 0.00 2.24
2712 2872 8.220559 AGCCAAACCACATGAGATAATATTAGT 58.779 33.333 0.00 0.00 0.00 2.24
2713 2873 8.509690 CAGCCAAACCACATGAGATAATATTAG 58.490 37.037 0.00 0.00 0.00 1.73
2858 3052 6.701841 CCAGTAGTGCAATACCTACATAACAG 59.298 42.308 19.96 0.00 0.00 3.16
2957 3151 5.865085 ACACATGAAAGCCTTAGTGAACTA 58.135 37.500 0.00 0.00 0.00 2.24
3134 3329 7.027874 ACAAGGTAATTTACTTCATCCTCCA 57.972 36.000 6.52 0.00 0.00 3.86
4069 4264 3.121929 AGATCTTCCAGAGTGGCCTTA 57.878 47.619 3.32 0.00 37.47 2.69
4390 4585 7.039011 AGTGTTACCTTCAGATAGATGTCAACA 60.039 37.037 0.00 0.00 0.00 3.33
4561 4757 2.042162 ACAGCCATCCACCAATCTTTCT 59.958 45.455 0.00 0.00 0.00 2.52
4562 4758 2.450476 ACAGCCATCCACCAATCTTTC 58.550 47.619 0.00 0.00 0.00 2.62
4565 4761 1.637553 AGAACAGCCATCCACCAATCT 59.362 47.619 0.00 0.00 0.00 2.40
4577 4773 3.674997 TGGAACTGAATACAGAACAGCC 58.325 45.455 0.00 0.00 46.03 4.85
4588 4784 5.694995 TGAGAAAAGGTCTTGGAACTGAAT 58.305 37.500 0.00 0.00 36.41 2.57
4614 4810 9.250624 CAAACCTATGCTGTACTATCTAGTTTC 57.749 37.037 0.00 0.00 37.73 2.78
4722 4942 7.801783 CGGAAGATAAAAGGAACAACAGTAAAC 59.198 37.037 0.00 0.00 0.00 2.01
4729 4949 5.181433 AGCTTCGGAAGATAAAAGGAACAAC 59.819 40.000 21.45 0.00 41.60 3.32
4730 4950 5.313712 AGCTTCGGAAGATAAAAGGAACAA 58.686 37.500 21.45 0.00 41.60 2.83
4770 4990 4.895297 ACCATCATCACCAACTCTGTTTTT 59.105 37.500 0.00 0.00 0.00 1.94
4771 4991 4.279169 CACCATCATCACCAACTCTGTTTT 59.721 41.667 0.00 0.00 0.00 2.43
4772 4992 3.822735 CACCATCATCACCAACTCTGTTT 59.177 43.478 0.00 0.00 0.00 2.83
4773 4993 3.181440 ACACCATCATCACCAACTCTGTT 60.181 43.478 0.00 0.00 0.00 3.16
4774 4994 2.373169 ACACCATCATCACCAACTCTGT 59.627 45.455 0.00 0.00 0.00 3.41
4775 4995 2.745821 CACACCATCATCACCAACTCTG 59.254 50.000 0.00 0.00 0.00 3.35
4776 4996 2.877300 GCACACCATCATCACCAACTCT 60.877 50.000 0.00 0.00 0.00 3.24
4777 4997 1.470098 GCACACCATCATCACCAACTC 59.530 52.381 0.00 0.00 0.00 3.01
4778 4998 1.538047 GCACACCATCATCACCAACT 58.462 50.000 0.00 0.00 0.00 3.16
4779 4999 0.527565 GGCACACCATCATCACCAAC 59.472 55.000 0.00 0.00 35.26 3.77
4780 5000 0.405198 AGGCACACCATCATCACCAA 59.595 50.000 0.00 0.00 39.06 3.67
4781 5001 0.322726 CAGGCACACCATCATCACCA 60.323 55.000 0.00 0.00 39.06 4.17
4782 5002 1.660560 GCAGGCACACCATCATCACC 61.661 60.000 0.00 0.00 39.06 4.02
4783 5003 1.660560 GGCAGGCACACCATCATCAC 61.661 60.000 0.00 0.00 39.06 3.06
4784 5004 1.378911 GGCAGGCACACCATCATCA 60.379 57.895 0.00 0.00 39.06 3.07
4785 5005 0.754217 ATGGCAGGCACACCATCATC 60.754 55.000 0.00 0.00 42.69 2.92
4786 5006 1.308666 ATGGCAGGCACACCATCAT 59.691 52.632 0.00 0.00 42.69 2.45
4787 5007 2.765279 ATGGCAGGCACACCATCA 59.235 55.556 0.00 0.00 42.69 3.07
4790 5010 3.259314 AGGATGGCAGGCACACCA 61.259 61.111 19.51 0.00 41.01 4.17
4791 5011 2.753043 CAGGATGGCAGGCACACC 60.753 66.667 12.37 12.37 0.00 4.16
4792 5012 3.446570 GCAGGATGGCAGGCACAC 61.447 66.667 0.00 0.00 35.86 3.82
4793 5013 2.791613 ATTGCAGGATGGCAGGCACA 62.792 55.000 0.00 0.00 45.88 4.57
4794 5014 0.752743 TATTGCAGGATGGCAGGCAC 60.753 55.000 0.00 0.00 45.88 5.01
4795 5015 0.186630 ATATTGCAGGATGGCAGGCA 59.813 50.000 0.00 0.00 45.88 4.75
4796 5016 2.089980 CTATATTGCAGGATGGCAGGC 58.910 52.381 0.00 0.00 45.88 4.85
4797 5017 2.719739 CCTATATTGCAGGATGGCAGG 58.280 52.381 0.00 0.00 45.88 4.85
4798 5018 2.089980 GCCTATATTGCAGGATGGCAG 58.910 52.381 12.68 0.00 45.88 4.85
4799 5019 1.272092 GGCCTATATTGCAGGATGGCA 60.272 52.381 17.22 0.00 43.19 4.92
4800 5020 1.467920 GGCCTATATTGCAGGATGGC 58.532 55.000 0.00 10.13 34.91 4.40
4801 5021 1.003580 ACGGCCTATATTGCAGGATGG 59.996 52.381 0.00 0.00 34.91 3.51
4802 5022 2.350522 GACGGCCTATATTGCAGGATG 58.649 52.381 0.00 0.00 34.91 3.51
4803 5023 1.279271 GGACGGCCTATATTGCAGGAT 59.721 52.381 0.00 0.00 34.91 3.24
4804 5024 0.685097 GGACGGCCTATATTGCAGGA 59.315 55.000 0.00 0.00 34.91 3.86
4805 5025 0.670546 CGGACGGCCTATATTGCAGG 60.671 60.000 5.33 0.00 36.16 4.85
4806 5026 0.317160 TCGGACGGCCTATATTGCAG 59.683 55.000 5.33 0.00 0.00 4.41
4807 5027 0.973632 ATCGGACGGCCTATATTGCA 59.026 50.000 5.33 0.00 0.00 4.08
4808 5028 2.094762 AATCGGACGGCCTATATTGC 57.905 50.000 5.33 0.00 0.00 3.56
4809 5029 8.335356 CAAATATAAATCGGACGGCCTATATTG 58.665 37.037 16.36 9.54 0.00 1.90
4810 5030 8.262227 TCAAATATAAATCGGACGGCCTATATT 58.738 33.333 5.33 9.66 0.00 1.28
4811 5031 7.709613 GTCAAATATAAATCGGACGGCCTATAT 59.290 37.037 5.33 3.09 0.00 0.86
4812 5032 7.037438 GTCAAATATAAATCGGACGGCCTATA 58.963 38.462 5.33 0.25 0.00 1.31
4813 5033 5.873164 GTCAAATATAAATCGGACGGCCTAT 59.127 40.000 5.33 0.00 0.00 2.57
4814 5034 5.232463 GTCAAATATAAATCGGACGGCCTA 58.768 41.667 5.33 0.00 0.00 3.93
4815 5035 4.062991 GTCAAATATAAATCGGACGGCCT 58.937 43.478 5.33 0.00 0.00 5.19
4816 5036 3.120786 CGTCAAATATAAATCGGACGGCC 60.121 47.826 0.00 0.00 42.97 6.13
4817 5037 4.048820 CGTCAAATATAAATCGGACGGC 57.951 45.455 0.00 0.00 42.97 5.68
4822 5042 7.277981 CCTTCCTATCCGTCAAATATAAATCGG 59.722 40.741 0.00 0.00 39.40 4.18
4823 5043 8.033038 TCCTTCCTATCCGTCAAATATAAATCG 58.967 37.037 0.00 0.00 0.00 3.34
4824 5044 9.720769 TTCCTTCCTATCCGTCAAATATAAATC 57.279 33.333 0.00 0.00 0.00 2.17
4826 5046 9.333724 GTTTCCTTCCTATCCGTCAAATATAAA 57.666 33.333 0.00 0.00 0.00 1.40
4827 5047 8.711170 AGTTTCCTTCCTATCCGTCAAATATAA 58.289 33.333 0.00 0.00 0.00 0.98
4828 5048 8.258850 AGTTTCCTTCCTATCCGTCAAATATA 57.741 34.615 0.00 0.00 0.00 0.86
4829 5049 7.071321 AGAGTTTCCTTCCTATCCGTCAAATAT 59.929 37.037 0.00 0.00 0.00 1.28
4830 5050 6.383147 AGAGTTTCCTTCCTATCCGTCAAATA 59.617 38.462 0.00 0.00 0.00 1.40
4831 5051 5.189934 AGAGTTTCCTTCCTATCCGTCAAAT 59.810 40.000 0.00 0.00 0.00 2.32
4832 5052 4.530946 AGAGTTTCCTTCCTATCCGTCAAA 59.469 41.667 0.00 0.00 0.00 2.69
4833 5053 4.081642 CAGAGTTTCCTTCCTATCCGTCAA 60.082 45.833 0.00 0.00 0.00 3.18
4834 5054 3.447586 CAGAGTTTCCTTCCTATCCGTCA 59.552 47.826 0.00 0.00 0.00 4.35
4835 5055 3.700038 TCAGAGTTTCCTTCCTATCCGTC 59.300 47.826 0.00 0.00 0.00 4.79
4836 5056 3.447944 GTCAGAGTTTCCTTCCTATCCGT 59.552 47.826 0.00 0.00 0.00 4.69
4837 5057 3.447586 TGTCAGAGTTTCCTTCCTATCCG 59.552 47.826 0.00 0.00 0.00 4.18
4838 5058 5.422214 TTGTCAGAGTTTCCTTCCTATCC 57.578 43.478 0.00 0.00 0.00 2.59
4839 5059 7.929941 AAATTGTCAGAGTTTCCTTCCTATC 57.070 36.000 0.00 0.00 0.00 2.08
4840 5060 7.309438 GCAAAATTGTCAGAGTTTCCTTCCTAT 60.309 37.037 0.00 0.00 0.00 2.57
4841 5061 6.016276 GCAAAATTGTCAGAGTTTCCTTCCTA 60.016 38.462 0.00 0.00 0.00 2.94
4842 5062 5.221322 GCAAAATTGTCAGAGTTTCCTTCCT 60.221 40.000 0.00 0.00 0.00 3.36
4843 5063 4.984785 GCAAAATTGTCAGAGTTTCCTTCC 59.015 41.667 0.00 0.00 0.00 3.46
4844 5064 5.591099 TGCAAAATTGTCAGAGTTTCCTTC 58.409 37.500 0.00 0.00 0.00 3.46
4845 5065 5.596836 TGCAAAATTGTCAGAGTTTCCTT 57.403 34.783 0.00 0.00 0.00 3.36
4846 5066 5.596836 TTGCAAAATTGTCAGAGTTTCCT 57.403 34.783 0.00 0.00 0.00 3.36
4847 5067 6.660887 TTTTGCAAAATTGTCAGAGTTTCC 57.339 33.333 20.46 0.00 0.00 3.13
4848 5068 7.962917 TCTTTTTGCAAAATTGTCAGAGTTTC 58.037 30.769 24.39 0.00 0.00 2.78
4849 5069 7.903995 TCTTTTTGCAAAATTGTCAGAGTTT 57.096 28.000 24.39 0.00 0.00 2.66
4850 5070 9.034544 GTATCTTTTTGCAAAATTGTCAGAGTT 57.965 29.630 24.39 13.81 0.00 3.01
4851 5071 7.653311 GGTATCTTTTTGCAAAATTGTCAGAGT 59.347 33.333 24.39 14.59 0.00 3.24
4852 5072 7.116805 GGGTATCTTTTTGCAAAATTGTCAGAG 59.883 37.037 24.39 16.41 0.00 3.35
4853 5073 6.928492 GGGTATCTTTTTGCAAAATTGTCAGA 59.072 34.615 24.39 21.88 0.00 3.27
4854 5074 6.705381 TGGGTATCTTTTTGCAAAATTGTCAG 59.295 34.615 24.39 17.73 0.00 3.51
4855 5075 6.481644 GTGGGTATCTTTTTGCAAAATTGTCA 59.518 34.615 24.39 13.45 0.00 3.58
4856 5076 6.481644 TGTGGGTATCTTTTTGCAAAATTGTC 59.518 34.615 24.39 13.66 0.00 3.18
4857 5077 6.259829 GTGTGGGTATCTTTTTGCAAAATTGT 59.740 34.615 24.39 14.99 0.00 2.71
4858 5078 6.293353 GGTGTGGGTATCTTTTTGCAAAATTG 60.293 38.462 24.39 19.07 0.00 2.32
4859 5079 5.762711 GGTGTGGGTATCTTTTTGCAAAATT 59.237 36.000 24.39 14.72 0.00 1.82
4860 5080 5.304778 GGTGTGGGTATCTTTTTGCAAAAT 58.695 37.500 24.39 12.94 0.00 1.82
4861 5081 4.443598 GGGTGTGGGTATCTTTTTGCAAAA 60.444 41.667 20.46 20.46 0.00 2.44
4862 5082 3.070302 GGGTGTGGGTATCTTTTTGCAAA 59.930 43.478 8.05 8.05 0.00 3.68
4863 5083 2.630580 GGGTGTGGGTATCTTTTTGCAA 59.369 45.455 0.00 0.00 0.00 4.08
4864 5084 2.243810 GGGTGTGGGTATCTTTTTGCA 58.756 47.619 0.00 0.00 0.00 4.08
4865 5085 1.548719 GGGGTGTGGGTATCTTTTTGC 59.451 52.381 0.00 0.00 0.00 3.68
4866 5086 3.089284 GAGGGGTGTGGGTATCTTTTTG 58.911 50.000 0.00 0.00 0.00 2.44
4867 5087 2.993863 AGAGGGGTGTGGGTATCTTTTT 59.006 45.455 0.00 0.00 0.00 1.94
4868 5088 2.576648 GAGAGGGGTGTGGGTATCTTTT 59.423 50.000 0.00 0.00 0.00 2.27
4869 5089 2.197465 GAGAGGGGTGTGGGTATCTTT 58.803 52.381 0.00 0.00 0.00 2.52
4870 5090 1.625508 GGAGAGGGGTGTGGGTATCTT 60.626 57.143 0.00 0.00 0.00 2.40
4871 5091 0.031010 GGAGAGGGGTGTGGGTATCT 60.031 60.000 0.00 0.00 0.00 1.98
4872 5092 0.326238 TGGAGAGGGGTGTGGGTATC 60.326 60.000 0.00 0.00 0.00 2.24
4873 5093 0.620700 GTGGAGAGGGGTGTGGGTAT 60.621 60.000 0.00 0.00 0.00 2.73
4874 5094 1.229400 GTGGAGAGGGGTGTGGGTA 60.229 63.158 0.00 0.00 0.00 3.69
4875 5095 2.529389 GTGGAGAGGGGTGTGGGT 60.529 66.667 0.00 0.00 0.00 4.51
4876 5096 1.500783 AATGTGGAGAGGGGTGTGGG 61.501 60.000 0.00 0.00 0.00 4.61
4877 5097 0.405585 AAATGTGGAGAGGGGTGTGG 59.594 55.000 0.00 0.00 0.00 4.17
4878 5098 1.538047 CAAATGTGGAGAGGGGTGTG 58.462 55.000 0.00 0.00 0.00 3.82
4879 5099 0.251341 GCAAATGTGGAGAGGGGTGT 60.251 55.000 0.00 0.00 0.00 4.16
4880 5100 0.251297 TGCAAATGTGGAGAGGGGTG 60.251 55.000 0.00 0.00 0.00 4.61
4881 5101 0.482446 TTGCAAATGTGGAGAGGGGT 59.518 50.000 0.00 0.00 0.00 4.95
4882 5102 1.631405 TTTGCAAATGTGGAGAGGGG 58.369 50.000 8.05 0.00 0.00 4.79
4883 5103 4.142093 CCTTATTTGCAAATGTGGAGAGGG 60.142 45.833 30.43 17.11 0.00 4.30
4884 5104 4.678840 GCCTTATTTGCAAATGTGGAGAGG 60.679 45.833 31.67 25.73 0.00 3.69
4885 5105 4.427312 GCCTTATTTGCAAATGTGGAGAG 58.573 43.478 31.67 20.39 0.00 3.20
4886 5106 3.195396 GGCCTTATTTGCAAATGTGGAGA 59.805 43.478 31.67 14.88 0.00 3.71
4887 5107 3.196254 AGGCCTTATTTGCAAATGTGGAG 59.804 43.478 31.67 23.26 0.00 3.86
4888 5108 3.172339 AGGCCTTATTTGCAAATGTGGA 58.828 40.909 31.67 15.77 0.00 4.02
4889 5109 3.615224 AGGCCTTATTTGCAAATGTGG 57.385 42.857 30.43 28.46 0.00 4.17
4890 5110 3.934579 GGAAGGCCTTATTTGCAAATGTG 59.065 43.478 30.43 21.90 0.00 3.21
4891 5111 3.055167 GGGAAGGCCTTATTTGCAAATGT 60.055 43.478 30.43 12.33 0.00 2.71
4892 5112 3.198417 AGGGAAGGCCTTATTTGCAAATG 59.802 43.478 30.43 17.22 0.00 2.32
4893 5113 3.453868 AGGGAAGGCCTTATTTGCAAAT 58.546 40.909 26.72 26.72 0.00 2.32
4894 5114 2.901291 AGGGAAGGCCTTATTTGCAAA 58.099 42.857 20.54 15.44 0.00 3.68
4895 5115 2.566724 CAAGGGAAGGCCTTATTTGCAA 59.433 45.455 20.54 0.00 0.00 4.08
4896 5116 2.178580 CAAGGGAAGGCCTTATTTGCA 58.821 47.619 20.54 0.00 0.00 4.08
4897 5117 2.179427 ACAAGGGAAGGCCTTATTTGC 58.821 47.619 20.54 5.12 0.00 3.68
4898 5118 3.831911 TGAACAAGGGAAGGCCTTATTTG 59.168 43.478 20.54 22.82 0.00 2.32
4899 5119 4.126520 TGAACAAGGGAAGGCCTTATTT 57.873 40.909 20.54 10.34 0.00 1.40
4900 5120 3.825908 TGAACAAGGGAAGGCCTTATT 57.174 42.857 20.54 11.12 0.00 1.40
4901 5121 3.373110 GGATGAACAAGGGAAGGCCTTAT 60.373 47.826 20.54 4.41 0.00 1.73
4902 5122 2.025321 GGATGAACAAGGGAAGGCCTTA 60.025 50.000 20.54 0.00 0.00 2.69
4903 5123 1.272704 GGATGAACAAGGGAAGGCCTT 60.273 52.381 20.65 20.65 0.00 4.35
4904 5124 0.332972 GGATGAACAAGGGAAGGCCT 59.667 55.000 0.00 0.00 0.00 5.19
4905 5125 0.332972 AGGATGAACAAGGGAAGGCC 59.667 55.000 0.00 0.00 0.00 5.19
4906 5126 2.222227 AAGGATGAACAAGGGAAGGC 57.778 50.000 0.00 0.00 0.00 4.35
4907 5127 4.411013 AGAAAAGGATGAACAAGGGAAGG 58.589 43.478 0.00 0.00 0.00 3.46
4908 5128 5.320277 AGAGAAAAGGATGAACAAGGGAAG 58.680 41.667 0.00 0.00 0.00 3.46
4909 5129 5.316987 GAGAGAAAAGGATGAACAAGGGAA 58.683 41.667 0.00 0.00 0.00 3.97
4910 5130 4.563580 CGAGAGAAAAGGATGAACAAGGGA 60.564 45.833 0.00 0.00 0.00 4.20
4911 5131 3.686726 CGAGAGAAAAGGATGAACAAGGG 59.313 47.826 0.00 0.00 0.00 3.95
4912 5132 3.126000 GCGAGAGAAAAGGATGAACAAGG 59.874 47.826 0.00 0.00 0.00 3.61
4913 5133 3.748048 TGCGAGAGAAAAGGATGAACAAG 59.252 43.478 0.00 0.00 0.00 3.16
4914 5134 3.738982 TGCGAGAGAAAAGGATGAACAA 58.261 40.909 0.00 0.00 0.00 2.83
4915 5135 3.401033 TGCGAGAGAAAAGGATGAACA 57.599 42.857 0.00 0.00 0.00 3.18
4916 5136 3.997021 TCTTGCGAGAGAAAAGGATGAAC 59.003 43.478 0.00 0.00 0.00 3.18
4917 5137 4.271696 TCTTGCGAGAGAAAAGGATGAA 57.728 40.909 0.00 0.00 0.00 2.57
4918 5138 3.961480 TCTTGCGAGAGAAAAGGATGA 57.039 42.857 0.00 0.00 0.00 2.92
4919 5139 6.314896 AGTTTATCTTGCGAGAGAAAAGGATG 59.685 38.462 22.26 0.00 42.76 3.51
4920 5140 6.410540 AGTTTATCTTGCGAGAGAAAAGGAT 58.589 36.000 22.26 8.79 42.76 3.24
4921 5141 5.794894 AGTTTATCTTGCGAGAGAAAAGGA 58.205 37.500 22.26 1.21 42.76 3.36
4922 5142 6.814146 AGTAGTTTATCTTGCGAGAGAAAAGG 59.186 38.462 22.26 0.00 42.76 3.11
4923 5143 7.542477 TGAGTAGTTTATCTTGCGAGAGAAAAG 59.458 37.037 22.26 0.00 42.76 2.27
4924 5144 7.375834 TGAGTAGTTTATCTTGCGAGAGAAAA 58.624 34.615 22.26 15.38 42.76 2.29
4925 5145 6.920817 TGAGTAGTTTATCTTGCGAGAGAAA 58.079 36.000 17.88 17.88 39.93 2.52
4926 5146 6.510879 TGAGTAGTTTATCTTGCGAGAGAA 57.489 37.500 10.06 8.47 34.85 2.87
4927 5147 6.701145 ATGAGTAGTTTATCTTGCGAGAGA 57.299 37.500 10.06 1.18 34.85 3.10
4928 5148 7.418408 TGTATGAGTAGTTTATCTTGCGAGAG 58.582 38.462 10.06 0.00 34.85 3.20
4929 5149 7.329588 TGTATGAGTAGTTTATCTTGCGAGA 57.670 36.000 6.01 6.01 36.09 4.04
4930 5150 7.987268 TTGTATGAGTAGTTTATCTTGCGAG 57.013 36.000 0.00 0.00 0.00 5.03
4931 5151 8.817100 CATTTGTATGAGTAGTTTATCTTGCGA 58.183 33.333 0.00 0.00 33.37 5.10
4932 5152 7.584123 GCATTTGTATGAGTAGTTTATCTTGCG 59.416 37.037 0.00 0.00 33.37 4.85
4933 5153 8.397906 TGCATTTGTATGAGTAGTTTATCTTGC 58.602 33.333 0.00 0.00 33.37 4.01
4939 5159 9.665719 TCAAGATGCATTTGTATGAGTAGTTTA 57.334 29.630 0.00 0.00 33.37 2.01
4940 5160 8.565896 TCAAGATGCATTTGTATGAGTAGTTT 57.434 30.769 0.00 0.00 33.37 2.66
4941 5161 8.618677 CATCAAGATGCATTTGTATGAGTAGTT 58.381 33.333 0.00 0.00 33.37 2.24
4942 5162 7.772292 ACATCAAGATGCATTTGTATGAGTAGT 59.228 33.333 22.17 13.08 42.39 2.73
4943 5163 8.151141 ACATCAAGATGCATTTGTATGAGTAG 57.849 34.615 22.17 12.72 42.39 2.57
4944 5164 8.510243 AACATCAAGATGCATTTGTATGAGTA 57.490 30.769 22.17 8.59 42.39 2.59
4945 5165 7.400599 AACATCAAGATGCATTTGTATGAGT 57.599 32.000 22.17 12.92 42.39 3.41
4946 5166 6.916387 GGAACATCAAGATGCATTTGTATGAG 59.084 38.462 22.17 12.56 42.39 2.90
4947 5167 6.458615 CGGAACATCAAGATGCATTTGTATGA 60.459 38.462 22.17 15.31 42.39 2.15
4948 5168 5.684184 CGGAACATCAAGATGCATTTGTATG 59.316 40.000 9.85 13.57 42.39 2.39
4949 5169 5.357878 ACGGAACATCAAGATGCATTTGTAT 59.642 36.000 9.85 1.80 42.39 2.29
4950 5170 4.699735 ACGGAACATCAAGATGCATTTGTA 59.300 37.500 9.85 0.00 42.39 2.41
4951 5171 3.507233 ACGGAACATCAAGATGCATTTGT 59.493 39.130 9.85 0.00 42.39 2.83
4952 5172 3.855379 CACGGAACATCAAGATGCATTTG 59.145 43.478 9.85 7.88 42.39 2.32
4953 5173 3.674138 GCACGGAACATCAAGATGCATTT 60.674 43.478 9.85 0.00 42.39 2.32
4954 5174 2.159338 GCACGGAACATCAAGATGCATT 60.159 45.455 9.85 0.00 42.39 3.56
4955 5175 1.402968 GCACGGAACATCAAGATGCAT 59.597 47.619 9.85 0.00 42.39 3.96
4956 5176 0.804364 GCACGGAACATCAAGATGCA 59.196 50.000 9.85 0.00 42.39 3.96
4957 5177 0.804364 TGCACGGAACATCAAGATGC 59.196 50.000 9.85 0.00 42.39 3.91
4958 5178 2.725759 CGTTGCACGGAACATCAAGATG 60.726 50.000 8.45 8.45 40.19 2.90
4959 5179 1.464608 CGTTGCACGGAACATCAAGAT 59.535 47.619 2.31 0.00 38.08 2.40
4960 5180 0.865111 CGTTGCACGGAACATCAAGA 59.135 50.000 2.31 0.00 38.08 3.02
4961 5181 0.725784 GCGTTGCACGGAACATCAAG 60.726 55.000 10.02 0.00 42.82 3.02
4962 5182 1.281353 GCGTTGCACGGAACATCAA 59.719 52.632 10.02 0.00 42.82 2.57
4963 5183 1.889573 TGCGTTGCACGGAACATCA 60.890 52.632 10.02 0.00 39.47 3.07
4964 5184 2.942879 TGCGTTGCACGGAACATC 59.057 55.556 10.02 0.00 39.47 3.06
4974 5194 3.737172 AAGATGCCCGTGCGTTGC 61.737 61.111 0.00 0.00 41.78 4.17
4975 5195 2.176546 CAAGATGCCCGTGCGTTG 59.823 61.111 0.00 0.00 41.78 4.10
4976 5196 3.737172 GCAAGATGCCCGTGCGTT 61.737 61.111 0.00 0.00 40.20 4.84
4979 5199 0.179084 TACTAGCAAGATGCCCGTGC 60.179 55.000 6.11 6.11 46.52 5.34
4980 5200 2.309528 TTACTAGCAAGATGCCCGTG 57.690 50.000 0.00 0.00 46.52 4.94
4981 5201 3.560636 ATTTACTAGCAAGATGCCCGT 57.439 42.857 0.00 0.00 46.52 5.28
4982 5202 4.632153 ACTATTTACTAGCAAGATGCCCG 58.368 43.478 0.00 0.00 46.52 6.13
4983 5203 7.661847 ACATTACTATTTACTAGCAAGATGCCC 59.338 37.037 0.00 0.00 46.52 5.36
4984 5204 8.608844 ACATTACTATTTACTAGCAAGATGCC 57.391 34.615 0.00 0.00 46.52 4.40
5016 5236 9.599866 TCTGTCGATGTCAAATCAAATACTATT 57.400 29.630 0.00 0.00 0.00 1.73
5017 5237 9.770097 ATCTGTCGATGTCAAATCAAATACTAT 57.230 29.630 0.00 0.00 0.00 2.12
5020 5240 8.006590 GCTATCTGTCGATGTCAAATCAAATAC 58.993 37.037 0.00 0.00 0.00 1.89
5029 5249 6.937436 TTACTAGCTATCTGTCGATGTCAA 57.063 37.500 0.00 0.00 0.00 3.18
5032 5252 6.885952 ACATTACTAGCTATCTGTCGATGT 57.114 37.500 0.00 1.52 0.00 3.06
5042 5262 6.356556 TGGCACATCAAACATTACTAGCTAT 58.643 36.000 0.00 0.00 0.00 2.97
5064 5284 2.032550 CAGCAAGGCGAACTTATGATGG 59.967 50.000 0.00 0.00 37.29 3.51
5103 5327 4.019321 AGCCTATGTACAGGAGCAGAAAAA 60.019 41.667 14.10 0.00 38.00 1.94
5104 5328 3.519510 AGCCTATGTACAGGAGCAGAAAA 59.480 43.478 14.10 0.00 38.00 2.29
5132 5356 2.052782 TCTCCGATTCCGACAGATGA 57.947 50.000 0.00 0.00 38.22 2.92
5156 5380 2.044946 ATCACCCGGCAAAGCTCC 60.045 61.111 0.00 0.00 0.00 4.70
5604 5828 2.172659 CTTGTCGTCGTCGCTCGA 59.827 61.111 7.92 7.92 46.83 4.04
5714 5941 4.457603 ACAGCAACTCAGAGTACAGAGTAG 59.542 45.833 2.64 8.58 40.95 2.57
5845 6073 3.302161 AGGCGTGTAATATACAGGGTGA 58.698 45.455 10.97 0.00 42.91 4.02
5865 6093 9.676195 CTAGAGACACATGATACAAGATGTTAG 57.324 37.037 0.00 0.00 30.14 2.34
5905 6158 3.492137 CCCTAGGGACACGTTATACAAGC 60.492 52.174 24.99 0.00 37.50 4.01
5915 6168 1.079127 CAGCAACCCTAGGGACACG 60.079 63.158 35.38 18.76 38.96 4.49
5927 6180 1.398390 CCCGCTAGTCATTTCAGCAAC 59.602 52.381 0.00 0.00 34.94 4.17
6010 6263 7.360361 CCTTGCTCGTAAAATAAAAGAAGTGT 58.640 34.615 0.00 0.00 0.00 3.55
6016 6277 5.095490 CCTGCCTTGCTCGTAAAATAAAAG 58.905 41.667 0.00 0.00 0.00 2.27
6017 6278 4.762765 TCCTGCCTTGCTCGTAAAATAAAA 59.237 37.500 0.00 0.00 0.00 1.52
6018 6279 4.328536 TCCTGCCTTGCTCGTAAAATAAA 58.671 39.130 0.00 0.00 0.00 1.40
6041 6302 8.924511 TTTTCTCTTAATGAAATCCACAGAGT 57.075 30.769 5.12 0.00 34.04 3.24
6162 6424 2.508300 TGGGTTAGGACTTAGGAATGCC 59.492 50.000 0.00 0.00 0.00 4.40
6164 6426 4.202472 GGGATGGGTTAGGACTTAGGAATG 60.202 50.000 0.00 0.00 0.00 2.67
6165 6427 3.981375 GGGATGGGTTAGGACTTAGGAAT 59.019 47.826 0.00 0.00 0.00 3.01
6166 6428 3.390819 GGGATGGGTTAGGACTTAGGAA 58.609 50.000 0.00 0.00 0.00 3.36
6167 6429 2.361070 GGGGATGGGTTAGGACTTAGGA 60.361 54.545 0.00 0.00 0.00 2.94
6168 6430 2.055579 GGGGATGGGTTAGGACTTAGG 58.944 57.143 0.00 0.00 0.00 2.69
6169 6431 2.771688 TGGGGATGGGTTAGGACTTAG 58.228 52.381 0.00 0.00 0.00 2.18
6171 6433 2.068831 TTGGGGATGGGTTAGGACTT 57.931 50.000 0.00 0.00 0.00 3.01
6172 6434 2.303660 ATTGGGGATGGGTTAGGACT 57.696 50.000 0.00 0.00 0.00 3.85
6173 6435 3.436035 GGTTATTGGGGATGGGTTAGGAC 60.436 52.174 0.00 0.00 0.00 3.85
6174 6436 2.787035 GGTTATTGGGGATGGGTTAGGA 59.213 50.000 0.00 0.00 0.00 2.94
6175 6437 2.516277 TGGTTATTGGGGATGGGTTAGG 59.484 50.000 0.00 0.00 0.00 2.69
6176 6438 3.832527 CTGGTTATTGGGGATGGGTTAG 58.167 50.000 0.00 0.00 0.00 2.34
6177 6439 2.091555 GCTGGTTATTGGGGATGGGTTA 60.092 50.000 0.00 0.00 0.00 2.85
6178 6440 1.342975 GCTGGTTATTGGGGATGGGTT 60.343 52.381 0.00 0.00 0.00 4.11
6179 6441 0.261696 GCTGGTTATTGGGGATGGGT 59.738 55.000 0.00 0.00 0.00 4.51
6180 6442 0.557729 AGCTGGTTATTGGGGATGGG 59.442 55.000 0.00 0.00 0.00 4.00
6213 6477 3.969287 GGTTAGAGGAGTAAAACCGGT 57.031 47.619 0.00 0.00 32.69 5.28
6288 6553 1.204146 ACATACAGGGAGAACCGCAT 58.796 50.000 0.00 0.00 46.96 4.73
6289 6554 1.479323 GTACATACAGGGAGAACCGCA 59.521 52.381 0.00 0.00 46.96 5.69
6306 6571 3.181967 CGCGCTGCAGTGGAGTAC 61.182 66.667 27.56 10.29 0.00 2.73
6335 6714 2.814604 CCGACGGATCAGGCATGA 59.185 61.111 8.64 2.36 40.50 3.07
6433 6850 4.659172 CACCCATGCCCCACACGT 62.659 66.667 0.00 0.00 0.00 4.49
6442 6859 1.099879 GTGATCTCTGCCACCCATGC 61.100 60.000 0.00 0.00 0.00 4.06
6453 6870 2.708325 GGCCTCCCAATAAGTGATCTCT 59.292 50.000 0.00 0.00 0.00 3.10
6503 6920 2.488355 CTGCAAGCTTCGCCATGG 59.512 61.111 7.63 7.63 0.00 3.66
6516 6933 0.529773 GGTCGTATTCCATCGCTGCA 60.530 55.000 0.00 0.00 0.00 4.41
6595 7012 1.906824 GTGGGACGAGGTGGACTGA 60.907 63.158 0.00 0.00 0.00 3.41
6597 7014 1.908793 CAGTGGGACGAGGTGGACT 60.909 63.158 0.00 0.00 0.00 3.85
6619 7036 1.679641 TCGCACTCACCATACCCGA 60.680 57.895 0.00 0.00 0.00 5.14
6625 7042 1.153568 CCATCGTCGCACTCACCAT 60.154 57.895 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.