Multiple sequence alignment - TraesCS7D01G305400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G305400 chr7D 100.000 4126 0 0 1 4126 386843614 386847739 0.000000e+00 7620.0
1 TraesCS7D01G305400 chr7D 74.008 731 169 16 106 825 490443608 490444328 1.130000e-70 278.0
2 TraesCS7D01G305400 chr7B 89.160 3238 189 67 923 4124 382130443 382133554 0.000000e+00 3886.0
3 TraesCS7D01G305400 chr7B 96.970 33 1 0 3452 3484 730395439 730395407 5.760000e-04 56.5
4 TraesCS7D01G305400 chr7A 92.756 2333 111 26 839 3133 436881173 436883485 0.000000e+00 3319.0
5 TraesCS7D01G305400 chr7A 91.194 670 42 9 3281 3946 436883571 436884227 0.000000e+00 894.0
6 TraesCS7D01G305400 chr7A 91.083 157 0 4 3970 4126 436884219 436884361 2.520000e-47 200.0
7 TraesCS7D01G305400 chr1A 81.795 769 135 5 1 766 520175890 520175124 1.250000e-179 640.0
8 TraesCS7D01G305400 chr3D 83.578 682 108 4 6 685 554147277 554146598 1.620000e-178 636.0
9 TraesCS7D01G305400 chr3D 94.444 36 2 0 727 762 403675284 403675319 5.760000e-04 56.5
10 TraesCS7D01G305400 chr1D 84.683 568 85 2 1 566 423828118 423827551 2.150000e-157 566.0
11 TraesCS7D01G305400 chr4A 71.510 702 174 15 8 703 26424138 26423457 9.180000e-37 165.0
12 TraesCS7D01G305400 chr2D 71.408 703 173 25 6 694 252616084 252616772 4.270000e-35 159.0
13 TraesCS7D01G305400 chr3A 72.995 374 80 19 222 584 36555384 36555021 1.210000e-20 111.0
14 TraesCS7D01G305400 chr3A 94.444 36 2 0 727 762 525627500 525627535 5.760000e-04 56.5
15 TraesCS7D01G305400 chr3A 100.000 28 0 0 3454 3481 431818513 431818540 7.000000e-03 52.8
16 TraesCS7D01G305400 chr6D 74.057 212 55 0 29 240 246935293 246935504 2.040000e-13 87.9
17 TraesCS7D01G305400 chr6D 73.659 205 54 0 36 240 246932033 246932237 3.420000e-11 80.5
18 TraesCS7D01G305400 chr6D 83.582 67 11 0 29 95 246935944 246935878 3.440000e-06 63.9
19 TraesCS7D01G305400 chr5D 73.364 214 52 5 29 240 305725426 305725216 1.590000e-09 75.0
20 TraesCS7D01G305400 chr6A 93.478 46 1 2 415 459 611322443 611322399 2.660000e-07 67.6
21 TraesCS7D01G305400 chr3B 94.872 39 2 0 728 766 457204878 457204840 1.240000e-05 62.1
22 TraesCS7D01G305400 chr4D 100.000 31 0 0 3454 3484 113929715 113929685 1.600000e-04 58.4
23 TraesCS7D01G305400 chr1B 100.000 29 0 0 3454 3482 173123443 173123471 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G305400 chr7D 386843614 386847739 4125 False 7620 7620 100.000000 1 4126 1 chr7D.!!$F1 4125
1 TraesCS7D01G305400 chr7D 490443608 490444328 720 False 278 278 74.008000 106 825 1 chr7D.!!$F2 719
2 TraesCS7D01G305400 chr7B 382130443 382133554 3111 False 3886 3886 89.160000 923 4124 1 chr7B.!!$F1 3201
3 TraesCS7D01G305400 chr7A 436881173 436884361 3188 False 1471 3319 91.677667 839 4126 3 chr7A.!!$F1 3287
4 TraesCS7D01G305400 chr1A 520175124 520175890 766 True 640 640 81.795000 1 766 1 chr1A.!!$R1 765
5 TraesCS7D01G305400 chr3D 554146598 554147277 679 True 636 636 83.578000 6 685 1 chr3D.!!$R1 679
6 TraesCS7D01G305400 chr1D 423827551 423828118 567 True 566 566 84.683000 1 566 1 chr1D.!!$R1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
790 792 0.378257 CACAGTGACACGCTTTGCTT 59.622 50.000 0.0 0.0 0.0 3.91 F
917 919 1.029947 CCCAGCCCACATAAACGGTC 61.030 60.000 0.0 0.0 0.0 4.79 F
1682 1725 1.546773 GGGCATGTTGTGTTAGGTCCA 60.547 52.381 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2119 2168 0.458669 GAGCATCAAACTGCATGGGG 59.541 55.000 0.0 0.0 44.77 4.96 R
2120 2169 1.471119 AGAGCATCAAACTGCATGGG 58.529 50.000 0.0 0.0 44.77 4.00 R
3361 3429 1.672356 ATGTCTCCGCCAACACAGC 60.672 57.895 0.0 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.143122 CTGCGCCACTAAAACTTCTGA 58.857 47.619 4.18 0.00 0.00 3.27
54 55 4.907269 TCAGATGCTCACATAATCCCCTTA 59.093 41.667 0.00 0.00 36.35 2.69
55 56 5.369404 TCAGATGCTCACATAATCCCCTTAA 59.631 40.000 0.00 0.00 36.35 1.85
62 63 7.035612 GCTCACATAATCCCCTTAAAAACTTG 58.964 38.462 0.00 0.00 0.00 3.16
68 69 9.771534 CATAATCCCCTTAAAAACTTGAAACAA 57.228 29.630 0.00 0.00 0.00 2.83
74 75 7.768582 CCCCTTAAAAACTTGAAACAAGACATT 59.231 33.333 16.65 10.41 0.00 2.71
158 160 4.996793 TGGTTTTCTCAATCCATCCTTGA 58.003 39.130 0.00 0.00 28.23 3.02
172 174 6.385443 TCCATCCTTGAACTCTACTCCATAT 58.615 40.000 0.00 0.00 0.00 1.78
220 222 5.317808 TCCATTTTTCGAAGAACCCACATA 58.682 37.500 2.87 0.00 45.90 2.29
230 232 5.376625 GAAGAACCCACATAAGATGGCATA 58.623 41.667 0.00 0.00 35.74 3.14
275 277 9.995003 AAAGTTTCATTAGGAACATGCAATAAA 57.005 25.926 0.00 0.00 34.56 1.40
276 278 8.986477 AGTTTCATTAGGAACATGCAATAAAC 57.014 30.769 0.00 0.00 34.56 2.01
287 289 7.870445 GGAACATGCAATAAACCTTTTACTTCA 59.130 33.333 0.00 0.00 0.00 3.02
311 313 9.163894 TCATCTCTTATATTTTCTGGACATCCT 57.836 33.333 0.00 0.00 36.82 3.24
324 326 5.046304 TCTGGACATCCTTTACTGAAGAAGG 60.046 44.000 0.00 0.00 43.04 3.46
335 337 9.508642 CCTTTACTGAAGAAGGTAGAAGATTTT 57.491 33.333 0.00 0.00 38.07 1.82
365 367 7.220030 AGTTTATACATTGTCTAGATGCCTGG 58.780 38.462 0.00 0.00 0.00 4.45
394 396 7.833285 ATGTGGTTAACAACTGATTTACCTT 57.167 32.000 14.21 0.00 43.61 3.50
403 405 6.016555 ACAACTGATTTACCTTATTTGCCCT 58.983 36.000 0.00 0.00 0.00 5.19
432 434 3.260632 ACTTGCCTTGAAAAACAACAGGT 59.739 39.130 0.00 0.00 34.56 4.00
464 466 4.719040 CGAATAACAAGTGGTTTACAGGC 58.281 43.478 0.00 0.00 40.96 4.85
533 535 6.579292 CGTCTATAGATTTTAAGAGGCACGAG 59.421 42.308 5.57 0.00 0.00 4.18
547 549 3.073735 CGAGAGGCCCTCTGCTGT 61.074 66.667 20.40 0.00 41.35 4.40
565 567 4.716784 TGCTGTTATCAGGAAGAGGTACAT 59.283 41.667 3.05 0.00 38.99 2.29
567 569 5.163405 GCTGTTATCAGGAAGAGGTACATGA 60.163 44.000 0.00 0.00 41.57 3.07
572 574 5.860941 TCAGGAAGAGGTACATGAAGATC 57.139 43.478 0.00 0.00 0.00 2.75
577 579 3.375699 AGAGGTACATGAAGATCGGGTT 58.624 45.455 0.00 0.00 0.00 4.11
591 593 1.702957 TCGGGTTTCCCTGACTGATTT 59.297 47.619 3.25 0.00 41.42 2.17
620 622 5.888161 GGATGGTGTGAATTCCTGTAATCTT 59.112 40.000 2.27 0.00 0.00 2.40
621 623 6.038714 GGATGGTGTGAATTCCTGTAATCTTC 59.961 42.308 2.27 0.00 0.00 2.87
623 625 6.173339 TGGTGTGAATTCCTGTAATCTTCTC 58.827 40.000 2.27 0.00 0.00 2.87
633 635 7.690454 TCCTGTAATCTTCTCCCATTGAATA 57.310 36.000 0.00 0.00 0.00 1.75
634 636 8.101309 TCCTGTAATCTTCTCCCATTGAATAA 57.899 34.615 0.00 0.00 0.00 1.40
635 637 8.556589 TCCTGTAATCTTCTCCCATTGAATAAA 58.443 33.333 0.00 0.00 0.00 1.40
636 638 9.189156 CCTGTAATCTTCTCCCATTGAATAAAA 57.811 33.333 0.00 0.00 0.00 1.52
638 640 9.753674 TGTAATCTTCTCCCATTGAATAAAACT 57.246 29.630 0.00 0.00 0.00 2.66
640 642 8.884124 AATCTTCTCCCATTGAATAAAACTGA 57.116 30.769 0.00 0.00 0.00 3.41
641 643 7.928307 TCTTCTCCCATTGAATAAAACTGAG 57.072 36.000 0.00 0.00 0.00 3.35
642 644 7.689299 TCTTCTCCCATTGAATAAAACTGAGA 58.311 34.615 0.00 0.00 0.00 3.27
643 645 8.163408 TCTTCTCCCATTGAATAAAACTGAGAA 58.837 33.333 0.00 0.00 35.65 2.87
644 646 7.687941 TCTCCCATTGAATAAAACTGAGAAC 57.312 36.000 0.00 0.00 0.00 3.01
645 647 7.461749 TCTCCCATTGAATAAAACTGAGAACT 58.538 34.615 0.00 0.00 0.00 3.01
646 648 7.944554 TCTCCCATTGAATAAAACTGAGAACTT 59.055 33.333 0.00 0.00 0.00 2.66
647 649 8.477419 TCCCATTGAATAAAACTGAGAACTTT 57.523 30.769 0.00 0.00 0.00 2.66
648 650 9.581289 TCCCATTGAATAAAACTGAGAACTTTA 57.419 29.630 0.00 0.00 0.00 1.85
649 651 9.626045 CCCATTGAATAAAACTGAGAACTTTAC 57.374 33.333 0.00 0.00 0.00 2.01
652 654 9.899226 ATTGAATAAAACTGAGAACTTTACTGC 57.101 29.630 0.00 0.00 0.00 4.40
653 655 8.677148 TGAATAAAACTGAGAACTTTACTGCT 57.323 30.769 0.00 0.00 0.00 4.24
654 656 9.120538 TGAATAAAACTGAGAACTTTACTGCTT 57.879 29.630 0.00 0.00 0.00 3.91
655 657 9.952188 GAATAAAACTGAGAACTTTACTGCTTT 57.048 29.630 0.00 0.00 0.00 3.51
658 660 6.862711 AACTGAGAACTTTACTGCTTTACC 57.137 37.500 0.00 0.00 0.00 2.85
659 661 5.925509 ACTGAGAACTTTACTGCTTTACCA 58.074 37.500 0.00 0.00 0.00 3.25
660 662 6.354130 ACTGAGAACTTTACTGCTTTACCAA 58.646 36.000 0.00 0.00 0.00 3.67
661 663 6.826741 ACTGAGAACTTTACTGCTTTACCAAA 59.173 34.615 0.00 0.00 0.00 3.28
662 664 7.023197 TGAGAACTTTACTGCTTTACCAAAC 57.977 36.000 0.00 0.00 0.00 2.93
663 665 6.826741 TGAGAACTTTACTGCTTTACCAAACT 59.173 34.615 0.00 0.00 0.00 2.66
664 666 7.012044 TGAGAACTTTACTGCTTTACCAAACTC 59.988 37.037 0.00 0.00 0.00 3.01
665 667 6.826741 AGAACTTTACTGCTTTACCAAACTCA 59.173 34.615 0.00 0.00 0.00 3.41
666 668 7.502561 AGAACTTTACTGCTTTACCAAACTCAT 59.497 33.333 0.00 0.00 0.00 2.90
667 669 7.582667 ACTTTACTGCTTTACCAAACTCATT 57.417 32.000 0.00 0.00 0.00 2.57
668 670 8.685838 ACTTTACTGCTTTACCAAACTCATTA 57.314 30.769 0.00 0.00 0.00 1.90
669 671 8.565416 ACTTTACTGCTTTACCAAACTCATTAC 58.435 33.333 0.00 0.00 0.00 1.89
670 672 8.453238 TTTACTGCTTTACCAAACTCATTACA 57.547 30.769 0.00 0.00 0.00 2.41
671 673 6.952773 ACTGCTTTACCAAACTCATTACAA 57.047 33.333 0.00 0.00 0.00 2.41
672 674 7.524717 ACTGCTTTACCAAACTCATTACAAT 57.475 32.000 0.00 0.00 0.00 2.71
673 675 7.370383 ACTGCTTTACCAAACTCATTACAATG 58.630 34.615 0.00 0.00 37.75 2.82
674 676 7.014230 ACTGCTTTACCAAACTCATTACAATGT 59.986 33.333 2.08 0.00 37.65 2.71
675 677 7.367285 TGCTTTACCAAACTCATTACAATGTC 58.633 34.615 0.00 0.00 37.65 3.06
676 678 7.013750 TGCTTTACCAAACTCATTACAATGTCA 59.986 33.333 0.00 0.00 37.65 3.58
677 679 7.865385 GCTTTACCAAACTCATTACAATGTCAA 59.135 33.333 0.00 0.00 37.65 3.18
678 680 9.180678 CTTTACCAAACTCATTACAATGTCAAC 57.819 33.333 0.00 0.00 37.65 3.18
679 681 6.084326 ACCAAACTCATTACAATGTCAACC 57.916 37.500 0.00 0.00 37.65 3.77
680 682 5.010617 ACCAAACTCATTACAATGTCAACCC 59.989 40.000 0.00 0.00 37.65 4.11
681 683 5.010516 CCAAACTCATTACAATGTCAACCCA 59.989 40.000 0.00 0.00 37.65 4.51
682 684 6.295236 CCAAACTCATTACAATGTCAACCCAT 60.295 38.462 0.00 0.00 37.65 4.00
683 685 6.515272 AACTCATTACAATGTCAACCCATC 57.485 37.500 0.00 0.00 37.65 3.51
684 686 5.819991 ACTCATTACAATGTCAACCCATCT 58.180 37.500 0.00 0.00 37.65 2.90
685 687 6.248433 ACTCATTACAATGTCAACCCATCTT 58.752 36.000 0.00 0.00 37.65 2.40
686 688 6.721208 ACTCATTACAATGTCAACCCATCTTT 59.279 34.615 0.00 0.00 37.65 2.52
687 689 7.094205 ACTCATTACAATGTCAACCCATCTTTC 60.094 37.037 0.00 0.00 37.65 2.62
688 690 6.947733 TCATTACAATGTCAACCCATCTTTCT 59.052 34.615 0.00 0.00 37.65 2.52
689 691 6.573664 TTACAATGTCAACCCATCTTTCTG 57.426 37.500 0.00 0.00 0.00 3.02
690 692 4.473444 ACAATGTCAACCCATCTTTCTGT 58.527 39.130 0.00 0.00 0.00 3.41
691 693 4.279169 ACAATGTCAACCCATCTTTCTGTG 59.721 41.667 0.00 0.00 0.00 3.66
692 694 3.855255 TGTCAACCCATCTTTCTGTGA 57.145 42.857 0.00 0.00 0.00 3.58
693 695 4.163441 TGTCAACCCATCTTTCTGTGAA 57.837 40.909 0.00 0.00 0.00 3.18
694 696 4.136796 TGTCAACCCATCTTTCTGTGAAG 58.863 43.478 0.00 0.00 0.00 3.02
695 697 3.057946 GTCAACCCATCTTTCTGTGAAGC 60.058 47.826 0.00 0.00 0.00 3.86
696 698 2.206576 ACCCATCTTTCTGTGAAGCC 57.793 50.000 0.00 0.00 0.00 4.35
697 699 1.425066 ACCCATCTTTCTGTGAAGCCA 59.575 47.619 0.00 0.00 0.00 4.75
698 700 2.158475 ACCCATCTTTCTGTGAAGCCAA 60.158 45.455 0.00 0.00 0.00 4.52
699 701 2.490903 CCCATCTTTCTGTGAAGCCAAG 59.509 50.000 0.00 0.00 0.00 3.61
700 702 3.152341 CCATCTTTCTGTGAAGCCAAGT 58.848 45.455 0.00 0.00 0.00 3.16
701 703 3.571401 CCATCTTTCTGTGAAGCCAAGTT 59.429 43.478 0.00 0.00 0.00 2.66
702 704 4.038402 CCATCTTTCTGTGAAGCCAAGTTT 59.962 41.667 0.00 0.00 0.00 2.66
703 705 4.637483 TCTTTCTGTGAAGCCAAGTTTG 57.363 40.909 0.00 0.00 0.00 2.93
704 706 4.269183 TCTTTCTGTGAAGCCAAGTTTGA 58.731 39.130 0.00 0.00 0.00 2.69
705 707 4.336433 TCTTTCTGTGAAGCCAAGTTTGAG 59.664 41.667 0.00 0.00 0.00 3.02
706 708 1.949525 TCTGTGAAGCCAAGTTTGAGC 59.050 47.619 0.00 0.00 0.00 4.26
707 709 1.677576 CTGTGAAGCCAAGTTTGAGCA 59.322 47.619 7.66 0.00 0.00 4.26
708 710 2.295349 CTGTGAAGCCAAGTTTGAGCAT 59.705 45.455 7.66 0.00 0.00 3.79
709 711 2.694628 TGTGAAGCCAAGTTTGAGCATT 59.305 40.909 7.66 1.56 0.00 3.56
710 712 3.888323 TGTGAAGCCAAGTTTGAGCATTA 59.112 39.130 7.66 0.00 0.00 1.90
711 713 4.523943 TGTGAAGCCAAGTTTGAGCATTAT 59.476 37.500 7.66 0.00 0.00 1.28
712 714 5.709631 TGTGAAGCCAAGTTTGAGCATTATA 59.290 36.000 7.66 0.00 0.00 0.98
713 715 6.127925 TGTGAAGCCAAGTTTGAGCATTATAG 60.128 38.462 7.66 0.00 0.00 1.31
714 716 4.907879 AGCCAAGTTTGAGCATTATAGC 57.092 40.909 7.66 0.00 0.00 2.97
715 717 3.633986 AGCCAAGTTTGAGCATTATAGCC 59.366 43.478 7.66 0.00 34.23 3.93
716 718 3.633986 GCCAAGTTTGAGCATTATAGCCT 59.366 43.478 0.00 0.00 34.23 4.58
717 719 4.498682 GCCAAGTTTGAGCATTATAGCCTG 60.499 45.833 0.00 0.00 34.23 4.85
718 720 4.498682 CCAAGTTTGAGCATTATAGCCTGC 60.499 45.833 0.00 0.00 38.69 4.85
719 721 3.889815 AGTTTGAGCATTATAGCCTGCA 58.110 40.909 6.74 0.00 40.88 4.41
720 722 4.272489 AGTTTGAGCATTATAGCCTGCAA 58.728 39.130 6.74 0.00 40.88 4.08
721 723 4.706476 AGTTTGAGCATTATAGCCTGCAAA 59.294 37.500 6.74 0.00 40.88 3.68
722 724 5.361857 AGTTTGAGCATTATAGCCTGCAAAT 59.638 36.000 0.00 0.00 40.88 2.32
723 725 5.857471 TTGAGCATTATAGCCTGCAAATT 57.143 34.783 6.74 0.00 40.88 1.82
724 726 5.190992 TGAGCATTATAGCCTGCAAATTG 57.809 39.130 6.74 0.00 40.88 2.32
725 727 4.646040 TGAGCATTATAGCCTGCAAATTGT 59.354 37.500 0.00 0.00 40.88 2.71
726 728 5.192327 AGCATTATAGCCTGCAAATTGTC 57.808 39.130 0.00 0.00 40.88 3.18
727 729 4.038402 AGCATTATAGCCTGCAAATTGTCC 59.962 41.667 0.00 0.00 40.88 4.02
728 730 4.797275 GCATTATAGCCTGCAAATTGTCCC 60.797 45.833 0.00 0.00 38.28 4.46
729 731 2.530460 ATAGCCTGCAAATTGTCCCA 57.470 45.000 0.00 0.00 0.00 4.37
730 732 2.530460 TAGCCTGCAAATTGTCCCAT 57.470 45.000 0.00 0.00 0.00 4.00
731 733 1.648116 AGCCTGCAAATTGTCCCATT 58.352 45.000 0.00 0.00 0.00 3.16
732 734 1.551883 AGCCTGCAAATTGTCCCATTC 59.448 47.619 0.00 0.00 0.00 2.67
733 735 1.551883 GCCTGCAAATTGTCCCATTCT 59.448 47.619 0.00 0.00 0.00 2.40
734 736 2.760092 GCCTGCAAATTGTCCCATTCTA 59.240 45.455 0.00 0.00 0.00 2.10
735 737 3.429410 GCCTGCAAATTGTCCCATTCTAC 60.429 47.826 0.00 0.00 0.00 2.59
736 738 4.019174 CCTGCAAATTGTCCCATTCTACT 58.981 43.478 0.00 0.00 0.00 2.57
737 739 4.096984 CCTGCAAATTGTCCCATTCTACTC 59.903 45.833 0.00 0.00 0.00 2.59
738 740 4.922206 TGCAAATTGTCCCATTCTACTCT 58.078 39.130 0.00 0.00 0.00 3.24
739 741 6.061022 TGCAAATTGTCCCATTCTACTCTA 57.939 37.500 0.00 0.00 0.00 2.43
740 742 6.662755 TGCAAATTGTCCCATTCTACTCTAT 58.337 36.000 0.00 0.00 0.00 1.98
741 743 6.767902 TGCAAATTGTCCCATTCTACTCTATC 59.232 38.462 0.00 0.00 0.00 2.08
742 744 6.767902 GCAAATTGTCCCATTCTACTCTATCA 59.232 38.462 0.00 0.00 0.00 2.15
743 745 7.446625 GCAAATTGTCCCATTCTACTCTATCAT 59.553 37.037 0.00 0.00 0.00 2.45
747 749 8.783660 TTGTCCCATTCTACTCTATCATAAGT 57.216 34.615 0.00 0.00 0.00 2.24
748 750 8.783660 TGTCCCATTCTACTCTATCATAAGTT 57.216 34.615 0.00 0.00 0.00 2.66
749 751 9.213777 TGTCCCATTCTACTCTATCATAAGTTT 57.786 33.333 0.00 0.00 0.00 2.66
769 771 7.781324 AGTTTTCATCATATCCAGTTTTGGT 57.219 32.000 0.00 0.00 45.26 3.67
770 772 7.605449 AGTTTTCATCATATCCAGTTTTGGTG 58.395 34.615 0.00 0.00 45.26 4.17
771 773 5.581126 TTCATCATATCCAGTTTTGGTGC 57.419 39.130 0.00 0.00 45.26 5.01
772 774 4.598022 TCATCATATCCAGTTTTGGTGCA 58.402 39.130 0.00 0.00 45.26 4.57
773 775 4.398988 TCATCATATCCAGTTTTGGTGCAC 59.601 41.667 8.80 8.80 45.26 4.57
774 776 3.760738 TCATATCCAGTTTTGGTGCACA 58.239 40.909 20.43 1.62 45.26 4.57
775 777 3.758023 TCATATCCAGTTTTGGTGCACAG 59.242 43.478 20.43 0.00 45.26 3.66
776 778 2.071778 ATCCAGTTTTGGTGCACAGT 57.928 45.000 20.43 0.00 45.26 3.55
777 779 1.102154 TCCAGTTTTGGTGCACAGTG 58.898 50.000 20.43 10.77 45.26 3.66
778 780 1.102154 CCAGTTTTGGTGCACAGTGA 58.898 50.000 20.43 0.00 39.79 3.41
779 781 1.202290 CCAGTTTTGGTGCACAGTGAC 60.202 52.381 20.43 11.46 39.79 3.67
780 782 1.472082 CAGTTTTGGTGCACAGTGACA 59.528 47.619 20.43 3.64 0.00 3.58
781 783 1.472480 AGTTTTGGTGCACAGTGACAC 59.528 47.619 20.43 15.76 36.03 3.67
782 784 0.449786 TTTTGGTGCACAGTGACACG 59.550 50.000 20.43 0.00 37.68 4.49
783 785 1.987704 TTTGGTGCACAGTGACACGC 61.988 55.000 20.43 7.08 37.68 5.34
784 786 2.588877 GGTGCACAGTGACACGCT 60.589 61.111 20.43 0.00 37.68 5.07
785 787 2.180204 GGTGCACAGTGACACGCTT 61.180 57.895 20.43 0.00 37.68 4.68
786 788 1.714899 GGTGCACAGTGACACGCTTT 61.715 55.000 20.43 0.00 37.68 3.51
787 789 0.589729 GTGCACAGTGACACGCTTTG 60.590 55.000 13.17 0.00 0.00 2.77
788 790 1.655350 GCACAGTGACACGCTTTGC 60.655 57.895 4.15 7.49 39.76 3.68
789 791 2.016961 CACAGTGACACGCTTTGCT 58.983 52.632 0.00 0.00 0.00 3.91
790 792 0.378257 CACAGTGACACGCTTTGCTT 59.622 50.000 0.00 0.00 0.00 3.91
791 793 1.094785 ACAGTGACACGCTTTGCTTT 58.905 45.000 0.00 0.00 0.00 3.51
792 794 2.031560 CACAGTGACACGCTTTGCTTTA 59.968 45.455 0.00 0.00 0.00 1.85
793 795 2.878406 ACAGTGACACGCTTTGCTTTAT 59.122 40.909 0.00 0.00 0.00 1.40
794 796 3.315191 ACAGTGACACGCTTTGCTTTATT 59.685 39.130 0.00 0.00 0.00 1.40
795 797 4.202010 ACAGTGACACGCTTTGCTTTATTT 60.202 37.500 0.00 0.00 0.00 1.40
796 798 4.379793 CAGTGACACGCTTTGCTTTATTTC 59.620 41.667 0.00 0.00 0.00 2.17
797 799 4.275936 AGTGACACGCTTTGCTTTATTTCT 59.724 37.500 0.00 0.00 0.00 2.52
798 800 4.613031 GTGACACGCTTTGCTTTATTTCTC 59.387 41.667 0.00 0.00 0.00 2.87
799 801 4.515191 TGACACGCTTTGCTTTATTTCTCT 59.485 37.500 0.00 0.00 0.00 3.10
800 802 5.035784 ACACGCTTTGCTTTATTTCTCTC 57.964 39.130 0.00 0.00 0.00 3.20
801 803 4.083271 ACACGCTTTGCTTTATTTCTCTCC 60.083 41.667 0.00 0.00 0.00 3.71
802 804 4.072131 ACGCTTTGCTTTATTTCTCTCCA 58.928 39.130 0.00 0.00 0.00 3.86
803 805 4.702131 ACGCTTTGCTTTATTTCTCTCCAT 59.298 37.500 0.00 0.00 0.00 3.41
804 806 5.880332 ACGCTTTGCTTTATTTCTCTCCATA 59.120 36.000 0.00 0.00 0.00 2.74
805 807 6.374333 ACGCTTTGCTTTATTTCTCTCCATAA 59.626 34.615 0.00 0.00 0.00 1.90
806 808 7.094377 ACGCTTTGCTTTATTTCTCTCCATAAA 60.094 33.333 0.00 0.00 0.00 1.40
807 809 7.430502 CGCTTTGCTTTATTTCTCTCCATAAAG 59.569 37.037 7.13 7.13 42.36 1.85
808 810 8.246871 GCTTTGCTTTATTTCTCTCCATAAAGT 58.753 33.333 11.44 0.00 41.85 2.66
809 811 9.565213 CTTTGCTTTATTTCTCTCCATAAAGTG 57.435 33.333 11.44 0.72 41.85 3.16
810 812 8.862325 TTGCTTTATTTCTCTCCATAAAGTGA 57.138 30.769 11.44 1.54 41.85 3.41
811 813 8.268850 TGCTTTATTTCTCTCCATAAAGTGAC 57.731 34.615 11.44 0.00 41.85 3.67
812 814 7.064609 TGCTTTATTTCTCTCCATAAAGTGACG 59.935 37.037 11.44 0.00 41.85 4.35
813 815 7.277981 GCTTTATTTCTCTCCATAAAGTGACGA 59.722 37.037 11.44 0.00 41.85 4.20
814 816 9.151471 CTTTATTTCTCTCCATAAAGTGACGAA 57.849 33.333 0.00 0.00 37.84 3.85
815 817 9.496873 TTTATTTCTCTCCATAAAGTGACGAAA 57.503 29.630 0.00 0.00 0.00 3.46
816 818 6.780706 TTTCTCTCCATAAAGTGACGAAAC 57.219 37.500 0.00 0.00 0.00 2.78
817 819 5.462530 TCTCTCCATAAAGTGACGAAACA 57.537 39.130 0.00 0.00 0.00 2.83
818 820 6.037786 TCTCTCCATAAAGTGACGAAACAT 57.962 37.500 0.00 0.00 0.00 2.71
819 821 6.464222 TCTCTCCATAAAGTGACGAAACATT 58.536 36.000 0.00 0.00 0.00 2.71
820 822 7.608153 TCTCTCCATAAAGTGACGAAACATTA 58.392 34.615 0.00 0.00 0.00 1.90
821 823 8.258007 TCTCTCCATAAAGTGACGAAACATTAT 58.742 33.333 0.00 0.00 0.00 1.28
822 824 9.529325 CTCTCCATAAAGTGACGAAACATTATA 57.471 33.333 0.00 0.00 0.00 0.98
823 825 9.878667 TCTCCATAAAGTGACGAAACATTATAA 57.121 29.630 0.00 0.00 0.00 0.98
825 827 9.661563 TCCATAAAGTGACGAAACATTATAAGT 57.338 29.630 0.00 0.00 0.00 2.24
826 828 9.702726 CCATAAAGTGACGAAACATTATAAGTG 57.297 33.333 0.00 0.00 0.00 3.16
827 829 9.702726 CATAAAGTGACGAAACATTATAAGTGG 57.297 33.333 0.00 0.00 0.00 4.00
828 830 7.972832 AAAGTGACGAAACATTATAAGTGGA 57.027 32.000 0.00 0.00 0.00 4.02
829 831 6.963049 AGTGACGAAACATTATAAGTGGAC 57.037 37.500 0.00 0.00 0.00 4.02
830 832 6.698380 AGTGACGAAACATTATAAGTGGACT 58.302 36.000 0.00 0.00 0.00 3.85
831 833 7.159372 AGTGACGAAACATTATAAGTGGACTT 58.841 34.615 0.00 0.00 39.85 3.01
832 834 7.331193 AGTGACGAAACATTATAAGTGGACTTC 59.669 37.037 0.00 0.00 37.40 3.01
833 835 6.592607 TGACGAAACATTATAAGTGGACTTCC 59.407 38.462 0.00 0.00 37.40 3.46
834 836 6.469410 ACGAAACATTATAAGTGGACTTCCA 58.531 36.000 0.00 0.00 45.30 3.53
886 888 3.555168 GGAGGCTAGAATGTGATTACGGG 60.555 52.174 0.00 0.00 0.00 5.28
917 919 1.029947 CCCAGCCCACATAAACGGTC 61.030 60.000 0.00 0.00 0.00 4.79
1146 1170 2.292559 CCCGAACCCTAACCCCGAA 61.293 63.158 0.00 0.00 0.00 4.30
1251 1281 3.764466 CAGCCGGCTCTCGACCTT 61.764 66.667 30.29 0.00 42.43 3.50
1307 1337 2.668212 CGCCGGAAAGAAGGTGCA 60.668 61.111 5.05 0.00 0.00 4.57
1317 1347 2.034066 AAGGTGCACATCCCGTGG 59.966 61.111 20.43 0.00 46.45 4.94
1354 1384 4.323562 CCCCCTTTTATTCTCTGTTCGACT 60.324 45.833 0.00 0.00 0.00 4.18
1443 1473 6.286758 TGATTCAAAACCTGCAAAGCATTAA 58.713 32.000 0.00 0.00 38.13 1.40
1449 1479 4.670896 ACCTGCAAAGCATTAACAACTT 57.329 36.364 0.00 0.00 38.13 2.66
1450 1480 4.620982 ACCTGCAAAGCATTAACAACTTC 58.379 39.130 0.00 0.00 38.13 3.01
1612 1642 7.971168 TGGTCAATATAAAACAATAAGGCGTTG 59.029 33.333 0.97 0.00 0.00 4.10
1646 1676 9.499479 CAGAATATGCTGTGATTAATAGAAGGT 57.501 33.333 2.05 0.00 0.00 3.50
1649 1679 8.854614 ATATGCTGTGATTAATAGAAGGTTCC 57.145 34.615 0.00 0.00 0.00 3.62
1650 1680 5.437060 TGCTGTGATTAATAGAAGGTTCCC 58.563 41.667 0.00 0.00 0.00 3.97
1652 1682 5.684030 GCTGTGATTAATAGAAGGTTCCCGA 60.684 44.000 0.00 0.00 0.00 5.14
1682 1725 1.546773 GGGCATGTTGTGTTAGGTCCA 60.547 52.381 0.00 0.00 0.00 4.02
1736 1779 3.562182 TGTTAGATGATCCGTGCTCCTA 58.438 45.455 0.00 0.00 0.00 2.94
1800 1843 1.673033 CCGTTGCTGGTAGAGTGGAAG 60.673 57.143 0.00 0.00 0.00 3.46
1818 1861 7.875971 AGTGGAAGTTTGTCTGTTTTATCATC 58.124 34.615 0.00 0.00 0.00 2.92
1947 1991 9.809096 CTAATTATACTCTCTTTGTCTTCTGCA 57.191 33.333 0.00 0.00 0.00 4.41
1973 2017 7.663081 ACCTTCTGCGATTGTGATTATATCATT 59.337 33.333 0.00 0.00 42.04 2.57
2062 2106 1.940613 AGACCGAACTTGTGCTGAAAC 59.059 47.619 0.00 0.00 0.00 2.78
2119 2168 6.148811 TGACAATAAAAGAACATCGTCCCTTC 59.851 38.462 0.00 0.00 0.00 3.46
2120 2169 5.414765 ACAATAAAAGAACATCGTCCCTTCC 59.585 40.000 0.00 0.00 0.00 3.46
2149 2198 0.599558 TTGATGCTCTTGTTGCTGCC 59.400 50.000 0.00 0.00 0.00 4.85
2210 2259 6.539649 TTCAAGAACTTCAGGTATGTTTCG 57.460 37.500 0.00 0.00 0.00 3.46
2272 2321 9.742144 TGAACATAGGCTAACTTACCAAAATAA 57.258 29.630 0.00 0.00 0.00 1.40
2421 2473 5.734503 GCAGCACCTCATTTATAGGAAAAGC 60.735 44.000 0.00 0.00 37.57 3.51
2425 2477 6.458888 GCACCTCATTTATAGGAAAAGCACTC 60.459 42.308 0.00 0.00 37.57 3.51
2426 2478 6.038714 CACCTCATTTATAGGAAAAGCACTCC 59.961 42.308 0.00 0.00 37.57 3.85
2430 2482 6.377146 TCATTTATAGGAAAAGCACTCCCAAC 59.623 38.462 0.00 0.00 32.95 3.77
2431 2483 5.514500 TTATAGGAAAAGCACTCCCAACT 57.486 39.130 0.00 0.00 32.95 3.16
2432 2484 6.630203 TTATAGGAAAAGCACTCCCAACTA 57.370 37.500 0.00 0.00 32.95 2.24
2433 2485 5.717119 ATAGGAAAAGCACTCCCAACTAT 57.283 39.130 0.00 0.00 32.95 2.12
2434 2486 6.824958 ATAGGAAAAGCACTCCCAACTATA 57.175 37.500 0.00 0.00 32.95 1.31
2436 2488 4.288626 AGGAAAAGCACTCCCAACTATACA 59.711 41.667 0.00 0.00 32.95 2.29
2437 2489 5.007682 GGAAAAGCACTCCCAACTATACAA 58.992 41.667 0.00 0.00 0.00 2.41
2438 2490 5.123979 GGAAAAGCACTCCCAACTATACAAG 59.876 44.000 0.00 0.00 0.00 3.16
2439 2491 5.499004 AAAGCACTCCCAACTATACAAGA 57.501 39.130 0.00 0.00 0.00 3.02
2440 2492 5.700402 AAGCACTCCCAACTATACAAGAT 57.300 39.130 0.00 0.00 0.00 2.40
2441 2493 5.700402 AGCACTCCCAACTATACAAGATT 57.300 39.130 0.00 0.00 0.00 2.40
2442 2494 5.431765 AGCACTCCCAACTATACAAGATTG 58.568 41.667 0.00 0.00 0.00 2.67
2443 2495 5.045578 AGCACTCCCAACTATACAAGATTGT 60.046 40.000 3.37 3.37 44.86 2.71
2460 2512 9.709495 ACAAGATTGTAACATGTAATTTGCAAT 57.291 25.926 10.24 10.24 39.73 3.56
2505 2557 4.471025 TGGATGTGGTCTCATTGTATCTGT 59.529 41.667 0.00 0.00 0.00 3.41
2527 2580 7.865385 TCTGTTAATGGCAGTTTAACATGTTTC 59.135 33.333 20.67 8.06 44.29 2.78
2669 2724 8.460428 ACGTTTGTGATTCTAAAAGTTAAACCA 58.540 29.630 0.00 0.00 0.00 3.67
2698 2753 4.691860 GCAGATGCTTGATGTTACAAGT 57.308 40.909 0.00 0.00 45.98 3.16
2699 2754 5.051891 GCAGATGCTTGATGTTACAAGTT 57.948 39.130 0.00 0.00 45.98 2.66
2700 2755 5.464168 GCAGATGCTTGATGTTACAAGTTT 58.536 37.500 0.00 0.00 45.98 2.66
2701 2756 6.611381 GCAGATGCTTGATGTTACAAGTTTA 58.389 36.000 0.00 0.00 45.98 2.01
2751 2806 9.802039 TTTTTAGGACAAAATTAGCTCTTCCTA 57.198 29.630 0.00 0.00 33.91 2.94
2753 2808 8.788325 TTAGGACAAAATTAGCTCTTCCTAAC 57.212 34.615 0.00 0.00 38.66 2.34
2788 2843 1.271926 GGCCACCATTTGTCAGTACCT 60.272 52.381 0.00 0.00 0.00 3.08
2878 2936 9.410556 CTAAGATCCACATTTACCTTGTTTTTG 57.589 33.333 0.00 0.00 0.00 2.44
3007 3065 5.230182 TGCACTTCTTATCATGGTATAGCG 58.770 41.667 0.00 0.00 0.00 4.26
3063 3121 4.998671 TTCACAGAACTGGAATTGCAAA 57.001 36.364 1.71 0.00 34.19 3.68
3131 3189 6.594788 TTGAAGAAGCCAGATTAGCAATTT 57.405 33.333 0.00 0.00 0.00 1.82
3132 3190 7.701539 TTGAAGAAGCCAGATTAGCAATTTA 57.298 32.000 0.00 0.00 0.00 1.40
3133 3191 7.701539 TGAAGAAGCCAGATTAGCAATTTAA 57.298 32.000 0.00 0.00 0.00 1.52
3134 3192 7.765307 TGAAGAAGCCAGATTAGCAATTTAAG 58.235 34.615 0.00 0.00 0.00 1.85
3135 3193 7.611467 TGAAGAAGCCAGATTAGCAATTTAAGA 59.389 33.333 0.00 0.00 0.00 2.10
3136 3194 8.530804 AAGAAGCCAGATTAGCAATTTAAGAT 57.469 30.769 0.00 0.00 0.00 2.40
3137 3195 8.530804 AGAAGCCAGATTAGCAATTTAAGATT 57.469 30.769 0.00 0.00 0.00 2.40
3138 3196 9.632638 AGAAGCCAGATTAGCAATTTAAGATTA 57.367 29.630 0.00 0.00 0.00 1.75
3139 3197 9.890352 GAAGCCAGATTAGCAATTTAAGATTAG 57.110 33.333 0.00 0.00 0.00 1.73
3140 3198 7.880105 AGCCAGATTAGCAATTTAAGATTAGC 58.120 34.615 0.00 0.00 0.00 3.09
3141 3199 7.503566 AGCCAGATTAGCAATTTAAGATTAGCA 59.496 33.333 0.00 0.00 0.00 3.49
3142 3200 8.137437 GCCAGATTAGCAATTTAAGATTAGCAA 58.863 33.333 0.00 0.00 0.00 3.91
3275 3343 7.387673 AGCCCTTTGTAAAATTTACATTCAAGC 59.612 33.333 17.94 16.03 0.00 4.01
3291 3359 6.256321 ACATTCAAGCTTTAGTTTTTGCAGTG 59.744 34.615 0.00 0.00 0.00 3.66
3312 3380 8.989980 GCAGTGTATCCTAAATATTGAAGGTAC 58.010 37.037 13.99 14.42 0.00 3.34
3337 3405 5.461526 GCTTTAGTTGACTCCCATTCAAAC 58.538 41.667 0.00 0.00 34.78 2.93
3342 3410 4.956075 AGTTGACTCCCATTCAAACTTGTT 59.044 37.500 0.00 0.00 34.78 2.83
3343 3411 5.422012 AGTTGACTCCCATTCAAACTTGTTT 59.578 36.000 0.00 0.00 34.78 2.83
3361 3429 3.751175 TGTTTCATTTCAGGTAGCCGAAG 59.249 43.478 0.00 0.00 0.00 3.79
3418 3486 5.054477 TGGTGTTTACTCTCTTGTACAAGC 58.946 41.667 27.49 13.27 38.28 4.01
3435 3503 7.446769 TGTACAAGCCTCTAAAATGTCTTGTA 58.553 34.615 8.12 8.12 42.52 2.41
3452 3520 6.204688 TGTCTTGTACAAGCCTCTAAAATGTG 59.795 38.462 27.49 3.35 38.28 3.21
3503 3571 5.763204 TCCTAATGTCTTGACAGTTTCCAAC 59.237 40.000 8.97 0.00 0.00 3.77
3555 3623 5.627367 TGTTTTAACTTGCGTGCATTGATAC 59.373 36.000 0.00 0.00 0.00 2.24
3654 3724 1.084289 GCGTGGATTGGTCTGGTAAC 58.916 55.000 0.00 0.00 0.00 2.50
3658 3730 3.000727 GTGGATTGGTCTGGTAACTTCG 58.999 50.000 0.00 0.00 37.61 3.79
3660 3732 2.354805 GGATTGGTCTGGTAACTTCGCT 60.355 50.000 0.00 0.00 37.61 4.93
3670 3742 2.167075 GGTAACTTCGCTAGGGCAACTA 59.833 50.000 1.02 0.00 38.60 2.24
3679 3751 5.676552 TCGCTAGGGCAACTAAAATGATAA 58.323 37.500 1.02 0.00 38.60 1.75
3725 3801 5.545335 AGCATAGGATGGACATCTCATGTTA 59.455 40.000 18.69 5.09 45.03 2.41
3768 3845 3.495193 CTGATTCGAACAATGGCAGTTG 58.505 45.455 0.00 2.94 35.25 3.16
3781 3858 2.361757 TGGCAGTTGTGATGGTGAAAAG 59.638 45.455 0.00 0.00 0.00 2.27
3794 3871 7.920682 GTGATGGTGAAAAGAAACACACTAAAT 59.079 33.333 0.00 0.00 38.57 1.40
3808 3885 6.607019 ACACACTAAATTTTCTAGGGGACAA 58.393 36.000 0.00 0.00 0.00 3.18
3852 3929 5.547465 TCTTATTTTCTCGGCTTCAGTGAA 58.453 37.500 5.25 5.25 0.00 3.18
3866 3943 1.846124 GTGAACCCCCTGGACTGGA 60.846 63.158 0.00 0.00 34.81 3.86
3937 4025 0.035317 AAGCGGTCAGATGAGCACAA 59.965 50.000 12.11 0.00 42.28 3.33
3938 4026 0.390866 AGCGGTCAGATGAGCACAAG 60.391 55.000 12.11 0.00 42.28 3.16
3939 4027 0.390340 GCGGTCAGATGAGCACAAGA 60.390 55.000 12.11 0.00 42.28 3.02
3940 4028 1.638133 CGGTCAGATGAGCACAAGAG 58.362 55.000 12.11 0.00 42.28 2.85
3941 4029 1.203287 CGGTCAGATGAGCACAAGAGA 59.797 52.381 12.11 0.00 42.28 3.10
3942 4030 2.734809 CGGTCAGATGAGCACAAGAGAG 60.735 54.545 12.11 0.00 42.28 3.20
3943 4031 2.495270 GGTCAGATGAGCACAAGAGAGA 59.505 50.000 7.14 0.00 41.81 3.10
3944 4032 3.429272 GGTCAGATGAGCACAAGAGAGAG 60.429 52.174 7.14 0.00 41.81 3.20
3945 4033 3.443329 GTCAGATGAGCACAAGAGAGAGA 59.557 47.826 0.00 0.00 0.00 3.10
3946 4034 3.695556 TCAGATGAGCACAAGAGAGAGAG 59.304 47.826 0.00 0.00 0.00 3.20
3947 4035 3.695556 CAGATGAGCACAAGAGAGAGAGA 59.304 47.826 0.00 0.00 0.00 3.10
3948 4036 3.949754 AGATGAGCACAAGAGAGAGAGAG 59.050 47.826 0.00 0.00 0.00 3.20
3949 4037 3.431673 TGAGCACAAGAGAGAGAGAGA 57.568 47.619 0.00 0.00 0.00 3.10
3950 4038 3.346315 TGAGCACAAGAGAGAGAGAGAG 58.654 50.000 0.00 0.00 0.00 3.20
3951 4039 3.008923 TGAGCACAAGAGAGAGAGAGAGA 59.991 47.826 0.00 0.00 0.00 3.10
3952 4040 3.614092 AGCACAAGAGAGAGAGAGAGAG 58.386 50.000 0.00 0.00 0.00 3.20
3953 4041 3.264193 AGCACAAGAGAGAGAGAGAGAGA 59.736 47.826 0.00 0.00 0.00 3.10
3954 4042 3.624861 GCACAAGAGAGAGAGAGAGAGAG 59.375 52.174 0.00 0.00 0.00 3.20
3955 4043 4.623886 GCACAAGAGAGAGAGAGAGAGAGA 60.624 50.000 0.00 0.00 0.00 3.10
3956 4044 5.114780 CACAAGAGAGAGAGAGAGAGAGAG 58.885 50.000 0.00 0.00 0.00 3.20
3957 4045 5.026121 ACAAGAGAGAGAGAGAGAGAGAGA 58.974 45.833 0.00 0.00 0.00 3.10
3958 4046 5.128499 ACAAGAGAGAGAGAGAGAGAGAGAG 59.872 48.000 0.00 0.00 0.00 3.20
3959 4047 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
3960 4048 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3961 4049 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3962 4050 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3963 4051 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3964 4052 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3965 4053 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3966 4054 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3967 4055 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3968 4056 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4018 4107 4.082679 TGAGATGAGATGAGATGAGATGCG 60.083 45.833 0.00 0.00 0.00 4.73
4019 4108 2.435533 TGAGATGAGATGAGATGCGC 57.564 50.000 0.00 0.00 0.00 6.09
4020 4109 1.335689 TGAGATGAGATGAGATGCGCG 60.336 52.381 0.00 0.00 0.00 6.86
4021 4110 0.957362 AGATGAGATGAGATGCGCGA 59.043 50.000 12.10 0.00 0.00 5.87
4022 4111 1.545136 AGATGAGATGAGATGCGCGAT 59.455 47.619 12.10 0.00 0.00 4.58
4023 4112 1.654602 GATGAGATGAGATGCGCGATG 59.345 52.381 12.10 0.00 0.00 3.84
4024 4113 0.386838 TGAGATGAGATGCGCGATGT 59.613 50.000 12.10 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.072112 TGTTGATTCAGAAGTTTTAGTGGC 57.928 37.500 0.00 0.00 0.00 5.01
20 21 7.818997 ATGTGAGCATCTGAATATGTTGATT 57.181 32.000 0.00 0.00 34.92 2.57
86 87 3.505680 TCAAGTCTGTTGCACAAGTTGTT 59.494 39.130 5.57 0.00 0.00 2.83
107 108 2.152016 GCTGGTAAGGAAGTGTTGGTC 58.848 52.381 0.00 0.00 0.00 4.02
355 357 2.442878 ACCACATATTGCCAGGCATCTA 59.557 45.455 17.09 10.83 38.76 1.98
365 367 9.072294 GTAAATCAGTTGTTAACCACATATTGC 57.928 33.333 11.97 2.56 34.43 3.56
394 396 2.513753 CAAGTGGTGACAGGGCAAATA 58.486 47.619 0.00 0.00 44.46 1.40
403 405 2.136298 TTTCAAGGCAAGTGGTGACA 57.864 45.000 0.00 0.00 37.96 3.58
432 434 4.154015 CCACTTGTTATTCGCAGATGACAA 59.846 41.667 6.51 6.51 35.04 3.18
477 479 1.354368 CATGAGTGGGGTAAAGGTGGT 59.646 52.381 0.00 0.00 0.00 4.16
533 535 0.833287 TGATAACAGCAGAGGGCCTC 59.167 55.000 26.42 26.42 46.50 4.70
547 549 7.255625 CGATCTTCATGTACCTCTTCCTGATAA 60.256 40.741 0.00 0.00 0.00 1.75
584 586 1.351017 ACACCATCCCGTGAAATCAGT 59.649 47.619 0.00 0.00 37.20 3.41
586 588 1.349357 TCACACCATCCCGTGAAATCA 59.651 47.619 0.00 0.00 39.14 2.57
587 589 2.107950 TCACACCATCCCGTGAAATC 57.892 50.000 0.00 0.00 39.14 2.17
591 593 1.339631 GGAATTCACACCATCCCGTGA 60.340 52.381 7.93 0.00 40.30 4.35
620 622 7.461749 AGTTCTCAGTTTTATTCAATGGGAGA 58.538 34.615 0.00 0.00 0.00 3.71
621 623 7.693969 AGTTCTCAGTTTTATTCAATGGGAG 57.306 36.000 0.00 0.00 0.00 4.30
623 625 9.626045 GTAAAGTTCTCAGTTTTATTCAATGGG 57.374 33.333 0.00 0.00 0.00 4.00
633 635 7.338449 TGGTAAAGCAGTAAAGTTCTCAGTTTT 59.662 33.333 0.00 0.00 0.00 2.43
634 636 6.826741 TGGTAAAGCAGTAAAGTTCTCAGTTT 59.173 34.615 0.00 0.00 0.00 2.66
635 637 6.354130 TGGTAAAGCAGTAAAGTTCTCAGTT 58.646 36.000 0.00 0.00 0.00 3.16
636 638 5.925509 TGGTAAAGCAGTAAAGTTCTCAGT 58.074 37.500 0.00 0.00 0.00 3.41
637 639 6.861065 TTGGTAAAGCAGTAAAGTTCTCAG 57.139 37.500 0.00 0.00 0.00 3.35
638 640 6.826741 AGTTTGGTAAAGCAGTAAAGTTCTCA 59.173 34.615 0.00 0.00 0.00 3.27
639 641 7.012044 TGAGTTTGGTAAAGCAGTAAAGTTCTC 59.988 37.037 0.00 0.00 0.00 2.87
640 642 6.826741 TGAGTTTGGTAAAGCAGTAAAGTTCT 59.173 34.615 0.00 0.00 0.00 3.01
641 643 7.023197 TGAGTTTGGTAAAGCAGTAAAGTTC 57.977 36.000 0.00 0.00 0.00 3.01
642 644 7.582667 ATGAGTTTGGTAAAGCAGTAAAGTT 57.417 32.000 0.00 0.00 0.00 2.66
643 645 7.582667 AATGAGTTTGGTAAAGCAGTAAAGT 57.417 32.000 0.00 0.00 0.00 2.66
644 646 8.564574 TGTAATGAGTTTGGTAAAGCAGTAAAG 58.435 33.333 0.00 0.00 0.00 1.85
645 647 8.453238 TGTAATGAGTTTGGTAAAGCAGTAAA 57.547 30.769 0.00 0.00 0.00 2.01
646 648 8.453238 TTGTAATGAGTTTGGTAAAGCAGTAA 57.547 30.769 0.00 0.00 0.00 2.24
647 649 8.511321 CATTGTAATGAGTTTGGTAAAGCAGTA 58.489 33.333 0.00 0.00 38.70 2.74
648 650 6.952773 TTGTAATGAGTTTGGTAAAGCAGT 57.047 33.333 0.00 0.00 0.00 4.40
649 651 7.370383 ACATTGTAATGAGTTTGGTAAAGCAG 58.630 34.615 11.29 0.00 39.67 4.24
650 652 7.013750 TGACATTGTAATGAGTTTGGTAAAGCA 59.986 33.333 11.29 0.00 39.67 3.91
651 653 7.367285 TGACATTGTAATGAGTTTGGTAAAGC 58.633 34.615 11.29 0.00 39.67 3.51
652 654 9.180678 GTTGACATTGTAATGAGTTTGGTAAAG 57.819 33.333 11.29 0.00 39.67 1.85
653 655 8.138712 GGTTGACATTGTAATGAGTTTGGTAAA 58.861 33.333 11.29 0.00 39.67 2.01
654 656 7.255660 GGGTTGACATTGTAATGAGTTTGGTAA 60.256 37.037 11.29 0.00 39.67 2.85
655 657 6.207810 GGGTTGACATTGTAATGAGTTTGGTA 59.792 38.462 11.29 0.00 39.67 3.25
656 658 5.010617 GGGTTGACATTGTAATGAGTTTGGT 59.989 40.000 11.29 0.00 39.67 3.67
657 659 5.010516 TGGGTTGACATTGTAATGAGTTTGG 59.989 40.000 11.29 0.00 39.67 3.28
658 660 6.083098 TGGGTTGACATTGTAATGAGTTTG 57.917 37.500 11.29 0.00 39.67 2.93
659 661 6.721208 AGATGGGTTGACATTGTAATGAGTTT 59.279 34.615 11.29 0.00 39.67 2.66
660 662 6.248433 AGATGGGTTGACATTGTAATGAGTT 58.752 36.000 11.29 0.00 39.67 3.01
661 663 5.819991 AGATGGGTTGACATTGTAATGAGT 58.180 37.500 11.29 0.00 39.67 3.41
662 664 6.764308 AAGATGGGTTGACATTGTAATGAG 57.236 37.500 11.29 0.00 39.67 2.90
663 665 6.947733 AGAAAGATGGGTTGACATTGTAATGA 59.052 34.615 11.29 0.00 39.67 2.57
664 666 7.031372 CAGAAAGATGGGTTGACATTGTAATG 58.969 38.462 3.17 3.17 42.10 1.90
665 667 6.721208 ACAGAAAGATGGGTTGACATTGTAAT 59.279 34.615 0.00 0.00 0.00 1.89
666 668 6.016360 CACAGAAAGATGGGTTGACATTGTAA 60.016 38.462 0.00 0.00 0.00 2.41
667 669 5.473162 CACAGAAAGATGGGTTGACATTGTA 59.527 40.000 0.00 0.00 0.00 2.41
668 670 4.279169 CACAGAAAGATGGGTTGACATTGT 59.721 41.667 0.00 0.00 0.00 2.71
669 671 4.520111 TCACAGAAAGATGGGTTGACATTG 59.480 41.667 0.00 0.00 0.00 2.82
670 672 4.728772 TCACAGAAAGATGGGTTGACATT 58.271 39.130 0.00 0.00 0.00 2.71
671 673 4.371624 TCACAGAAAGATGGGTTGACAT 57.628 40.909 0.00 0.00 0.00 3.06
672 674 3.855255 TCACAGAAAGATGGGTTGACA 57.145 42.857 0.00 0.00 0.00 3.58
673 675 3.057946 GCTTCACAGAAAGATGGGTTGAC 60.058 47.826 0.00 0.00 0.00 3.18
674 676 3.149196 GCTTCACAGAAAGATGGGTTGA 58.851 45.455 0.00 0.00 0.00 3.18
675 677 2.229784 GGCTTCACAGAAAGATGGGTTG 59.770 50.000 0.00 0.00 0.00 3.77
676 678 2.158475 TGGCTTCACAGAAAGATGGGTT 60.158 45.455 0.00 0.00 0.00 4.11
677 679 1.425066 TGGCTTCACAGAAAGATGGGT 59.575 47.619 0.00 0.00 0.00 4.51
678 680 2.205022 TGGCTTCACAGAAAGATGGG 57.795 50.000 0.00 0.00 0.00 4.00
679 681 3.152341 ACTTGGCTTCACAGAAAGATGG 58.848 45.455 0.00 0.00 0.00 3.51
680 682 4.843220 AACTTGGCTTCACAGAAAGATG 57.157 40.909 0.00 0.00 0.00 2.90
681 683 4.889409 TCAAACTTGGCTTCACAGAAAGAT 59.111 37.500 0.00 0.00 0.00 2.40
682 684 4.269183 TCAAACTTGGCTTCACAGAAAGA 58.731 39.130 0.00 0.00 0.00 2.52
683 685 4.604976 CTCAAACTTGGCTTCACAGAAAG 58.395 43.478 0.00 0.00 0.00 2.62
684 686 3.181487 GCTCAAACTTGGCTTCACAGAAA 60.181 43.478 0.00 0.00 0.00 2.52
685 687 2.358898 GCTCAAACTTGGCTTCACAGAA 59.641 45.455 0.00 0.00 0.00 3.02
686 688 1.949525 GCTCAAACTTGGCTTCACAGA 59.050 47.619 0.00 0.00 0.00 3.41
687 689 1.677576 TGCTCAAACTTGGCTTCACAG 59.322 47.619 0.00 0.00 0.00 3.66
688 690 1.761449 TGCTCAAACTTGGCTTCACA 58.239 45.000 0.00 0.00 0.00 3.58
689 691 3.375782 AATGCTCAAACTTGGCTTCAC 57.624 42.857 0.00 0.00 0.00 3.18
690 692 5.163622 GCTATAATGCTCAAACTTGGCTTCA 60.164 40.000 0.00 0.00 0.00 3.02
691 693 5.277047 GCTATAATGCTCAAACTTGGCTTC 58.723 41.667 0.00 0.00 0.00 3.86
692 694 4.098501 GGCTATAATGCTCAAACTTGGCTT 59.901 41.667 0.00 0.00 0.00 4.35
693 695 3.633986 GGCTATAATGCTCAAACTTGGCT 59.366 43.478 0.00 0.00 0.00 4.75
694 696 3.633986 AGGCTATAATGCTCAAACTTGGC 59.366 43.478 0.00 0.00 0.00 4.52
695 697 4.498682 GCAGGCTATAATGCTCAAACTTGG 60.499 45.833 0.00 0.00 39.38 3.61
696 698 4.096833 TGCAGGCTATAATGCTCAAACTTG 59.903 41.667 0.00 0.00 42.98 3.16
697 699 4.272489 TGCAGGCTATAATGCTCAAACTT 58.728 39.130 0.00 0.00 42.98 2.66
698 700 3.889815 TGCAGGCTATAATGCTCAAACT 58.110 40.909 0.00 0.00 42.98 2.66
699 701 4.637483 TTGCAGGCTATAATGCTCAAAC 57.363 40.909 0.00 0.00 42.98 2.93
700 702 5.857471 ATTTGCAGGCTATAATGCTCAAA 57.143 34.783 0.00 0.00 42.98 2.69
701 703 5.127519 ACAATTTGCAGGCTATAATGCTCAA 59.872 36.000 0.00 0.00 42.98 3.02
702 704 4.646040 ACAATTTGCAGGCTATAATGCTCA 59.354 37.500 0.00 0.00 42.98 4.26
703 705 5.192327 ACAATTTGCAGGCTATAATGCTC 57.808 39.130 0.00 0.00 42.98 4.26
704 706 4.038402 GGACAATTTGCAGGCTATAATGCT 59.962 41.667 0.00 0.00 42.98 3.79
705 707 4.301628 GGACAATTTGCAGGCTATAATGC 58.698 43.478 0.00 0.00 42.86 3.56
706 708 4.341806 TGGGACAATTTGCAGGCTATAATG 59.658 41.667 0.00 0.00 31.92 1.90
707 709 4.545678 TGGGACAATTTGCAGGCTATAAT 58.454 39.130 0.00 0.00 31.92 1.28
708 710 3.974719 TGGGACAATTTGCAGGCTATAA 58.025 40.909 0.00 0.00 31.92 0.98
709 711 3.660970 TGGGACAATTTGCAGGCTATA 57.339 42.857 0.00 0.00 31.92 1.31
710 712 2.530460 TGGGACAATTTGCAGGCTAT 57.470 45.000 0.00 0.00 31.92 2.97
712 714 4.950200 TGGGACAATTTGCAGGCT 57.050 50.000 0.00 0.00 31.92 4.58
743 745 9.308000 ACCAAAACTGGATATGATGAAAACTTA 57.692 29.630 0.00 0.00 0.00 2.24
744 746 8.090214 CACCAAAACTGGATATGATGAAAACTT 58.910 33.333 0.00 0.00 0.00 2.66
745 747 7.605449 CACCAAAACTGGATATGATGAAAACT 58.395 34.615 0.00 0.00 0.00 2.66
746 748 6.311200 GCACCAAAACTGGATATGATGAAAAC 59.689 38.462 0.00 0.00 0.00 2.43
747 749 6.014755 TGCACCAAAACTGGATATGATGAAAA 60.015 34.615 0.00 0.00 0.00 2.29
748 750 5.479724 TGCACCAAAACTGGATATGATGAAA 59.520 36.000 0.00 0.00 0.00 2.69
749 751 5.015515 TGCACCAAAACTGGATATGATGAA 58.984 37.500 0.00 0.00 0.00 2.57
750 752 4.398988 GTGCACCAAAACTGGATATGATGA 59.601 41.667 5.22 0.00 0.00 2.92
751 753 4.158209 TGTGCACCAAAACTGGATATGATG 59.842 41.667 15.69 0.00 0.00 3.07
752 754 4.343231 TGTGCACCAAAACTGGATATGAT 58.657 39.130 15.69 0.00 0.00 2.45
753 755 3.758023 CTGTGCACCAAAACTGGATATGA 59.242 43.478 15.69 0.00 0.00 2.15
754 756 3.507233 ACTGTGCACCAAAACTGGATATG 59.493 43.478 15.69 0.00 0.00 1.78
755 757 3.507233 CACTGTGCACCAAAACTGGATAT 59.493 43.478 15.69 0.00 0.00 1.63
756 758 2.884012 CACTGTGCACCAAAACTGGATA 59.116 45.455 15.69 0.00 0.00 2.59
757 759 1.682854 CACTGTGCACCAAAACTGGAT 59.317 47.619 15.69 0.00 0.00 3.41
758 760 1.102154 CACTGTGCACCAAAACTGGA 58.898 50.000 15.69 0.00 0.00 3.86
759 761 1.102154 TCACTGTGCACCAAAACTGG 58.898 50.000 15.69 0.00 0.00 4.00
760 762 1.472082 TGTCACTGTGCACCAAAACTG 59.528 47.619 15.69 0.48 0.00 3.16
761 763 1.472480 GTGTCACTGTGCACCAAAACT 59.528 47.619 15.69 0.00 0.00 2.66
762 764 1.793714 CGTGTCACTGTGCACCAAAAC 60.794 52.381 15.69 8.39 32.40 2.43
763 765 0.449786 CGTGTCACTGTGCACCAAAA 59.550 50.000 15.69 0.00 32.40 2.44
764 766 1.987704 GCGTGTCACTGTGCACCAAA 61.988 55.000 15.69 0.00 32.40 3.28
765 767 2.468670 GCGTGTCACTGTGCACCAA 61.469 57.895 15.69 0.00 32.40 3.67
766 768 2.867793 AAGCGTGTCACTGTGCACCA 62.868 55.000 15.69 0.85 32.40 4.17
767 769 1.714899 AAAGCGTGTCACTGTGCACC 61.715 55.000 15.69 16.17 32.40 5.01
768 770 0.589729 CAAAGCGTGTCACTGTGCAC 60.590 55.000 10.75 10.75 0.00 4.57
769 771 1.720894 CAAAGCGTGTCACTGTGCA 59.279 52.632 2.12 1.85 0.00 4.57
770 772 1.655350 GCAAAGCGTGTCACTGTGC 60.655 57.895 2.12 0.00 40.97 4.57
771 773 0.378257 AAGCAAAGCGTGTCACTGTG 59.622 50.000 0.17 0.17 0.00 3.66
772 774 1.094785 AAAGCAAAGCGTGTCACTGT 58.905 45.000 0.65 0.00 0.00 3.55
773 775 3.542712 ATAAAGCAAAGCGTGTCACTG 57.457 42.857 0.65 0.00 0.00 3.66
774 776 4.275936 AGAAATAAAGCAAAGCGTGTCACT 59.724 37.500 0.65 0.00 0.00 3.41
775 777 4.537015 AGAAATAAAGCAAAGCGTGTCAC 58.463 39.130 0.00 0.00 0.00 3.67
776 778 4.515191 AGAGAAATAAAGCAAAGCGTGTCA 59.485 37.500 0.00 0.00 0.00 3.58
777 779 5.035784 AGAGAAATAAAGCAAAGCGTGTC 57.964 39.130 0.00 0.00 0.00 3.67
778 780 4.083271 GGAGAGAAATAAAGCAAAGCGTGT 60.083 41.667 0.00 0.00 0.00 4.49
779 781 4.083324 TGGAGAGAAATAAAGCAAAGCGTG 60.083 41.667 0.00 0.00 0.00 5.34
780 782 4.072131 TGGAGAGAAATAAAGCAAAGCGT 58.928 39.130 0.00 0.00 0.00 5.07
781 783 4.685169 TGGAGAGAAATAAAGCAAAGCG 57.315 40.909 0.00 0.00 0.00 4.68
782 784 8.246871 ACTTTATGGAGAGAAATAAAGCAAAGC 58.753 33.333 12.71 0.00 44.66 3.51
783 785 9.565213 CACTTTATGGAGAGAAATAAAGCAAAG 57.435 33.333 12.71 0.00 44.66 2.77
784 786 9.295825 TCACTTTATGGAGAGAAATAAAGCAAA 57.704 29.630 12.71 0.38 44.66 3.68
785 787 8.730680 GTCACTTTATGGAGAGAAATAAAGCAA 58.269 33.333 12.71 2.25 44.66 3.91
786 788 7.064609 CGTCACTTTATGGAGAGAAATAAAGCA 59.935 37.037 12.71 1.20 44.66 3.91
787 789 7.277981 TCGTCACTTTATGGAGAGAAATAAAGC 59.722 37.037 12.71 0.60 44.66 3.51
788 790 8.703604 TCGTCACTTTATGGAGAGAAATAAAG 57.296 34.615 11.66 11.66 45.57 1.85
789 791 9.496873 TTTCGTCACTTTATGGAGAGAAATAAA 57.503 29.630 0.00 0.00 0.00 1.40
790 792 8.932791 GTTTCGTCACTTTATGGAGAGAAATAA 58.067 33.333 0.00 0.00 0.00 1.40
791 793 8.092068 TGTTTCGTCACTTTATGGAGAGAAATA 58.908 33.333 0.00 0.00 0.00 1.40
792 794 6.934645 TGTTTCGTCACTTTATGGAGAGAAAT 59.065 34.615 0.00 0.00 0.00 2.17
793 795 6.285224 TGTTTCGTCACTTTATGGAGAGAAA 58.715 36.000 0.00 0.00 0.00 2.52
794 796 5.849510 TGTTTCGTCACTTTATGGAGAGAA 58.150 37.500 0.00 0.00 0.00 2.87
795 797 5.462530 TGTTTCGTCACTTTATGGAGAGA 57.537 39.130 0.00 0.00 0.00 3.10
796 798 6.727824 AATGTTTCGTCACTTTATGGAGAG 57.272 37.500 0.00 0.00 0.00 3.20
797 799 9.878667 TTATAATGTTTCGTCACTTTATGGAGA 57.121 29.630 13.33 0.00 32.25 3.71
799 801 9.661563 ACTTATAATGTTTCGTCACTTTATGGA 57.338 29.630 13.33 6.06 32.25 3.41
800 802 9.702726 CACTTATAATGTTTCGTCACTTTATGG 57.297 33.333 13.33 10.19 32.25 2.74
801 803 9.702726 CCACTTATAATGTTTCGTCACTTTATG 57.297 33.333 13.33 5.48 32.25 1.90
802 804 9.661563 TCCACTTATAATGTTTCGTCACTTTAT 57.338 29.630 10.47 10.47 33.67 1.40
803 805 8.928733 GTCCACTTATAATGTTTCGTCACTTTA 58.071 33.333 0.00 0.00 0.00 1.85
804 806 7.660208 AGTCCACTTATAATGTTTCGTCACTTT 59.340 33.333 0.00 0.00 0.00 2.66
805 807 7.159372 AGTCCACTTATAATGTTTCGTCACTT 58.841 34.615 0.00 0.00 0.00 3.16
806 808 6.698380 AGTCCACTTATAATGTTTCGTCACT 58.302 36.000 0.00 0.00 0.00 3.41
807 809 6.963049 AGTCCACTTATAATGTTTCGTCAC 57.037 37.500 0.00 0.00 0.00 3.67
808 810 6.592607 GGAAGTCCACTTATAATGTTTCGTCA 59.407 38.462 0.00 0.00 36.11 4.35
809 811 6.592607 TGGAAGTCCACTTATAATGTTTCGTC 59.407 38.462 0.00 0.00 42.01 4.20
810 812 6.469410 TGGAAGTCCACTTATAATGTTTCGT 58.531 36.000 0.00 0.00 42.01 3.85
811 813 6.978343 TGGAAGTCCACTTATAATGTTTCG 57.022 37.500 0.00 0.00 42.01 3.46
839 841 3.165071 CCCATCTGCCCAGTAACTTTTT 58.835 45.455 0.00 0.00 0.00 1.94
840 842 2.807676 CCCATCTGCCCAGTAACTTTT 58.192 47.619 0.00 0.00 0.00 2.27
841 843 1.616994 GCCCATCTGCCCAGTAACTTT 60.617 52.381 0.00 0.00 0.00 2.66
842 844 0.034089 GCCCATCTGCCCAGTAACTT 60.034 55.000 0.00 0.00 0.00 2.66
843 845 1.609783 GCCCATCTGCCCAGTAACT 59.390 57.895 0.00 0.00 0.00 2.24
844 846 1.453928 GGCCCATCTGCCCAGTAAC 60.454 63.158 0.00 0.00 46.11 2.50
864 866 3.555168 CCCGTAATCACATTCTAGCCTCC 60.555 52.174 0.00 0.00 0.00 4.30
871 873 4.837093 TTCTTCCCCGTAATCACATTCT 57.163 40.909 0.00 0.00 0.00 2.40
886 888 1.606601 GGCTGGGTGGGTTTCTTCC 60.607 63.158 0.00 0.00 0.00 3.46
917 919 1.135460 GTCGAACCAACTCCGGTCTAG 60.135 57.143 0.00 0.00 38.76 2.43
1295 1325 0.804989 CGGGATGTGCACCTTCTTTC 59.195 55.000 15.69 1.70 0.00 2.62
1307 1337 3.461773 CGAGAGGCCACGGGATGT 61.462 66.667 5.01 0.00 0.00 3.06
1317 1347 3.934962 GGGGGAGATGCGAGAGGC 61.935 72.222 0.00 0.00 43.96 4.70
1368 1398 8.268850 TCTAAATAAGTTGCAGGAATTGAGAC 57.731 34.615 0.00 0.00 0.00 3.36
1407 1437 7.646314 CAGGTTTTGAATCAGGATCACATATC 58.354 38.462 0.00 0.00 0.00 1.63
1412 1442 3.507233 TGCAGGTTTTGAATCAGGATCAC 59.493 43.478 0.00 0.00 0.00 3.06
1612 1642 6.699575 ATCACAGCATATTCTGGGTTTAAC 57.300 37.500 4.48 0.00 38.58 2.01
1646 1676 0.756903 GCCCTGCTAGTAATCGGGAA 59.243 55.000 7.70 0.00 37.05 3.97
1648 1678 0.687354 ATGCCCTGCTAGTAATCGGG 59.313 55.000 0.00 0.00 37.97 5.14
1649 1679 1.070758 ACATGCCCTGCTAGTAATCGG 59.929 52.381 0.00 0.00 0.00 4.18
1650 1680 2.533266 ACATGCCCTGCTAGTAATCG 57.467 50.000 0.00 0.00 0.00 3.34
1652 1682 3.282021 CACAACATGCCCTGCTAGTAAT 58.718 45.455 0.00 0.00 0.00 1.89
1682 1725 9.147732 TCAGCTAACCCAATATATCGATATCAT 57.852 33.333 20.95 8.88 0.00 2.45
1800 1843 6.792250 CGACACAGATGATAAAACAGACAAAC 59.208 38.462 0.00 0.00 0.00 2.93
1947 1991 6.524734 TGATATAATCACAATCGCAGAAGGT 58.475 36.000 0.00 0.00 35.06 3.50
1973 2017 9.836864 AGTTGAAATACAGCATGATACTATCAA 57.163 29.630 0.00 0.00 43.50 2.57
1981 2025 8.040727 TGTACTACAGTTGAAATACAGCATGAT 58.959 33.333 0.00 0.00 39.69 2.45
1988 2032 8.719560 TGTTTGTGTACTACAGTTGAAATACA 57.280 30.769 0.00 0.00 41.10 2.29
1997 2041 5.236478 GTGCTTCATGTTTGTGTACTACAGT 59.764 40.000 0.00 0.00 41.10 3.55
2062 2106 5.306532 TGAAAGTAGTAACTAGAGGCACG 57.693 43.478 0.00 0.00 33.75 5.34
2105 2154 0.546598 ATGGGGAAGGGACGATGTTC 59.453 55.000 0.00 0.00 0.00 3.18
2111 2160 2.124570 CTGCATGGGGAAGGGACG 60.125 66.667 0.00 0.00 0.00 4.79
2119 2168 0.458669 GAGCATCAAACTGCATGGGG 59.541 55.000 0.00 0.00 44.77 4.96
2120 2169 1.471119 AGAGCATCAAACTGCATGGG 58.529 50.000 0.00 0.00 44.77 4.00
2149 2198 4.464244 TCCTCTTCAGATGACAGTGGTAAG 59.536 45.833 0.00 0.00 0.00 2.34
2210 2259 5.163540 ACTCTGATACTGATACCGTGAAACC 60.164 44.000 0.00 0.00 0.00 3.27
2272 2321 5.068198 CCAGCTGCATAATTCCTTGTGTAAT 59.932 40.000 8.66 0.00 0.00 1.89
2421 2473 7.822334 TGTTACAATCTTGTATAGTTGGGAGTG 59.178 37.037 3.76 0.00 42.66 3.51
2425 2477 8.506168 ACATGTTACAATCTTGTATAGTTGGG 57.494 34.615 3.76 0.00 42.66 4.12
2434 2486 9.709495 ATTGCAAATTACATGTTACAATCTTGT 57.291 25.926 2.30 0.69 44.86 3.16
2460 2512 9.851686 ATCCAAGTGAAAATAGCAGATGTATAA 57.148 29.630 0.00 0.00 0.00 0.98
2505 2557 7.721402 ACTGAAACATGTTAAACTGCCATTAA 58.279 30.769 12.39 0.00 0.00 1.40
2701 2756 9.832445 AAATAAGTACCATGAGACGTCATAAAT 57.168 29.630 19.50 2.39 41.85 1.40
2707 2762 7.977853 TCCTAAAAATAAGTACCATGAGACGTC 59.022 37.037 7.70 7.70 0.00 4.34
2811 2866 4.888326 TTGCCAAGACAAGCCATAAAAT 57.112 36.364 0.00 0.00 0.00 1.82
2878 2936 6.624423 AGTTTACATGATTTGATTGCAGGAC 58.376 36.000 0.00 0.00 0.00 3.85
3063 3121 6.682861 GCTTCATTAAACAACACTTCAACCCT 60.683 38.462 0.00 0.00 0.00 4.34
3140 3198 7.765360 ACCATCCAAACTTACATGCATAAATTG 59.235 33.333 0.00 0.20 0.00 2.32
3141 3199 7.850193 ACCATCCAAACTTACATGCATAAATT 58.150 30.769 0.00 0.00 0.00 1.82
3142 3200 7.422465 ACCATCCAAACTTACATGCATAAAT 57.578 32.000 0.00 0.00 0.00 1.40
3143 3201 6.849085 ACCATCCAAACTTACATGCATAAA 57.151 33.333 0.00 0.00 0.00 1.40
3291 3359 7.384477 AGCCGTACCTTCAATATTTAGGATAC 58.616 38.462 16.70 13.56 33.21 2.24
3312 3380 2.403252 ATGGGAGTCAACTAAAGCCG 57.597 50.000 0.00 0.00 0.00 5.52
3337 3405 3.751175 TCGGCTACCTGAAATGAAACAAG 59.249 43.478 0.00 0.00 0.00 3.16
3342 3410 2.356135 GCTTCGGCTACCTGAAATGAA 58.644 47.619 0.00 0.00 38.08 2.57
3343 3411 2.024176 GCTTCGGCTACCTGAAATGA 57.976 50.000 0.00 0.00 38.08 2.57
3361 3429 1.672356 ATGTCTCCGCCAACACAGC 60.672 57.895 0.00 0.00 0.00 4.40
3371 3439 2.358957 TGCTGGAAATTCATGTCTCCG 58.641 47.619 0.00 0.00 0.00 4.63
3418 3486 6.183309 GGCTTGTACAAGACATTTTAGAGG 57.817 41.667 34.43 8.78 45.69 3.69
3503 3571 6.590292 ACAACATTACTGTCGACAAATCTAGG 59.410 38.462 20.49 8.42 33.36 3.02
3654 3724 3.938963 TCATTTTAGTTGCCCTAGCGAAG 59.061 43.478 0.00 0.00 44.31 3.79
3658 3730 7.940850 TGAATTATCATTTTAGTTGCCCTAGC 58.059 34.615 0.00 0.00 40.48 3.42
3697 3773 5.759059 TGAGATGTCCATCCTATGCTTTTT 58.241 37.500 3.70 0.00 38.58 1.94
3698 3774 5.378230 TGAGATGTCCATCCTATGCTTTT 57.622 39.130 3.70 0.00 38.58 2.27
3723 3799 5.181245 GGCATAGCTTCAGTGTTTGAGTTAA 59.819 40.000 0.00 0.00 37.07 2.01
3725 3801 3.503748 GGCATAGCTTCAGTGTTTGAGTT 59.496 43.478 0.00 0.00 37.07 3.01
3768 3845 5.248870 AGTGTGTTTCTTTTCACCATCAC 57.751 39.130 0.00 0.00 34.14 3.06
3781 3858 7.229907 TGTCCCCTAGAAAATTTAGTGTGTTTC 59.770 37.037 0.00 0.00 0.00 2.78
3794 3871 7.996644 GGATATATGTGTTTGTCCCCTAGAAAA 59.003 37.037 0.00 0.00 0.00 2.29
3852 3929 2.122954 GAGTCCAGTCCAGGGGGT 59.877 66.667 0.00 0.00 34.93 4.95
3937 4025 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3938 4026 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3939 4027 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3940 4028 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3941 4029 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3942 4030 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3943 4031 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3944 4032 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3945 4033 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3946 4034 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3947 4035 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3948 4036 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3949 4037 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3950 4038 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3951 4039 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3952 4040 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3953 4041 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3954 4042 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3955 4043 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
3956 4044 6.418057 AATCTCTCTCTCTCTCTCTCTCTC 57.582 45.833 0.00 0.00 0.00 3.20
3957 4045 6.385176 TCAAATCTCTCTCTCTCTCTCTCTCT 59.615 42.308 0.00 0.00 0.00 3.10
3958 4046 6.586344 TCAAATCTCTCTCTCTCTCTCTCTC 58.414 44.000 0.00 0.00 0.00 3.20
3959 4047 6.385176 TCTCAAATCTCTCTCTCTCTCTCTCT 59.615 42.308 0.00 0.00 0.00 3.10
3960 4048 6.586344 TCTCAAATCTCTCTCTCTCTCTCTC 58.414 44.000 0.00 0.00 0.00 3.20
3961 4049 6.566079 TCTCAAATCTCTCTCTCTCTCTCT 57.434 41.667 0.00 0.00 0.00 3.10
3962 4050 7.475840 GTTTCTCAAATCTCTCTCTCTCTCTC 58.524 42.308 0.00 0.00 0.00 3.20
3963 4051 6.094048 CGTTTCTCAAATCTCTCTCTCTCTCT 59.906 42.308 0.00 0.00 0.00 3.10
3964 4052 6.258160 CGTTTCTCAAATCTCTCTCTCTCTC 58.742 44.000 0.00 0.00 0.00 3.20
3965 4053 5.125417 CCGTTTCTCAAATCTCTCTCTCTCT 59.875 44.000 0.00 0.00 0.00 3.10
3966 4054 5.339990 CCGTTTCTCAAATCTCTCTCTCTC 58.660 45.833 0.00 0.00 0.00 3.20
3967 4055 4.381505 GCCGTTTCTCAAATCTCTCTCTCT 60.382 45.833 0.00 0.00 0.00 3.10
3968 4056 3.862845 GCCGTTTCTCAAATCTCTCTCTC 59.137 47.826 0.00 0.00 0.00 3.20
4018 4107 1.202651 ACCCCAGTAAGCATACATCGC 60.203 52.381 1.44 0.00 34.29 4.58
4019 4108 2.755650 GACCCCAGTAAGCATACATCG 58.244 52.381 1.44 0.00 34.29 3.84
4020 4109 2.548067 CCGACCCCAGTAAGCATACATC 60.548 54.545 1.44 0.00 34.29 3.06
4021 4110 1.416401 CCGACCCCAGTAAGCATACAT 59.584 52.381 1.44 0.00 34.29 2.29
4022 4111 0.828022 CCGACCCCAGTAAGCATACA 59.172 55.000 1.44 0.00 34.29 2.29
4023 4112 0.828677 ACCGACCCCAGTAAGCATAC 59.171 55.000 0.00 0.00 0.00 2.39
4024 4113 0.828022 CACCGACCCCAGTAAGCATA 59.172 55.000 0.00 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.