Multiple sequence alignment - TraesCS7D01G305000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G305000 chr7D 100.000 4700 0 0 1 4700 386650198 386645499 0.000000e+00 8680.0
1 TraesCS7D01G305000 chr7D 79.139 302 57 4 165 465 603903394 603903098 2.220000e-48 204.0
2 TraesCS7D01G305000 chr7B 93.261 4437 181 40 1 4376 381479270 381474891 0.000000e+00 6429.0
3 TraesCS7D01G305000 chr7B 86.391 338 33 8 4376 4700 381474830 381474493 1.610000e-94 357.0
4 TraesCS7D01G305000 chr7B 94.118 51 2 1 4375 4425 709252598 709252549 5.040000e-10 76.8
5 TraesCS7D01G305000 chr7A 94.702 3662 99 19 421 4028 435972823 435969203 0.000000e+00 5600.0
6 TraesCS7D01G305000 chr7A 90.923 639 45 6 4012 4637 435960848 435960210 0.000000e+00 846.0
7 TraesCS7D01G305000 chr7A 91.991 437 21 2 1 429 435975418 435974988 6.730000e-168 601.0
8 TraesCS7D01G305000 chr7A 82.524 309 51 3 160 467 696678070 696678376 7.750000e-68 268.0
9 TraesCS7D01G305000 chr7A 95.238 42 2 0 4646 4687 435957108 435957067 3.040000e-07 67.6
10 TraesCS7D01G305000 chr7A 100.000 29 0 0 4672 4700 435955760 435955732 2.000000e-03 54.7
11 TraesCS7D01G305000 chr5D 96.226 53 0 1 4370 4422 436973139 436973089 8.380000e-13 86.1
12 TraesCS7D01G305000 chr5D 95.833 48 2 0 4379 4426 192265920 192265873 1.400000e-10 78.7
13 TraesCS7D01G305000 chr4B 97.917 48 1 0 4376 4423 32490038 32489991 3.010000e-12 84.2
14 TraesCS7D01G305000 chr3D 100.000 45 0 0 4379 4423 445019079 445019035 3.010000e-12 84.2
15 TraesCS7D01G305000 chr3B 94.444 54 1 1 4370 4423 704578468 704578417 1.080000e-11 82.4
16 TraesCS7D01G305000 chr5B 95.833 48 2 0 4379 4426 196466940 196466893 1.400000e-10 78.7
17 TraesCS7D01G305000 chr5A 95.833 48 2 0 4379 4426 230068447 230068400 1.400000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G305000 chr7D 386645499 386650198 4699 True 8680.000000 8680 100.0000 1 4700 1 chr7D.!!$R1 4699
1 TraesCS7D01G305000 chr7B 381474493 381479270 4777 True 3393.000000 6429 89.8260 1 4700 2 chr7B.!!$R2 4699
2 TraesCS7D01G305000 chr7A 435969203 435975418 6215 True 3100.500000 5600 93.3465 1 4028 2 chr7A.!!$R2 4027
3 TraesCS7D01G305000 chr7A 435955732 435960848 5116 True 322.766667 846 95.3870 4012 4700 3 chr7A.!!$R1 688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 214 0.112606 TCCCTCGTGAAGTCCTCTGT 59.887 55.0 0.00 0.0 0.00 3.41 F
979 3219 0.471211 TCGACCTCCACTTTCCCACT 60.471 55.0 0.00 0.0 0.00 4.00 F
1846 4110 0.178861 AGGATTCCACCAGGTCAGGT 60.179 55.0 5.29 0.0 44.48 4.00 F
2619 4901 0.810648 TAAAGCTTCGGGCATTGCAG 59.189 50.0 11.39 4.0 44.79 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1587 3851 0.169672 GCTCGTGCCAGTCGTACTTA 59.830 55.0 0.0 0.0 0.00 2.24 R
2660 4942 0.883370 TTCTGCTGCTGCTCACACTG 60.883 55.0 17.0 0.0 40.48 3.66 R
2966 5255 1.123077 CCCATGAAGGTCGATCTGGA 58.877 55.0 0.0 0.0 34.66 3.86 R
4410 6766 0.252330 GGGGGCTATCTACTCCCTCC 60.252 65.0 0.0 0.0 39.95 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 2.975536 CGGACTTCGCCCCTACAA 59.024 61.111 0.00 0.00 0.00 2.41
88 89 0.330267 CCCCTACAACCGACCCAAAT 59.670 55.000 0.00 0.00 0.00 2.32
149 150 0.523072 CGTTGGAGTTGGCCTCAATG 59.477 55.000 3.32 3.03 42.40 2.82
169 170 0.609131 CCCAACATCACCAGTGGTCC 60.609 60.000 13.31 0.00 31.02 4.46
213 214 0.112606 TCCCTCGTGAAGTCCTCTGT 59.887 55.000 0.00 0.00 0.00 3.41
357 358 1.202582 GTCTCCGCAACTTCAGAGCTA 59.797 52.381 0.00 0.00 0.00 3.32
482 2664 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
483 2665 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
484 2666 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
485 2667 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
486 2668 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
487 2669 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
488 2670 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
489 2671 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
490 2672 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
491 2673 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
492 2674 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
493 2675 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
494 2676 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
495 2677 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
496 2678 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
497 2679 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
498 2680 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
499 2681 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
500 2682 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
501 2683 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
502 2684 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
503 2685 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
504 2686 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
505 2687 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
541 2749 3.308188 CCGACCAGGGAGGAAAACTATTT 60.308 47.826 0.00 0.00 41.22 1.40
546 2754 3.195610 CAGGGAGGAAAACTATTTTGGCC 59.804 47.826 0.00 0.00 31.94 5.36
557 2765 6.530019 AACTATTTTGGCCTGTTGGATTAG 57.470 37.500 3.32 0.00 34.57 1.73
613 2821 2.610859 AGGCAAGTCCCATCCCGT 60.611 61.111 0.00 0.00 34.51 5.28
637 2845 2.192664 ATGTCCCGTTGTAATGCACA 57.807 45.000 0.00 0.00 34.51 4.57
661 2897 6.603997 CAGGCTTCTTACTAGTTAGAGGAAGA 59.396 42.308 21.19 11.32 33.45 2.87
700 2937 8.789825 TTATTTTTCTTGGCGTACCTATTACA 57.210 30.769 0.00 0.00 36.63 2.41
713 2950 3.118884 ACCTATTACACGATTCGCCAGTT 60.119 43.478 5.86 0.00 0.00 3.16
743 2980 8.940397 AAAATTATGGCCTGCTAATATAGTGT 57.060 30.769 3.32 0.00 0.00 3.55
796 3033 4.529377 TCCTGTCCTTTATCTACACCGTTT 59.471 41.667 0.00 0.00 0.00 3.60
979 3219 0.471211 TCGACCTCCACTTTCCCACT 60.471 55.000 0.00 0.00 0.00 4.00
1587 3851 1.390125 CCTCCTCCACACCCTCTCT 59.610 63.158 0.00 0.00 0.00 3.10
1842 4106 1.077429 GCCAGGATTCCACCAGGTC 60.077 63.158 5.29 0.00 38.59 3.85
1843 4107 1.852157 GCCAGGATTCCACCAGGTCA 61.852 60.000 5.29 0.00 38.59 4.02
1844 4108 0.254178 CCAGGATTCCACCAGGTCAG 59.746 60.000 5.29 0.00 32.87 3.51
1845 4109 0.254178 CAGGATTCCACCAGGTCAGG 59.746 60.000 5.29 0.00 35.89 3.86
1846 4110 0.178861 AGGATTCCACCAGGTCAGGT 60.179 55.000 5.29 0.00 44.48 4.00
1947 4211 5.065731 GGAATGTTTCTACAGAGATTGCTGG 59.934 44.000 0.00 0.00 40.20 4.85
2100 4382 6.349300 TGTTCTAGATAATTGAAGTCTGCCC 58.651 40.000 0.00 0.00 0.00 5.36
2390 4672 7.422399 TGCTTCTAAAGAAAATGTACAACCAC 58.578 34.615 0.00 0.00 33.07 4.16
2392 4674 7.591426 GCTTCTAAAGAAAATGTACAACCACAG 59.409 37.037 0.00 0.00 33.07 3.66
2619 4901 0.810648 TAAAGCTTCGGGCATTGCAG 59.189 50.000 11.39 4.00 44.79 4.41
2728 5010 4.165565 TCCATCTCTTTCTGCTCCATTGAT 59.834 41.667 0.00 0.00 0.00 2.57
2807 5090 6.295575 CCAATAGAGGCCTCCTTTATCTGTAG 60.296 46.154 29.54 8.91 30.94 2.74
2919 5208 6.237808 GGTTTTACTTGAAATTGTGCACACAG 60.238 38.462 21.56 10.92 42.94 3.66
2966 5255 5.421693 TGTGGGCTGTTGCATTTTATTATCT 59.578 36.000 0.00 0.00 41.91 1.98
3525 5814 7.210873 GGAAGGTATGACTAGGATTAGTGTTG 58.789 42.308 0.00 0.00 40.21 3.33
3529 5818 6.761714 GGTATGACTAGGATTAGTGTTGTTGG 59.238 42.308 0.00 0.00 40.21 3.77
3531 5820 4.841813 TGACTAGGATTAGTGTTGTTGGGA 59.158 41.667 0.00 0.00 40.21 4.37
3559 5848 5.119125 GTGGCTTAAACTGCATTTTTAGCTG 59.881 40.000 28.16 12.94 37.13 4.24
3638 5927 6.644347 ACATCGTACCTTCTTCATCTGAAAT 58.356 36.000 0.00 0.00 33.07 2.17
3648 5937 5.188434 TCTTCATCTGAAATCACCATGGAC 58.812 41.667 21.47 3.03 33.07 4.02
3654 5943 4.701651 TCTGAAATCACCATGGACATTGAC 59.298 41.667 21.47 12.96 0.00 3.18
3674 5963 5.011586 TGACATCAGGAAATGCAAAGATGA 58.988 37.500 15.47 7.21 37.05 2.92
4193 6487 4.393680 GGGACGCTTCACACAATTTACATA 59.606 41.667 0.00 0.00 0.00 2.29
4200 6494 9.031360 CGCTTCACACAATTTACATAGTATAGT 57.969 33.333 0.00 0.00 0.00 2.12
4212 6506 9.982651 TTTACATAGTATAGTGAGCCATTCTTC 57.017 33.333 0.00 0.00 0.00 2.87
4372 6667 1.520666 GCGGCAGCTAGGGTTCTTA 59.479 57.895 0.00 0.00 41.01 2.10
4426 6782 1.536940 GACGGAGGGAGTAGATAGCC 58.463 60.000 0.00 0.00 0.00 3.93
4433 6789 2.089350 AGGGAGTAGATAGCCCCCATTT 60.089 50.000 0.00 0.00 43.08 2.32
4469 6826 1.385528 TTATACTCCAGCGAGCGACA 58.614 50.000 0.00 0.00 40.03 4.35
4484 6841 2.431942 ACACCGACGGCGATCAAC 60.432 61.111 15.16 0.00 40.82 3.18
4485 6842 2.431771 CACCGACGGCGATCAACA 60.432 61.111 15.16 0.00 40.82 3.33
4489 6846 0.179225 CCGACGGCGATCAACAAAAG 60.179 55.000 15.16 0.00 40.82 2.27
4508 6877 2.320781 AGCAGGTGACAACTACAGAGT 58.679 47.619 0.00 0.00 37.59 3.24
4562 6931 2.593956 GGCCGACCACTCCCTTTCT 61.594 63.158 0.00 0.00 35.26 2.52
4567 6936 0.680061 GACCACTCCCTTTCTCGTGT 59.320 55.000 0.00 0.00 0.00 4.49
4568 6937 0.393077 ACCACTCCCTTTCTCGTGTG 59.607 55.000 0.00 0.00 0.00 3.82
4599 6968 3.243737 TGCTCATAAACGATGCGGTATCT 60.244 43.478 4.58 0.00 35.29 1.98
4601 6970 4.299155 CTCATAAACGATGCGGTATCTGT 58.701 43.478 4.58 1.89 35.29 3.41
4617 6986 4.574674 ATCTGTAGATTTTGGCTGTCCA 57.425 40.909 0.00 0.00 41.55 4.02
4634 7003 6.456988 GGCTGTCCATTAACTGAACTAATTCG 60.457 42.308 0.00 0.00 37.69 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 3.352648 CTTTATGTCCATTTGGGTCGGT 58.647 45.455 0.00 0.00 38.11 4.69
88 89 3.128589 GGAATTGCTTCGCTTTATGTCCA 59.871 43.478 0.00 0.00 31.75 4.02
149 150 1.228552 ACCACTGGTGATGTTGGGC 60.229 57.895 0.00 0.00 32.98 5.36
169 170 2.818274 GCAACGTTCCTAGGGGCG 60.818 66.667 19.43 19.43 0.00 6.13
288 289 1.228398 TTGCGACCCAAGATTGCCA 60.228 52.632 0.00 0.00 0.00 4.92
482 2664 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
483 2665 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
484 2666 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
485 2667 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
486 2668 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
487 2669 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
488 2670 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
489 2671 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
490 2672 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
491 2673 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
492 2674 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
493 2675 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
494 2676 5.127845 TCAACTCTCTCTCTCTCTCTCTCTC 59.872 48.000 0.00 0.00 0.00 3.20
495 2677 5.026121 TCAACTCTCTCTCTCTCTCTCTCT 58.974 45.833 0.00 0.00 0.00 3.10
496 2678 5.112686 GTCAACTCTCTCTCTCTCTCTCTC 58.887 50.000 0.00 0.00 0.00 3.20
497 2679 4.080863 GGTCAACTCTCTCTCTCTCTCTCT 60.081 50.000 0.00 0.00 0.00 3.10
498 2680 4.192317 GGTCAACTCTCTCTCTCTCTCTC 58.808 52.174 0.00 0.00 0.00 3.20
499 2681 3.369471 CGGTCAACTCTCTCTCTCTCTCT 60.369 52.174 0.00 0.00 0.00 3.10
500 2682 2.936498 CGGTCAACTCTCTCTCTCTCTC 59.064 54.545 0.00 0.00 0.00 3.20
501 2683 2.569853 TCGGTCAACTCTCTCTCTCTCT 59.430 50.000 0.00 0.00 0.00 3.10
502 2684 2.676342 GTCGGTCAACTCTCTCTCTCTC 59.324 54.545 0.00 0.00 0.00 3.20
503 2685 2.617021 GGTCGGTCAACTCTCTCTCTCT 60.617 54.545 0.00 0.00 0.00 3.10
504 2686 1.741145 GGTCGGTCAACTCTCTCTCTC 59.259 57.143 0.00 0.00 0.00 3.20
505 2687 1.074084 TGGTCGGTCAACTCTCTCTCT 59.926 52.381 0.00 0.00 0.00 3.10
541 2749 4.671831 TCATTTCTAATCCAACAGGCCAA 58.328 39.130 5.01 0.00 0.00 4.52
546 2754 3.941483 ACCGCTCATTTCTAATCCAACAG 59.059 43.478 0.00 0.00 0.00 3.16
557 2765 1.521681 CTCCCCGACCGCTCATTTC 60.522 63.158 0.00 0.00 0.00 2.17
584 2792 2.284190 GACTTGCCTGCTCCTCAATAC 58.716 52.381 0.00 0.00 0.00 1.89
613 2821 4.812091 GTGCATTACAACGGGACATACATA 59.188 41.667 0.00 0.00 0.00 2.29
637 2845 6.733509 TCTTCCTCTAACTAGTAAGAAGCCT 58.266 40.000 0.00 0.00 31.39 4.58
671 2907 8.747538 ATAGGTACGCCAAGAAAAATAAGAAT 57.252 30.769 0.00 0.00 37.19 2.40
771 3008 4.715297 ACGGTGTAGATAAAGGACAGGAAT 59.285 41.667 0.00 0.00 0.00 3.01
796 3033 6.073447 TGACAGCCAGAGGGAAAATATTAA 57.927 37.500 0.00 0.00 35.59 1.40
1545 3809 2.915659 AGGACGAAGGCGGTGTCA 60.916 61.111 8.00 0.00 43.17 3.58
1587 3851 0.169672 GCTCGTGCCAGTCGTACTTA 59.830 55.000 0.00 0.00 0.00 2.24
1933 4197 4.842531 TGATTTCCCAGCAATCTCTGTA 57.157 40.909 0.00 0.00 32.63 2.74
1947 4211 6.863126 CCAATAGAAACACACAGTTGATTTCC 59.137 38.462 0.00 0.00 41.19 3.13
2100 4382 3.253921 TGAACAGCAACATGACAATCCTG 59.746 43.478 0.00 0.00 0.00 3.86
2194 4476 1.139058 CACCAATAGTTCCCCTCGGAG 59.861 57.143 0.00 0.00 40.10 4.63
2195 4477 1.200519 CACCAATAGTTCCCCTCGGA 58.799 55.000 0.00 0.00 35.88 4.55
2196 4478 1.139058 CTCACCAATAGTTCCCCTCGG 59.861 57.143 0.00 0.00 0.00 4.63
2197 4479 2.101582 CTCTCACCAATAGTTCCCCTCG 59.898 54.545 0.00 0.00 0.00 4.63
2301 4583 5.456186 GGGCATGGTAGAGGATAAGCTTTTA 60.456 44.000 3.20 0.00 0.00 1.52
2586 4868 5.226396 CGAAGCTTTAGGATATCTGACAGG 58.774 45.833 0.00 0.00 0.00 4.00
2597 4879 1.750193 CAATGCCCGAAGCTTTAGGA 58.250 50.000 19.69 5.86 44.23 2.94
2619 4901 3.916761 TGCTTTTCCAATGCATCAAGAC 58.083 40.909 0.00 0.00 36.74 3.01
2660 4942 0.883370 TTCTGCTGCTGCTCACACTG 60.883 55.000 17.00 0.00 40.48 3.66
2748 5031 3.747708 GCCCCTACATAACATTGGTCCTC 60.748 52.174 0.00 0.00 0.00 3.71
2807 5090 4.798574 CTCTAGGTTTCATTGGTGCAAAC 58.201 43.478 0.00 0.00 0.00 2.93
2919 5208 7.487189 CACATAAGTTCAGAATCATGCCTTTTC 59.513 37.037 0.00 0.00 0.00 2.29
2966 5255 1.123077 CCCATGAAGGTCGATCTGGA 58.877 55.000 0.00 0.00 34.66 3.86
3204 5493 3.473923 ACATTGCCTTTGAAAACCTGG 57.526 42.857 0.00 0.00 0.00 4.45
3525 5814 2.897326 AGTTTAAGCCACCATTCCCAAC 59.103 45.455 0.00 0.00 0.00 3.77
3529 5818 1.892474 TGCAGTTTAAGCCACCATTCC 59.108 47.619 0.00 0.00 0.00 3.01
3531 5820 4.622260 AAATGCAGTTTAAGCCACCATT 57.378 36.364 0.00 0.00 0.00 3.16
3638 5927 3.613030 CTGATGTCAATGTCCATGGTGA 58.387 45.455 12.58 5.04 0.00 4.02
3648 5937 5.716094 TCTTTGCATTTCCTGATGTCAATG 58.284 37.500 0.00 0.00 0.00 2.82
3654 5943 6.144078 TCATCATCTTTGCATTTCCTGATG 57.856 37.500 15.27 15.27 39.71 3.07
3674 5963 3.666111 CGAATGCATCGCGATCAATTCAT 60.666 43.478 32.09 22.21 45.89 2.57
3728 6017 9.109393 GAACATGCTGTAAATTATCTACTCCAA 57.891 33.333 0.00 0.00 0.00 3.53
3890 6183 8.543774 GCTAGAACACATGTCAAATACAGTATC 58.456 37.037 0.00 0.00 42.70 2.24
4171 6465 3.889196 TGTAAATTGTGTGAAGCGTCC 57.111 42.857 0.00 0.00 0.00 4.79
4193 6487 5.211973 TGGAGAAGAATGGCTCACTATACT 58.788 41.667 0.00 0.00 32.83 2.12
4200 6494 3.109928 TGAGATGGAGAAGAATGGCTCA 58.890 45.455 0.00 0.00 32.83 4.26
4212 6506 5.126869 ACTTGTGACACTAGATGAGATGGAG 59.873 44.000 21.51 0.00 0.00 3.86
4352 6647 4.096003 GAACCCTAGCTGCCGCCA 62.096 66.667 0.00 0.00 36.60 5.69
4410 6766 0.252330 GGGGGCTATCTACTCCCTCC 60.252 65.000 0.00 0.00 39.95 4.30
4433 6789 3.706600 ATAAACGAAGCCTGTAACCCA 57.293 42.857 0.00 0.00 0.00 4.51
4469 6826 0.881159 TTTTGTTGATCGCCGTCGGT 60.881 50.000 13.94 0.00 36.13 4.69
4474 6831 0.454957 CCTGCTTTTGTTGATCGCCG 60.455 55.000 0.00 0.00 0.00 6.46
4476 6833 1.266718 TCACCTGCTTTTGTTGATCGC 59.733 47.619 0.00 0.00 0.00 4.58
4477 6834 2.290367 TGTCACCTGCTTTTGTTGATCG 59.710 45.455 0.00 0.00 0.00 3.69
4478 6835 3.988379 TGTCACCTGCTTTTGTTGATC 57.012 42.857 0.00 0.00 0.00 2.92
4480 6837 3.088532 AGTTGTCACCTGCTTTTGTTGA 58.911 40.909 0.00 0.00 0.00 3.18
4481 6838 3.508744 AGTTGTCACCTGCTTTTGTTG 57.491 42.857 0.00 0.00 0.00 3.33
4484 6841 3.876914 TCTGTAGTTGTCACCTGCTTTTG 59.123 43.478 0.00 0.00 0.00 2.44
4485 6842 4.130118 CTCTGTAGTTGTCACCTGCTTTT 58.870 43.478 0.00 0.00 0.00 2.27
4489 6846 2.678324 GACTCTGTAGTTGTCACCTGC 58.322 52.381 0.00 0.00 35.56 4.85
4508 6877 2.114056 CAACGTCGTCAGTTTCTTCGA 58.886 47.619 0.00 0.00 0.00 3.71
4567 6936 2.368439 GTTTATGAGCATCTGGTGGCA 58.632 47.619 0.00 0.00 34.92 4.92
4568 6937 1.331756 CGTTTATGAGCATCTGGTGGC 59.668 52.381 0.00 0.00 34.92 5.01
4617 6986 5.579511 CGACACCCGAATTAGTTCAGTTAAT 59.420 40.000 0.00 0.00 41.76 1.40
4634 7003 1.278127 TCCCTGAAGAAATCGACACCC 59.722 52.381 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.