Multiple sequence alignment - TraesCS7D01G303700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G303700 chr7D 100.000 3338 0 0 1 3338 385395360 385398697 0.000000e+00 6165.0
1 TraesCS7D01G303700 chr7D 96.045 177 7 0 2 178 127735273 127735097 4.210000e-74 289.0
2 TraesCS7D01G303700 chr7A 94.922 3210 96 17 170 3338 433363786 433366969 0.000000e+00 4963.0
3 TraesCS7D01G303700 chr7A 92.308 39 3 0 1008 1046 410952325 410952363 4.650000e-04 56.5
4 TraesCS7D01G303700 chr7B 95.372 2485 65 6 882 3338 379730836 379733298 0.000000e+00 3906.0
5 TraesCS7D01G303700 chr7B 93.261 460 23 7 168 626 379728974 379729426 0.000000e+00 671.0
6 TraesCS7D01G303700 chr7B 88.811 143 13 1 625 764 379730524 379730666 4.430000e-39 172.0
7 TraesCS7D01G303700 chr7B 92.982 57 4 0 788 844 379730665 379730721 2.130000e-12 84.2
8 TraesCS7D01G303700 chr7B 100.000 33 0 0 841 873 379730810 379730842 1.000000e-05 62.1
9 TraesCS7D01G303700 chr2D 97.093 172 5 0 2 173 284560005 284560176 1.170000e-74 291.0
10 TraesCS7D01G303700 chr5D 96.023 176 7 0 2 177 549323152 549323327 1.520000e-73 287.0
11 TraesCS7D01G303700 chr5D 96.023 176 6 1 2 176 421982415 421982590 5.450000e-73 285.0
12 TraesCS7D01G303700 chr5D 95.455 176 8 0 1 176 23838084 23837909 7.050000e-72 281.0
13 TraesCS7D01G303700 chr3D 96.532 173 6 0 1 173 108290890 108291062 1.520000e-73 287.0
14 TraesCS7D01G303700 chr2B 96.512 172 6 0 2 173 782101539 782101368 5.450000e-73 285.0
15 TraesCS7D01G303700 chr6D 95.954 173 7 0 1 173 385659177 385659349 7.050000e-72 281.0
16 TraesCS7D01G303700 chr1B 92.746 193 12 2 2 194 640451409 640451219 9.120000e-71 278.0
17 TraesCS7D01G303700 chr5B 92.793 111 6 2 1105 1213 13384673 13384563 3.450000e-35 159.0
18 TraesCS7D01G303700 chr4D 93.396 106 7 0 1104 1209 97381256 97381361 1.240000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G303700 chr7D 385395360 385398697 3337 False 6165.00 6165 100.0000 1 3338 1 chr7D.!!$F1 3337
1 TraesCS7D01G303700 chr7A 433363786 433366969 3183 False 4963.00 4963 94.9220 170 3338 1 chr7A.!!$F2 3168
2 TraesCS7D01G303700 chr7B 379728974 379733298 4324 False 979.06 3906 94.0852 168 3338 5 chr7B.!!$F1 3170

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 365 0.179062 AGTCATCGGATGGCTCTTGC 60.179 55.0 18.95 1.6 42.62 4.01 F
881 2078 0.461516 ATACAGACGAGGCGAGACGA 60.462 55.0 0.00 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1425 2644 2.192443 CAGCCTGAGCATCCCCAG 59.808 66.667 0.0 0.0 43.56 4.45 R
2722 3970 0.179045 GCACAATCCACGGGCTCTAT 60.179 55.000 0.0 0.0 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 9.492973 AACTATATAACACAAAAACTACACCGT 57.507 29.630 0.00 0.00 0.00 4.83
49 50 9.492973 ACTATATAACACAAAAACTACACCGTT 57.507 29.630 0.00 0.00 0.00 4.44
52 53 5.373981 AACACAAAAACTACACCGTTTGA 57.626 34.783 2.25 0.00 37.20 2.69
53 54 5.373981 ACACAAAAACTACACCGTTTGAA 57.626 34.783 2.25 0.00 37.20 2.69
54 55 5.770417 ACACAAAAACTACACCGTTTGAAA 58.230 33.333 2.25 0.00 37.20 2.69
55 56 6.214399 ACACAAAAACTACACCGTTTGAAAA 58.786 32.000 2.25 0.00 37.20 2.29
56 57 6.869388 ACACAAAAACTACACCGTTTGAAAAT 59.131 30.769 2.25 0.00 37.20 1.82
57 58 8.027771 ACACAAAAACTACACCGTTTGAAAATA 58.972 29.630 2.25 0.00 37.20 1.40
58 59 8.528295 CACAAAAACTACACCGTTTGAAAATAG 58.472 33.333 2.25 0.00 37.20 1.73
59 60 8.460428 ACAAAAACTACACCGTTTGAAAATAGA 58.540 29.630 2.25 0.00 37.20 1.98
60 61 9.291664 CAAAAACTACACCGTTTGAAAATAGAA 57.708 29.630 0.00 0.00 37.20 2.10
61 62 8.845942 AAAACTACACCGTTTGAAAATAGAAC 57.154 30.769 0.00 0.00 37.20 3.01
62 63 7.556733 AACTACACCGTTTGAAAATAGAACA 57.443 32.000 0.00 0.00 0.00 3.18
63 64 7.739498 ACTACACCGTTTGAAAATAGAACAT 57.261 32.000 0.00 0.00 0.00 2.71
64 65 7.803724 ACTACACCGTTTGAAAATAGAACATC 58.196 34.615 0.00 0.00 0.00 3.06
65 66 6.877611 ACACCGTTTGAAAATAGAACATCT 57.122 33.333 0.00 0.00 0.00 2.90
66 67 6.668323 ACACCGTTTGAAAATAGAACATCTG 58.332 36.000 0.00 0.00 0.00 2.90
67 68 6.485313 ACACCGTTTGAAAATAGAACATCTGA 59.515 34.615 0.00 0.00 0.00 3.27
68 69 7.012894 ACACCGTTTGAAAATAGAACATCTGAA 59.987 33.333 0.00 0.00 0.00 3.02
69 70 7.535258 CACCGTTTGAAAATAGAACATCTGAAG 59.465 37.037 0.00 0.00 0.00 3.02
70 71 7.228706 ACCGTTTGAAAATAGAACATCTGAAGT 59.771 33.333 0.00 0.00 0.00 3.01
71 72 8.076178 CCGTTTGAAAATAGAACATCTGAAGTT 58.924 33.333 0.00 0.00 0.00 2.66
72 73 9.450807 CGTTTGAAAATAGAACATCTGAAGTTT 57.549 29.630 0.00 0.00 0.00 2.66
121 122 9.920946 ATATGACTTGTATTAGGTTGGTCAAAT 57.079 29.630 0.00 0.00 36.16 2.32
122 123 8.650143 ATGACTTGTATTAGGTTGGTCAAATT 57.350 30.769 0.00 0.00 36.16 1.82
123 124 7.881142 TGACTTGTATTAGGTTGGTCAAATTG 58.119 34.615 0.00 0.00 30.81 2.32
124 125 7.721842 TGACTTGTATTAGGTTGGTCAAATTGA 59.278 33.333 0.00 0.00 30.81 2.57
125 126 7.882179 ACTTGTATTAGGTTGGTCAAATTGAC 58.118 34.615 17.16 17.16 46.23 3.18
135 136 2.629051 GTCAAATTGACGACCTAGGGG 58.371 52.381 14.81 7.16 37.67 4.79
136 137 2.027469 GTCAAATTGACGACCTAGGGGT 60.027 50.000 14.81 10.74 42.37 4.95
137 138 3.196254 GTCAAATTGACGACCTAGGGGTA 59.804 47.826 14.81 0.00 40.90 3.69
138 139 4.916984 GTCAAATTGACGACCTAGGGGTAC 60.917 50.000 14.81 2.61 40.90 3.34
152 153 2.202518 GTACGCGCTCGCCTTGTA 60.203 61.111 5.73 2.84 39.84 2.41
153 154 1.802715 GTACGCGCTCGCCTTGTAA 60.803 57.895 5.73 0.00 39.84 2.41
154 155 1.080637 TACGCGCTCGCCTTGTAAA 60.081 52.632 5.73 0.00 39.84 2.01
155 156 1.346378 TACGCGCTCGCCTTGTAAAC 61.346 55.000 5.73 0.00 39.84 2.01
156 157 2.380410 CGCGCTCGCCTTGTAAACT 61.380 57.895 5.56 0.00 37.98 2.66
157 158 1.132640 GCGCTCGCCTTGTAAACTG 59.867 57.895 0.00 0.00 34.56 3.16
158 159 1.289109 GCGCTCGCCTTGTAAACTGA 61.289 55.000 0.00 0.00 34.56 3.41
159 160 0.716108 CGCTCGCCTTGTAAACTGAG 59.284 55.000 0.00 0.00 0.00 3.35
160 161 1.668919 CGCTCGCCTTGTAAACTGAGA 60.669 52.381 0.00 0.00 0.00 3.27
161 162 1.996191 GCTCGCCTTGTAAACTGAGAG 59.004 52.381 0.00 0.00 0.00 3.20
162 163 2.352814 GCTCGCCTTGTAAACTGAGAGA 60.353 50.000 0.00 0.00 0.00 3.10
163 164 3.506810 CTCGCCTTGTAAACTGAGAGAG 58.493 50.000 0.00 0.00 0.00 3.20
164 165 3.154710 TCGCCTTGTAAACTGAGAGAGA 58.845 45.455 0.00 0.00 0.00 3.10
165 166 3.191581 TCGCCTTGTAAACTGAGAGAGAG 59.808 47.826 0.00 0.00 0.00 3.20
166 167 3.674682 CGCCTTGTAAACTGAGAGAGAGG 60.675 52.174 0.00 0.00 0.00 3.69
167 168 3.259625 GCCTTGTAAACTGAGAGAGAGGT 59.740 47.826 0.00 0.00 0.00 3.85
168 169 4.463186 GCCTTGTAAACTGAGAGAGAGGTA 59.537 45.833 0.00 0.00 0.00 3.08
206 207 4.801330 ACTAATTAAAGCTGGCCAAACC 57.199 40.909 7.01 0.00 39.84 3.27
207 208 3.513912 ACTAATTAAAGCTGGCCAAACCC 59.486 43.478 7.01 0.00 37.83 4.11
363 365 0.179062 AGTCATCGGATGGCTCTTGC 60.179 55.000 18.95 1.60 42.62 4.01
531 533 4.413495 ACATTAATCACCCACGAAAACG 57.587 40.909 0.00 0.00 0.00 3.60
555 557 2.036098 TGGCACCCCATCTGCAAG 59.964 61.111 0.00 0.00 35.79 4.01
622 625 4.026228 CACGAGAATCAAATCCACGATGAG 60.026 45.833 0.00 0.00 33.17 2.90
630 1732 4.571984 TCAAATCCACGATGAGCAATACTG 59.428 41.667 0.00 0.00 0.00 2.74
687 1792 7.592938 TGCAAGTAAATGAGTAAAATGACCAG 58.407 34.615 0.00 0.00 0.00 4.00
705 1810 7.718334 TGACCAGAAGATACTCAACTGAATA 57.282 36.000 0.00 0.00 0.00 1.75
778 1883 1.469767 GGAAGATTAACCCGCGTACGT 60.470 52.381 17.90 0.00 37.70 3.57
786 1891 2.406401 CCGCGTACGTACAGGGAG 59.594 66.667 24.50 10.58 37.70 4.30
879 2076 4.034279 GGATATATACAGACGAGGCGAGAC 59.966 50.000 0.00 0.00 0.00 3.36
880 2077 1.215244 TATACAGACGAGGCGAGACG 58.785 55.000 0.00 0.00 0.00 4.18
881 2078 0.461516 ATACAGACGAGGCGAGACGA 60.462 55.000 0.00 0.00 0.00 4.20
882 2079 1.082679 TACAGACGAGGCGAGACGAG 61.083 60.000 0.00 0.00 0.00 4.18
883 2080 2.101233 CAGACGAGGCGAGACGAGA 61.101 63.158 0.00 0.00 0.00 4.04
884 2081 2.101835 AGACGAGGCGAGACGAGAC 61.102 63.158 0.00 0.00 0.00 3.36
885 2082 3.423077 GACGAGGCGAGACGAGACG 62.423 68.421 0.00 0.00 0.00 4.18
886 2083 4.225340 CGAGGCGAGACGAGACGG 62.225 72.222 0.00 0.00 0.00 4.79
887 2084 3.878519 GAGGCGAGACGAGACGGG 61.879 72.222 0.00 0.00 0.00 5.28
888 2085 4.405671 AGGCGAGACGAGACGGGA 62.406 66.667 0.00 0.00 0.00 5.14
1425 2644 3.507009 CGTCGTCCTCCTCCGTCC 61.507 72.222 0.00 0.00 0.00 4.79
1733 2952 3.083349 CATCCCTCTGCCGTCCCA 61.083 66.667 0.00 0.00 0.00 4.37
2315 3550 0.627986 AGCTGGAAATGAAGAGGGGG 59.372 55.000 0.00 0.00 0.00 5.40
2370 3607 1.699083 TGGTTCATGAACTGCTCTGGA 59.301 47.619 31.81 8.63 40.94 3.86
2561 3799 3.584406 CTGCCTATCATCCCCTTGTGATA 59.416 47.826 0.00 0.00 36.53 2.15
2654 3892 3.308438 TCGTAAGGGTGTGCTAACTTC 57.692 47.619 0.00 0.00 38.47 3.01
2722 3970 7.523219 CAATAGTTTTTATCAAGTGGTGCGTA 58.477 34.615 0.00 0.00 0.00 4.42
2754 4002 5.537188 GTGGATTGTGCTAATTTTTCCACA 58.463 37.500 12.91 0.00 46.88 4.17
2857 4105 6.349300 AGGACTCGTTATTACTTGCATCATT 58.651 36.000 0.00 0.00 0.00 2.57
2908 4156 4.947077 CAACCGTTATTGCTGTTTTCAC 57.053 40.909 0.00 0.00 0.00 3.18
2910 4158 2.031508 ACCGTTATTGCTGTTTTCACCG 60.032 45.455 0.00 0.00 0.00 4.94
3020 4268 4.891756 AGATGGAAGACAATTAGGCCATTG 59.108 41.667 12.98 12.98 39.67 2.82
3064 4312 3.594134 AGATTGCTTGTGTCACTCTAGC 58.406 45.455 14.46 14.46 0.00 3.42
3108 4356 4.953269 TGATTACAATTTTGCTCGACGAC 58.047 39.130 0.00 0.00 0.00 4.34
3175 4423 4.400251 AGCTTACAATTCCCACATCACATG 59.600 41.667 0.00 0.00 0.00 3.21
3188 4436 6.375174 CCCACATCACATGAAGTATGAAAAGA 59.625 38.462 0.00 0.00 39.21 2.52
3270 4518 3.338249 TGCTGATGAAGTCACCTTAAGC 58.662 45.455 0.00 0.00 32.22 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.492973 ACGGTGTAGTTTTTGTGTTATATAGTT 57.507 29.630 0.00 0.00 0.00 2.24
23 24 9.492973 AACGGTGTAGTTTTTGTGTTATATAGT 57.507 29.630 0.00 0.00 0.00 2.12
26 27 8.838365 TCAAACGGTGTAGTTTTTGTGTTATAT 58.162 29.630 0.00 0.00 41.84 0.86
27 28 8.206325 TCAAACGGTGTAGTTTTTGTGTTATA 57.794 30.769 0.00 0.00 41.84 0.98
28 29 7.086230 TCAAACGGTGTAGTTTTTGTGTTAT 57.914 32.000 0.00 0.00 41.84 1.89
29 30 6.492007 TCAAACGGTGTAGTTTTTGTGTTA 57.508 33.333 0.00 0.00 41.84 2.41
30 31 5.373981 TCAAACGGTGTAGTTTTTGTGTT 57.626 34.783 0.00 0.00 41.84 3.32
31 32 5.373981 TTCAAACGGTGTAGTTTTTGTGT 57.626 34.783 0.00 0.00 41.84 3.72
32 33 6.692232 TTTTCAAACGGTGTAGTTTTTGTG 57.308 33.333 0.00 0.00 41.84 3.33
33 34 8.460428 TCTATTTTCAAACGGTGTAGTTTTTGT 58.540 29.630 0.00 0.00 41.84 2.83
34 35 8.844441 TCTATTTTCAAACGGTGTAGTTTTTG 57.156 30.769 0.00 0.00 41.84 2.44
35 36 9.292846 GTTCTATTTTCAAACGGTGTAGTTTTT 57.707 29.630 0.00 0.00 41.84 1.94
36 37 8.460428 TGTTCTATTTTCAAACGGTGTAGTTTT 58.540 29.630 0.00 0.00 41.84 2.43
37 38 7.987649 TGTTCTATTTTCAAACGGTGTAGTTT 58.012 30.769 0.00 0.00 44.27 2.66
38 39 7.556733 TGTTCTATTTTCAAACGGTGTAGTT 57.443 32.000 0.00 0.00 35.59 2.24
39 40 7.660208 AGATGTTCTATTTTCAAACGGTGTAGT 59.340 33.333 0.00 0.00 0.00 2.73
40 41 7.957484 CAGATGTTCTATTTTCAAACGGTGTAG 59.043 37.037 0.00 0.00 0.00 2.74
41 42 7.658167 TCAGATGTTCTATTTTCAAACGGTGTA 59.342 33.333 0.00 0.00 0.00 2.90
42 43 6.485313 TCAGATGTTCTATTTTCAAACGGTGT 59.515 34.615 0.00 0.00 0.00 4.16
43 44 6.898041 TCAGATGTTCTATTTTCAAACGGTG 58.102 36.000 0.00 0.00 0.00 4.94
44 45 7.228706 ACTTCAGATGTTCTATTTTCAAACGGT 59.771 33.333 0.00 0.00 0.00 4.83
45 46 7.584987 ACTTCAGATGTTCTATTTTCAAACGG 58.415 34.615 0.00 0.00 0.00 4.44
46 47 9.450807 AAACTTCAGATGTTCTATTTTCAAACG 57.549 29.630 2.28 0.00 0.00 3.60
95 96 9.920946 ATTTGACCAACCTAATACAAGTCATAT 57.079 29.630 0.00 0.00 33.21 1.78
96 97 9.747898 AATTTGACCAACCTAATACAAGTCATA 57.252 29.630 0.00 0.00 33.21 2.15
97 98 8.522830 CAATTTGACCAACCTAATACAAGTCAT 58.477 33.333 0.00 0.00 33.21 3.06
98 99 7.721842 TCAATTTGACCAACCTAATACAAGTCA 59.278 33.333 0.00 0.00 0.00 3.41
99 100 8.021396 GTCAATTTGACCAACCTAATACAAGTC 58.979 37.037 17.07 0.00 41.37 3.01
100 101 7.308348 CGTCAATTTGACCAACCTAATACAAGT 60.308 37.037 20.87 0.00 44.20 3.16
101 102 7.021196 CGTCAATTTGACCAACCTAATACAAG 58.979 38.462 20.87 1.46 44.20 3.16
102 103 6.711194 TCGTCAATTTGACCAACCTAATACAA 59.289 34.615 20.87 0.00 44.20 2.41
103 104 6.148150 GTCGTCAATTTGACCAACCTAATACA 59.852 38.462 20.87 0.00 44.20 2.29
104 105 6.540205 GTCGTCAATTTGACCAACCTAATAC 58.460 40.000 20.87 5.03 44.20 1.89
105 106 6.730960 GTCGTCAATTTGACCAACCTAATA 57.269 37.500 20.87 0.00 44.20 0.98
106 107 5.622770 GTCGTCAATTTGACCAACCTAAT 57.377 39.130 20.87 0.00 44.20 1.73
114 115 5.201262 ACCCCTAGGTCGTCAATTTGACC 62.201 52.174 20.87 10.15 46.45 4.02
115 116 2.027469 ACCCCTAGGTCGTCAATTTGAC 60.027 50.000 17.76 17.76 46.45 3.18
116 117 2.262637 ACCCCTAGGTCGTCAATTTGA 58.737 47.619 8.29 0.00 46.45 2.69
117 118 2.781681 ACCCCTAGGTCGTCAATTTG 57.218 50.000 8.29 0.00 46.45 2.32
118 119 2.167075 CGTACCCCTAGGTCGTCAATTT 59.833 50.000 8.29 0.00 46.45 1.82
119 120 1.753073 CGTACCCCTAGGTCGTCAATT 59.247 52.381 8.29 0.00 46.45 2.32
120 121 1.396653 CGTACCCCTAGGTCGTCAAT 58.603 55.000 8.29 0.00 46.45 2.57
121 122 1.315257 GCGTACCCCTAGGTCGTCAA 61.315 60.000 8.29 0.00 46.45 3.18
122 123 1.750399 GCGTACCCCTAGGTCGTCA 60.750 63.158 8.29 0.00 46.45 4.35
123 124 2.828128 CGCGTACCCCTAGGTCGTC 61.828 68.421 8.29 3.46 46.45 4.20
124 125 2.825836 CGCGTACCCCTAGGTCGT 60.826 66.667 8.29 6.00 46.45 4.34
125 126 4.261781 GCGCGTACCCCTAGGTCG 62.262 72.222 8.43 8.12 46.45 4.79
126 127 2.832201 AGCGCGTACCCCTAGGTC 60.832 66.667 8.43 0.00 46.45 3.85
128 129 3.962421 CGAGCGCGTACCCCTAGG 61.962 72.222 8.43 0.06 40.04 3.02
129 130 4.625781 GCGAGCGCGTACCCCTAG 62.626 72.222 12.44 0.00 40.36 3.02
134 135 3.688475 TACAAGGCGAGCGCGTACC 62.688 63.158 12.44 4.94 43.06 3.34
135 136 1.346378 TTTACAAGGCGAGCGCGTAC 61.346 55.000 12.44 5.10 43.06 3.67
136 137 1.080637 TTTACAAGGCGAGCGCGTA 60.081 52.632 12.44 3.97 43.06 4.42
137 138 2.356553 TTTACAAGGCGAGCGCGT 60.357 55.556 12.44 6.51 43.06 6.01
138 139 2.095843 GTTTACAAGGCGAGCGCG 59.904 61.111 5.14 5.14 43.06 6.86
139 140 1.132640 CAGTTTACAAGGCGAGCGC 59.867 57.895 6.27 6.27 41.06 5.92
140 141 0.716108 CTCAGTTTACAAGGCGAGCG 59.284 55.000 0.00 0.00 0.00 5.03
141 142 1.996191 CTCTCAGTTTACAAGGCGAGC 59.004 52.381 0.00 0.00 0.00 5.03
142 143 3.191581 TCTCTCTCAGTTTACAAGGCGAG 59.808 47.826 0.00 0.00 0.00 5.03
143 144 3.154710 TCTCTCTCAGTTTACAAGGCGA 58.845 45.455 0.00 0.00 0.00 5.54
144 145 3.506810 CTCTCTCTCAGTTTACAAGGCG 58.493 50.000 0.00 0.00 0.00 5.52
145 146 3.259625 ACCTCTCTCTCAGTTTACAAGGC 59.740 47.826 0.00 0.00 0.00 4.35
146 147 5.712917 ACTACCTCTCTCTCAGTTTACAAGG 59.287 44.000 0.00 0.00 0.00 3.61
147 148 6.827586 ACTACCTCTCTCTCAGTTTACAAG 57.172 41.667 0.00 0.00 0.00 3.16
148 149 7.460071 AGTACTACCTCTCTCTCAGTTTACAA 58.540 38.462 0.00 0.00 0.00 2.41
149 150 7.018487 AGTACTACCTCTCTCTCAGTTTACA 57.982 40.000 0.00 0.00 0.00 2.41
150 151 8.260114 ACTAGTACTACCTCTCTCTCAGTTTAC 58.740 40.741 0.00 0.00 0.00 2.01
151 152 8.378115 ACTAGTACTACCTCTCTCTCAGTTTA 57.622 38.462 0.00 0.00 0.00 2.01
152 153 7.261688 ACTAGTACTACCTCTCTCTCAGTTT 57.738 40.000 0.00 0.00 0.00 2.66
153 154 6.879367 ACTAGTACTACCTCTCTCTCAGTT 57.121 41.667 0.00 0.00 0.00 3.16
154 155 7.356680 TCTACTAGTACTACCTCTCTCTCAGT 58.643 42.308 0.00 0.00 0.00 3.41
155 156 7.828508 TCTACTAGTACTACCTCTCTCTCAG 57.171 44.000 0.00 0.00 0.00 3.35
156 157 8.005976 TCATCTACTAGTACTACCTCTCTCTCA 58.994 40.741 0.00 0.00 0.00 3.27
157 158 8.413309 TCATCTACTAGTACTACCTCTCTCTC 57.587 42.308 0.00 0.00 0.00 3.20
158 159 8.967779 ATCATCTACTAGTACTACCTCTCTCT 57.032 38.462 0.00 0.00 0.00 3.10
218 219 7.599245 TCAAACGTTGTACATTTGTTCCTTTTT 59.401 29.630 16.22 0.00 35.33 1.94
489 491 4.644234 TGTTCAAATCTTCAAGACAGGCAA 59.356 37.500 0.00 0.00 0.00 4.52
531 533 2.242043 CAGATGGGGTGCCATTATTCC 58.758 52.381 0.00 0.00 0.00 3.01
555 557 6.739550 CCGTTACCATTAATTTTCTTGACGTC 59.260 38.462 9.11 9.11 0.00 4.34
607 610 4.571984 CAGTATTGCTCATCGTGGATTTGA 59.428 41.667 0.00 0.00 0.00 2.69
630 1732 7.799447 TGTAACGGTTTATGCGATATTTAATGC 59.201 33.333 0.00 0.00 0.00 3.56
642 1744 4.156182 GCAGTTTCTGTAACGGTTTATGC 58.844 43.478 0.00 0.00 41.78 3.14
705 1810 4.201910 CGGATGAATGCGTATCTTTTGGTT 60.202 41.667 0.00 0.00 36.84 3.67
773 1878 2.022934 CTTCCTCCTCCCTGTACGTAC 58.977 57.143 18.90 18.90 0.00 3.67
778 1883 2.270434 ATTGCTTCCTCCTCCCTGTA 57.730 50.000 0.00 0.00 0.00 2.74
786 1891 3.145286 GCAGATCCTAATTGCTTCCTCC 58.855 50.000 0.00 0.00 35.05 4.30
1112 2331 2.031163 GACGCCTGCTTGGACACT 59.969 61.111 0.49 0.00 38.35 3.55
1425 2644 2.192443 CAGCCTGAGCATCCCCAG 59.808 66.667 0.00 0.00 43.56 4.45
2595 3833 7.115378 GCAAGAATCCACATTTTTGTACTTCTG 59.885 37.037 0.00 0.00 36.76 3.02
2607 3845 1.551883 GGCCAAGCAAGAATCCACATT 59.448 47.619 0.00 0.00 0.00 2.71
2608 3846 1.188863 GGCCAAGCAAGAATCCACAT 58.811 50.000 0.00 0.00 0.00 3.21
2722 3970 0.179045 GCACAATCCACGGGCTCTAT 60.179 55.000 0.00 0.00 0.00 1.98
2754 4002 8.186821 GCTCATGCAGATTAGTTTAGTTCAAAT 58.813 33.333 0.00 0.00 39.41 2.32
2908 4156 2.684881 CCAATTTCAGGTCTTCATCCGG 59.315 50.000 0.00 0.00 0.00 5.14
2910 4158 3.359950 AGCCAATTTCAGGTCTTCATCC 58.640 45.455 0.00 0.00 0.00 3.51
3020 4268 1.767681 AGAGAATCACATGGCTCTCCC 59.232 52.381 0.00 0.00 37.82 4.30
3064 4312 4.918810 AAGTTGCACACTTCTTTAAGGG 57.081 40.909 8.03 0.00 42.62 3.95
3108 4356 6.496571 AGACCATCTAGAAATTAAGACGTCG 58.503 40.000 10.46 0.00 33.04 5.12
3175 4423 6.310467 TGTGCGTGTAGATCTTTTCATACTTC 59.690 38.462 0.00 0.00 0.00 3.01
3188 4436 2.923655 CGAGACAAATGTGCGTGTAGAT 59.076 45.455 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.