Multiple sequence alignment - TraesCS7D01G303600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G303600 chr7D 100.000 3903 0 0 1 3903 384950191 384946289 0.000000e+00 7208.0
1 TraesCS7D01G303600 chr7D 90.137 365 29 5 2 365 32906542 32906184 5.900000e-128 468.0
2 TraesCS7D01G303600 chr7D 85.330 409 46 7 1 398 511666070 511665665 1.010000e-110 411.0
3 TraesCS7D01G303600 chr7A 94.406 2020 67 18 1904 3903 432980573 432978580 0.000000e+00 3062.0
4 TraesCS7D01G303600 chr7A 93.909 985 39 4 664 1639 432981549 432980577 0.000000e+00 1467.0
5 TraesCS7D01G303600 chr7A 80.982 163 26 4 452 612 608680613 608680454 1.470000e-24 124.0
6 TraesCS7D01G303600 chr7B 97.263 1096 23 2 2810 3903 379429800 379428710 0.000000e+00 1851.0
7 TraesCS7D01G303600 chr7B 93.672 1043 37 9 612 1639 379431684 379430656 0.000000e+00 1533.0
8 TraesCS7D01G303600 chr7B 93.750 880 27 15 1902 2778 379430654 379429800 0.000000e+00 1295.0
9 TraesCS7D01G303600 chrUn 99.623 265 1 0 1639 1903 397677947 397677683 5.860000e-133 484.0
10 TraesCS7D01G303600 chrUn 83.077 195 27 4 420 614 279899991 279899803 5.180000e-39 172.0
11 TraesCS7D01G303600 chr3D 87.799 418 43 3 1 411 83892831 83892415 2.110000e-132 483.0
12 TraesCS7D01G303600 chr3D 82.809 413 62 7 1 411 590675831 590675426 1.030000e-95 361.0
13 TraesCS7D01G303600 chr1D 98.491 265 4 0 1639 1903 254478912 254478648 5.900000e-128 468.0
14 TraesCS7D01G303600 chr1D 94.224 277 4 3 1639 1903 180353810 180354086 2.810000e-111 412.0
15 TraesCS7D01G303600 chr1D 84.691 405 50 6 1 398 331286473 331286872 1.020000e-105 394.0
16 TraesCS7D01G303600 chr1D 84.319 389 51 7 1 387 56755170 56754790 4.760000e-99 372.0
17 TraesCS7D01G303600 chr4A 96.981 265 8 0 1639 1903 309287265 309287529 2.770000e-121 446.0
18 TraesCS7D01G303600 chr6D 99.149 235 2 0 1639 1873 459928089 459928323 1.300000e-114 424.0
19 TraesCS7D01G303600 chr6D 98.844 173 2 0 1731 1903 145168956 145168784 3.790000e-80 309.0
20 TraesCS7D01G303600 chr1A 94.946 277 2 1 1639 1903 554444552 554444828 1.300000e-114 424.0
21 TraesCS7D01G303600 chr1B 85.401 411 43 5 1 394 60611395 60610985 1.010000e-110 411.0
22 TraesCS7D01G303600 chr1B 91.429 70 6 0 543 612 550480741 550480672 3.210000e-16 97.1
23 TraesCS7D01G303600 chr5A 88.554 332 37 1 75 405 522957452 522957783 6.070000e-108 401.0
24 TraesCS7D01G303600 chr2D 83.777 413 62 5 1 411 313715548 313715957 1.700000e-103 387.0
25 TraesCS7D01G303600 chr2A 96.035 227 9 0 1659 1885 18162462 18162236 1.710000e-98 370.0
26 TraesCS7D01G303600 chr5D 94.667 225 0 1 1639 1851 483805842 483806066 4.830000e-89 339.0
27 TraesCS7D01G303600 chr4B 96.000 200 8 0 1670 1869 601752972 601752773 3.760000e-85 326.0
28 TraesCS7D01G303600 chr6B 95.783 166 6 1 1739 1903 163355364 163355529 2.310000e-67 267.0
29 TraesCS7D01G303600 chr6B 100.000 30 0 0 580 609 4133283 4133312 5.450000e-04 56.5
30 TraesCS7D01G303600 chr2B 83.077 195 27 4 420 614 742327599 742327411 5.180000e-39 172.0
31 TraesCS7D01G303600 chr2B 100.000 28 0 0 580 607 145366320 145366293 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G303600 chr7D 384946289 384950191 3902 True 7208.000000 7208 100.0000 1 3903 1 chr7D.!!$R2 3902
1 TraesCS7D01G303600 chr7A 432978580 432981549 2969 True 2264.500000 3062 94.1575 664 3903 2 chr7A.!!$R2 3239
2 TraesCS7D01G303600 chr7B 379428710 379431684 2974 True 1559.666667 1851 94.8950 612 3903 3 chr7B.!!$R1 3291

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
333 334 0.038343 CGCCCAATTGGACTTGTTGG 60.038 55.0 26.6 7.38 41.57 3.77 F
588 589 0.040781 ACAAATTCGCCGTCCGTTTG 60.041 50.0 0.0 0.00 38.28 2.93 F
1776 1794 0.036388 TTCAGTCCGATTCAGGTGCC 60.036 55.0 0.0 0.00 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1757 1775 0.036388 GGCACCTGAATCGGACTGAA 60.036 55.0 0.00 0.0 0.00 3.02 R
1826 1844 0.179045 CGCCTAGCATTTAGTGGGCT 60.179 55.0 0.00 0.0 41.51 5.19 R
2957 2997 0.240945 AGCCTCATTTTTGTTCGCGG 59.759 50.0 6.13 0.0 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.998949 ATGGGGTTCTTCTCCGGC 59.001 61.111 0.00 0.00 40.23 6.13
18 19 1.616628 ATGGGGTTCTTCTCCGGCT 60.617 57.895 0.00 0.00 40.23 5.52
19 20 1.627297 ATGGGGTTCTTCTCCGGCTC 61.627 60.000 0.00 0.00 40.23 4.70
20 21 2.585153 GGGTTCTTCTCCGGCTCC 59.415 66.667 0.00 0.00 0.00 4.70
21 22 2.184579 GGTTCTTCTCCGGCTCCG 59.815 66.667 0.00 0.48 39.44 4.63
32 33 4.388499 GGCTCCGGCTCCGACAAA 62.388 66.667 10.28 0.00 42.83 2.83
33 34 2.815647 GCTCCGGCTCCGACAAAG 60.816 66.667 10.28 3.20 42.83 2.77
34 35 2.815647 CTCCGGCTCCGACAAAGC 60.816 66.667 10.28 0.00 42.83 3.51
39 40 3.267974 GCTCCGACAAAGCCAAGG 58.732 61.111 0.00 0.00 33.53 3.61
40 41 2.335712 GCTCCGACAAAGCCAAGGG 61.336 63.158 0.00 0.00 33.53 3.95
57 58 4.432741 GCAAGGCCACCCCTCTCC 62.433 72.222 5.01 0.00 45.62 3.71
58 59 3.732849 CAAGGCCACCCCTCTCCC 61.733 72.222 5.01 0.00 45.62 4.30
82 83 4.845580 CTGCCGGCGCCTTCTCAT 62.846 66.667 26.68 0.00 0.00 2.90
83 84 4.838152 TGCCGGCGCCTTCTCATC 62.838 66.667 26.68 5.70 0.00 2.92
89 90 4.207281 CGCCTTCTCATCGGCCGA 62.207 66.667 33.12 33.12 43.38 5.54
90 91 2.279784 GCCTTCTCATCGGCCGAG 60.280 66.667 33.87 23.75 40.43 4.63
91 92 2.419198 CCTTCTCATCGGCCGAGG 59.581 66.667 32.82 32.82 0.00 4.63
92 93 2.279784 CTTCTCATCGGCCGAGGC 60.280 66.667 33.67 5.37 41.06 4.70
93 94 3.074369 TTCTCATCGGCCGAGGCA 61.074 61.111 33.67 20.07 44.11 4.75
94 95 2.967929 CTTCTCATCGGCCGAGGCAG 62.968 65.000 33.67 27.97 44.11 4.85
95 96 3.842923 CTCATCGGCCGAGGCAGT 61.843 66.667 33.67 14.20 44.11 4.40
96 97 4.147449 TCATCGGCCGAGGCAGTG 62.147 66.667 33.67 25.24 44.11 3.66
138 139 4.648626 GGAGTGGCACTGGCAGCA 62.649 66.667 27.45 1.18 43.71 4.41
139 140 3.360340 GAGTGGCACTGGCAGCAC 61.360 66.667 27.45 14.60 43.71 4.40
140 141 4.962836 AGTGGCACTGGCAGCACC 62.963 66.667 21.37 16.67 43.71 5.01
151 152 4.803426 CAGCACCGCGTCCCTCTC 62.803 72.222 4.92 0.00 0.00 3.20
155 156 3.736224 ACCGCGTCCCTCTCCCTA 61.736 66.667 4.92 0.00 0.00 3.53
156 157 3.217743 CCGCGTCCCTCTCCCTAC 61.218 72.222 4.92 0.00 0.00 3.18
157 158 3.217743 CGCGTCCCTCTCCCTACC 61.218 72.222 0.00 0.00 0.00 3.18
158 159 2.838693 GCGTCCCTCTCCCTACCC 60.839 72.222 0.00 0.00 0.00 3.69
159 160 2.518825 CGTCCCTCTCCCTACCCG 60.519 72.222 0.00 0.00 0.00 5.28
160 161 2.123382 GTCCCTCTCCCTACCCGG 60.123 72.222 0.00 0.00 0.00 5.73
161 162 2.287427 TCCCTCTCCCTACCCGGA 60.287 66.667 0.73 0.00 33.16 5.14
162 163 1.703966 TCCCTCTCCCTACCCGGAT 60.704 63.158 0.73 0.00 33.16 4.18
163 164 1.534235 CCCTCTCCCTACCCGGATG 60.534 68.421 0.73 0.00 33.16 3.51
164 165 1.233369 CCTCTCCCTACCCGGATGT 59.767 63.158 0.73 0.00 33.16 3.06
165 166 1.115930 CCTCTCCCTACCCGGATGTG 61.116 65.000 0.73 0.00 33.16 3.21
166 167 0.106167 CTCTCCCTACCCGGATGTGA 60.106 60.000 0.73 0.00 33.16 3.58
167 168 0.396695 TCTCCCTACCCGGATGTGAC 60.397 60.000 0.73 0.00 33.16 3.67
168 169 1.382146 TCCCTACCCGGATGTGACC 60.382 63.158 0.73 0.00 33.16 4.02
169 170 2.440817 CCCTACCCGGATGTGACCC 61.441 68.421 0.73 0.00 33.16 4.46
170 171 1.382695 CCTACCCGGATGTGACCCT 60.383 63.158 0.73 0.00 33.16 4.34
171 172 1.686325 CCTACCCGGATGTGACCCTG 61.686 65.000 0.73 0.00 33.16 4.45
172 173 2.311688 CTACCCGGATGTGACCCTGC 62.312 65.000 0.73 0.00 0.00 4.85
173 174 4.489771 CCCGGATGTGACCCTGCC 62.490 72.222 0.73 0.00 0.00 4.85
174 175 4.838152 CCGGATGTGACCCTGCCG 62.838 72.222 0.00 0.00 41.53 5.69
176 177 4.408821 GGATGTGACCCTGCCGCA 62.409 66.667 0.00 0.00 0.00 5.69
177 178 3.127533 GATGTGACCCTGCCGCAC 61.128 66.667 0.00 0.00 0.00 5.34
189 190 2.176546 CCGCACGACTGGCATTTG 59.823 61.111 0.00 0.00 0.00 2.32
190 191 2.176546 CGCACGACTGGCATTTGG 59.823 61.111 0.00 0.00 0.00 3.28
191 192 2.324330 CGCACGACTGGCATTTGGA 61.324 57.895 0.00 0.00 0.00 3.53
192 193 1.647545 CGCACGACTGGCATTTGGAT 61.648 55.000 0.00 0.00 0.00 3.41
193 194 0.099436 GCACGACTGGCATTTGGATC 59.901 55.000 0.00 0.00 0.00 3.36
194 195 0.734889 CACGACTGGCATTTGGATCC 59.265 55.000 4.20 4.20 0.00 3.36
195 196 0.744414 ACGACTGGCATTTGGATCCG 60.744 55.000 7.39 0.00 0.00 4.18
196 197 1.439353 CGACTGGCATTTGGATCCGG 61.439 60.000 7.39 0.00 0.00 5.14
197 198 0.107214 GACTGGCATTTGGATCCGGA 60.107 55.000 6.61 6.61 0.00 5.14
198 199 0.107017 ACTGGCATTTGGATCCGGAG 60.107 55.000 11.34 0.00 0.00 4.63
199 200 0.181114 CTGGCATTTGGATCCGGAGA 59.819 55.000 11.34 0.00 0.00 3.71
200 201 0.181114 TGGCATTTGGATCCGGAGAG 59.819 55.000 11.34 0.00 0.00 3.20
201 202 0.536006 GGCATTTGGATCCGGAGAGG 60.536 60.000 11.34 0.00 42.97 3.69
211 212 3.917760 CGGAGAGGATCCCGGTGC 61.918 72.222 8.55 0.00 46.50 5.01
212 213 3.551407 GGAGAGGATCCCGGTGCC 61.551 72.222 8.55 0.00 43.01 5.01
213 214 3.917760 GAGAGGATCCCGGTGCCG 61.918 72.222 8.55 3.25 33.66 5.69
247 248 4.514577 CTAGGGCGCACACGGAGG 62.515 72.222 14.57 0.00 40.57 4.30
255 256 4.742201 CACACGGAGGAGGTGCGG 62.742 72.222 0.00 0.00 45.94 5.69
306 307 4.547905 CACGAGGCCGCGTACGAT 62.548 66.667 34.02 8.89 43.59 3.73
307 308 4.547905 ACGAGGCCGCGTACGATG 62.548 66.667 33.73 10.33 43.61 3.84
308 309 4.547905 CGAGGCCGCGTACGATGT 62.548 66.667 21.77 0.00 43.93 3.06
309 310 2.654404 GAGGCCGCGTACGATGTC 60.654 66.667 21.65 10.34 43.93 3.06
310 311 4.547905 AGGCCGCGTACGATGTCG 62.548 66.667 21.65 12.77 43.93 4.35
311 312 4.541482 GGCCGCGTACGATGTCGA 62.541 66.667 21.65 0.00 43.93 4.20
312 313 3.310251 GCCGCGTACGATGTCGAC 61.310 66.667 21.65 9.11 43.93 4.20
313 314 2.402388 CCGCGTACGATGTCGACT 59.598 61.111 21.65 1.84 43.93 4.18
314 315 1.650536 CCGCGTACGATGTCGACTC 60.651 63.158 21.65 10.63 43.93 3.36
315 316 1.992118 CGCGTACGATGTCGACTCG 60.992 63.158 25.46 25.46 43.93 4.18
316 317 2.277503 GCGTACGATGTCGACTCGC 61.278 63.158 26.39 21.44 43.02 5.03
317 318 1.650536 CGTACGATGTCGACTCGCC 60.651 63.158 26.39 19.29 43.02 5.54
318 319 1.298190 GTACGATGTCGACTCGCCC 60.298 63.158 26.39 17.66 43.02 6.13
319 320 1.746239 TACGATGTCGACTCGCCCA 60.746 57.895 26.39 15.22 43.02 5.36
320 321 1.307355 TACGATGTCGACTCGCCCAA 61.307 55.000 26.39 13.70 43.02 4.12
321 322 1.226974 CGATGTCGACTCGCCCAAT 60.227 57.895 17.92 0.00 43.02 3.16
322 323 0.806102 CGATGTCGACTCGCCCAATT 60.806 55.000 17.92 0.00 43.02 2.32
323 324 0.652592 GATGTCGACTCGCCCAATTG 59.347 55.000 17.92 0.00 0.00 2.32
324 325 0.744414 ATGTCGACTCGCCCAATTGG 60.744 55.000 18.21 18.21 37.09 3.16
325 326 1.079405 GTCGACTCGCCCAATTGGA 60.079 57.895 26.60 5.03 37.39 3.53
326 327 1.079405 TCGACTCGCCCAATTGGAC 60.079 57.895 26.60 14.04 37.39 4.02
327 328 1.079127 CGACTCGCCCAATTGGACT 60.079 57.895 26.60 0.00 37.39 3.85
328 329 0.673644 CGACTCGCCCAATTGGACTT 60.674 55.000 26.60 4.94 37.39 3.01
329 330 0.804989 GACTCGCCCAATTGGACTTG 59.195 55.000 26.60 14.62 37.39 3.16
330 331 0.110486 ACTCGCCCAATTGGACTTGT 59.890 50.000 26.60 15.23 37.39 3.16
331 332 1.247567 CTCGCCCAATTGGACTTGTT 58.752 50.000 26.60 0.00 37.39 2.83
332 333 0.958091 TCGCCCAATTGGACTTGTTG 59.042 50.000 26.60 8.14 37.39 3.33
333 334 0.038343 CGCCCAATTGGACTTGTTGG 60.038 55.000 26.60 7.38 41.57 3.77
334 335 1.047801 GCCCAATTGGACTTGTTGGT 58.952 50.000 26.60 0.00 40.57 3.67
335 336 1.416030 GCCCAATTGGACTTGTTGGTT 59.584 47.619 26.60 0.00 40.57 3.67
336 337 2.547855 GCCCAATTGGACTTGTTGGTTC 60.548 50.000 26.60 0.00 40.57 3.62
337 338 2.288152 CCCAATTGGACTTGTTGGTTCG 60.288 50.000 26.60 0.00 40.57 3.95
338 339 2.393764 CAATTGGACTTGTTGGTTCGC 58.606 47.619 0.00 0.00 0.00 4.70
339 340 0.958822 ATTGGACTTGTTGGTTCGCC 59.041 50.000 0.00 0.00 37.92 5.54
340 341 0.106918 TTGGACTTGTTGGTTCGCCT 60.107 50.000 0.00 0.00 38.36 5.52
341 342 0.106918 TGGACTTGTTGGTTCGCCTT 60.107 50.000 0.00 0.00 38.36 4.35
342 343 0.591659 GGACTTGTTGGTTCGCCTTC 59.408 55.000 0.00 0.00 38.36 3.46
343 344 0.234884 GACTTGTTGGTTCGCCTTCG 59.765 55.000 0.00 0.00 38.36 3.79
344 345 0.179067 ACTTGTTGGTTCGCCTTCGA 60.179 50.000 0.00 0.00 43.89 3.71
345 346 0.512952 CTTGTTGGTTCGCCTTCGAG 59.487 55.000 0.00 0.00 46.34 4.04
346 347 1.503818 TTGTTGGTTCGCCTTCGAGC 61.504 55.000 0.00 0.00 46.34 5.03
347 348 1.959226 GTTGGTTCGCCTTCGAGCA 60.959 57.895 4.18 0.00 45.86 4.26
348 349 1.959226 TTGGTTCGCCTTCGAGCAC 60.959 57.895 4.18 0.00 45.86 4.40
349 350 3.479269 GGTTCGCCTTCGAGCACG 61.479 66.667 0.00 0.00 45.86 5.34
350 351 2.430244 GTTCGCCTTCGAGCACGA 60.430 61.111 0.88 0.88 46.34 4.35
359 360 4.544689 CGAGCACGAGGAGGCGAG 62.545 72.222 0.00 0.00 42.66 5.03
360 361 4.200283 GAGCACGAGGAGGCGAGG 62.200 72.222 0.00 0.00 34.54 4.63
382 383 3.479269 GTGGCTTCCGCGAAGTCG 61.479 66.667 8.23 0.00 45.99 4.18
383 384 3.986006 TGGCTTCCGCGAAGTCGT 61.986 61.111 8.23 0.00 45.99 4.34
384 385 3.179939 GGCTTCCGCGAAGTCGTC 61.180 66.667 8.23 0.00 41.27 4.20
385 386 3.179939 GCTTCCGCGAAGTCGTCC 61.180 66.667 8.23 0.00 41.27 4.79
386 387 2.874780 CTTCCGCGAAGTCGTCCG 60.875 66.667 8.23 0.00 42.22 4.79
387 388 3.606065 CTTCCGCGAAGTCGTCCGT 62.606 63.158 8.23 0.00 42.22 4.69
388 389 2.244436 CTTCCGCGAAGTCGTCCGTA 62.244 60.000 8.23 0.00 42.22 4.02
389 390 2.244436 TTCCGCGAAGTCGTCCGTAG 62.244 60.000 8.23 0.00 42.22 3.51
390 391 2.943034 CGCGAAGTCGTCCGTAGC 60.943 66.667 0.00 0.00 42.22 3.58
391 392 2.484203 GCGAAGTCGTCCGTAGCT 59.516 61.111 2.25 0.00 42.22 3.32
392 393 1.583194 GCGAAGTCGTCCGTAGCTC 60.583 63.158 2.25 0.00 42.22 4.09
393 394 1.296722 CGAAGTCGTCCGTAGCTCG 60.297 63.158 0.00 0.00 35.41 5.03
394 395 1.792941 GAAGTCGTCCGTAGCTCGT 59.207 57.895 0.00 0.00 37.94 4.18
395 396 0.247616 GAAGTCGTCCGTAGCTCGTC 60.248 60.000 0.00 0.00 37.94 4.20
396 397 1.964290 AAGTCGTCCGTAGCTCGTCG 61.964 60.000 0.00 2.08 37.94 5.12
397 398 3.857854 TCGTCCGTAGCTCGTCGC 61.858 66.667 0.00 0.00 37.94 5.19
421 422 2.046700 CCTTCGTGGCCGGCTTTA 60.047 61.111 28.56 10.66 33.95 1.85
422 423 1.673009 CCTTCGTGGCCGGCTTTAA 60.673 57.895 28.56 14.43 33.95 1.52
423 424 1.029947 CCTTCGTGGCCGGCTTTAAT 61.030 55.000 28.56 0.00 33.95 1.40
424 425 0.098728 CTTCGTGGCCGGCTTTAATG 59.901 55.000 28.56 14.81 33.95 1.90
425 426 0.606944 TTCGTGGCCGGCTTTAATGT 60.607 50.000 28.56 0.00 33.95 2.71
426 427 0.606944 TCGTGGCCGGCTTTAATGTT 60.607 50.000 28.56 0.00 33.95 2.71
427 428 0.242555 CGTGGCCGGCTTTAATGTTT 59.757 50.000 28.56 0.00 0.00 2.83
428 429 1.708822 GTGGCCGGCTTTAATGTTTG 58.291 50.000 28.56 0.00 0.00 2.93
429 430 1.000394 GTGGCCGGCTTTAATGTTTGT 60.000 47.619 28.56 0.00 0.00 2.83
430 431 1.689273 TGGCCGGCTTTAATGTTTGTT 59.311 42.857 28.56 0.00 0.00 2.83
431 432 2.103263 TGGCCGGCTTTAATGTTTGTTT 59.897 40.909 28.56 0.00 0.00 2.83
432 433 3.135225 GGCCGGCTTTAATGTTTGTTTT 58.865 40.909 28.56 0.00 0.00 2.43
433 434 3.562141 GGCCGGCTTTAATGTTTGTTTTT 59.438 39.130 28.56 0.00 0.00 1.94
434 435 4.750598 GGCCGGCTTTAATGTTTGTTTTTA 59.249 37.500 28.56 0.00 0.00 1.52
435 436 5.410132 GGCCGGCTTTAATGTTTGTTTTTAT 59.590 36.000 28.56 0.00 0.00 1.40
436 437 6.072948 GGCCGGCTTTAATGTTTGTTTTTATT 60.073 34.615 28.56 0.00 0.00 1.40
437 438 7.356540 GCCGGCTTTAATGTTTGTTTTTATTT 58.643 30.769 22.15 0.00 0.00 1.40
438 439 7.858382 GCCGGCTTTAATGTTTGTTTTTATTTT 59.142 29.630 22.15 0.00 0.00 1.82
439 440 9.376171 CCGGCTTTAATGTTTGTTTTTATTTTC 57.624 29.630 0.00 0.00 0.00 2.29
440 441 9.086996 CGGCTTTAATGTTTGTTTTTATTTTCG 57.913 29.630 0.00 0.00 0.00 3.46
476 477 3.794646 TTTTTCGCGCGTCGTTAAA 57.205 42.105 30.98 19.24 39.67 1.52
477 478 2.082733 TTTTTCGCGCGTCGTTAAAA 57.917 40.000 30.98 23.81 39.67 1.52
478 479 2.297547 TTTTCGCGCGTCGTTAAAAT 57.702 40.000 30.98 0.00 39.67 1.82
479 480 1.582590 TTTCGCGCGTCGTTAAAATG 58.417 45.000 30.98 0.00 39.67 2.32
480 481 0.179245 TTCGCGCGTCGTTAAAATGG 60.179 50.000 30.98 0.00 39.67 3.16
481 482 1.579122 CGCGCGTCGTTAAAATGGG 60.579 57.895 24.19 0.00 0.00 4.00
482 483 1.498611 GCGCGTCGTTAAAATGGGT 59.501 52.632 8.43 0.00 0.00 4.51
483 484 0.519792 GCGCGTCGTTAAAATGGGTC 60.520 55.000 8.43 0.00 0.00 4.46
484 485 0.246989 CGCGTCGTTAAAATGGGTCG 60.247 55.000 0.00 0.00 0.00 4.79
485 486 1.070038 GCGTCGTTAAAATGGGTCGA 58.930 50.000 0.00 0.00 0.00 4.20
486 487 1.460359 GCGTCGTTAAAATGGGTCGAA 59.540 47.619 0.00 0.00 32.56 3.71
487 488 2.722706 GCGTCGTTAAAATGGGTCGAAC 60.723 50.000 0.00 0.00 32.56 3.95
488 489 2.159801 CGTCGTTAAAATGGGTCGAACC 60.160 50.000 14.24 14.24 37.60 3.62
489 490 2.807392 GTCGTTAAAATGGGTCGAACCA 59.193 45.455 27.46 27.46 46.24 3.67
490 491 3.068560 TCGTTAAAATGGGTCGAACCAG 58.931 45.455 28.86 12.39 45.20 4.00
491 492 2.413634 CGTTAAAATGGGTCGAACCAGC 60.414 50.000 28.86 11.84 45.20 4.85
492 493 1.444836 TAAAATGGGTCGAACCAGCG 58.555 50.000 28.86 0.00 45.20 5.18
493 494 0.536460 AAAATGGGTCGAACCAGCGT 60.536 50.000 28.86 12.87 45.20 5.07
494 495 0.536460 AAATGGGTCGAACCAGCGTT 60.536 50.000 28.86 18.15 45.20 4.84
495 496 1.234615 AATGGGTCGAACCAGCGTTG 61.235 55.000 28.86 0.00 45.20 4.10
515 516 3.875039 CGCATGCGCCGATCCAAA 61.875 61.111 29.09 0.00 33.11 3.28
516 517 2.278142 GCATGCGCCGATCCAAAC 60.278 61.111 4.18 0.00 0.00 2.93
517 518 2.023181 CATGCGCCGATCCAAACG 59.977 61.111 4.18 0.00 0.00 3.60
518 519 2.435938 ATGCGCCGATCCAAACGT 60.436 55.556 4.18 0.00 0.00 3.99
519 520 2.749865 ATGCGCCGATCCAAACGTG 61.750 57.895 4.18 0.00 0.00 4.49
532 533 4.027755 ACGTGGAAGCAGACGTTG 57.972 55.556 0.00 0.00 46.27 4.10
533 534 1.594293 ACGTGGAAGCAGACGTTGG 60.594 57.895 0.00 0.00 46.27 3.77
534 535 1.594293 CGTGGAAGCAGACGTTGGT 60.594 57.895 0.00 0.00 39.75 3.67
535 536 1.831389 CGTGGAAGCAGACGTTGGTG 61.831 60.000 0.00 0.00 37.63 4.17
536 537 0.814010 GTGGAAGCAGACGTTGGTGT 60.814 55.000 0.00 0.00 37.63 4.16
537 538 0.531974 TGGAAGCAGACGTTGGTGTC 60.532 55.000 0.00 0.00 37.63 3.67
538 539 1.228657 GGAAGCAGACGTTGGTGTCC 61.229 60.000 0.00 3.14 39.77 4.02
539 540 0.531974 GAAGCAGACGTTGGTGTCCA 60.532 55.000 0.00 0.00 39.77 4.02
540 541 0.108585 AAGCAGACGTTGGTGTCCAT 59.891 50.000 0.00 0.00 39.77 3.41
541 542 0.320771 AGCAGACGTTGGTGTCCATC 60.321 55.000 0.00 0.00 39.77 3.51
543 544 1.014044 CAGACGTTGGTGTCCATCGG 61.014 60.000 18.86 5.96 46.94 4.18
544 545 1.740296 GACGTTGGTGTCCATCGGG 60.740 63.158 18.86 0.00 46.94 5.14
545 546 3.124921 CGTTGGTGTCCATCGGGC 61.125 66.667 10.28 0.00 41.37 6.13
546 547 2.750237 GTTGGTGTCCATCGGGCC 60.750 66.667 0.00 0.00 31.53 5.80
547 548 4.402528 TTGGTGTCCATCGGGCCG 62.403 66.667 22.51 22.51 31.53 6.13
549 550 4.832608 GGTGTCCATCGGGCCGAC 62.833 72.222 33.71 19.90 39.18 4.79
550 551 4.832608 GTGTCCATCGGGCCGACC 62.833 72.222 33.71 19.24 39.18 4.79
560 561 3.434454 GGCCGACCCAAACGAAAA 58.566 55.556 0.00 0.00 0.00 2.29
561 562 1.734748 GGCCGACCCAAACGAAAAA 59.265 52.632 0.00 0.00 0.00 1.94
562 563 0.315886 GGCCGACCCAAACGAAAAAT 59.684 50.000 0.00 0.00 0.00 1.82
563 564 1.540707 GGCCGACCCAAACGAAAAATA 59.459 47.619 0.00 0.00 0.00 1.40
564 565 2.030096 GGCCGACCCAAACGAAAAATAA 60.030 45.455 0.00 0.00 0.00 1.40
565 566 3.239254 GCCGACCCAAACGAAAAATAAG 58.761 45.455 0.00 0.00 0.00 1.73
566 567 3.239254 CCGACCCAAACGAAAAATAAGC 58.761 45.455 0.00 0.00 0.00 3.09
567 568 2.906161 CGACCCAAACGAAAAATAAGCG 59.094 45.455 0.00 0.00 0.00 4.68
568 569 3.239254 GACCCAAACGAAAAATAAGCGG 58.761 45.455 0.00 0.00 0.00 5.52
569 570 2.885894 ACCCAAACGAAAAATAAGCGGA 59.114 40.909 0.00 0.00 0.00 5.54
570 571 3.239254 CCCAAACGAAAAATAAGCGGAC 58.761 45.455 0.00 0.00 0.00 4.79
571 572 3.304794 CCCAAACGAAAAATAAGCGGACA 60.305 43.478 0.00 0.00 0.00 4.02
572 573 4.291783 CCAAACGAAAAATAAGCGGACAA 58.708 39.130 0.00 0.00 0.00 3.18
573 574 4.740695 CCAAACGAAAAATAAGCGGACAAA 59.259 37.500 0.00 0.00 0.00 2.83
574 575 5.404066 CCAAACGAAAAATAAGCGGACAAAT 59.596 36.000 0.00 0.00 0.00 2.32
575 576 6.074034 CCAAACGAAAAATAAGCGGACAAATT 60.074 34.615 0.00 0.00 0.00 1.82
576 577 6.684609 AACGAAAAATAAGCGGACAAATTC 57.315 33.333 0.00 0.00 0.00 2.17
577 578 4.849383 ACGAAAAATAAGCGGACAAATTCG 59.151 37.500 0.00 0.00 41.86 3.34
582 583 2.097728 GCGGACAAATTCGCCGTC 59.902 61.111 13.03 3.09 46.38 4.79
583 584 2.782615 CGGACAAATTCGCCGTCC 59.217 61.111 0.00 0.00 44.79 4.79
584 585 2.782615 GGACAAATTCGCCGTCCG 59.217 61.111 0.00 0.00 39.86 4.79
585 586 2.030958 GGACAAATTCGCCGTCCGT 61.031 57.895 0.00 0.00 39.86 4.69
586 587 1.571215 GGACAAATTCGCCGTCCGTT 61.571 55.000 0.00 0.00 39.86 4.44
587 588 0.236449 GACAAATTCGCCGTCCGTTT 59.764 50.000 0.00 0.00 38.35 3.60
588 589 0.040781 ACAAATTCGCCGTCCGTTTG 60.041 50.000 0.00 0.00 38.28 2.93
589 590 0.727793 CAAATTCGCCGTCCGTTTGG 60.728 55.000 0.00 0.00 38.35 3.28
590 591 0.885596 AAATTCGCCGTCCGTTTGGA 60.886 50.000 0.00 0.00 43.88 3.53
610 611 2.946762 GGCACGTTGGAGTTGCTC 59.053 61.111 0.00 0.00 0.00 4.26
627 628 2.032681 CTAATAGCCGGCCAGCCC 59.967 66.667 26.15 0.00 0.00 5.19
673 675 3.421386 GGGGAAGGGAAGGAGGGC 61.421 72.222 0.00 0.00 0.00 5.19
674 676 2.614013 GGGAAGGGAAGGAGGGCA 60.614 66.667 0.00 0.00 0.00 5.36
680 682 1.755200 AGGGAAGGAGGGCAAAAGTA 58.245 50.000 0.00 0.00 0.00 2.24
747 749 3.200825 CACCATAAGAACACCCCTCTCAT 59.799 47.826 0.00 0.00 0.00 2.90
783 785 2.419739 GCTCTCCTCTCGTCCACCC 61.420 68.421 0.00 0.00 0.00 4.61
784 786 1.755008 CTCTCCTCTCGTCCACCCC 60.755 68.421 0.00 0.00 0.00 4.95
785 787 2.037367 CTCCTCTCGTCCACCCCA 59.963 66.667 0.00 0.00 0.00 4.96
786 788 2.283676 TCCTCTCGTCCACCCCAC 60.284 66.667 0.00 0.00 0.00 4.61
787 789 3.391382 CCTCTCGTCCACCCCACC 61.391 72.222 0.00 0.00 0.00 4.61
788 790 3.760035 CTCTCGTCCACCCCACCG 61.760 72.222 0.00 0.00 0.00 4.94
855 858 0.468029 CAACCACTCCAACCAAGGCT 60.468 55.000 0.00 0.00 0.00 4.58
1179 1184 1.930503 TGTACGTATGCGCCATCAAAG 59.069 47.619 4.18 0.00 42.83 2.77
1241 1255 1.608717 CCTGCCGAGCTGTTAGTCCT 61.609 60.000 0.00 0.00 0.00 3.85
1246 1260 0.457851 CGAGCTGTTAGTCCTCCCAG 59.542 60.000 0.00 0.00 0.00 4.45
1271 1285 1.089920 CCCGCTTTGAACCATCTCTG 58.910 55.000 0.00 0.00 0.00 3.35
1273 1287 0.449388 CGCTTTGAACCATCTCTGCC 59.551 55.000 0.00 0.00 0.00 4.85
1348 1362 2.808543 GCTCGTGAATCTTTGGAGTTGT 59.191 45.455 0.00 0.00 0.00 3.32
1360 1374 1.003580 TGGAGTTGTCCCTGCTTCATC 59.996 52.381 0.00 0.00 43.15 2.92
1365 1379 2.408271 TGTCCCTGCTTCATCATGTC 57.592 50.000 0.00 0.00 0.00 3.06
1375 1389 6.335471 TGCTTCATCATGTCAAATTTCTGT 57.665 33.333 0.00 0.00 0.00 3.41
1377 1391 6.864685 TGCTTCATCATGTCAAATTTCTGTTC 59.135 34.615 0.00 0.00 0.00 3.18
1467 1481 8.034215 TCCAATTTGCATGAATTAAGTACCTTG 58.966 33.333 0.00 0.00 0.00 3.61
1639 1657 6.699575 AGTCCTTCAATGAATTAAATCCCG 57.300 37.500 0.00 0.00 0.00 5.14
1640 1658 5.067805 AGTCCTTCAATGAATTAAATCCCGC 59.932 40.000 0.00 0.00 0.00 6.13
1641 1659 4.340950 TCCTTCAATGAATTAAATCCCGCC 59.659 41.667 0.00 0.00 0.00 6.13
1642 1660 4.099266 CCTTCAATGAATTAAATCCCGCCA 59.901 41.667 0.00 0.00 0.00 5.69
1643 1661 5.395103 CCTTCAATGAATTAAATCCCGCCAA 60.395 40.000 0.00 0.00 0.00 4.52
1644 1662 5.867903 TCAATGAATTAAATCCCGCCAAT 57.132 34.783 0.00 0.00 0.00 3.16
1645 1663 5.599732 TCAATGAATTAAATCCCGCCAATG 58.400 37.500 0.00 0.00 0.00 2.82
1646 1664 3.451141 TGAATTAAATCCCGCCAATGC 57.549 42.857 0.00 0.00 0.00 3.56
1647 1665 3.030291 TGAATTAAATCCCGCCAATGCT 58.970 40.909 0.00 0.00 34.43 3.79
1648 1666 3.450457 TGAATTAAATCCCGCCAATGCTT 59.550 39.130 0.00 0.00 34.43 3.91
1649 1667 4.081198 TGAATTAAATCCCGCCAATGCTTT 60.081 37.500 0.00 0.00 34.43 3.51
1650 1668 3.971245 TTAAATCCCGCCAATGCTTTT 57.029 38.095 0.00 0.00 34.43 2.27
1651 1669 2.385013 AAATCCCGCCAATGCTTTTC 57.615 45.000 0.00 0.00 34.43 2.29
1652 1670 1.265236 AATCCCGCCAATGCTTTTCA 58.735 45.000 0.00 0.00 34.43 2.69
1653 1671 1.265236 ATCCCGCCAATGCTTTTCAA 58.735 45.000 0.00 0.00 34.43 2.69
1654 1672 1.043816 TCCCGCCAATGCTTTTCAAA 58.956 45.000 0.00 0.00 34.43 2.69
1655 1673 1.000731 TCCCGCCAATGCTTTTCAAAG 59.999 47.619 0.00 0.00 39.03 2.77
1656 1674 1.431496 CCGCCAATGCTTTTCAAAGG 58.569 50.000 1.55 0.00 36.53 3.11
1657 1675 1.000731 CCGCCAATGCTTTTCAAAGGA 59.999 47.619 1.55 0.00 40.68 3.36
1658 1676 2.331194 CGCCAATGCTTTTCAAAGGAG 58.669 47.619 1.55 0.00 39.75 3.69
1659 1677 2.071540 GCCAATGCTTTTCAAAGGAGC 58.928 47.619 1.55 0.00 39.75 4.70
1660 1678 2.289257 GCCAATGCTTTTCAAAGGAGCT 60.289 45.455 1.55 0.00 39.75 4.09
1661 1679 3.804759 GCCAATGCTTTTCAAAGGAGCTT 60.805 43.478 1.55 0.00 39.75 3.74
1662 1680 4.561326 GCCAATGCTTTTCAAAGGAGCTTA 60.561 41.667 1.55 0.00 39.75 3.09
1663 1681 5.727434 CCAATGCTTTTCAAAGGAGCTTAT 58.273 37.500 1.55 0.00 39.75 1.73
1664 1682 6.168389 CCAATGCTTTTCAAAGGAGCTTATT 58.832 36.000 1.55 0.00 39.75 1.40
1665 1683 7.322664 CCAATGCTTTTCAAAGGAGCTTATTA 58.677 34.615 1.55 0.00 39.75 0.98
1666 1684 7.983484 CCAATGCTTTTCAAAGGAGCTTATTAT 59.017 33.333 1.55 0.00 39.75 1.28
1667 1685 8.814235 CAATGCTTTTCAAAGGAGCTTATTATG 58.186 33.333 1.55 0.00 39.75 1.90
1668 1686 6.332630 TGCTTTTCAAAGGAGCTTATTATGC 58.667 36.000 1.55 0.00 37.32 3.14
1669 1687 6.071447 TGCTTTTCAAAGGAGCTTATTATGCA 60.071 34.615 0.00 0.00 37.32 3.96
1670 1688 6.813152 GCTTTTCAAAGGAGCTTATTATGCAA 59.187 34.615 0.00 0.00 36.53 4.08
1671 1689 7.493645 GCTTTTCAAAGGAGCTTATTATGCAAT 59.506 33.333 0.00 0.00 36.53 3.56
1672 1690 8.706492 TTTTCAAAGGAGCTTATTATGCAATG 57.294 30.769 0.00 0.00 0.00 2.82
1673 1691 7.643569 TTCAAAGGAGCTTATTATGCAATGA 57.356 32.000 0.00 0.00 0.00 2.57
1674 1692 7.643569 TCAAAGGAGCTTATTATGCAATGAA 57.356 32.000 0.00 0.00 0.00 2.57
1675 1693 7.483307 TCAAAGGAGCTTATTATGCAATGAAC 58.517 34.615 0.00 0.00 0.00 3.18
1676 1694 7.122501 TCAAAGGAGCTTATTATGCAATGAACA 59.877 33.333 0.00 0.00 0.00 3.18
1677 1695 7.592885 AAGGAGCTTATTATGCAATGAACAT 57.407 32.000 0.00 0.00 0.00 2.71
1678 1696 8.696043 AAGGAGCTTATTATGCAATGAACATA 57.304 30.769 0.00 0.00 0.00 2.29
1679 1697 8.696043 AGGAGCTTATTATGCAATGAACATAA 57.304 30.769 0.00 0.00 42.49 1.90
1680 1698 9.305555 AGGAGCTTATTATGCAATGAACATAAT 57.694 29.630 12.21 12.21 46.93 1.28
1681 1699 9.565213 GGAGCTTATTATGCAATGAACATAATC 57.435 33.333 11.20 0.60 43.79 1.75
1682 1700 9.270576 GAGCTTATTATGCAATGAACATAATCG 57.729 33.333 11.20 6.75 43.79 3.34
1683 1701 9.002600 AGCTTATTATGCAATGAACATAATCGA 57.997 29.630 11.20 0.00 43.79 3.59
1684 1702 9.778993 GCTTATTATGCAATGAACATAATCGAT 57.221 29.630 11.20 0.00 43.79 3.59
1691 1709 9.836076 ATGCAATGAACATAATCGATCTTATTG 57.164 29.630 0.00 5.02 0.00 1.90
1692 1710 7.804600 TGCAATGAACATAATCGATCTTATTGC 59.195 33.333 20.86 20.86 43.96 3.56
1693 1711 7.804600 GCAATGAACATAATCGATCTTATTGCA 59.195 33.333 21.77 9.69 43.47 4.08
1694 1712 9.667989 CAATGAACATAATCGATCTTATTGCAA 57.332 29.630 0.00 0.00 0.00 4.08
1704 1722 8.792831 ATCGATCTTATTGCAAAATCAATGTC 57.207 30.769 1.71 0.00 37.27 3.06
1705 1723 7.988737 TCGATCTTATTGCAAAATCAATGTCT 58.011 30.769 1.71 0.00 37.27 3.41
1706 1724 8.461222 TCGATCTTATTGCAAAATCAATGTCTT 58.539 29.630 1.71 0.00 37.27 3.01
1707 1725 9.720667 CGATCTTATTGCAAAATCAATGTCTTA 57.279 29.630 1.71 0.00 37.27 2.10
1715 1733 9.844790 TTGCAAAATCAATGTCTTACTTCATAG 57.155 29.630 0.00 0.00 0.00 2.23
1716 1734 9.230122 TGCAAAATCAATGTCTTACTTCATAGA 57.770 29.630 0.00 0.00 0.00 1.98
1722 1740 9.689976 ATCAATGTCTTACTTCATAGATTCGAG 57.310 33.333 0.00 0.00 0.00 4.04
1723 1741 8.903820 TCAATGTCTTACTTCATAGATTCGAGA 58.096 33.333 0.00 0.00 0.00 4.04
1724 1742 9.179552 CAATGTCTTACTTCATAGATTCGAGAG 57.820 37.037 0.00 0.00 0.00 3.20
1725 1743 8.684386 ATGTCTTACTTCATAGATTCGAGAGA 57.316 34.615 0.00 0.00 39.20 3.10
1740 1758 6.928979 TTCGAGAGAATAGGAGAACAGTAG 57.071 41.667 0.00 0.00 46.92 2.57
1741 1759 4.817464 TCGAGAGAATAGGAGAACAGTAGC 59.183 45.833 0.00 0.00 37.03 3.58
1742 1760 4.023536 CGAGAGAATAGGAGAACAGTAGCC 60.024 50.000 0.00 0.00 0.00 3.93
1743 1761 5.137412 AGAGAATAGGAGAACAGTAGCCT 57.863 43.478 0.00 0.00 34.56 4.58
1744 1762 4.892934 AGAGAATAGGAGAACAGTAGCCTG 59.107 45.833 0.00 0.00 44.68 4.85
1745 1763 4.873010 AGAATAGGAGAACAGTAGCCTGA 58.127 43.478 0.00 0.00 41.50 3.86
1746 1764 4.647399 AGAATAGGAGAACAGTAGCCTGAC 59.353 45.833 0.00 0.00 41.50 3.51
1747 1765 2.310779 AGGAGAACAGTAGCCTGACA 57.689 50.000 0.00 0.00 41.50 3.58
1748 1766 2.609747 AGGAGAACAGTAGCCTGACAA 58.390 47.619 0.00 0.00 41.50 3.18
1749 1767 2.972713 AGGAGAACAGTAGCCTGACAAA 59.027 45.455 0.00 0.00 41.50 2.83
1750 1768 3.067833 GGAGAACAGTAGCCTGACAAAC 58.932 50.000 0.00 0.00 41.50 2.93
1751 1769 3.494398 GGAGAACAGTAGCCTGACAAACA 60.494 47.826 0.00 0.00 41.50 2.83
1752 1770 3.733337 AGAACAGTAGCCTGACAAACAG 58.267 45.455 0.00 0.00 41.50 3.16
1753 1771 3.134804 AGAACAGTAGCCTGACAAACAGT 59.865 43.478 0.00 0.00 44.40 3.55
1764 1782 1.865340 GACAAACAGTCGGTTCAGTCC 59.135 52.381 8.99 0.00 39.29 3.85
1774 1792 1.726853 GGTTCAGTCCGATTCAGGTG 58.273 55.000 0.00 0.00 0.00 4.00
1775 1793 1.079503 GTTCAGTCCGATTCAGGTGC 58.920 55.000 0.00 0.00 0.00 5.01
1776 1794 0.036388 TTCAGTCCGATTCAGGTGCC 60.036 55.000 0.00 0.00 0.00 5.01
1777 1795 0.904865 TCAGTCCGATTCAGGTGCCT 60.905 55.000 0.00 0.00 0.00 4.75
1778 1796 0.824109 CAGTCCGATTCAGGTGCCTA 59.176 55.000 0.00 0.00 0.00 3.93
1779 1797 1.207089 CAGTCCGATTCAGGTGCCTAA 59.793 52.381 0.00 0.00 0.00 2.69
1780 1798 2.119495 AGTCCGATTCAGGTGCCTAAT 58.881 47.619 0.00 0.00 0.00 1.73
1781 1799 2.103263 AGTCCGATTCAGGTGCCTAATC 59.897 50.000 0.00 1.43 0.00 1.75
1782 1800 2.115427 TCCGATTCAGGTGCCTAATCA 58.885 47.619 14.62 1.99 31.37 2.57
1783 1801 2.503765 TCCGATTCAGGTGCCTAATCAA 59.496 45.455 14.62 5.61 31.37 2.57
1784 1802 3.054728 TCCGATTCAGGTGCCTAATCAAA 60.055 43.478 14.62 5.39 31.37 2.69
1785 1803 3.885297 CCGATTCAGGTGCCTAATCAAAT 59.115 43.478 14.62 3.33 31.37 2.32
1786 1804 5.063204 CCGATTCAGGTGCCTAATCAAATA 58.937 41.667 14.62 0.00 31.37 1.40
1787 1805 5.180117 CCGATTCAGGTGCCTAATCAAATAG 59.820 44.000 14.62 0.00 31.37 1.73
1788 1806 5.991606 CGATTCAGGTGCCTAATCAAATAGA 59.008 40.000 14.62 0.00 31.37 1.98
1789 1807 6.483307 CGATTCAGGTGCCTAATCAAATAGAA 59.517 38.462 14.62 0.00 31.37 2.10
1790 1808 7.519008 CGATTCAGGTGCCTAATCAAATAGAAC 60.519 40.741 14.62 0.00 31.37 3.01
1791 1809 5.437060 TCAGGTGCCTAATCAAATAGAACC 58.563 41.667 0.00 0.00 33.24 3.62
1792 1810 4.580580 CAGGTGCCTAATCAAATAGAACCC 59.419 45.833 0.00 0.00 33.39 4.11
1793 1811 4.478686 AGGTGCCTAATCAAATAGAACCCT 59.521 41.667 0.00 0.00 33.39 4.34
1794 1812 5.044105 AGGTGCCTAATCAAATAGAACCCTT 60.044 40.000 0.00 0.00 33.39 3.95
1795 1813 6.159751 AGGTGCCTAATCAAATAGAACCCTTA 59.840 38.462 0.00 0.00 33.39 2.69
1796 1814 7.004691 GGTGCCTAATCAAATAGAACCCTTAT 58.995 38.462 0.00 0.00 0.00 1.73
1797 1815 7.040409 GGTGCCTAATCAAATAGAACCCTTATG 60.040 40.741 0.00 0.00 0.00 1.90
1798 1816 7.004086 TGCCTAATCAAATAGAACCCTTATGG 58.996 38.462 0.00 0.00 41.37 2.74
1799 1817 7.147213 TGCCTAATCAAATAGAACCCTTATGGA 60.147 37.037 0.00 0.00 38.00 3.41
1800 1818 7.890655 GCCTAATCAAATAGAACCCTTATGGAT 59.109 37.037 0.00 0.00 38.00 3.41
1801 1819 9.813826 CCTAATCAAATAGAACCCTTATGGATT 57.186 33.333 0.00 0.00 38.00 3.01
1804 1822 7.346751 TCAAATAGAACCCTTATGGATTTGC 57.653 36.000 11.17 0.00 34.86 3.68
1805 1823 7.125391 TCAAATAGAACCCTTATGGATTTGCT 58.875 34.615 11.17 0.00 34.86 3.91
1806 1824 8.278639 TCAAATAGAACCCTTATGGATTTGCTA 58.721 33.333 11.17 0.00 34.86 3.49
1807 1825 8.571336 CAAATAGAACCCTTATGGATTTGCTAG 58.429 37.037 0.00 0.00 38.00 3.42
1808 1826 5.717119 AGAACCCTTATGGATTTGCTAGT 57.283 39.130 0.00 0.00 38.00 2.57
1809 1827 6.079712 AGAACCCTTATGGATTTGCTAGTT 57.920 37.500 0.00 0.00 38.00 2.24
1810 1828 5.888161 AGAACCCTTATGGATTTGCTAGTTG 59.112 40.000 0.00 0.00 38.00 3.16
1811 1829 5.450818 ACCCTTATGGATTTGCTAGTTGA 57.549 39.130 0.00 0.00 38.00 3.18
1812 1830 6.018433 ACCCTTATGGATTTGCTAGTTGAT 57.982 37.500 0.00 0.00 38.00 2.57
1813 1831 7.149202 ACCCTTATGGATTTGCTAGTTGATA 57.851 36.000 0.00 0.00 38.00 2.15
1814 1832 7.582719 ACCCTTATGGATTTGCTAGTTGATAA 58.417 34.615 0.00 0.00 38.00 1.75
1815 1833 7.721399 ACCCTTATGGATTTGCTAGTTGATAAG 59.279 37.037 0.00 0.00 38.00 1.73
1816 1834 7.175641 CCCTTATGGATTTGCTAGTTGATAAGG 59.824 40.741 0.00 0.00 40.06 2.69
1817 1835 7.721399 CCTTATGGATTTGCTAGTTGATAAGGT 59.279 37.037 0.00 0.00 37.46 3.50
1818 1836 9.778741 CTTATGGATTTGCTAGTTGATAAGGTA 57.221 33.333 0.00 0.00 0.00 3.08
1821 1839 9.646522 ATGGATTTGCTAGTTGATAAGGTAAAT 57.353 29.630 0.00 0.00 0.00 1.40
1827 1845 9.778741 TTGCTAGTTGATAAGGTAAATATCCAG 57.221 33.333 0.00 0.00 0.00 3.86
1828 1846 7.878127 TGCTAGTTGATAAGGTAAATATCCAGC 59.122 37.037 0.00 0.00 0.00 4.85
1829 1847 7.334671 GCTAGTTGATAAGGTAAATATCCAGCC 59.665 40.741 0.00 0.00 0.00 4.85
1830 1848 6.543735 AGTTGATAAGGTAAATATCCAGCCC 58.456 40.000 0.00 0.00 0.00 5.19
1831 1849 6.102615 AGTTGATAAGGTAAATATCCAGCCCA 59.897 38.462 0.00 0.00 0.00 5.36
1832 1850 5.876357 TGATAAGGTAAATATCCAGCCCAC 58.124 41.667 0.00 0.00 0.00 4.61
1833 1851 5.610982 TGATAAGGTAAATATCCAGCCCACT 59.389 40.000 0.00 0.00 0.00 4.00
1834 1852 6.790461 TGATAAGGTAAATATCCAGCCCACTA 59.210 38.462 0.00 0.00 0.00 2.74
1835 1853 5.987019 AAGGTAAATATCCAGCCCACTAA 57.013 39.130 0.00 0.00 0.00 2.24
1836 1854 5.987019 AGGTAAATATCCAGCCCACTAAA 57.013 39.130 0.00 0.00 0.00 1.85
1837 1855 6.530601 AGGTAAATATCCAGCCCACTAAAT 57.469 37.500 0.00 0.00 0.00 1.40
1838 1856 6.306987 AGGTAAATATCCAGCCCACTAAATG 58.693 40.000 0.00 0.00 0.00 2.32
1839 1857 5.048013 GGTAAATATCCAGCCCACTAAATGC 60.048 44.000 0.00 0.00 0.00 3.56
1840 1858 4.459852 AATATCCAGCCCACTAAATGCT 57.540 40.909 0.00 0.00 35.25 3.79
1841 1859 5.582950 AATATCCAGCCCACTAAATGCTA 57.417 39.130 0.00 0.00 33.16 3.49
1842 1860 3.498774 ATCCAGCCCACTAAATGCTAG 57.501 47.619 0.00 0.00 33.16 3.42
1843 1861 1.490490 TCCAGCCCACTAAATGCTAGG 59.510 52.381 0.00 0.00 33.16 3.02
1844 1862 1.312815 CAGCCCACTAAATGCTAGGC 58.687 55.000 0.00 0.00 40.79 3.93
1845 1863 0.179045 AGCCCACTAAATGCTAGGCG 60.179 55.000 0.00 0.00 45.16 5.52
1846 1864 0.463833 GCCCACTAAATGCTAGGCGT 60.464 55.000 0.00 0.00 0.00 5.68
1847 1865 1.202604 GCCCACTAAATGCTAGGCGTA 60.203 52.381 0.00 0.00 0.00 4.42
1848 1866 2.743838 GCCCACTAAATGCTAGGCGTAA 60.744 50.000 0.00 0.00 0.00 3.18
1849 1867 3.740115 CCCACTAAATGCTAGGCGTAAT 58.260 45.455 0.00 0.00 0.00 1.89
1850 1868 3.498397 CCCACTAAATGCTAGGCGTAATG 59.502 47.826 0.00 0.00 0.00 1.90
1851 1869 4.377021 CCACTAAATGCTAGGCGTAATGA 58.623 43.478 0.00 0.00 0.00 2.57
1852 1870 4.449068 CCACTAAATGCTAGGCGTAATGAG 59.551 45.833 0.00 0.00 0.00 2.90
1853 1871 4.449068 CACTAAATGCTAGGCGTAATGAGG 59.551 45.833 0.00 0.00 0.00 3.86
1854 1872 3.838244 AAATGCTAGGCGTAATGAGGA 57.162 42.857 0.00 0.00 0.00 3.71
1855 1873 4.357918 AAATGCTAGGCGTAATGAGGAT 57.642 40.909 0.00 0.00 0.00 3.24
1856 1874 5.483685 AAATGCTAGGCGTAATGAGGATA 57.516 39.130 0.00 0.00 0.00 2.59
1857 1875 5.483685 AATGCTAGGCGTAATGAGGATAA 57.516 39.130 0.00 0.00 0.00 1.75
1858 1876 4.521130 TGCTAGGCGTAATGAGGATAAG 57.479 45.455 0.00 0.00 0.00 1.73
1859 1877 3.258372 TGCTAGGCGTAATGAGGATAAGG 59.742 47.826 0.00 0.00 0.00 2.69
1860 1878 3.368531 GCTAGGCGTAATGAGGATAAGGG 60.369 52.174 0.00 0.00 0.00 3.95
1861 1879 1.348036 AGGCGTAATGAGGATAAGGGC 59.652 52.381 0.00 0.00 0.00 5.19
1862 1880 1.610886 GGCGTAATGAGGATAAGGGCC 60.611 57.143 0.00 0.00 0.00 5.80
1863 1881 1.610886 GCGTAATGAGGATAAGGGCCC 60.611 57.143 16.46 16.46 0.00 5.80
1864 1882 1.003233 CGTAATGAGGATAAGGGCCCC 59.997 57.143 21.43 1.70 0.00 5.80
1865 1883 1.354705 GTAATGAGGATAAGGGCCCCC 59.645 57.143 21.43 13.21 0.00 5.40
1866 1884 0.329434 AATGAGGATAAGGGCCCCCA 60.329 55.000 21.43 6.81 38.92 4.96
1867 1885 0.329434 ATGAGGATAAGGGCCCCCAA 60.329 55.000 21.43 4.01 38.92 4.12
1868 1886 0.553862 TGAGGATAAGGGCCCCCAAA 60.554 55.000 21.43 0.82 38.92 3.28
1869 1887 0.634465 GAGGATAAGGGCCCCCAAAA 59.366 55.000 21.43 0.00 38.92 2.44
1870 1888 1.007842 GAGGATAAGGGCCCCCAAAAA 59.992 52.381 21.43 0.00 38.92 1.94
1898 1916 9.813080 CTTCTTTTCGTTCTATGAACTTTAAGG 57.187 33.333 8.51 0.00 0.00 2.69
1899 1917 8.897872 TCTTTTCGTTCTATGAACTTTAAGGT 57.102 30.769 8.51 0.00 0.00 3.50
1900 1918 8.770828 TCTTTTCGTTCTATGAACTTTAAGGTG 58.229 33.333 8.51 0.00 0.00 4.00
1955 1975 4.394439 TTTTCCTTGTTACTTGGTTGGC 57.606 40.909 0.00 0.00 0.00 4.52
1976 1996 8.682710 GTTGGCTTGATGTAACAATAATAAGGA 58.317 33.333 0.00 0.00 0.00 3.36
1977 1997 8.815565 TGGCTTGATGTAACAATAATAAGGAA 57.184 30.769 0.00 0.00 0.00 3.36
2305 2326 7.684317 TGGAGTATGTTCCAGAATTGGTATA 57.316 36.000 0.00 0.00 45.26 1.47
2341 2362 1.276989 AGACCGTCCAATCGCCTAAAA 59.723 47.619 0.00 0.00 0.00 1.52
2348 2369 5.107065 CCGTCCAATCGCCTAAAATCTTATC 60.107 44.000 0.00 0.00 0.00 1.75
2444 2477 3.122613 CACAGTTCGATGAGCAGAAAGAC 59.877 47.826 0.00 0.00 0.00 3.01
2515 2548 1.201647 TCCTAGCGCAGTAAGTGACAC 59.798 52.381 11.47 0.00 0.00 3.67
2550 2583 0.317160 TCTCTTGCTTTCGCTCCGAA 59.683 50.000 0.00 0.00 44.28 4.30
2626 2659 1.202806 TCCTTGAAGCAACTGGACAGG 60.203 52.381 4.14 0.00 0.00 4.00
2768 2801 5.395486 GTGCTCGAGTGTTTTTAATGACAAC 59.605 40.000 15.13 0.00 0.00 3.32
2816 2856 1.862123 CGTCTGTGCACCATGTGAC 59.138 57.895 15.69 12.93 35.23 3.67
2930 2970 3.622612 GTGCCAAAAACTCTGCAAAACAT 59.377 39.130 0.00 0.00 35.16 2.71
2957 2997 2.369394 CTGTCCATGGGTTTTAGCTCC 58.631 52.381 13.02 0.00 0.00 4.70
3052 3092 8.317679 AGTCAGTGCTTGATAATAATATCCTCC 58.682 37.037 0.00 0.00 37.68 4.30
3187 3227 6.795399 TGAAAAATCACTCTTCAAGGTGTTC 58.205 36.000 6.07 4.17 35.26 3.18
3203 3243 4.103153 AGGTGTTCAATGGAAGTTCTCTGA 59.897 41.667 2.25 0.88 32.62 3.27
3329 3374 5.941555 TGTTTTCCCCAACAAAATACTGT 57.058 34.783 0.00 0.00 33.60 3.55
3330 3375 7.604657 ATGTTTTCCCCAACAAAATACTGTA 57.395 32.000 0.00 0.00 40.07 2.74
3366 3411 8.579863 GTGCCCTTGCTAATAATGATATCTTTT 58.420 33.333 8.95 3.47 38.71 2.27
3558 3606 6.173339 TGAGCTGGAAGAATTAGGTACAAAG 58.827 40.000 0.00 0.00 34.07 2.77
3771 3823 4.643334 TCTGCCACTTGTACTCACGTATAT 59.357 41.667 0.00 0.00 0.00 0.86
3826 3878 5.548406 ACGGTGTAATATTCTAGGGAATGC 58.452 41.667 0.00 0.00 41.66 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.616628 AGCCGGAGAAGAACCCCAT 60.617 57.895 5.05 0.00 0.00 4.00
1 2 2.203938 AGCCGGAGAAGAACCCCA 60.204 61.111 5.05 0.00 0.00 4.96
2 3 2.585153 GAGCCGGAGAAGAACCCC 59.415 66.667 5.05 0.00 0.00 4.95
3 4 2.585153 GGAGCCGGAGAAGAACCC 59.415 66.667 5.05 0.00 0.00 4.11
4 5 2.184579 CGGAGCCGGAGAAGAACC 59.815 66.667 5.05 0.00 35.56 3.62
15 16 4.388499 TTTGTCGGAGCCGGAGCC 62.388 66.667 5.05 3.82 41.25 4.70
16 17 2.815647 CTTTGTCGGAGCCGGAGC 60.816 66.667 5.05 0.00 40.25 4.70
17 18 2.815647 GCTTTGTCGGAGCCGGAG 60.816 66.667 5.05 4.02 40.25 4.63
22 23 2.335712 CCCTTGGCTTTGTCGGAGC 61.336 63.158 0.00 0.00 39.41 4.70
23 24 2.335712 GCCCTTGGCTTTGTCGGAG 61.336 63.158 0.00 0.00 46.69 4.63
24 25 2.282180 GCCCTTGGCTTTGTCGGA 60.282 61.111 0.00 0.00 46.69 4.55
40 41 4.432741 GGAGAGGGGTGGCCTTGC 62.433 72.222 3.32 0.00 0.00 4.01
41 42 3.732849 GGGAGAGGGGTGGCCTTG 61.733 72.222 3.32 0.00 0.00 3.61
65 66 4.845580 ATGAGAAGGCGCCGGCAG 62.846 66.667 28.98 20.12 42.47 4.85
66 67 4.838152 GATGAGAAGGCGCCGGCA 62.838 66.667 28.98 17.80 42.47 5.69
74 75 2.419198 CCTCGGCCGATGAGAAGG 59.581 66.667 31.19 21.48 35.43 3.46
75 76 2.279784 GCCTCGGCCGATGAGAAG 60.280 66.667 31.27 17.76 35.43 2.85
76 77 3.074369 TGCCTCGGCCGATGAGAA 61.074 61.111 31.27 14.99 41.09 2.87
77 78 3.531207 CTGCCTCGGCCGATGAGA 61.531 66.667 31.27 16.57 41.09 3.27
78 79 3.842923 ACTGCCTCGGCCGATGAG 61.843 66.667 31.27 25.45 41.09 2.90
79 80 4.147449 CACTGCCTCGGCCGATGA 62.147 66.667 31.27 16.33 41.09 2.92
108 109 4.320456 ACTCCGCCTGGTGCACTG 62.320 66.667 17.98 9.97 41.33 3.66
109 110 4.320456 CACTCCGCCTGGTGCACT 62.320 66.667 17.98 0.00 41.33 4.40
121 122 4.648626 TGCTGCCAGTGCCACTCC 62.649 66.667 0.00 0.00 36.33 3.85
122 123 3.360340 GTGCTGCCAGTGCCACTC 61.360 66.667 0.00 0.00 36.33 3.51
123 124 4.962836 GGTGCTGCCAGTGCCACT 62.963 66.667 0.00 0.00 37.17 4.00
134 135 4.803426 GAGAGGGACGCGGTGCTG 62.803 72.222 12.47 0.00 0.00 4.41
138 139 3.736224 TAGGGAGAGGGACGCGGT 61.736 66.667 12.47 0.00 0.00 5.68
139 140 3.217743 GTAGGGAGAGGGACGCGG 61.218 72.222 12.47 0.00 0.00 6.46
140 141 3.217743 GGTAGGGAGAGGGACGCG 61.218 72.222 3.53 3.53 0.00 6.01
141 142 2.838693 GGGTAGGGAGAGGGACGC 60.839 72.222 0.00 0.00 0.00 5.19
142 143 2.518825 CGGGTAGGGAGAGGGACG 60.519 72.222 0.00 0.00 0.00 4.79
143 144 2.021318 ATCCGGGTAGGGAGAGGGAC 62.021 65.000 0.00 0.00 40.02 4.46
144 145 1.703966 ATCCGGGTAGGGAGAGGGA 60.704 63.158 0.00 0.00 40.02 4.20
145 146 1.534235 CATCCGGGTAGGGAGAGGG 60.534 68.421 0.00 0.00 40.02 4.30
146 147 1.115930 CACATCCGGGTAGGGAGAGG 61.116 65.000 0.00 0.00 40.02 3.69
147 148 0.106167 TCACATCCGGGTAGGGAGAG 60.106 60.000 0.00 0.00 40.02 3.20
148 149 0.396695 GTCACATCCGGGTAGGGAGA 60.397 60.000 0.00 0.00 40.02 3.71
149 150 1.400530 GGTCACATCCGGGTAGGGAG 61.401 65.000 0.00 0.00 40.02 4.30
150 151 1.382146 GGTCACATCCGGGTAGGGA 60.382 63.158 0.00 0.00 41.52 4.20
151 152 2.440817 GGGTCACATCCGGGTAGGG 61.441 68.421 0.00 0.00 41.52 3.53
152 153 1.382695 AGGGTCACATCCGGGTAGG 60.383 63.158 0.00 0.00 42.97 3.18
153 154 1.823295 CAGGGTCACATCCGGGTAG 59.177 63.158 0.00 0.00 0.00 3.18
154 155 2.363975 GCAGGGTCACATCCGGGTA 61.364 63.158 0.00 0.00 0.00 3.69
155 156 3.717294 GCAGGGTCACATCCGGGT 61.717 66.667 0.00 0.00 0.00 5.28
156 157 4.489771 GGCAGGGTCACATCCGGG 62.490 72.222 0.00 0.00 0.00 5.73
157 158 4.838152 CGGCAGGGTCACATCCGG 62.838 72.222 0.00 0.00 36.73 5.14
159 160 4.408821 TGCGGCAGGGTCACATCC 62.409 66.667 0.00 0.00 0.00 3.51
160 161 3.127533 GTGCGGCAGGGTCACATC 61.128 66.667 1.18 0.00 0.00 3.06
172 173 2.176546 CAAATGCCAGTCGTGCGG 59.823 61.111 0.00 0.00 0.00 5.69
173 174 1.647545 ATCCAAATGCCAGTCGTGCG 61.648 55.000 0.00 0.00 0.00 5.34
174 175 0.099436 GATCCAAATGCCAGTCGTGC 59.901 55.000 0.00 0.00 0.00 5.34
175 176 0.734889 GGATCCAAATGCCAGTCGTG 59.265 55.000 6.95 0.00 0.00 4.35
176 177 0.744414 CGGATCCAAATGCCAGTCGT 60.744 55.000 13.41 0.00 0.00 4.34
177 178 1.439353 CCGGATCCAAATGCCAGTCG 61.439 60.000 13.41 0.00 0.00 4.18
178 179 0.107214 TCCGGATCCAAATGCCAGTC 60.107 55.000 13.41 0.00 0.00 3.51
179 180 0.107017 CTCCGGATCCAAATGCCAGT 60.107 55.000 13.41 0.00 0.00 4.00
180 181 0.181114 TCTCCGGATCCAAATGCCAG 59.819 55.000 13.41 0.00 0.00 4.85
181 182 0.181114 CTCTCCGGATCCAAATGCCA 59.819 55.000 13.41 0.00 0.00 4.92
182 183 0.536006 CCTCTCCGGATCCAAATGCC 60.536 60.000 13.41 0.00 33.16 4.40
183 184 0.469917 TCCTCTCCGGATCCAAATGC 59.530 55.000 13.41 0.00 36.69 3.56
194 195 3.917760 GCACCGGGATCCTCTCCG 61.918 72.222 12.58 6.42 46.01 4.63
195 196 3.551407 GGCACCGGGATCCTCTCC 61.551 72.222 12.58 2.68 44.11 3.71
196 197 3.917760 CGGCACCGGGATCCTCTC 61.918 72.222 12.58 0.00 35.56 3.20
230 231 4.514577 CCTCCGTGTGCGCCCTAG 62.515 72.222 4.18 0.00 36.67 3.02
238 239 4.742201 CCGCACCTCCTCCGTGTG 62.742 72.222 0.00 0.00 40.61 3.82
290 291 4.547905 CATCGTACGCGGCCTCGT 62.548 66.667 25.78 25.78 45.49 4.18
291 292 4.547905 ACATCGTACGCGGCCTCG 62.548 66.667 14.81 14.81 38.89 4.63
292 293 2.654404 GACATCGTACGCGGCCTC 60.654 66.667 12.47 0.00 38.89 4.70
293 294 4.547905 CGACATCGTACGCGGCCT 62.548 66.667 12.47 0.00 38.89 5.19
294 295 4.541482 TCGACATCGTACGCGGCC 62.541 66.667 12.47 0.00 40.80 6.13
295 296 3.310251 GTCGACATCGTACGCGGC 61.310 66.667 12.47 6.09 40.80 6.53
296 297 1.650536 GAGTCGACATCGTACGCGG 60.651 63.158 19.50 7.44 40.80 6.46
297 298 1.992118 CGAGTCGACATCGTACGCG 60.992 63.158 19.50 3.53 40.80 6.01
298 299 2.277503 GCGAGTCGACATCGTACGC 61.278 63.158 26.57 22.30 42.13 4.42
299 300 1.650536 GGCGAGTCGACATCGTACG 60.651 63.158 26.57 9.53 42.13 3.67
300 301 1.298190 GGGCGAGTCGACATCGTAC 60.298 63.158 22.12 21.52 42.13 3.67
301 302 1.307355 TTGGGCGAGTCGACATCGTA 61.307 55.000 22.12 16.55 42.13 3.43
302 303 1.945354 ATTGGGCGAGTCGACATCGT 61.945 55.000 22.12 12.47 42.13 3.73
303 304 0.806102 AATTGGGCGAGTCGACATCG 60.806 55.000 22.12 23.94 43.00 3.84
304 305 0.652592 CAATTGGGCGAGTCGACATC 59.347 55.000 22.12 11.22 36.10 3.06
305 306 0.744414 CCAATTGGGCGAGTCGACAT 60.744 55.000 22.12 2.51 36.10 3.06
306 307 1.375396 CCAATTGGGCGAGTCGACA 60.375 57.895 22.12 13.38 36.10 4.35
307 308 1.079405 TCCAATTGGGCGAGTCGAC 60.079 57.895 24.29 14.88 36.21 4.20
308 309 1.079405 GTCCAATTGGGCGAGTCGA 60.079 57.895 24.29 0.00 36.21 4.20
309 310 0.673644 AAGTCCAATTGGGCGAGTCG 60.674 55.000 22.99 8.54 46.49 4.18
310 311 0.804989 CAAGTCCAATTGGGCGAGTC 59.195 55.000 22.99 7.77 46.49 3.36
311 312 0.110486 ACAAGTCCAATTGGGCGAGT 59.890 50.000 22.99 21.05 46.49 4.18
312 313 1.068333 CAACAAGTCCAATTGGGCGAG 60.068 52.381 22.99 20.42 46.49 5.03
313 314 0.958091 CAACAAGTCCAATTGGGCGA 59.042 50.000 22.99 1.41 46.49 5.54
314 315 0.038343 CCAACAAGTCCAATTGGGCG 60.038 55.000 22.99 12.60 46.49 6.13
315 316 1.047801 ACCAACAAGTCCAATTGGGC 58.952 50.000 21.91 21.91 46.03 5.36
316 317 2.288152 CGAACCAACAAGTCCAATTGGG 60.288 50.000 24.29 10.60 46.03 4.12
317 318 2.862140 GCGAACCAACAAGTCCAATTGG 60.862 50.000 19.08 19.08 46.95 3.16
318 319 2.393764 GCGAACCAACAAGTCCAATTG 58.606 47.619 0.00 0.00 36.22 2.32
319 320 1.339929 GGCGAACCAACAAGTCCAATT 59.660 47.619 0.00 0.00 35.26 2.32
320 321 0.958822 GGCGAACCAACAAGTCCAAT 59.041 50.000 0.00 0.00 35.26 3.16
321 322 0.106918 AGGCGAACCAACAAGTCCAA 60.107 50.000 0.00 0.00 39.06 3.53
322 323 0.106918 AAGGCGAACCAACAAGTCCA 60.107 50.000 0.00 0.00 39.06 4.02
323 324 0.591659 GAAGGCGAACCAACAAGTCC 59.408 55.000 0.00 0.00 39.06 3.85
324 325 0.234884 CGAAGGCGAACCAACAAGTC 59.765 55.000 0.00 0.00 40.82 3.01
325 326 0.179067 TCGAAGGCGAACCAACAAGT 60.179 50.000 0.00 0.00 44.78 3.16
326 327 2.612200 TCGAAGGCGAACCAACAAG 58.388 52.632 0.00 0.00 44.78 3.16
327 328 4.859400 TCGAAGGCGAACCAACAA 57.141 50.000 0.00 0.00 44.78 2.83
335 336 4.116328 CCTCGTGCTCGAAGGCGA 62.116 66.667 12.41 5.10 45.61 5.54
336 337 4.116328 TCCTCGTGCTCGAAGGCG 62.116 66.667 12.41 0.41 45.61 5.52
337 338 2.202676 CTCCTCGTGCTCGAAGGC 60.203 66.667 12.41 0.00 45.61 4.35
338 339 2.492090 CCTCCTCGTGCTCGAAGG 59.508 66.667 12.41 12.71 45.61 3.46
339 340 2.202676 GCCTCCTCGTGCTCGAAG 60.203 66.667 12.41 6.38 45.61 3.79
340 341 4.116328 CGCCTCCTCGTGCTCGAA 62.116 66.667 12.41 0.00 45.61 3.71
342 343 4.544689 CTCGCCTCCTCGTGCTCG 62.545 72.222 0.81 0.81 38.55 5.03
343 344 4.200283 CCTCGCCTCCTCGTGCTC 62.200 72.222 0.00 0.00 0.00 4.26
369 370 2.244436 TACGGACGACTTCGCGGAAG 62.244 60.000 6.13 11.39 44.37 3.46
370 371 2.244436 CTACGGACGACTTCGCGGAA 62.244 60.000 6.13 0.00 44.43 4.30
371 372 2.741985 TACGGACGACTTCGCGGA 60.742 61.111 6.13 0.00 44.43 5.54
372 373 2.277120 CTACGGACGACTTCGCGG 60.277 66.667 6.13 0.00 44.43 6.46
373 374 2.943034 GCTACGGACGACTTCGCG 60.943 66.667 0.00 0.00 44.43 5.87
374 375 1.583194 GAGCTACGGACGACTTCGC 60.583 63.158 0.00 0.00 44.43 4.70
375 376 1.296722 CGAGCTACGGACGACTTCG 60.297 63.158 0.00 0.00 40.93 3.79
376 377 4.666728 CGAGCTACGGACGACTTC 57.333 61.111 0.00 0.00 38.46 3.01
403 404 3.615509 TAAAGCCGGCCACGAAGGG 62.616 63.158 26.15 0.00 44.60 3.95
404 405 1.029947 ATTAAAGCCGGCCACGAAGG 61.030 55.000 26.15 0.00 44.60 3.46
405 406 0.098728 CATTAAAGCCGGCCACGAAG 59.901 55.000 26.15 5.89 44.60 3.79
406 407 0.606944 ACATTAAAGCCGGCCACGAA 60.607 50.000 26.15 13.16 44.60 3.85
407 408 0.606944 AACATTAAAGCCGGCCACGA 60.607 50.000 26.15 7.86 44.60 4.35
408 409 0.242555 AAACATTAAAGCCGGCCACG 59.757 50.000 26.15 8.66 40.55 4.94
409 410 1.000394 ACAAACATTAAAGCCGGCCAC 60.000 47.619 26.15 0.00 0.00 5.01
410 411 1.333177 ACAAACATTAAAGCCGGCCA 58.667 45.000 26.15 5.71 0.00 5.36
411 412 2.448926 AACAAACATTAAAGCCGGCC 57.551 45.000 26.15 5.07 0.00 6.13
412 413 4.804608 AAAAACAAACATTAAAGCCGGC 57.195 36.364 21.89 21.89 0.00 6.13
413 414 9.376171 GAAAATAAAAACAAACATTAAAGCCGG 57.624 29.630 0.00 0.00 0.00 6.13
414 415 9.086996 CGAAAATAAAAACAAACATTAAAGCCG 57.913 29.630 0.00 0.00 0.00 5.52
458 459 2.082733 TTTTAACGACGCGCGAAAAA 57.917 40.000 39.36 26.39 44.57 1.94
459 460 1.963883 CATTTTAACGACGCGCGAAAA 59.036 42.857 39.36 29.48 44.57 2.29
460 461 1.582590 CATTTTAACGACGCGCGAAA 58.417 45.000 39.36 24.75 44.57 3.46
461 462 0.179245 CCATTTTAACGACGCGCGAA 60.179 50.000 39.36 19.09 44.57 4.70
462 463 1.416820 CCATTTTAACGACGCGCGA 59.583 52.632 39.36 11.25 44.57 5.87
464 465 0.519792 GACCCATTTTAACGACGCGC 60.520 55.000 5.73 0.00 0.00 6.86
465 466 0.246989 CGACCCATTTTAACGACGCG 60.247 55.000 3.53 3.53 0.00 6.01
466 467 1.070038 TCGACCCATTTTAACGACGC 58.930 50.000 0.00 0.00 0.00 5.19
467 468 2.159801 GGTTCGACCCATTTTAACGACG 60.160 50.000 0.00 0.00 32.89 5.12
468 469 2.807392 TGGTTCGACCCATTTTAACGAC 59.193 45.455 0.00 0.00 37.50 4.34
469 470 3.068560 CTGGTTCGACCCATTTTAACGA 58.931 45.455 0.63 0.00 37.50 3.85
470 471 2.413634 GCTGGTTCGACCCATTTTAACG 60.414 50.000 0.63 0.00 37.50 3.18
471 472 2.413634 CGCTGGTTCGACCCATTTTAAC 60.414 50.000 0.63 0.00 37.50 2.01
472 473 1.807742 CGCTGGTTCGACCCATTTTAA 59.192 47.619 0.63 0.00 37.50 1.52
473 474 1.270947 ACGCTGGTTCGACCCATTTTA 60.271 47.619 0.63 0.00 37.50 1.52
474 475 0.536460 ACGCTGGTTCGACCCATTTT 60.536 50.000 0.63 0.00 37.50 1.82
475 476 0.536460 AACGCTGGTTCGACCCATTT 60.536 50.000 0.63 0.00 37.50 2.32
476 477 1.072505 AACGCTGGTTCGACCCATT 59.927 52.632 0.63 0.00 37.50 3.16
477 478 1.671054 CAACGCTGGTTCGACCCAT 60.671 57.895 0.63 0.00 37.50 4.00
478 479 2.280524 CAACGCTGGTTCGACCCA 60.281 61.111 0.27 0.27 37.50 4.51
479 480 3.047877 CCAACGCTGGTTCGACCC 61.048 66.667 0.00 0.00 37.50 4.46
480 481 2.029964 TCCAACGCTGGTTCGACC 59.970 61.111 4.46 0.00 43.97 4.79
481 482 2.654912 CGTCCAACGCTGGTTCGAC 61.655 63.158 15.74 2.63 43.97 4.20
482 483 2.355363 CGTCCAACGCTGGTTCGA 60.355 61.111 15.74 0.00 43.97 3.71
498 499 3.875039 TTTGGATCGGCGCATGCG 61.875 61.111 34.83 34.83 44.10 4.73
499 500 2.278142 GTTTGGATCGGCGCATGC 60.278 61.111 10.83 7.91 41.71 4.06
500 501 2.023181 CGTTTGGATCGGCGCATG 59.977 61.111 10.83 0.00 0.00 4.06
501 502 2.435938 ACGTTTGGATCGGCGCAT 60.436 55.556 10.83 0.00 0.00 4.73
502 503 3.418913 CACGTTTGGATCGGCGCA 61.419 61.111 10.83 0.00 0.00 6.09
511 512 1.157870 ACGTCTGCTTCCACGTTTGG 61.158 55.000 0.00 0.00 46.93 3.28
512 513 2.307363 ACGTCTGCTTCCACGTTTG 58.693 52.632 0.00 0.00 46.93 2.93
513 514 4.848685 ACGTCTGCTTCCACGTTT 57.151 50.000 0.00 0.00 46.93 3.60
516 517 1.594293 ACCAACGTCTGCTTCCACG 60.594 57.895 0.00 0.00 41.90 4.94
517 518 0.814010 ACACCAACGTCTGCTTCCAC 60.814 55.000 0.00 0.00 0.00 4.02
518 519 0.531974 GACACCAACGTCTGCTTCCA 60.532 55.000 0.00 0.00 32.92 3.53
519 520 1.228657 GGACACCAACGTCTGCTTCC 61.229 60.000 0.00 0.00 36.12 3.46
520 521 0.531974 TGGACACCAACGTCTGCTTC 60.532 55.000 0.00 0.00 36.12 3.86
521 522 0.108585 ATGGACACCAACGTCTGCTT 59.891 50.000 0.00 0.00 36.95 3.91
522 523 0.320771 GATGGACACCAACGTCTGCT 60.321 55.000 0.00 0.00 36.95 4.24
523 524 1.626654 CGATGGACACCAACGTCTGC 61.627 60.000 11.25 0.00 43.21 4.26
524 525 1.014044 CCGATGGACACCAACGTCTG 61.014 60.000 16.44 1.59 45.99 3.51
525 526 1.292223 CCGATGGACACCAACGTCT 59.708 57.895 16.44 0.00 45.99 4.18
526 527 1.740296 CCCGATGGACACCAACGTC 60.740 63.158 16.44 0.90 45.99 4.34
527 528 2.345991 CCCGATGGACACCAACGT 59.654 61.111 16.44 0.00 45.99 3.99
528 529 3.124921 GCCCGATGGACACCAACG 61.125 66.667 12.23 12.23 46.77 4.10
529 530 2.750237 GGCCCGATGGACACCAAC 60.750 66.667 0.00 0.00 40.65 3.77
530 531 4.402528 CGGCCCGATGGACACCAA 62.403 66.667 0.00 0.00 41.25 3.67
532 533 4.832608 GTCGGCCCGATGGACACC 62.833 72.222 10.04 0.00 41.25 4.16
533 534 4.832608 GGTCGGCCCGATGGACAC 62.833 72.222 10.04 0.00 41.25 3.67
543 544 0.315886 ATTTTTCGTTTGGGTCGGCC 59.684 50.000 0.00 0.00 0.00 6.13
544 545 2.993449 TATTTTTCGTTTGGGTCGGC 57.007 45.000 0.00 0.00 0.00 5.54
545 546 3.239254 GCTTATTTTTCGTTTGGGTCGG 58.761 45.455 0.00 0.00 0.00 4.79
546 547 2.906161 CGCTTATTTTTCGTTTGGGTCG 59.094 45.455 0.00 0.00 0.00 4.79
547 548 3.058085 TCCGCTTATTTTTCGTTTGGGTC 60.058 43.478 0.00 0.00 0.00 4.46
548 549 2.885894 TCCGCTTATTTTTCGTTTGGGT 59.114 40.909 0.00 0.00 0.00 4.51
549 550 3.239254 GTCCGCTTATTTTTCGTTTGGG 58.761 45.455 0.00 0.00 0.00 4.12
550 551 3.891324 TGTCCGCTTATTTTTCGTTTGG 58.109 40.909 0.00 0.00 0.00 3.28
551 552 5.874892 TTTGTCCGCTTATTTTTCGTTTG 57.125 34.783 0.00 0.00 0.00 2.93
552 553 6.129300 CGAATTTGTCCGCTTATTTTTCGTTT 60.129 34.615 0.00 0.00 31.49 3.60
553 554 5.341196 CGAATTTGTCCGCTTATTTTTCGTT 59.659 36.000 0.00 0.00 31.49 3.85
554 555 4.849383 CGAATTTGTCCGCTTATTTTTCGT 59.151 37.500 0.00 0.00 31.49 3.85
555 556 4.258860 GCGAATTTGTCCGCTTATTTTTCG 60.259 41.667 0.00 0.00 46.96 3.46
556 557 5.113555 GCGAATTTGTCCGCTTATTTTTC 57.886 39.130 0.00 0.00 46.96 2.29
567 568 1.571215 AACGGACGGCGAATTTGTCC 61.571 55.000 16.62 8.05 46.91 4.02
568 569 0.236449 AAACGGACGGCGAATTTGTC 59.764 50.000 16.62 0.00 0.00 3.18
569 570 0.040781 CAAACGGACGGCGAATTTGT 60.041 50.000 16.62 1.09 0.00 2.83
570 571 0.727793 CCAAACGGACGGCGAATTTG 60.728 55.000 16.62 16.72 0.00 2.32
571 572 0.885596 TCCAAACGGACGGCGAATTT 60.886 50.000 16.62 5.24 0.00 1.82
572 573 0.675522 ATCCAAACGGACGGCGAATT 60.676 50.000 16.62 0.00 34.62 2.17
573 574 1.078708 ATCCAAACGGACGGCGAAT 60.079 52.632 16.62 0.00 34.62 3.34
574 575 1.738830 GATCCAAACGGACGGCGAA 60.739 57.895 16.62 0.00 34.62 4.70
575 576 2.125832 GATCCAAACGGACGGCGA 60.126 61.111 16.62 0.00 34.62 5.54
576 577 3.550992 CGATCCAAACGGACGGCG 61.551 66.667 4.80 4.80 34.62 6.46
583 584 1.154488 CAACGTGCCGATCCAAACG 60.154 57.895 7.05 7.05 41.64 3.60
584 585 1.209127 CCAACGTGCCGATCCAAAC 59.791 57.895 0.00 0.00 0.00 2.93
585 586 0.953471 CTCCAACGTGCCGATCCAAA 60.953 55.000 0.00 0.00 0.00 3.28
586 587 1.375396 CTCCAACGTGCCGATCCAA 60.375 57.895 0.00 0.00 0.00 3.53
587 588 2.107041 AACTCCAACGTGCCGATCCA 62.107 55.000 0.00 0.00 0.00 3.41
588 589 1.375523 AACTCCAACGTGCCGATCC 60.376 57.895 0.00 0.00 0.00 3.36
589 590 1.787847 CAACTCCAACGTGCCGATC 59.212 57.895 0.00 0.00 0.00 3.69
590 591 2.325082 GCAACTCCAACGTGCCGAT 61.325 57.895 0.00 0.00 0.00 4.18
591 592 2.970324 GCAACTCCAACGTGCCGA 60.970 61.111 0.00 0.00 0.00 5.54
592 593 2.954753 GAGCAACTCCAACGTGCCG 61.955 63.158 0.00 0.00 0.00 5.69
593 594 0.320421 TAGAGCAACTCCAACGTGCC 60.320 55.000 0.00 0.00 0.00 5.01
594 595 1.508632 TTAGAGCAACTCCAACGTGC 58.491 50.000 0.00 0.00 0.00 5.34
608 609 1.004440 GGCTGGCCGGCTATTAGAG 60.004 63.158 34.76 9.24 34.85 2.43
609 610 2.516888 GGGCTGGCCGGCTATTAGA 61.517 63.158 34.76 2.49 38.46 2.10
610 611 2.032681 GGGCTGGCCGGCTATTAG 59.967 66.667 34.76 19.53 38.46 1.73
619 620 4.740822 AATGGTGACGGGCTGGCC 62.741 66.667 10.75 10.75 0.00 5.36
649 650 1.010795 CCTTCCCTTCCCCCTGATTT 58.989 55.000 0.00 0.00 0.00 2.17
673 675 6.366332 CAGGTTCTGCTACTAGTGTACTTTTG 59.634 42.308 5.39 0.00 0.00 2.44
674 676 6.456501 CAGGTTCTGCTACTAGTGTACTTTT 58.543 40.000 5.39 0.00 0.00 2.27
788 790 0.251608 ATATTATTGGGGCGGGGTGC 60.252 55.000 0.00 0.00 45.38 5.01
789 791 2.167662 GAATATTATTGGGGCGGGGTG 58.832 52.381 0.00 0.00 0.00 4.61
790 792 2.070573 AGAATATTATTGGGGCGGGGT 58.929 47.619 0.00 0.00 0.00 4.95
791 793 2.899303 AGAATATTATTGGGGCGGGG 57.101 50.000 0.00 0.00 0.00 5.73
792 794 4.034285 AGAAGAATATTATTGGGGCGGG 57.966 45.455 0.00 0.00 0.00 6.13
855 858 4.386951 CGTGTGATGGTGCGGGGA 62.387 66.667 0.00 0.00 0.00 4.81
891 894 1.453015 AGCAGAGGATCGTCGCTCT 60.453 57.895 20.99 10.10 42.67 4.09
1179 1184 0.177836 GCAGAGGAGGGAGAAGAAGC 59.822 60.000 0.00 0.00 0.00 3.86
1246 1260 2.626780 GGTTCAAAGCGGGCAGTCC 61.627 63.158 0.00 0.00 0.00 3.85
1253 1267 0.449388 GCAGAGATGGTTCAAAGCGG 59.551 55.000 0.00 0.00 0.00 5.52
1271 1285 1.022451 TCCAATCCAAACGTAGCGGC 61.022 55.000 0.00 0.00 0.00 6.53
1273 1287 2.418628 ACAATCCAATCCAAACGTAGCG 59.581 45.455 0.00 0.00 0.00 4.26
1348 1362 3.438216 TTTGACATGATGAAGCAGGGA 57.562 42.857 0.00 0.00 0.00 4.20
1360 1374 4.873817 TGCCAGAACAGAAATTTGACATG 58.126 39.130 0.00 0.00 0.00 3.21
1365 1379 6.907206 TTTCTTTGCCAGAACAGAAATTTG 57.093 33.333 0.00 0.00 41.56 2.32
1375 1389 3.731089 CTGCCAAATTTCTTTGCCAGAA 58.269 40.909 3.66 0.00 45.91 3.02
1377 1391 1.802365 GCTGCCAAATTTCTTTGCCAG 59.198 47.619 5.06 5.06 45.83 4.85
1415 1429 5.813672 CCTTTATTTCTCAAACATGGCCATG 59.186 40.000 38.53 38.53 44.15 3.66
1430 1444 6.108015 TCATGCAAATTGGAGCCTTTATTTC 58.892 36.000 0.00 0.00 0.00 2.17
1467 1481 3.998341 TCATCTGCACGGTTAAAAGGTAC 59.002 43.478 0.00 0.00 0.00 3.34
1639 1657 2.071540 GCTCCTTTGAAAAGCATTGGC 58.928 47.619 0.00 0.00 41.61 4.52
1640 1658 3.672767 AGCTCCTTTGAAAAGCATTGG 57.327 42.857 4.62 0.00 38.51 3.16
1641 1659 8.814235 CATAATAAGCTCCTTTGAAAAGCATTG 58.186 33.333 4.62 0.00 38.51 2.82
1642 1660 7.493645 GCATAATAAGCTCCTTTGAAAAGCATT 59.506 33.333 4.62 0.13 38.51 3.56
1643 1661 6.982724 GCATAATAAGCTCCTTTGAAAAGCAT 59.017 34.615 4.62 0.00 38.51 3.79
1644 1662 6.071447 TGCATAATAAGCTCCTTTGAAAAGCA 60.071 34.615 4.62 0.00 38.51 3.91
1645 1663 6.332630 TGCATAATAAGCTCCTTTGAAAAGC 58.667 36.000 0.00 0.00 34.69 3.51
1646 1664 8.814235 CATTGCATAATAAGCTCCTTTGAAAAG 58.186 33.333 0.00 0.00 35.79 2.27
1647 1665 8.530311 TCATTGCATAATAAGCTCCTTTGAAAA 58.470 29.630 0.00 0.00 0.00 2.29
1648 1666 8.065473 TCATTGCATAATAAGCTCCTTTGAAA 57.935 30.769 0.00 0.00 0.00 2.69
1649 1667 7.643569 TCATTGCATAATAAGCTCCTTTGAA 57.356 32.000 0.00 0.00 0.00 2.69
1650 1668 7.122501 TGTTCATTGCATAATAAGCTCCTTTGA 59.877 33.333 0.00 0.00 0.00 2.69
1651 1669 7.259882 TGTTCATTGCATAATAAGCTCCTTTG 58.740 34.615 0.00 0.00 0.00 2.77
1652 1670 7.408756 TGTTCATTGCATAATAAGCTCCTTT 57.591 32.000 0.00 0.00 0.00 3.11
1653 1671 7.592885 ATGTTCATTGCATAATAAGCTCCTT 57.407 32.000 0.00 0.00 0.00 3.36
1654 1672 8.696043 TTATGTTCATTGCATAATAAGCTCCT 57.304 30.769 0.00 0.00 34.88 3.69
1655 1673 9.565213 GATTATGTTCATTGCATAATAAGCTCC 57.435 33.333 9.60 0.00 44.67 4.70
1656 1674 9.270576 CGATTATGTTCATTGCATAATAAGCTC 57.729 33.333 9.60 0.31 44.67 4.09
1657 1675 9.002600 TCGATTATGTTCATTGCATAATAAGCT 57.997 29.630 9.60 0.00 44.67 3.74
1658 1676 9.778993 ATCGATTATGTTCATTGCATAATAAGC 57.221 29.630 9.60 0.00 44.67 3.09
1665 1683 9.836076 CAATAAGATCGATTATGTTCATTGCAT 57.164 29.630 0.00 0.00 0.00 3.96
1666 1684 7.804600 GCAATAAGATCGATTATGTTCATTGCA 59.195 33.333 21.02 0.00 28.68 4.08
1667 1685 7.804600 TGCAATAAGATCGATTATGTTCATTGC 59.195 33.333 20.09 20.09 0.00 3.56
1668 1686 9.667989 TTGCAATAAGATCGATTATGTTCATTG 57.332 29.630 0.00 4.74 0.00 2.82
1678 1696 9.241317 GACATTGATTTTGCAATAAGATCGATT 57.759 29.630 0.00 0.00 36.39 3.34
1679 1697 8.627403 AGACATTGATTTTGCAATAAGATCGAT 58.373 29.630 0.00 0.00 36.39 3.59
1680 1698 7.988737 AGACATTGATTTTGCAATAAGATCGA 58.011 30.769 0.00 2.79 36.39 3.59
1681 1699 8.624701 AAGACATTGATTTTGCAATAAGATCG 57.375 30.769 0.00 0.00 36.39 3.69
1689 1707 9.844790 CTATGAAGTAAGACATTGATTTTGCAA 57.155 29.630 0.00 0.00 0.00 4.08
1690 1708 9.230122 TCTATGAAGTAAGACATTGATTTTGCA 57.770 29.630 0.00 0.00 0.00 4.08
1696 1714 9.689976 CTCGAATCTATGAAGTAAGACATTGAT 57.310 33.333 0.00 0.00 39.30 2.57
1697 1715 8.903820 TCTCGAATCTATGAAGTAAGACATTGA 58.096 33.333 0.00 0.00 34.27 2.57
1698 1716 9.179552 CTCTCGAATCTATGAAGTAAGACATTG 57.820 37.037 0.00 0.00 0.00 2.82
1699 1717 9.126151 TCTCTCGAATCTATGAAGTAAGACATT 57.874 33.333 0.00 0.00 0.00 2.71
1700 1718 8.684386 TCTCTCGAATCTATGAAGTAAGACAT 57.316 34.615 0.00 0.00 0.00 3.06
1701 1719 8.507524 TTCTCTCGAATCTATGAAGTAAGACA 57.492 34.615 0.00 0.00 0.00 3.41
1705 1723 9.794719 TCCTATTCTCTCGAATCTATGAAGTAA 57.205 33.333 0.00 0.00 40.28 2.24
1706 1724 9.443323 CTCCTATTCTCTCGAATCTATGAAGTA 57.557 37.037 0.00 0.00 40.28 2.24
1707 1725 8.160765 TCTCCTATTCTCTCGAATCTATGAAGT 58.839 37.037 0.00 0.00 40.28 3.01
1708 1726 8.560355 TCTCCTATTCTCTCGAATCTATGAAG 57.440 38.462 0.00 0.00 40.28 3.02
1709 1727 8.788806 GTTCTCCTATTCTCTCGAATCTATGAA 58.211 37.037 0.00 0.00 40.28 2.57
1710 1728 7.939588 TGTTCTCCTATTCTCTCGAATCTATGA 59.060 37.037 0.00 0.00 40.28 2.15
1711 1729 8.105097 TGTTCTCCTATTCTCTCGAATCTATG 57.895 38.462 0.00 0.00 40.28 2.23
1712 1730 7.942341 ACTGTTCTCCTATTCTCTCGAATCTAT 59.058 37.037 0.00 0.00 40.28 1.98
1713 1731 7.284074 ACTGTTCTCCTATTCTCTCGAATCTA 58.716 38.462 0.00 0.00 40.28 1.98
1714 1732 6.126409 ACTGTTCTCCTATTCTCTCGAATCT 58.874 40.000 0.00 0.00 40.28 2.40
1715 1733 6.385649 ACTGTTCTCCTATTCTCTCGAATC 57.614 41.667 0.00 0.00 40.28 2.52
1716 1734 6.016610 GCTACTGTTCTCCTATTCTCTCGAAT 60.017 42.308 0.00 0.00 42.34 3.34
1717 1735 5.297278 GCTACTGTTCTCCTATTCTCTCGAA 59.703 44.000 0.00 0.00 0.00 3.71
1718 1736 4.817464 GCTACTGTTCTCCTATTCTCTCGA 59.183 45.833 0.00 0.00 0.00 4.04
1719 1737 4.023536 GGCTACTGTTCTCCTATTCTCTCG 60.024 50.000 0.00 0.00 0.00 4.04
1720 1738 5.009610 CAGGCTACTGTTCTCCTATTCTCTC 59.990 48.000 0.00 0.00 39.92 3.20
1721 1739 4.892934 CAGGCTACTGTTCTCCTATTCTCT 59.107 45.833 0.00 0.00 39.92 3.10
1722 1740 4.890581 TCAGGCTACTGTTCTCCTATTCTC 59.109 45.833 0.00 0.00 45.14 2.87
1723 1741 4.647399 GTCAGGCTACTGTTCTCCTATTCT 59.353 45.833 0.00 0.00 45.14 2.40
1724 1742 4.402793 TGTCAGGCTACTGTTCTCCTATTC 59.597 45.833 0.00 0.00 45.14 1.75
1725 1743 4.353777 TGTCAGGCTACTGTTCTCCTATT 58.646 43.478 0.00 0.00 45.14 1.73
1726 1744 3.982516 TGTCAGGCTACTGTTCTCCTAT 58.017 45.455 0.00 0.00 45.14 2.57
1727 1745 3.451402 TGTCAGGCTACTGTTCTCCTA 57.549 47.619 0.00 0.00 45.14 2.94
1728 1746 2.310779 TGTCAGGCTACTGTTCTCCT 57.689 50.000 0.00 0.00 45.14 3.69
1729 1747 3.067833 GTTTGTCAGGCTACTGTTCTCC 58.932 50.000 0.00 0.00 45.14 3.71
1730 1748 3.728845 TGTTTGTCAGGCTACTGTTCTC 58.271 45.455 0.00 0.00 45.14 2.87
1731 1749 3.733337 CTGTTTGTCAGGCTACTGTTCT 58.267 45.455 0.00 0.00 45.14 3.01
1742 1760 2.540101 GACTGAACCGACTGTTTGTCAG 59.460 50.000 9.95 9.01 45.60 3.51
1743 1761 2.546778 GACTGAACCGACTGTTTGTCA 58.453 47.619 9.95 0.00 45.60 3.58
1744 1762 1.865340 GGACTGAACCGACTGTTTGTC 59.135 52.381 7.69 7.69 42.06 3.18
1745 1763 1.949465 GGACTGAACCGACTGTTTGT 58.051 50.000 0.00 0.00 37.29 2.83
1755 1773 1.726853 CACCTGAATCGGACTGAACC 58.273 55.000 0.00 0.00 0.00 3.62
1756 1774 1.079503 GCACCTGAATCGGACTGAAC 58.920 55.000 0.00 0.00 0.00 3.18
1757 1775 0.036388 GGCACCTGAATCGGACTGAA 60.036 55.000 0.00 0.00 0.00 3.02
1758 1776 0.904865 AGGCACCTGAATCGGACTGA 60.905 55.000 0.00 0.00 0.00 3.41
1759 1777 0.824109 TAGGCACCTGAATCGGACTG 59.176 55.000 0.00 0.00 0.00 3.51
1760 1778 1.568504 TTAGGCACCTGAATCGGACT 58.431 50.000 0.00 0.00 0.00 3.85
1761 1779 2.158957 TGATTAGGCACCTGAATCGGAC 60.159 50.000 0.00 0.00 33.18 4.79
1762 1780 2.115427 TGATTAGGCACCTGAATCGGA 58.885 47.619 0.00 0.00 33.18 4.55
1763 1781 2.620251 TGATTAGGCACCTGAATCGG 57.380 50.000 0.00 0.00 33.18 4.18
1764 1782 5.991606 TCTATTTGATTAGGCACCTGAATCG 59.008 40.000 0.00 0.00 33.18 3.34
1765 1783 7.255277 GGTTCTATTTGATTAGGCACCTGAATC 60.255 40.741 0.00 5.85 0.00 2.52
1766 1784 6.547510 GGTTCTATTTGATTAGGCACCTGAAT 59.452 38.462 0.00 0.00 0.00 2.57
1767 1785 5.885912 GGTTCTATTTGATTAGGCACCTGAA 59.114 40.000 0.00 0.00 0.00 3.02
1768 1786 5.437060 GGTTCTATTTGATTAGGCACCTGA 58.563 41.667 0.00 0.00 0.00 3.86
1769 1787 4.580580 GGGTTCTATTTGATTAGGCACCTG 59.419 45.833 0.00 0.00 0.00 4.00
1770 1788 4.478686 AGGGTTCTATTTGATTAGGCACCT 59.521 41.667 0.00 0.00 0.00 4.00
1771 1789 4.793201 AGGGTTCTATTTGATTAGGCACC 58.207 43.478 0.00 0.00 0.00 5.01
1772 1790 7.040409 CCATAAGGGTTCTATTTGATTAGGCAC 60.040 40.741 0.00 0.00 0.00 5.01
1773 1791 7.004086 CCATAAGGGTTCTATTTGATTAGGCA 58.996 38.462 0.00 0.00 0.00 4.75
1774 1792 7.231467 TCCATAAGGGTTCTATTTGATTAGGC 58.769 38.462 0.00 0.00 38.11 3.93
1775 1793 9.813826 AATCCATAAGGGTTCTATTTGATTAGG 57.186 33.333 0.00 0.00 30.33 2.69
1778 1796 8.424133 GCAAATCCATAAGGGTTCTATTTGATT 58.576 33.333 10.59 0.00 37.20 2.57
1779 1797 7.786464 AGCAAATCCATAAGGGTTCTATTTGAT 59.214 33.333 10.59 3.65 37.20 2.57
1780 1798 7.125391 AGCAAATCCATAAGGGTTCTATTTGA 58.875 34.615 10.59 0.00 37.20 2.69
1781 1799 7.352079 AGCAAATCCATAAGGGTTCTATTTG 57.648 36.000 0.00 0.00 37.20 2.32
1782 1800 8.282256 ACTAGCAAATCCATAAGGGTTCTATTT 58.718 33.333 0.00 0.00 37.20 1.40
1783 1801 7.816411 ACTAGCAAATCCATAAGGGTTCTATT 58.184 34.615 0.00 0.00 37.20 1.73
1784 1802 7.394144 ACTAGCAAATCCATAAGGGTTCTAT 57.606 36.000 0.00 0.00 37.20 1.98
1785 1803 6.824958 ACTAGCAAATCCATAAGGGTTCTA 57.175 37.500 0.00 0.00 37.20 2.10
1786 1804 5.717119 ACTAGCAAATCCATAAGGGTTCT 57.283 39.130 0.00 0.00 37.20 3.01
1787 1805 5.885912 TCAACTAGCAAATCCATAAGGGTTC 59.114 40.000 0.00 0.00 37.20 3.62
1788 1806 5.826643 TCAACTAGCAAATCCATAAGGGTT 58.173 37.500 0.00 0.00 41.02 4.11
1789 1807 5.450818 TCAACTAGCAAATCCATAAGGGT 57.549 39.130 0.00 0.00 38.11 4.34
1790 1808 7.175641 CCTTATCAACTAGCAAATCCATAAGGG 59.824 40.741 11.13 0.00 38.37 3.95
1791 1809 7.721399 ACCTTATCAACTAGCAAATCCATAAGG 59.279 37.037 14.97 14.97 43.78 2.69
1792 1810 8.682936 ACCTTATCAACTAGCAAATCCATAAG 57.317 34.615 0.00 0.00 0.00 1.73
1795 1813 9.646522 ATTTACCTTATCAACTAGCAAATCCAT 57.353 29.630 0.00 0.00 0.00 3.41
1801 1819 9.778741 CTGGATATTTACCTTATCAACTAGCAA 57.221 33.333 0.00 0.00 0.00 3.91
1802 1820 7.878127 GCTGGATATTTACCTTATCAACTAGCA 59.122 37.037 0.00 0.00 0.00 3.49
1803 1821 7.334671 GGCTGGATATTTACCTTATCAACTAGC 59.665 40.741 0.00 0.00 0.00 3.42
1804 1822 7.824779 GGGCTGGATATTTACCTTATCAACTAG 59.175 40.741 0.00 0.00 0.00 2.57
1805 1823 7.293771 TGGGCTGGATATTTACCTTATCAACTA 59.706 37.037 0.00 0.00 0.00 2.24
1806 1824 6.102615 TGGGCTGGATATTTACCTTATCAACT 59.897 38.462 0.00 0.00 0.00 3.16
1807 1825 6.206829 GTGGGCTGGATATTTACCTTATCAAC 59.793 42.308 0.00 0.00 0.00 3.18
1808 1826 6.102615 AGTGGGCTGGATATTTACCTTATCAA 59.897 38.462 0.00 0.00 0.00 2.57
1809 1827 5.610982 AGTGGGCTGGATATTTACCTTATCA 59.389 40.000 0.00 0.00 0.00 2.15
1810 1828 6.128138 AGTGGGCTGGATATTTACCTTATC 57.872 41.667 0.00 0.00 0.00 1.75
1811 1829 7.642094 TTAGTGGGCTGGATATTTACCTTAT 57.358 36.000 0.00 0.00 0.00 1.73
1812 1830 7.454553 TTTAGTGGGCTGGATATTTACCTTA 57.545 36.000 0.00 0.00 0.00 2.69
1813 1831 5.987019 TTAGTGGGCTGGATATTTACCTT 57.013 39.130 0.00 0.00 0.00 3.50
1814 1832 5.987019 TTTAGTGGGCTGGATATTTACCT 57.013 39.130 0.00 0.00 0.00 3.08
1815 1833 5.048013 GCATTTAGTGGGCTGGATATTTACC 60.048 44.000 0.00 0.00 0.00 2.85
1816 1834 5.770162 AGCATTTAGTGGGCTGGATATTTAC 59.230 40.000 0.00 0.00 36.34 2.01
1817 1835 5.952387 AGCATTTAGTGGGCTGGATATTTA 58.048 37.500 0.00 0.00 36.34 1.40
1818 1836 4.808042 AGCATTTAGTGGGCTGGATATTT 58.192 39.130 0.00 0.00 36.34 1.40
1819 1837 4.459852 AGCATTTAGTGGGCTGGATATT 57.540 40.909 0.00 0.00 36.34 1.28
1820 1838 4.018960 CCTAGCATTTAGTGGGCTGGATAT 60.019 45.833 0.00 0.00 38.26 1.63
1821 1839 3.327757 CCTAGCATTTAGTGGGCTGGATA 59.672 47.826 0.00 0.00 38.26 2.59
1822 1840 2.107204 CCTAGCATTTAGTGGGCTGGAT 59.893 50.000 0.00 0.00 38.26 3.41
1823 1841 1.490490 CCTAGCATTTAGTGGGCTGGA 59.510 52.381 0.00 0.00 38.26 3.86
1824 1842 1.972872 CCTAGCATTTAGTGGGCTGG 58.027 55.000 0.00 0.00 38.55 4.85
1825 1843 1.312815 GCCTAGCATTTAGTGGGCTG 58.687 55.000 0.00 0.00 38.55 4.85
1826 1844 0.179045 CGCCTAGCATTTAGTGGGCT 60.179 55.000 0.00 0.00 41.51 5.19
1827 1845 0.463833 ACGCCTAGCATTTAGTGGGC 60.464 55.000 0.00 0.00 36.60 5.36
1828 1846 2.902705 TACGCCTAGCATTTAGTGGG 57.097 50.000 0.00 0.00 0.00 4.61
1829 1847 4.377021 TCATTACGCCTAGCATTTAGTGG 58.623 43.478 0.00 0.00 0.00 4.00
1830 1848 4.449068 CCTCATTACGCCTAGCATTTAGTG 59.551 45.833 0.00 0.00 0.00 2.74
1831 1849 4.344102 TCCTCATTACGCCTAGCATTTAGT 59.656 41.667 0.00 0.00 0.00 2.24
1832 1850 4.883083 TCCTCATTACGCCTAGCATTTAG 58.117 43.478 0.00 0.00 0.00 1.85
1833 1851 4.948341 TCCTCATTACGCCTAGCATTTA 57.052 40.909 0.00 0.00 0.00 1.40
1834 1852 3.838244 TCCTCATTACGCCTAGCATTT 57.162 42.857 0.00 0.00 0.00 2.32
1835 1853 5.482908 CTTATCCTCATTACGCCTAGCATT 58.517 41.667 0.00 0.00 0.00 3.56
1836 1854 4.081420 CCTTATCCTCATTACGCCTAGCAT 60.081 45.833 0.00 0.00 0.00 3.79
1837 1855 3.258372 CCTTATCCTCATTACGCCTAGCA 59.742 47.826 0.00 0.00 0.00 3.49
1838 1856 3.368531 CCCTTATCCTCATTACGCCTAGC 60.369 52.174 0.00 0.00 0.00 3.42
1839 1857 3.368531 GCCCTTATCCTCATTACGCCTAG 60.369 52.174 0.00 0.00 0.00 3.02
1840 1858 2.565834 GCCCTTATCCTCATTACGCCTA 59.434 50.000 0.00 0.00 0.00 3.93
1841 1859 1.348036 GCCCTTATCCTCATTACGCCT 59.652 52.381 0.00 0.00 0.00 5.52
1842 1860 1.610886 GGCCCTTATCCTCATTACGCC 60.611 57.143 0.00 0.00 0.00 5.68
1843 1861 1.610886 GGGCCCTTATCCTCATTACGC 60.611 57.143 17.04 0.00 0.00 4.42
1844 1862 1.003233 GGGGCCCTTATCCTCATTACG 59.997 57.143 24.38 0.00 0.00 3.18
1845 1863 1.354705 GGGGGCCCTTATCCTCATTAC 59.645 57.143 24.38 0.00 0.00 1.89
1846 1864 1.060164 TGGGGGCCCTTATCCTCATTA 60.060 52.381 24.38 0.00 36.94 1.90
1847 1865 0.329434 TGGGGGCCCTTATCCTCATT 60.329 55.000 24.38 0.00 36.94 2.57
1848 1866 0.329434 TTGGGGGCCCTTATCCTCAT 60.329 55.000 24.38 0.00 32.90 2.90
1849 1867 0.553862 TTTGGGGGCCCTTATCCTCA 60.554 55.000 24.38 6.97 36.94 3.86
1850 1868 0.634465 TTTTGGGGGCCCTTATCCTC 59.366 55.000 24.38 3.83 36.94 3.71
1851 1869 1.097722 TTTTTGGGGGCCCTTATCCT 58.902 50.000 24.38 0.00 36.94 3.24
1852 1870 3.721969 TTTTTGGGGGCCCTTATCC 57.278 52.632 24.38 15.37 36.94 2.59
1872 1890 9.813080 CCTTAAAGTTCATAGAACGAAAAGAAG 57.187 33.333 15.86 10.22 0.00 2.85
1873 1891 9.333724 ACCTTAAAGTTCATAGAACGAAAAGAA 57.666 29.630 15.86 0.00 0.00 2.52
1874 1892 8.770828 CACCTTAAAGTTCATAGAACGAAAAGA 58.229 33.333 15.86 0.00 0.00 2.52
1875 1893 8.557029 ACACCTTAAAGTTCATAGAACGAAAAG 58.443 33.333 4.43 8.47 0.00 2.27
1876 1894 8.441312 ACACCTTAAAGTTCATAGAACGAAAA 57.559 30.769 4.43 0.62 0.00 2.29
1877 1895 9.545105 TTACACCTTAAAGTTCATAGAACGAAA 57.455 29.630 4.43 0.91 0.00 3.46
1878 1896 8.981647 GTTACACCTTAAAGTTCATAGAACGAA 58.018 33.333 4.43 1.00 0.00 3.85
1879 1897 8.362639 AGTTACACCTTAAAGTTCATAGAACGA 58.637 33.333 4.43 0.00 0.00 3.85
1880 1898 8.530269 AGTTACACCTTAAAGTTCATAGAACG 57.470 34.615 4.43 0.00 0.00 3.95
1883 1901 9.485206 GTCAAGTTACACCTTAAAGTTCATAGA 57.515 33.333 0.00 0.00 0.00 1.98
1884 1902 8.718734 GGTCAAGTTACACCTTAAAGTTCATAG 58.281 37.037 0.00 0.00 0.00 2.23
1885 1903 8.434392 AGGTCAAGTTACACCTTAAAGTTCATA 58.566 33.333 0.54 0.00 40.35 2.15
1886 1904 7.287810 AGGTCAAGTTACACCTTAAAGTTCAT 58.712 34.615 0.54 0.00 40.35 2.57
1887 1905 6.655930 AGGTCAAGTTACACCTTAAAGTTCA 58.344 36.000 0.54 0.00 40.35 3.18
1896 1914 4.351111 AGGATTCAAGGTCAAGTTACACCT 59.649 41.667 0.54 0.54 45.59 4.00
1897 1915 4.652822 AGGATTCAAGGTCAAGTTACACC 58.347 43.478 0.00 0.00 0.00 4.16
1898 1916 6.369065 CACTAGGATTCAAGGTCAAGTTACAC 59.631 42.308 0.00 0.00 0.00 2.90
1899 1917 6.464222 CACTAGGATTCAAGGTCAAGTTACA 58.536 40.000 0.00 0.00 0.00 2.41
1900 1918 5.875359 CCACTAGGATTCAAGGTCAAGTTAC 59.125 44.000 0.00 0.00 36.89 2.50
1917 1935 8.585018 ACAAGGAAAATTTGTAAATCCACTAGG 58.415 33.333 8.25 0.00 37.02 3.02
1948 1968 6.849085 ATTATTGTTACATCAAGCCAACCA 57.151 33.333 0.00 0.00 0.00 3.67
1976 1996 5.989777 GGACATGCGTTCCATTAGTACTATT 59.010 40.000 2.79 0.00 29.71 1.73
1977 1997 5.304614 AGGACATGCGTTCCATTAGTACTAT 59.695 40.000 2.79 0.00 29.71 2.12
2305 2326 1.272704 GGTCTCAAGGGGCAAAAGGAT 60.273 52.381 0.00 0.00 0.00 3.24
2444 2477 2.417978 TTGCTCAACTGCAACCTGG 58.582 52.632 0.00 0.00 46.43 4.45
2515 2548 1.632920 AGAGAAAAGAAGGGGCTCTGG 59.367 52.381 0.00 0.00 34.85 3.86
2550 2583 5.380043 CTGCTCCCCAGAATTGTATTGTAT 58.620 41.667 0.00 0.00 44.64 2.29
2768 2801 4.636206 GGGCATTAGTAAAAGACTGGACTG 59.364 45.833 0.00 0.00 39.39 3.51
2816 2856 7.839907 TGAAATAGGAAAAATGGAGAATGTGG 58.160 34.615 0.00 0.00 0.00 4.17
2930 2970 1.131303 AACCCATGGACAGGAACCGA 61.131 55.000 15.22 0.00 0.00 4.69
2957 2997 0.240945 AGCCTCATTTTTGTTCGCGG 59.759 50.000 6.13 0.00 0.00 6.46
3052 3092 3.554324 CACCACGTACAAGATTTATCCCG 59.446 47.826 0.00 0.00 0.00 5.14
3187 3227 6.754702 AACATGATCAGAGAACTTCCATTG 57.245 37.500 0.00 0.00 0.00 2.82
3327 3372 3.132289 GCAAGGGCACTGTATCTACTACA 59.868 47.826 0.00 0.00 40.72 2.74
3328 3373 3.385111 AGCAAGGGCACTGTATCTACTAC 59.615 47.826 0.00 0.00 44.61 2.73
3329 3374 3.643237 AGCAAGGGCACTGTATCTACTA 58.357 45.455 0.00 0.00 44.61 1.82
3330 3375 2.472029 AGCAAGGGCACTGTATCTACT 58.528 47.619 0.00 0.00 44.61 2.57
3366 3411 7.317390 TCAAAAGTGCTCAATAGTACGACATA 58.683 34.615 0.00 0.00 42.60 2.29
3558 3606 4.279420 CCGGTTAGGTTAGGTATAGGTGTC 59.721 50.000 0.00 0.00 34.51 3.67
3677 3725 7.175104 TGGCTATGAAGTGGAAATAGACTTTT 58.825 34.615 0.00 0.00 33.74 2.27
3771 3823 0.253610 AATGACACCGCCCGGAAATA 59.746 50.000 14.44 0.00 38.96 1.40
3826 3878 4.391358 GTCACGTCAAATGGAAATACACG 58.609 43.478 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.