Multiple sequence alignment - TraesCS7D01G303300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G303300 chr7D 100.000 2270 0 0 1 2270 383916202 383918471 0.000000e+00 4193.0
1 TraesCS7D01G303300 chr7D 92.871 519 32 5 1751 2268 449795359 449795873 0.000000e+00 749.0
2 TraesCS7D01G303300 chr7D 98.578 422 6 0 940 1361 412650249 412649828 0.000000e+00 747.0
3 TraesCS7D01G303300 chr7D 98.122 426 8 0 940 1365 21280238 21279813 0.000000e+00 743.0
4 TraesCS7D01G303300 chr7D 92.205 526 34 5 1751 2270 469576020 469575496 0.000000e+00 737.0
5 TraesCS7D01G303300 chr7D 88.084 621 54 17 103 713 316634509 316633899 0.000000e+00 719.0
6 TraesCS7D01G303300 chr7D 90.909 495 23 7 1 473 383936152 383936646 0.000000e+00 645.0
7 TraesCS7D01G303300 chr2B 90.155 904 50 16 1405 2270 633956696 633955794 0.000000e+00 1140.0
8 TraesCS7D01G303300 chr2B 87.618 848 70 29 102 940 633957603 633956782 0.000000e+00 952.0
9 TraesCS7D01G303300 chr2B 98.095 420 8 0 940 1359 507821584 507821165 0.000000e+00 732.0
10 TraesCS7D01G303300 chr2B 88.975 517 29 10 245 736 5058671 5058158 4.140000e-172 614.0
11 TraesCS7D01G303300 chr5B 87.268 754 63 18 1 728 517899096 517898350 0.000000e+00 830.0
12 TraesCS7D01G303300 chr5B 88.146 658 39 25 103 731 75315847 75315200 0.000000e+00 747.0
13 TraesCS7D01G303300 chr5B 88.687 495 32 9 1 473 517894716 517894224 1.170000e-162 582.0
14 TraesCS7D01G303300 chr5B 89.620 395 38 3 81 473 565637455 565637848 1.210000e-137 499.0
15 TraesCS7D01G303300 chr7B 87.268 754 57 21 1 728 591699507 591698767 0.000000e+00 824.0
16 TraesCS7D01G303300 chr7B 88.978 499 28 11 1 474 591694667 591694171 1.940000e-165 592.0
17 TraesCS7D01G303300 chr3D 92.129 559 38 5 1713 2270 337140889 337141442 0.000000e+00 784.0
18 TraesCS7D01G303300 chr3D 98.565 418 6 0 940 1357 14137346 14136929 0.000000e+00 739.0
19 TraesCS7D01G303300 chr3D 88.531 497 34 9 1 475 237629399 237628904 4.200000e-162 580.0
20 TraesCS7D01G303300 chr6B 93.321 524 28 6 1751 2270 325256299 325256819 0.000000e+00 767.0
21 TraesCS7D01G303300 chr6B 87.857 140 15 2 1417 1555 329420344 329420206 1.800000e-36 163.0
22 TraesCS7D01G303300 chr6B 75.535 327 45 15 1557 1852 602557458 602557780 6.580000e-26 128.0
23 TraesCS7D01G303300 chr1B 88.030 660 45 13 99 730 268494885 268495538 0.000000e+00 750.0
24 TraesCS7D01G303300 chr1B 87.299 685 49 14 119 773 184216953 184216277 0.000000e+00 749.0
25 TraesCS7D01G303300 chr1B 74.803 254 36 20 1398 1644 268495734 268495966 3.110000e-14 89.8
26 TraesCS7D01G303300 chr4B 92.692 520 36 2 1751 2270 346279186 346279703 0.000000e+00 749.0
27 TraesCS7D01G303300 chr3B 92.692 520 34 4 1751 2270 47581989 47582504 0.000000e+00 747.0
28 TraesCS7D01G303300 chr3B 98.109 423 8 0 940 1362 478101246 478101668 0.000000e+00 737.0
29 TraesCS7D01G303300 chr1D 98.578 422 6 0 940 1361 45482168 45482589 0.000000e+00 747.0
30 TraesCS7D01G303300 chr1D 92.161 523 32 8 1751 2270 337080801 337080285 0.000000e+00 730.0
31 TraesCS7D01G303300 chr1D 88.056 360 33 9 101 458 176375654 176376005 3.490000e-113 418.0
32 TraesCS7D01G303300 chr1A 92.706 521 28 9 1751 2267 85057517 85058031 0.000000e+00 743.0
33 TraesCS7D01G303300 chr3A 98.337 421 7 0 940 1360 483248773 483248353 0.000000e+00 739.0
34 TraesCS7D01G303300 chr2D 85.850 735 58 18 74 774 104852177 104852899 0.000000e+00 739.0
35 TraesCS7D01G303300 chr5D 98.091 419 8 0 940 1358 425986432 425986014 0.000000e+00 730.0
36 TraesCS7D01G303300 chr5D 86.163 701 57 16 103 773 48885102 48885792 0.000000e+00 721.0
37 TraesCS7D01G303300 chr7A 97.412 425 10 1 940 1363 643673230 643673654 0.000000e+00 723.0
38 TraesCS7D01G303300 chr6A 85.896 709 59 14 103 775 10988499 10989202 0.000000e+00 717.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G303300 chr7D 383916202 383918471 2269 False 4193.0 4193 100.0000 1 2270 1 chr7D.!!$F1 2269
1 TraesCS7D01G303300 chr7D 449795359 449795873 514 False 749.0 749 92.8710 1751 2268 1 chr7D.!!$F3 517
2 TraesCS7D01G303300 chr7D 469575496 469576020 524 True 737.0 737 92.2050 1751 2270 1 chr7D.!!$R4 519
3 TraesCS7D01G303300 chr7D 316633899 316634509 610 True 719.0 719 88.0840 103 713 1 chr7D.!!$R2 610
4 TraesCS7D01G303300 chr2B 633955794 633957603 1809 True 1046.0 1140 88.8865 102 2270 2 chr2B.!!$R3 2168
5 TraesCS7D01G303300 chr2B 5058158 5058671 513 True 614.0 614 88.9750 245 736 1 chr2B.!!$R1 491
6 TraesCS7D01G303300 chr5B 75315200 75315847 647 True 747.0 747 88.1460 103 731 1 chr5B.!!$R1 628
7 TraesCS7D01G303300 chr5B 517894224 517899096 4872 True 706.0 830 87.9775 1 728 2 chr5B.!!$R2 727
8 TraesCS7D01G303300 chr7B 591698767 591699507 740 True 824.0 824 87.2680 1 728 1 chr7B.!!$R2 727
9 TraesCS7D01G303300 chr3D 337140889 337141442 553 False 784.0 784 92.1290 1713 2270 1 chr3D.!!$F1 557
10 TraesCS7D01G303300 chr6B 325256299 325256819 520 False 767.0 767 93.3210 1751 2270 1 chr6B.!!$F1 519
11 TraesCS7D01G303300 chr1B 184216277 184216953 676 True 749.0 749 87.2990 119 773 1 chr1B.!!$R1 654
12 TraesCS7D01G303300 chr1B 268494885 268495966 1081 False 419.9 750 81.4165 99 1644 2 chr1B.!!$F1 1545
13 TraesCS7D01G303300 chr4B 346279186 346279703 517 False 749.0 749 92.6920 1751 2270 1 chr4B.!!$F1 519
14 TraesCS7D01G303300 chr3B 47581989 47582504 515 False 747.0 747 92.6920 1751 2270 1 chr3B.!!$F1 519
15 TraesCS7D01G303300 chr1D 337080285 337080801 516 True 730.0 730 92.1610 1751 2270 1 chr1D.!!$R1 519
16 TraesCS7D01G303300 chr1A 85057517 85058031 514 False 743.0 743 92.7060 1751 2267 1 chr1A.!!$F1 516
17 TraesCS7D01G303300 chr2D 104852177 104852899 722 False 739.0 739 85.8500 74 774 1 chr2D.!!$F1 700
18 TraesCS7D01G303300 chr5D 48885102 48885792 690 False 721.0 721 86.1630 103 773 1 chr5D.!!$F1 670
19 TraesCS7D01G303300 chr6A 10988499 10989202 703 False 717.0 717 85.8960 103 775 1 chr6A.!!$F1 672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 207 0.033504 AGTGCGACCGTCAAGACATT 59.966 50.0 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1286 1426 0.030638 TTTCAGACAAAGCCGCAAGC 59.969 50.0 0.0 0.0 44.25 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 0.812014 ACATTGGACACGACAACGCA 60.812 50.000 0.00 0.00 43.96 5.24
63 64 2.848858 AACGCACAGTACCGACCGT 61.849 57.895 0.22 0.00 0.00 4.83
68 69 1.000233 CACAGTACCGACCGTCAACG 61.000 60.000 0.00 0.00 39.44 4.10
98 99 6.013689 GCCGTATTCAATAAATAGTTAGCGC 58.986 40.000 0.00 0.00 30.39 5.92
114 115 3.629142 AGCGCTTGTTAGGGTTTAGAT 57.371 42.857 2.64 0.00 36.73 1.98
115 116 3.532542 AGCGCTTGTTAGGGTTTAGATC 58.467 45.455 2.64 0.00 36.73 2.75
171 181 6.774354 ACTTTTATTTGTCTTCGCTCGTAA 57.226 33.333 0.00 0.00 0.00 3.18
172 182 7.181143 ACTTTTATTTGTCTTCGCTCGTAAA 57.819 32.000 0.00 0.00 0.00 2.01
196 207 0.033504 AGTGCGACCGTCAAGACATT 59.966 50.000 0.00 0.00 0.00 2.71
321 377 1.541310 AATCCTTCGTGGCTCGGTCA 61.541 55.000 9.26 0.00 40.32 4.02
438 500 5.045432 TCCCACCCAAAATCGTAGTTATCTT 60.045 40.000 0.00 0.00 0.00 2.40
452 514 8.528643 TCGTAGTTATCTTCCTCTCATCAAAAA 58.471 33.333 0.00 0.00 0.00 1.94
511 576 4.098654 CAGGTCATCGGTGAGAGATTTACT 59.901 45.833 0.00 0.00 34.36 2.24
548 616 5.530915 CAGATTGTTTTCAGTCCTACAACCA 59.469 40.000 0.00 0.00 37.27 3.67
549 617 5.531287 AGATTGTTTTCAGTCCTACAACCAC 59.469 40.000 0.00 0.00 37.27 4.16
550 618 3.547746 TGTTTTCAGTCCTACAACCACC 58.452 45.455 0.00 0.00 0.00 4.61
557 625 3.895041 CAGTCCTACAACCACCCAAAAAT 59.105 43.478 0.00 0.00 0.00 1.82
595 671 2.311124 AGTTTATCCGCTGCACCTAC 57.689 50.000 0.00 0.00 0.00 3.18
670 752 8.000709 TCTTGGTTGCATTCATCCTAGAATTAT 58.999 33.333 4.62 0.00 39.36 1.28
737 819 5.050567 ACACTCGTTTTTGTCTACCGAAATC 60.051 40.000 0.00 0.00 0.00 2.17
743 825 1.946984 TGTCTACCGAAATCCCCTGT 58.053 50.000 0.00 0.00 0.00 4.00
751 835 1.067142 CGAAATCCCCTGTCGAGTTGA 60.067 52.381 0.00 0.00 36.92 3.18
776 860 9.981114 GATTGTTTATCCAGAAAAGAAAAAGGA 57.019 29.630 0.00 0.00 0.00 3.36
797 881 3.713826 AAGGGGATCTTTGTCGCTTAA 57.286 42.857 0.00 0.00 33.02 1.85
827 913 0.465824 GATTGCTCCATCTGCCTGCT 60.466 55.000 0.00 0.00 0.00 4.24
850 936 1.908065 CATCACGCACGTCATCAGTA 58.092 50.000 0.00 0.00 0.00 2.74
851 937 2.463876 CATCACGCACGTCATCAGTAT 58.536 47.619 0.00 0.00 0.00 2.12
853 939 2.954316 TCACGCACGTCATCAGTATTT 58.046 42.857 0.00 0.00 0.00 1.40
854 940 2.921121 TCACGCACGTCATCAGTATTTC 59.079 45.455 0.00 0.00 0.00 2.17
890 976 2.264480 CATCGTCCGCTGTTCCCA 59.736 61.111 0.00 0.00 0.00 4.37
942 1082 5.299279 CCACATATTTACGCCAGATTTCCTT 59.701 40.000 0.00 0.00 0.00 3.36
943 1083 6.430451 CACATATTTACGCCAGATTTCCTTC 58.570 40.000 0.00 0.00 0.00 3.46
945 1085 6.483640 ACATATTTACGCCAGATTTCCTTCTC 59.516 38.462 0.00 0.00 0.00 2.87
947 1087 4.553330 TTACGCCAGATTTCCTTCTCTT 57.447 40.909 0.00 0.00 0.00 2.85
948 1088 2.979240 ACGCCAGATTTCCTTCTCTTC 58.021 47.619 0.00 0.00 0.00 2.87
949 1089 2.284190 CGCCAGATTTCCTTCTCTTCC 58.716 52.381 0.00 0.00 0.00 3.46
951 1091 3.690460 GCCAGATTTCCTTCTCTTCCAA 58.310 45.455 0.00 0.00 0.00 3.53
952 1092 4.276642 GCCAGATTTCCTTCTCTTCCAAT 58.723 43.478 0.00 0.00 0.00 3.16
953 1093 4.097589 GCCAGATTTCCTTCTCTTCCAATG 59.902 45.833 0.00 0.00 0.00 2.82
954 1094 4.097589 CCAGATTTCCTTCTCTTCCAATGC 59.902 45.833 0.00 0.00 0.00 3.56
956 1096 2.113860 TTCCTTCTCTTCCAATGCCG 57.886 50.000 0.00 0.00 0.00 5.69
957 1097 0.392998 TCCTTCTCTTCCAATGCCGC 60.393 55.000 0.00 0.00 0.00 6.53
959 1099 1.457346 CTTCTCTTCCAATGCCGCTT 58.543 50.000 0.00 0.00 0.00 4.68
963 1103 1.815003 CTCTTCCAATGCCGCTTCTTT 59.185 47.619 0.00 0.00 0.00 2.52
964 1104 2.229784 CTCTTCCAATGCCGCTTCTTTT 59.770 45.455 0.00 0.00 0.00 2.27
966 1106 2.437200 TCCAATGCCGCTTCTTTTTG 57.563 45.000 0.00 0.00 0.00 2.44
967 1107 0.792031 CCAATGCCGCTTCTTTTTGC 59.208 50.000 0.00 0.00 0.00 3.68
973 1113 3.389741 CGCTTCTTTTTGCGCATCT 57.610 47.368 12.75 0.00 45.50 2.90
974 1114 2.525750 CGCTTCTTTTTGCGCATCTA 57.474 45.000 12.75 0.00 45.50 1.98
975 1115 2.434761 CGCTTCTTTTTGCGCATCTAG 58.565 47.619 12.75 8.94 45.50 2.43
976 1116 2.094258 CGCTTCTTTTTGCGCATCTAGA 59.906 45.455 12.75 11.38 45.50 2.43
977 1117 3.424829 CGCTTCTTTTTGCGCATCTAGAA 60.425 43.478 12.75 18.03 45.50 2.10
978 1118 4.666237 GCTTCTTTTTGCGCATCTAGAAT 58.334 39.130 21.30 0.00 0.00 2.40
979 1119 4.498323 GCTTCTTTTTGCGCATCTAGAATG 59.502 41.667 21.30 17.21 0.00 2.67
980 1120 5.674569 GCTTCTTTTTGCGCATCTAGAATGA 60.675 40.000 21.30 12.53 0.00 2.57
981 1121 5.221891 TCTTTTTGCGCATCTAGAATGAC 57.778 39.130 12.75 0.00 0.00 3.06
982 1122 4.694982 TCTTTTTGCGCATCTAGAATGACA 59.305 37.500 12.75 0.00 0.00 3.58
983 1123 5.355071 TCTTTTTGCGCATCTAGAATGACAT 59.645 36.000 12.75 0.00 0.00 3.06
984 1124 5.565592 TTTTGCGCATCTAGAATGACATT 57.434 34.783 12.75 0.00 0.00 2.71
985 1125 4.801147 TTGCGCATCTAGAATGACATTC 57.199 40.909 18.71 18.71 39.56 2.67
987 1127 4.053983 TGCGCATCTAGAATGACATTCTC 58.946 43.478 29.49 16.24 46.17 2.87
988 1128 3.431572 GCGCATCTAGAATGACATTCTCC 59.568 47.826 29.49 14.94 46.17 3.71
989 1129 3.993081 CGCATCTAGAATGACATTCTCCC 59.007 47.826 29.49 15.21 46.17 4.30
990 1130 3.993081 GCATCTAGAATGACATTCTCCCG 59.007 47.826 29.49 19.81 46.17 5.14
991 1131 4.502259 GCATCTAGAATGACATTCTCCCGT 60.502 45.833 29.49 14.32 46.17 5.28
992 1132 4.655762 TCTAGAATGACATTCTCCCGTG 57.344 45.455 29.49 16.93 46.17 4.94
993 1133 2.698855 AGAATGACATTCTCCCGTGG 57.301 50.000 22.46 0.00 46.17 4.94
994 1134 1.017387 GAATGACATTCTCCCGTGGC 58.983 55.000 19.01 0.00 36.37 5.01
995 1135 0.620556 AATGACATTCTCCCGTGGCT 59.379 50.000 0.00 0.00 0.00 4.75
996 1136 0.179000 ATGACATTCTCCCGTGGCTC 59.821 55.000 0.00 0.00 0.00 4.70
997 1137 1.519455 GACATTCTCCCGTGGCTCG 60.519 63.158 1.28 1.28 39.52 5.03
1006 1146 3.499737 CGTGGCTCGGAATGCACC 61.500 66.667 0.13 0.00 35.71 5.01
1007 1147 2.359850 GTGGCTCGGAATGCACCA 60.360 61.111 0.00 0.00 0.00 4.17
1008 1148 2.359850 TGGCTCGGAATGCACCAC 60.360 61.111 0.00 0.00 0.00 4.16
1009 1149 2.359850 GGCTCGGAATGCACCACA 60.360 61.111 0.00 0.00 0.00 4.17
1010 1150 1.750399 GGCTCGGAATGCACCACAT 60.750 57.895 0.00 0.00 42.30 3.21
1011 1151 1.718757 GGCTCGGAATGCACCACATC 61.719 60.000 0.00 0.00 38.34 3.06
1012 1152 0.745845 GCTCGGAATGCACCACATCT 60.746 55.000 0.00 0.00 38.34 2.90
1013 1153 1.293924 CTCGGAATGCACCACATCTC 58.706 55.000 0.00 0.00 38.34 2.75
1014 1154 0.904649 TCGGAATGCACCACATCTCT 59.095 50.000 0.00 0.00 38.34 3.10
1015 1155 2.101415 CTCGGAATGCACCACATCTCTA 59.899 50.000 0.00 0.00 38.34 2.43
1016 1156 2.159099 TCGGAATGCACCACATCTCTAC 60.159 50.000 0.00 0.00 38.34 2.59
1017 1157 2.159043 CGGAATGCACCACATCTCTACT 60.159 50.000 0.00 0.00 38.34 2.57
1018 1158 3.679917 CGGAATGCACCACATCTCTACTT 60.680 47.826 0.00 0.00 38.34 2.24
1019 1159 3.873952 GGAATGCACCACATCTCTACTTC 59.126 47.826 0.00 0.00 38.34 3.01
1020 1160 4.383552 GGAATGCACCACATCTCTACTTCT 60.384 45.833 0.00 0.00 38.34 2.85
1021 1161 4.833478 ATGCACCACATCTCTACTTCTT 57.167 40.909 0.00 0.00 31.52 2.52
1022 1162 4.193826 TGCACCACATCTCTACTTCTTC 57.806 45.455 0.00 0.00 0.00 2.87
1023 1163 3.834813 TGCACCACATCTCTACTTCTTCT 59.165 43.478 0.00 0.00 0.00 2.85
1024 1164 4.284490 TGCACCACATCTCTACTTCTTCTT 59.716 41.667 0.00 0.00 0.00 2.52
1025 1165 4.629200 GCACCACATCTCTACTTCTTCTTG 59.371 45.833 0.00 0.00 0.00 3.02
1026 1166 5.174395 CACCACATCTCTACTTCTTCTTGG 58.826 45.833 0.00 0.00 0.00 3.61
1027 1167 4.841246 ACCACATCTCTACTTCTTCTTGGT 59.159 41.667 0.00 0.00 0.00 3.67
1028 1168 5.046950 ACCACATCTCTACTTCTTCTTGGTC 60.047 44.000 0.00 0.00 0.00 4.02
1029 1169 5.098893 CACATCTCTACTTCTTCTTGGTCG 58.901 45.833 0.00 0.00 0.00 4.79
1030 1170 4.158764 ACATCTCTACTTCTTCTTGGTCGG 59.841 45.833 0.00 0.00 0.00 4.79
1031 1171 2.492484 TCTCTACTTCTTCTTGGTCGGC 59.508 50.000 0.00 0.00 0.00 5.54
1032 1172 1.201647 TCTACTTCTTCTTGGTCGGCG 59.798 52.381 0.00 0.00 0.00 6.46
1033 1173 1.201647 CTACTTCTTCTTGGTCGGCGA 59.798 52.381 4.99 4.99 0.00 5.54
1034 1174 0.038159 ACTTCTTCTTGGTCGGCGAG 60.038 55.000 11.20 0.00 0.00 5.03
1035 1175 1.355066 CTTCTTCTTGGTCGGCGAGC 61.355 60.000 30.23 30.23 0.00 5.03
1036 1176 3.181967 CTTCTTGGTCGGCGAGCG 61.182 66.667 30.56 19.18 32.15 5.03
1050 1190 2.741092 AGCGCTTCGGTCAAAGGA 59.259 55.556 2.64 0.00 29.31 3.36
1051 1191 1.296715 AGCGCTTCGGTCAAAGGAT 59.703 52.632 2.64 0.00 29.31 3.24
1052 1192 1.021390 AGCGCTTCGGTCAAAGGATG 61.021 55.000 2.64 0.00 29.31 3.51
1053 1193 1.982073 GCGCTTCGGTCAAAGGATGG 61.982 60.000 0.00 0.00 0.00 3.51
1054 1194 0.673644 CGCTTCGGTCAAAGGATGGT 60.674 55.000 0.00 0.00 0.00 3.55
1055 1195 0.804989 GCTTCGGTCAAAGGATGGTG 59.195 55.000 0.00 0.00 0.00 4.17
1056 1196 1.453155 CTTCGGTCAAAGGATGGTGG 58.547 55.000 0.00 0.00 0.00 4.61
1057 1197 1.003118 CTTCGGTCAAAGGATGGTGGA 59.997 52.381 0.00 0.00 0.00 4.02
1058 1198 1.060729 TCGGTCAAAGGATGGTGGAA 58.939 50.000 0.00 0.00 0.00 3.53
1059 1199 1.165270 CGGTCAAAGGATGGTGGAAC 58.835 55.000 0.00 0.00 0.00 3.62
1060 1200 1.165270 GGTCAAAGGATGGTGGAACG 58.835 55.000 0.00 0.00 38.12 3.95
1061 1201 1.271163 GGTCAAAGGATGGTGGAACGA 60.271 52.381 0.00 0.00 38.12 3.85
1062 1202 2.618045 GGTCAAAGGATGGTGGAACGAT 60.618 50.000 0.00 0.00 38.26 3.73
1063 1203 3.370103 GGTCAAAGGATGGTGGAACGATA 60.370 47.826 0.00 0.00 34.53 2.92
1064 1204 4.258543 GTCAAAGGATGGTGGAACGATAA 58.741 43.478 0.00 0.00 34.53 1.75
1065 1205 4.094442 GTCAAAGGATGGTGGAACGATAAC 59.906 45.833 0.00 0.00 34.53 1.89
1066 1206 3.277142 AAGGATGGTGGAACGATAACC 57.723 47.619 0.00 0.00 34.53 2.85
1067 1207 2.478292 AGGATGGTGGAACGATAACCT 58.522 47.619 0.00 0.00 34.53 3.50
1068 1208 2.844348 AGGATGGTGGAACGATAACCTT 59.156 45.455 0.00 0.00 34.53 3.50
1069 1209 3.118371 AGGATGGTGGAACGATAACCTTC 60.118 47.826 0.00 0.00 34.53 3.46
1070 1210 3.370103 GGATGGTGGAACGATAACCTTCA 60.370 47.826 12.05 0.00 34.53 3.02
1071 1211 3.328382 TGGTGGAACGATAACCTTCAG 57.672 47.619 0.00 0.00 38.12 3.02
1072 1212 2.901192 TGGTGGAACGATAACCTTCAGA 59.099 45.455 0.00 0.00 38.12 3.27
1073 1213 3.517901 TGGTGGAACGATAACCTTCAGAT 59.482 43.478 0.00 0.00 38.12 2.90
1074 1214 4.019681 TGGTGGAACGATAACCTTCAGATT 60.020 41.667 0.00 0.00 38.12 2.40
1075 1215 4.571176 GGTGGAACGATAACCTTCAGATTC 59.429 45.833 0.00 0.00 38.12 2.52
1076 1216 4.267928 GTGGAACGATAACCTTCAGATTCG 59.732 45.833 0.00 0.00 0.00 3.34
1077 1217 4.081862 TGGAACGATAACCTTCAGATTCGT 60.082 41.667 0.00 0.00 41.11 3.85
1078 1218 4.503370 GGAACGATAACCTTCAGATTCGTC 59.497 45.833 0.00 0.00 38.72 4.20
1079 1219 4.985538 ACGATAACCTTCAGATTCGTCT 57.014 40.909 0.00 0.00 35.09 4.18
1080 1220 4.922719 ACGATAACCTTCAGATTCGTCTC 58.077 43.478 0.00 0.00 35.09 3.36
1081 1221 3.969352 CGATAACCTTCAGATTCGTCTCG 59.031 47.826 0.00 0.00 0.00 4.04
1082 1222 2.656560 AACCTTCAGATTCGTCTCGG 57.343 50.000 0.00 0.00 0.00 4.63
1083 1223 0.173708 ACCTTCAGATTCGTCTCGGC 59.826 55.000 0.00 0.00 0.00 5.54
1084 1224 0.457851 CCTTCAGATTCGTCTCGGCT 59.542 55.000 0.00 0.00 0.00 5.52
1085 1225 1.535015 CCTTCAGATTCGTCTCGGCTC 60.535 57.143 0.00 0.00 0.00 4.70
1086 1226 0.098905 TTCAGATTCGTCTCGGCTCG 59.901 55.000 0.00 0.00 0.00 5.03
1087 1227 1.941734 CAGATTCGTCTCGGCTCGC 60.942 63.158 0.00 0.00 0.00 5.03
1088 1228 2.655685 GATTCGTCTCGGCTCGCC 60.656 66.667 0.00 0.00 0.00 5.54
1089 1229 4.208686 ATTCGTCTCGGCTCGCCC 62.209 66.667 1.72 0.00 0.00 6.13
1092 1232 4.735132 CGTCTCGGCTCGCCCAAA 62.735 66.667 1.72 0.00 0.00 3.28
1093 1233 2.815647 GTCTCGGCTCGCCCAAAG 60.816 66.667 1.72 0.00 0.00 2.77
1094 1234 4.760047 TCTCGGCTCGCCCAAAGC 62.760 66.667 1.72 0.00 39.09 3.51
1099 1239 3.752339 GCTCGCCCAAAGCCCTTG 61.752 66.667 0.00 0.00 38.78 3.61
1100 1240 3.752339 CTCGCCCAAAGCCCTTGC 61.752 66.667 0.00 0.00 38.78 4.01
1103 1243 3.385384 GCCCAAAGCCCTTGCCTC 61.385 66.667 0.00 0.00 38.69 4.70
1104 1244 2.118076 CCCAAAGCCCTTGCCTCA 59.882 61.111 0.00 0.00 38.69 3.86
1105 1245 1.305549 CCCAAAGCCCTTGCCTCAT 60.306 57.895 0.00 0.00 38.69 2.90
1106 1246 0.906282 CCCAAAGCCCTTGCCTCATT 60.906 55.000 0.00 0.00 38.69 2.57
1107 1247 0.248289 CCAAAGCCCTTGCCTCATTG 59.752 55.000 0.00 0.00 38.69 2.82
1108 1248 1.259609 CAAAGCCCTTGCCTCATTGA 58.740 50.000 0.00 0.00 38.69 2.57
1109 1249 1.829222 CAAAGCCCTTGCCTCATTGAT 59.171 47.619 0.00 0.00 38.69 2.57
1110 1250 1.481871 AAGCCCTTGCCTCATTGATG 58.518 50.000 0.00 0.00 38.69 3.07
1111 1251 0.627451 AGCCCTTGCCTCATTGATGA 59.373 50.000 0.00 0.00 38.69 2.92
1112 1252 1.217183 AGCCCTTGCCTCATTGATGAT 59.783 47.619 0.00 0.00 38.69 2.45
1113 1253 1.340248 GCCCTTGCCTCATTGATGATG 59.660 52.381 0.00 0.00 36.02 3.07
1114 1254 1.340248 CCCTTGCCTCATTGATGATGC 59.660 52.381 12.49 12.49 45.05 3.91
1115 1255 2.307768 CCTTGCCTCATTGATGATGCT 58.692 47.619 17.89 0.00 45.07 3.79
1116 1256 2.293677 CCTTGCCTCATTGATGATGCTC 59.706 50.000 17.89 0.98 45.07 4.26
1117 1257 2.721425 TGCCTCATTGATGATGCTCA 57.279 45.000 17.89 1.51 45.07 4.26
1118 1258 3.223674 TGCCTCATTGATGATGCTCAT 57.776 42.857 17.89 0.00 45.07 2.90
1128 1268 3.704800 ATGATGCTCATCTCATGGGAG 57.295 47.619 0.00 1.05 42.80 4.30
1138 1278 1.486310 TCTCATGGGAGATTTGGTCCG 59.514 52.381 0.00 0.00 45.12 4.79
1139 1279 1.486310 CTCATGGGAGATTTGGTCCGA 59.514 52.381 0.00 0.00 44.26 4.55
1140 1280 1.486310 TCATGGGAGATTTGGTCCGAG 59.514 52.381 0.00 0.00 34.56 4.63
1141 1281 0.181350 ATGGGAGATTTGGTCCGAGC 59.819 55.000 0.00 0.00 34.56 5.03
1142 1282 1.521681 GGGAGATTTGGTCCGAGCG 60.522 63.158 0.00 0.00 34.56 5.03
1143 1283 2.174319 GGAGATTTGGTCCGAGCGC 61.174 63.158 0.00 0.00 0.00 5.92
1144 1284 1.447838 GAGATTTGGTCCGAGCGCA 60.448 57.895 11.47 0.00 0.00 6.09
1145 1285 1.003839 AGATTTGGTCCGAGCGCAA 60.004 52.632 11.47 0.00 0.00 4.85
1146 1286 1.134694 GATTTGGTCCGAGCGCAAC 59.865 57.895 11.47 1.68 0.00 4.17
1147 1287 2.563086 GATTTGGTCCGAGCGCAACG 62.563 60.000 11.47 15.25 0.00 4.10
1160 1300 1.412606 GCAACGCGAGAGTCTTTCG 59.587 57.895 15.93 8.37 40.85 3.46
1166 1306 2.797515 CGAGAGTCTTTCGCAACGT 58.202 52.632 0.00 0.00 0.00 3.99
1167 1307 1.129326 CGAGAGTCTTTCGCAACGTT 58.871 50.000 0.00 0.00 0.00 3.99
1168 1308 1.136884 CGAGAGTCTTTCGCAACGTTG 60.137 52.381 23.90 23.90 0.00 4.10
1178 1318 3.655481 CAACGTTGCAGTCCCTCC 58.345 61.111 16.51 0.00 0.00 4.30
1179 1319 2.030562 AACGTTGCAGTCCCTCCG 59.969 61.111 0.00 0.00 0.00 4.63
1180 1320 3.530910 AACGTTGCAGTCCCTCCGG 62.531 63.158 0.00 0.00 0.00 5.14
1181 1321 4.003788 CGTTGCAGTCCCTCCGGT 62.004 66.667 0.00 0.00 0.00 5.28
1182 1322 2.358737 GTTGCAGTCCCTCCGGTG 60.359 66.667 0.00 0.00 0.00 4.94
1183 1323 3.636231 TTGCAGTCCCTCCGGTGG 61.636 66.667 15.94 15.94 0.00 4.61
1184 1324 4.954118 TGCAGTCCCTCCGGTGGT 62.954 66.667 20.78 0.00 0.00 4.16
1185 1325 2.682494 GCAGTCCCTCCGGTGGTA 60.682 66.667 20.78 2.23 0.00 3.25
1186 1326 2.288025 GCAGTCCCTCCGGTGGTAA 61.288 63.158 20.78 6.31 0.00 2.85
1187 1327 1.623542 GCAGTCCCTCCGGTGGTAAT 61.624 60.000 20.78 1.52 0.00 1.89
1188 1328 0.464452 CAGTCCCTCCGGTGGTAATC 59.536 60.000 20.78 8.27 0.00 1.75
1189 1329 0.042131 AGTCCCTCCGGTGGTAATCA 59.958 55.000 20.78 0.00 0.00 2.57
1190 1330 1.129058 GTCCCTCCGGTGGTAATCAT 58.871 55.000 20.78 0.00 0.00 2.45
1191 1331 1.489230 GTCCCTCCGGTGGTAATCATT 59.511 52.381 20.78 0.00 0.00 2.57
1192 1332 2.701951 GTCCCTCCGGTGGTAATCATTA 59.298 50.000 20.78 0.00 0.00 1.90
1193 1333 3.135167 GTCCCTCCGGTGGTAATCATTAA 59.865 47.826 20.78 0.00 0.00 1.40
1194 1334 3.135167 TCCCTCCGGTGGTAATCATTAAC 59.865 47.826 20.78 0.00 0.00 2.01
1195 1335 3.118186 CCCTCCGGTGGTAATCATTAACA 60.118 47.826 20.78 0.00 0.00 2.41
1196 1336 4.519213 CCTCCGGTGGTAATCATTAACAA 58.481 43.478 14.67 0.00 34.03 2.83
1197 1337 4.574828 CCTCCGGTGGTAATCATTAACAAG 59.425 45.833 14.67 0.00 34.03 3.16
1198 1338 5.423704 TCCGGTGGTAATCATTAACAAGA 57.576 39.130 0.00 0.00 34.03 3.02
1199 1339 5.996644 TCCGGTGGTAATCATTAACAAGAT 58.003 37.500 0.00 0.00 34.03 2.40
1200 1340 6.053005 TCCGGTGGTAATCATTAACAAGATC 58.947 40.000 0.00 0.00 34.03 2.75
1201 1341 5.820423 CCGGTGGTAATCATTAACAAGATCA 59.180 40.000 0.00 0.00 34.03 2.92
1202 1342 6.317642 CCGGTGGTAATCATTAACAAGATCAA 59.682 38.462 0.00 0.00 34.03 2.57
1203 1343 7.409697 CGGTGGTAATCATTAACAAGATCAAG 58.590 38.462 0.00 0.00 34.03 3.02
1204 1344 7.196331 GGTGGTAATCATTAACAAGATCAAGC 58.804 38.462 0.00 0.00 34.03 4.01
1205 1345 7.148086 GGTGGTAATCATTAACAAGATCAAGCA 60.148 37.037 0.00 0.00 34.03 3.91
1206 1346 8.243426 GTGGTAATCATTAACAAGATCAAGCAA 58.757 33.333 0.00 0.00 34.03 3.91
1207 1347 8.461222 TGGTAATCATTAACAAGATCAAGCAAG 58.539 33.333 0.00 0.00 27.94 4.01
1208 1348 8.677300 GGTAATCATTAACAAGATCAAGCAAGA 58.323 33.333 0.00 0.00 0.00 3.02
1209 1349 9.713740 GTAATCATTAACAAGATCAAGCAAGAG 57.286 33.333 0.00 0.00 0.00 2.85
1210 1350 6.748333 TCATTAACAAGATCAAGCAAGAGG 57.252 37.500 0.00 0.00 0.00 3.69
1211 1351 6.240894 TCATTAACAAGATCAAGCAAGAGGT 58.759 36.000 0.00 0.00 0.00 3.85
1212 1352 5.947228 TTAACAAGATCAAGCAAGAGGTG 57.053 39.130 0.00 0.00 0.00 4.00
1213 1353 3.498774 ACAAGATCAAGCAAGAGGTGT 57.501 42.857 0.00 0.00 0.00 4.16
1214 1354 3.406764 ACAAGATCAAGCAAGAGGTGTC 58.593 45.455 0.00 0.00 0.00 3.67
1215 1355 2.376808 AGATCAAGCAAGAGGTGTCG 57.623 50.000 0.00 0.00 0.00 4.35
1216 1356 0.723981 GATCAAGCAAGAGGTGTCGC 59.276 55.000 0.00 0.00 0.00 5.19
1217 1357 0.322975 ATCAAGCAAGAGGTGTCGCT 59.677 50.000 0.00 0.00 35.90 4.93
1218 1358 0.106708 TCAAGCAAGAGGTGTCGCTT 59.893 50.000 0.00 0.00 45.24 4.68
1219 1359 0.947244 CAAGCAAGAGGTGTCGCTTT 59.053 50.000 0.00 0.00 42.60 3.51
1220 1360 0.947244 AAGCAAGAGGTGTCGCTTTG 59.053 50.000 0.00 0.00 41.80 2.77
1221 1361 0.886490 AGCAAGAGGTGTCGCTTTGG 60.886 55.000 0.00 0.00 30.61 3.28
1222 1362 1.856265 GCAAGAGGTGTCGCTTTGGG 61.856 60.000 0.00 0.00 30.61 4.12
1223 1363 1.600916 AAGAGGTGTCGCTTTGGGC 60.601 57.895 0.00 0.00 37.64 5.36
1224 1364 2.032681 GAGGTGTCGCTTTGGGCT 59.967 61.111 0.00 0.00 39.13 5.19
1225 1365 1.600916 GAGGTGTCGCTTTGGGCTT 60.601 57.895 0.00 0.00 39.13 4.35
1226 1366 1.152756 AGGTGTCGCTTTGGGCTTT 60.153 52.632 0.00 0.00 39.13 3.51
1227 1367 1.007387 GGTGTCGCTTTGGGCTTTG 60.007 57.895 0.00 0.00 39.13 2.77
1228 1368 1.007387 GTGTCGCTTTGGGCTTTGG 60.007 57.895 0.00 0.00 39.13 3.28
1229 1369 2.049156 GTCGCTTTGGGCTTTGGC 60.049 61.111 0.00 0.00 39.13 4.52
1230 1370 2.520500 TCGCTTTGGGCTTTGGCA 60.521 55.556 0.00 0.00 40.87 4.92
1231 1371 2.048877 CGCTTTGGGCTTTGGCAG 60.049 61.111 0.00 0.00 40.87 4.85
1232 1372 2.344872 GCTTTGGGCTTTGGCAGG 59.655 61.111 0.00 0.00 40.87 4.85
1233 1373 2.510551 GCTTTGGGCTTTGGCAGGT 61.511 57.895 0.00 0.00 40.87 4.00
1234 1374 1.368579 CTTTGGGCTTTGGCAGGTG 59.631 57.895 0.00 0.00 40.87 4.00
1235 1375 2.720358 CTTTGGGCTTTGGCAGGTGC 62.720 60.000 0.00 0.00 40.87 5.01
1258 1398 4.423732 CAAGCACTTGGGTATTGTAATGC 58.576 43.478 2.32 0.00 36.95 3.56
1259 1399 3.023832 AGCACTTGGGTATTGTAATGCC 58.976 45.455 3.44 3.44 40.06 4.40
1260 1400 2.223479 GCACTTGGGTATTGTAATGCCG 60.223 50.000 5.78 0.00 41.50 5.69
1261 1401 2.021457 ACTTGGGTATTGTAATGCCGC 58.979 47.619 5.78 1.01 41.50 6.53
1262 1402 1.002900 CTTGGGTATTGTAATGCCGCG 60.003 52.381 0.00 0.00 41.50 6.46
1263 1403 0.178301 TGGGTATTGTAATGCCGCGA 59.822 50.000 8.23 0.00 41.50 5.87
1264 1404 0.865769 GGGTATTGTAATGCCGCGAG 59.134 55.000 8.23 0.00 41.50 5.03
1265 1405 1.539496 GGGTATTGTAATGCCGCGAGA 60.539 52.381 8.23 0.00 41.50 4.04
1266 1406 1.792949 GGTATTGTAATGCCGCGAGAG 59.207 52.381 8.23 0.00 31.50 3.20
1267 1407 2.470821 GTATTGTAATGCCGCGAGAGT 58.529 47.619 8.23 0.00 0.00 3.24
1268 1408 2.882927 ATTGTAATGCCGCGAGAGTA 57.117 45.000 8.23 0.00 0.00 2.59
1269 1409 2.658373 TTGTAATGCCGCGAGAGTAA 57.342 45.000 8.23 0.00 0.00 2.24
1270 1410 2.882927 TGTAATGCCGCGAGAGTAAT 57.117 45.000 8.23 0.00 0.00 1.89
1271 1411 2.739292 TGTAATGCCGCGAGAGTAATC 58.261 47.619 8.23 0.00 0.00 1.75
1272 1412 2.361119 TGTAATGCCGCGAGAGTAATCT 59.639 45.455 8.23 0.00 0.00 2.40
1273 1413 2.604046 AATGCCGCGAGAGTAATCTT 57.396 45.000 8.23 0.00 0.00 2.40
1274 1414 2.604046 ATGCCGCGAGAGTAATCTTT 57.396 45.000 8.23 0.00 0.00 2.52
1275 1415 2.380084 TGCCGCGAGAGTAATCTTTT 57.620 45.000 8.23 0.00 0.00 2.27
1276 1416 3.513680 TGCCGCGAGAGTAATCTTTTA 57.486 42.857 8.23 0.00 0.00 1.52
1277 1417 3.184541 TGCCGCGAGAGTAATCTTTTAC 58.815 45.455 8.23 0.00 38.39 2.01
1278 1418 2.538861 GCCGCGAGAGTAATCTTTTACC 59.461 50.000 8.23 0.00 38.81 2.85
1279 1419 3.737355 GCCGCGAGAGTAATCTTTTACCT 60.737 47.826 8.23 0.00 38.81 3.08
1280 1420 4.430908 CCGCGAGAGTAATCTTTTACCTT 58.569 43.478 8.23 0.00 38.81 3.50
1281 1421 4.868734 CCGCGAGAGTAATCTTTTACCTTT 59.131 41.667 8.23 0.00 38.81 3.11
1282 1422 5.350640 CCGCGAGAGTAATCTTTTACCTTTT 59.649 40.000 8.23 0.00 38.81 2.27
1283 1423 6.241385 CGCGAGAGTAATCTTTTACCTTTTG 58.759 40.000 0.00 0.00 38.81 2.44
1284 1424 6.022208 GCGAGAGTAATCTTTTACCTTTTGC 58.978 40.000 0.00 0.00 38.81 3.68
1285 1425 6.543736 CGAGAGTAATCTTTTACCTTTTGCC 58.456 40.000 0.00 0.00 38.81 4.52
1286 1426 6.496338 AGAGTAATCTTTTACCTTTTGCCG 57.504 37.500 0.00 0.00 38.81 5.69
1287 1427 5.055642 AGTAATCTTTTACCTTTTGCCGC 57.944 39.130 0.00 0.00 38.81 6.53
1288 1428 4.765339 AGTAATCTTTTACCTTTTGCCGCT 59.235 37.500 0.00 0.00 38.81 5.52
1289 1429 4.600692 AATCTTTTACCTTTTGCCGCTT 57.399 36.364 0.00 0.00 0.00 4.68
1290 1430 3.363341 TCTTTTACCTTTTGCCGCTTG 57.637 42.857 0.00 0.00 0.00 4.01
1291 1431 1.792367 CTTTTACCTTTTGCCGCTTGC 59.208 47.619 0.00 0.00 41.77 4.01
1292 1432 0.318275 TTTACCTTTTGCCGCTTGCG 60.318 50.000 8.14 8.14 45.60 4.85
1293 1433 2.136196 TTACCTTTTGCCGCTTGCGG 62.136 55.000 27.32 27.32 45.60 5.69
1301 1441 3.357079 CCGCTTGCGGCTTTGTCT 61.357 61.111 21.17 0.00 39.13 3.41
1302 1442 2.127118 CGCTTGCGGCTTTGTCTG 60.127 61.111 7.16 0.00 39.13 3.51
1303 1443 2.606961 CGCTTGCGGCTTTGTCTGA 61.607 57.895 7.16 0.00 39.13 3.27
1304 1444 1.654220 GCTTGCGGCTTTGTCTGAA 59.346 52.632 0.00 0.00 38.06 3.02
1305 1445 0.030638 GCTTGCGGCTTTGTCTGAAA 59.969 50.000 0.00 0.00 38.06 2.69
1306 1446 1.758783 CTTGCGGCTTTGTCTGAAAC 58.241 50.000 0.00 0.00 0.00 2.78
1307 1447 0.383949 TTGCGGCTTTGTCTGAAACC 59.616 50.000 0.00 0.00 0.00 3.27
1308 1448 0.465460 TGCGGCTTTGTCTGAAACCT 60.465 50.000 0.00 0.00 0.00 3.50
1309 1449 0.668535 GCGGCTTTGTCTGAAACCTT 59.331 50.000 0.00 0.00 0.00 3.50
1310 1450 1.335051 GCGGCTTTGTCTGAAACCTTC 60.335 52.381 0.00 0.00 0.00 3.46
1311 1451 2.222027 CGGCTTTGTCTGAAACCTTCT 58.778 47.619 0.00 0.00 0.00 2.85
1312 1452 2.618709 CGGCTTTGTCTGAAACCTTCTT 59.381 45.455 0.00 0.00 0.00 2.52
1313 1453 3.304057 CGGCTTTGTCTGAAACCTTCTTC 60.304 47.826 0.00 0.00 0.00 2.87
1314 1454 3.885901 GGCTTTGTCTGAAACCTTCTTCT 59.114 43.478 0.00 0.00 0.00 2.85
1315 1455 4.339530 GGCTTTGTCTGAAACCTTCTTCTT 59.660 41.667 0.00 0.00 0.00 2.52
1316 1456 5.531287 GGCTTTGTCTGAAACCTTCTTCTTA 59.469 40.000 0.00 0.00 0.00 2.10
1317 1457 6.039382 GGCTTTGTCTGAAACCTTCTTCTTAA 59.961 38.462 0.00 0.00 0.00 1.85
1318 1458 7.255625 GGCTTTGTCTGAAACCTTCTTCTTAAT 60.256 37.037 0.00 0.00 0.00 1.40
1319 1459 7.805542 GCTTTGTCTGAAACCTTCTTCTTAATC 59.194 37.037 0.00 0.00 0.00 1.75
1320 1460 8.746052 TTTGTCTGAAACCTTCTTCTTAATCA 57.254 30.769 0.00 0.00 0.00 2.57
1321 1461 8.746052 TTGTCTGAAACCTTCTTCTTAATCAA 57.254 30.769 0.00 0.00 0.00 2.57
1322 1462 8.924511 TGTCTGAAACCTTCTTCTTAATCAAT 57.075 30.769 0.00 0.00 0.00 2.57
1323 1463 8.786898 TGTCTGAAACCTTCTTCTTAATCAATG 58.213 33.333 0.00 0.00 0.00 2.82
1324 1464 9.003658 GTCTGAAACCTTCTTCTTAATCAATGA 57.996 33.333 0.00 0.00 0.00 2.57
1325 1465 9.573166 TCTGAAACCTTCTTCTTAATCAATGAA 57.427 29.630 0.00 0.00 0.00 2.57
1329 1469 9.933723 AAACCTTCTTCTTAATCAATGAAATGG 57.066 29.630 0.00 0.00 0.00 3.16
1330 1470 7.550712 ACCTTCTTCTTAATCAATGAAATGGC 58.449 34.615 0.00 0.00 0.00 4.40
1331 1471 7.178983 ACCTTCTTCTTAATCAATGAAATGGCA 59.821 33.333 0.00 0.00 0.00 4.92
1332 1472 8.036575 CCTTCTTCTTAATCAATGAAATGGCAA 58.963 33.333 0.00 0.00 0.00 4.52
1333 1473 9.426837 CTTCTTCTTAATCAATGAAATGGCAAA 57.573 29.630 0.00 0.00 0.00 3.68
1334 1474 9.947433 TTCTTCTTAATCAATGAAATGGCAAAT 57.053 25.926 0.00 0.00 0.00 2.32
1335 1475 9.590451 TCTTCTTAATCAATGAAATGGCAAATC 57.410 29.630 0.00 0.00 0.00 2.17
1336 1476 9.595823 CTTCTTAATCAATGAAATGGCAAATCT 57.404 29.630 0.00 0.00 0.00 2.40
1337 1477 8.936070 TCTTAATCAATGAAATGGCAAATCTG 57.064 30.769 0.00 0.00 0.00 2.90
1338 1478 8.533657 TCTTAATCAATGAAATGGCAAATCTGT 58.466 29.630 0.00 0.00 0.00 3.41
1339 1479 9.158233 CTTAATCAATGAAATGGCAAATCTGTT 57.842 29.630 0.00 0.00 0.00 3.16
1340 1480 6.978343 ATCAATGAAATGGCAAATCTGTTG 57.022 33.333 0.00 3.67 0.00 3.33
1341 1481 4.691685 TCAATGAAATGGCAAATCTGTTGC 59.308 37.500 2.43 2.43 44.22 4.17
1348 1488 2.422276 GCAAATCTGTTGCCTCGTTT 57.578 45.000 0.00 0.00 39.38 3.60
1349 1489 2.319472 GCAAATCTGTTGCCTCGTTTC 58.681 47.619 0.00 0.00 39.38 2.78
1350 1490 2.287547 GCAAATCTGTTGCCTCGTTTCA 60.288 45.455 0.00 0.00 39.38 2.69
1351 1491 3.795150 GCAAATCTGTTGCCTCGTTTCAA 60.795 43.478 0.00 0.00 39.38 2.69
1352 1492 4.358851 CAAATCTGTTGCCTCGTTTCAAA 58.641 39.130 0.00 0.00 0.00 2.69
1353 1493 4.647424 AATCTGTTGCCTCGTTTCAAAA 57.353 36.364 0.00 0.00 0.00 2.44
1354 1494 4.647424 ATCTGTTGCCTCGTTTCAAAAA 57.353 36.364 0.00 0.00 0.00 1.94
1414 1581 1.865788 GCGCCATCACAAAGCTTCCA 61.866 55.000 0.00 0.00 0.00 3.53
1551 1732 6.113411 ACTAGTAGCAGTCAAGTTGTGTTTT 58.887 36.000 2.11 0.00 0.00 2.43
1557 1738 4.142381 GCAGTCAAGTTGTGTTTTCTTCCT 60.142 41.667 2.11 0.00 0.00 3.36
1561 1742 5.125578 GTCAAGTTGTGTTTTCTTCCTTCCT 59.874 40.000 2.11 0.00 0.00 3.36
1590 1771 0.248289 TTGCTAGTAACCGGCCTGTC 59.752 55.000 0.00 0.00 0.00 3.51
1684 1909 4.981806 TGGGCTGATATTTTCTTTTCCG 57.018 40.909 0.00 0.00 0.00 4.30
1704 1929 2.612972 CGGACCTGCTACAGTGTTGATT 60.613 50.000 9.00 0.00 0.00 2.57
1747 1980 4.893424 TTTGGAGCCTTGTTATATTCGC 57.107 40.909 0.00 0.00 0.00 4.70
1813 2075 5.997746 CACTCTTTTGTTTCAGTATCTGGGA 59.002 40.000 0.00 0.00 31.51 4.37
1851 2113 1.763968 TACTAGTCGACTGCCAGCAT 58.236 50.000 28.12 5.37 0.00 3.79
1859 2121 2.758423 TCGACTGCCAGCATTAGTTAGA 59.242 45.455 0.00 0.00 0.00 2.10
1868 2130 5.643777 GCCAGCATTAGTTAGAAGTTTGAGA 59.356 40.000 0.00 0.00 0.00 3.27
1945 2207 1.821136 GAAGCCTTTGCCAAGCTACAT 59.179 47.619 0.00 0.00 38.69 2.29
2028 2291 2.683968 TCTTCATCGGTCGTTTGAAGG 58.316 47.619 23.71 13.90 44.09 3.46
2099 2362 9.050601 AGTAAGAATTTGATACTAAGCATGAGC 57.949 33.333 0.00 0.00 42.56 4.26
2154 2426 9.435570 ACTAGTTGATAGGGATTATACACTGTT 57.564 33.333 0.00 0.00 35.63 3.16
2175 2447 6.255215 TGTTTGTGTTTTCTCTTTCGCTAAG 58.745 36.000 0.00 0.00 35.04 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.259425 GACGGTCGGTACTGTGCGT 62.259 63.158 0.64 0.00 45.47 5.24
98 99 5.437191 ACCTGGATCTAAACCCTAACAAG 57.563 43.478 0.00 0.00 0.00 3.16
114 115 7.012989 GCTAAACTTCTCTAAACAAAACCTGGA 59.987 37.037 0.00 0.00 0.00 3.86
115 116 7.013369 AGCTAAACTTCTCTAAACAAAACCTGG 59.987 37.037 0.00 0.00 0.00 4.45
171 181 0.390124 TTGACGGTCGCACTAACCTT 59.610 50.000 3.34 0.00 34.45 3.50
172 182 0.038526 CTTGACGGTCGCACTAACCT 60.039 55.000 3.34 0.00 34.45 3.50
196 207 5.130311 TCTCACAAATTGGGATTCCGATAGA 59.870 40.000 0.00 0.00 36.13 1.98
321 377 2.943036 ACCAACTCCACGGTGTTATT 57.057 45.000 7.45 0.00 33.05 1.40
452 514 0.394352 GATGTGAACTGGGGCCGATT 60.394 55.000 0.00 0.00 0.00 3.34
524 589 5.530915 TGGTTGTAGGACTGAAAACAATCTG 59.469 40.000 0.00 0.00 34.71 2.90
580 656 3.343941 AAAAAGTAGGTGCAGCGGATA 57.656 42.857 10.78 0.00 0.00 2.59
645 727 6.461110 AATTCTAGGATGAATGCAACCAAG 57.539 37.500 2.28 0.00 39.29 3.61
670 752 5.636123 TCCCAAACTAATCTAAACCAGCAA 58.364 37.500 0.00 0.00 0.00 3.91
718 800 3.120095 GGGGATTTCGGTAGACAAAAACG 60.120 47.826 0.00 0.00 0.00 3.60
737 819 2.185004 AACAATCAACTCGACAGGGG 57.815 50.000 0.00 0.00 0.00 4.79
743 825 7.659799 TCTTTTCTGGATAAACAATCAACTCGA 59.340 33.333 0.00 0.00 36.20 4.04
774 858 1.095600 GCGACAAAGATCCCCTTTCC 58.904 55.000 0.00 0.00 42.88 3.13
776 860 2.586648 AAGCGACAAAGATCCCCTTT 57.413 45.000 0.00 0.00 45.48 3.11
797 881 1.911357 TGGAGCAATCTGATGGACACT 59.089 47.619 0.00 0.00 0.00 3.55
861 947 1.880340 GACGATGCAGGCGGAGAAG 60.880 63.158 15.00 0.00 0.00 2.85
862 948 2.184322 GACGATGCAGGCGGAGAA 59.816 61.111 15.00 0.00 0.00 2.87
869 955 2.434884 AACAGCGGACGATGCAGG 60.435 61.111 10.09 0.00 34.49 4.85
871 957 2.434185 GGAACAGCGGACGATGCA 60.434 61.111 10.09 0.00 34.49 3.96
890 976 2.045926 GGGTGGCAGCGTGAGAAT 60.046 61.111 10.99 0.00 0.00 2.40
942 1082 0.615331 AGAAGCGGCATTGGAAGAGA 59.385 50.000 1.45 0.00 0.00 3.10
943 1083 1.457346 AAGAAGCGGCATTGGAAGAG 58.543 50.000 1.45 0.00 0.00 2.85
945 1085 2.730550 AAAAGAAGCGGCATTGGAAG 57.269 45.000 1.45 0.00 0.00 3.46
947 1087 1.605202 GCAAAAAGAAGCGGCATTGGA 60.605 47.619 1.45 0.00 0.00 3.53
948 1088 0.792031 GCAAAAAGAAGCGGCATTGG 59.208 50.000 1.45 0.00 0.00 3.16
956 1096 3.747099 TCTAGATGCGCAAAAAGAAGC 57.253 42.857 17.11 0.00 0.00 3.86
957 1097 5.736358 GTCATTCTAGATGCGCAAAAAGAAG 59.264 40.000 25.65 19.78 0.00 2.85
959 1099 4.694982 TGTCATTCTAGATGCGCAAAAAGA 59.305 37.500 17.11 14.55 0.00 2.52
963 1103 5.160699 GAATGTCATTCTAGATGCGCAAA 57.839 39.130 17.11 3.42 36.37 3.68
964 1104 4.801147 GAATGTCATTCTAGATGCGCAA 57.199 40.909 17.11 0.00 36.37 4.85
975 1115 1.017387 GCCACGGGAGAATGTCATTC 58.983 55.000 16.47 16.47 39.56 2.67
976 1116 0.620556 AGCCACGGGAGAATGTCATT 59.379 50.000 0.00 0.00 0.00 2.57
977 1117 0.179000 GAGCCACGGGAGAATGTCAT 59.821 55.000 0.00 0.00 0.00 3.06
978 1118 1.596934 GAGCCACGGGAGAATGTCA 59.403 57.895 0.00 0.00 0.00 3.58
979 1119 1.519455 CGAGCCACGGGAGAATGTC 60.519 63.158 0.00 0.00 38.46 3.06
980 1120 2.579201 CGAGCCACGGGAGAATGT 59.421 61.111 0.00 0.00 38.46 2.71
989 1129 3.499737 GGTGCATTCCGAGCCACG 61.500 66.667 0.00 0.00 42.18 4.94
990 1130 2.359850 TGGTGCATTCCGAGCCAC 60.360 61.111 0.00 0.00 0.00 5.01
991 1131 2.359850 GTGGTGCATTCCGAGCCA 60.360 61.111 0.00 0.00 0.00 4.75
992 1132 1.718757 GATGTGGTGCATTCCGAGCC 61.719 60.000 0.00 0.00 38.06 4.70
993 1133 0.745845 AGATGTGGTGCATTCCGAGC 60.746 55.000 0.00 0.00 38.06 5.03
994 1134 1.134580 AGAGATGTGGTGCATTCCGAG 60.135 52.381 0.00 0.00 38.06 4.63
995 1135 0.904649 AGAGATGTGGTGCATTCCGA 59.095 50.000 0.00 0.00 38.06 4.55
996 1136 2.159043 AGTAGAGATGTGGTGCATTCCG 60.159 50.000 0.00 0.00 38.06 4.30
997 1137 3.550437 AGTAGAGATGTGGTGCATTCC 57.450 47.619 0.00 0.00 38.06 3.01
998 1138 4.764172 AGAAGTAGAGATGTGGTGCATTC 58.236 43.478 0.00 0.00 38.06 2.67
999 1139 4.833478 AGAAGTAGAGATGTGGTGCATT 57.167 40.909 0.00 0.00 38.06 3.56
1000 1140 4.469227 AGAAGAAGTAGAGATGTGGTGCAT 59.531 41.667 0.00 0.00 41.24 3.96
1001 1141 3.834813 AGAAGAAGTAGAGATGTGGTGCA 59.165 43.478 0.00 0.00 0.00 4.57
1002 1142 4.464069 AGAAGAAGTAGAGATGTGGTGC 57.536 45.455 0.00 0.00 0.00 5.01
1003 1143 5.174395 CCAAGAAGAAGTAGAGATGTGGTG 58.826 45.833 0.00 0.00 0.00 4.17
1004 1144 4.841246 ACCAAGAAGAAGTAGAGATGTGGT 59.159 41.667 0.00 0.00 0.00 4.16
1005 1145 5.413309 ACCAAGAAGAAGTAGAGATGTGG 57.587 43.478 0.00 0.00 0.00 4.17
1006 1146 5.098893 CGACCAAGAAGAAGTAGAGATGTG 58.901 45.833 0.00 0.00 0.00 3.21
1007 1147 4.158764 CCGACCAAGAAGAAGTAGAGATGT 59.841 45.833 0.00 0.00 0.00 3.06
1008 1148 4.677584 CCGACCAAGAAGAAGTAGAGATG 58.322 47.826 0.00 0.00 0.00 2.90
1009 1149 3.131400 GCCGACCAAGAAGAAGTAGAGAT 59.869 47.826 0.00 0.00 0.00 2.75
1010 1150 2.492484 GCCGACCAAGAAGAAGTAGAGA 59.508 50.000 0.00 0.00 0.00 3.10
1011 1151 2.732597 CGCCGACCAAGAAGAAGTAGAG 60.733 54.545 0.00 0.00 0.00 2.43
1012 1152 1.201647 CGCCGACCAAGAAGAAGTAGA 59.798 52.381 0.00 0.00 0.00 2.59
1013 1153 1.201647 TCGCCGACCAAGAAGAAGTAG 59.798 52.381 0.00 0.00 0.00 2.57
1014 1154 1.201647 CTCGCCGACCAAGAAGAAGTA 59.798 52.381 0.00 0.00 0.00 2.24
1015 1155 0.038159 CTCGCCGACCAAGAAGAAGT 60.038 55.000 0.00 0.00 0.00 3.01
1016 1156 1.355066 GCTCGCCGACCAAGAAGAAG 61.355 60.000 0.00 0.00 0.00 2.85
1017 1157 1.374252 GCTCGCCGACCAAGAAGAA 60.374 57.895 0.00 0.00 0.00 2.52
1018 1158 2.261671 GCTCGCCGACCAAGAAGA 59.738 61.111 0.00 0.00 0.00 2.87
1019 1159 3.181967 CGCTCGCCGACCAAGAAG 61.182 66.667 0.00 0.00 40.02 2.85
1030 1170 3.354499 CTTTGACCGAAGCGCTCGC 62.354 63.158 12.06 5.07 46.71 5.03
1032 1172 0.741221 ATCCTTTGACCGAAGCGCTC 60.741 55.000 12.06 3.22 0.00 5.03
1033 1173 1.021390 CATCCTTTGACCGAAGCGCT 61.021 55.000 2.64 2.64 0.00 5.92
1034 1174 1.425428 CATCCTTTGACCGAAGCGC 59.575 57.895 0.00 0.00 0.00 5.92
1035 1175 0.673644 ACCATCCTTTGACCGAAGCG 60.674 55.000 0.00 0.00 0.00 4.68
1036 1176 0.804989 CACCATCCTTTGACCGAAGC 59.195 55.000 0.00 0.00 0.00 3.86
1037 1177 1.003118 TCCACCATCCTTTGACCGAAG 59.997 52.381 0.00 0.00 0.00 3.79
1038 1178 1.060729 TCCACCATCCTTTGACCGAA 58.939 50.000 0.00 0.00 0.00 4.30
1039 1179 1.060729 TTCCACCATCCTTTGACCGA 58.939 50.000 0.00 0.00 0.00 4.69
1040 1180 1.165270 GTTCCACCATCCTTTGACCG 58.835 55.000 0.00 0.00 0.00 4.79
1041 1181 1.165270 CGTTCCACCATCCTTTGACC 58.835 55.000 0.00 0.00 0.00 4.02
1042 1182 2.178912 TCGTTCCACCATCCTTTGAC 57.821 50.000 0.00 0.00 0.00 3.18
1043 1183 4.258543 GTTATCGTTCCACCATCCTTTGA 58.741 43.478 0.00 0.00 0.00 2.69
1044 1184 3.377172 GGTTATCGTTCCACCATCCTTTG 59.623 47.826 0.00 0.00 0.00 2.77
1045 1185 3.265995 AGGTTATCGTTCCACCATCCTTT 59.734 43.478 0.00 0.00 32.43 3.11
1046 1186 2.844348 AGGTTATCGTTCCACCATCCTT 59.156 45.455 0.00 0.00 32.43 3.36
1047 1187 2.478292 AGGTTATCGTTCCACCATCCT 58.522 47.619 0.00 0.00 32.43 3.24
1048 1188 3.203716 GAAGGTTATCGTTCCACCATCC 58.796 50.000 0.00 0.00 33.84 3.51
1049 1189 3.869065 TGAAGGTTATCGTTCCACCATC 58.131 45.455 4.29 0.00 37.57 3.51
1050 1190 3.517901 TCTGAAGGTTATCGTTCCACCAT 59.482 43.478 4.29 0.00 37.57 3.55
1051 1191 2.901192 TCTGAAGGTTATCGTTCCACCA 59.099 45.455 4.29 0.00 37.57 4.17
1052 1192 3.604875 TCTGAAGGTTATCGTTCCACC 57.395 47.619 4.29 0.00 37.57 4.61
1053 1193 4.267928 CGAATCTGAAGGTTATCGTTCCAC 59.732 45.833 4.29 0.00 37.57 4.02
1054 1194 4.081862 ACGAATCTGAAGGTTATCGTTCCA 60.082 41.667 0.00 0.00 40.22 3.53
1055 1195 4.430908 ACGAATCTGAAGGTTATCGTTCC 58.569 43.478 0.00 0.00 40.22 3.62
1056 1196 5.341617 AGACGAATCTGAAGGTTATCGTTC 58.658 41.667 0.00 0.29 42.81 3.95
1057 1197 5.326200 AGACGAATCTGAAGGTTATCGTT 57.674 39.130 0.00 0.00 42.81 3.85
1058 1198 4.496010 CGAGACGAATCTGAAGGTTATCGT 60.496 45.833 0.00 0.00 45.10 3.73
1059 1199 3.969352 CGAGACGAATCTGAAGGTTATCG 59.031 47.826 0.00 0.00 34.34 2.92
1060 1200 4.291783 CCGAGACGAATCTGAAGGTTATC 58.708 47.826 0.00 0.00 34.34 1.75
1061 1201 3.491104 GCCGAGACGAATCTGAAGGTTAT 60.491 47.826 0.00 0.00 34.34 1.89
1062 1202 2.159282 GCCGAGACGAATCTGAAGGTTA 60.159 50.000 0.00 0.00 34.34 2.85
1063 1203 1.404315 GCCGAGACGAATCTGAAGGTT 60.404 52.381 0.00 0.00 34.34 3.50
1064 1204 0.173708 GCCGAGACGAATCTGAAGGT 59.826 55.000 0.00 0.00 34.34 3.50
1065 1205 0.457851 AGCCGAGACGAATCTGAAGG 59.542 55.000 0.00 0.00 34.34 3.46
1066 1206 1.833860 GAGCCGAGACGAATCTGAAG 58.166 55.000 0.00 0.00 34.34 3.02
1067 1207 0.098905 CGAGCCGAGACGAATCTGAA 59.901 55.000 0.00 0.00 34.34 3.02
1068 1208 1.722082 CGAGCCGAGACGAATCTGA 59.278 57.895 0.00 0.00 34.34 3.27
1069 1209 1.941734 GCGAGCCGAGACGAATCTG 60.942 63.158 0.00 0.00 34.34 2.90
1070 1210 2.409651 GCGAGCCGAGACGAATCT 59.590 61.111 0.00 0.00 38.15 2.40
1071 1211 2.655685 GGCGAGCCGAGACGAATC 60.656 66.667 0.00 0.00 0.00 2.52
1072 1212 4.208686 GGGCGAGCCGAGACGAAT 62.209 66.667 8.14 0.00 36.85 3.34
1075 1215 4.735132 TTTGGGCGAGCCGAGACG 62.735 66.667 8.14 0.00 36.85 4.18
1076 1216 2.815647 CTTTGGGCGAGCCGAGAC 60.816 66.667 8.14 0.00 36.85 3.36
1077 1217 4.760047 GCTTTGGGCGAGCCGAGA 62.760 66.667 8.14 0.00 36.85 4.04
1082 1222 3.752339 CAAGGGCTTTGGGCGAGC 61.752 66.667 0.66 0.00 42.94 5.03
1083 1223 3.752339 GCAAGGGCTTTGGGCGAG 61.752 66.667 11.55 0.00 42.94 5.03
1086 1226 3.385384 GAGGCAAGGGCTTTGGGC 61.385 66.667 11.55 4.59 38.98 5.36
1087 1227 0.906282 AATGAGGCAAGGGCTTTGGG 60.906 55.000 11.55 0.00 38.98 4.12
1088 1228 0.248289 CAATGAGGCAAGGGCTTTGG 59.752 55.000 11.55 0.00 38.98 3.28
1089 1229 1.259609 TCAATGAGGCAAGGGCTTTG 58.740 50.000 4.78 4.78 38.98 2.77
1090 1230 1.829222 CATCAATGAGGCAAGGGCTTT 59.171 47.619 0.00 0.00 38.98 3.51
1091 1231 1.006281 TCATCAATGAGGCAAGGGCTT 59.994 47.619 0.00 0.00 38.98 4.35
1092 1232 0.627451 TCATCAATGAGGCAAGGGCT 59.373 50.000 0.00 0.00 42.48 5.19
1093 1233 1.340248 CATCATCAATGAGGCAAGGGC 59.660 52.381 0.00 0.00 40.64 5.19
1109 1249 2.686119 TCTCCCATGAGATGAGCATCA 58.314 47.619 12.54 0.00 42.67 3.07
1119 1259 1.486310 TCGGACCAAATCTCCCATGAG 59.514 52.381 0.00 0.00 40.17 2.90
1120 1260 1.486310 CTCGGACCAAATCTCCCATGA 59.514 52.381 0.00 0.00 0.00 3.07
1121 1261 1.959042 CTCGGACCAAATCTCCCATG 58.041 55.000 0.00 0.00 0.00 3.66
1122 1262 0.181350 GCTCGGACCAAATCTCCCAT 59.819 55.000 0.00 0.00 0.00 4.00
1123 1263 1.602237 GCTCGGACCAAATCTCCCA 59.398 57.895 0.00 0.00 0.00 4.37
1124 1264 1.521681 CGCTCGGACCAAATCTCCC 60.522 63.158 0.00 0.00 0.00 4.30
1125 1265 2.174319 GCGCTCGGACCAAATCTCC 61.174 63.158 0.00 0.00 0.00 3.71
1126 1266 1.019278 TTGCGCTCGGACCAAATCTC 61.019 55.000 9.73 0.00 0.00 2.75
1127 1267 1.003839 TTGCGCTCGGACCAAATCT 60.004 52.632 9.73 0.00 0.00 2.40
1128 1268 1.134694 GTTGCGCTCGGACCAAATC 59.865 57.895 9.73 0.00 0.00 2.17
1129 1269 2.677003 CGTTGCGCTCGGACCAAAT 61.677 57.895 9.73 0.00 0.00 2.32
1130 1270 3.342627 CGTTGCGCTCGGACCAAA 61.343 61.111 9.73 0.00 0.00 3.28
1142 1282 1.412606 CGAAAGACTCTCGCGTTGC 59.587 57.895 5.77 0.00 0.00 4.17
1148 1288 1.129326 AACGTTGCGAAAGACTCTCG 58.871 50.000 0.00 0.00 39.33 4.04
1149 1289 1.397315 GCAACGTTGCGAAAGACTCTC 60.397 52.381 34.84 7.88 45.11 3.20
1150 1290 0.582005 GCAACGTTGCGAAAGACTCT 59.418 50.000 34.84 0.00 45.11 3.24
1151 1291 3.058457 GCAACGTTGCGAAAGACTC 57.942 52.632 34.84 9.14 45.11 3.36
1175 1315 5.424757 TCTTGTTAATGATTACCACCGGAG 58.575 41.667 9.46 0.00 0.00 4.63
1176 1316 5.423704 TCTTGTTAATGATTACCACCGGA 57.576 39.130 9.46 0.00 0.00 5.14
1177 1317 5.820423 TGATCTTGTTAATGATTACCACCGG 59.180 40.000 0.00 0.00 0.00 5.28
1178 1318 6.918892 TGATCTTGTTAATGATTACCACCG 57.081 37.500 0.00 0.00 0.00 4.94
1179 1319 7.148086 TGCTTGATCTTGTTAATGATTACCACC 60.148 37.037 0.00 0.00 0.00 4.61
1180 1320 7.761409 TGCTTGATCTTGTTAATGATTACCAC 58.239 34.615 0.00 0.00 0.00 4.16
1181 1321 7.936496 TGCTTGATCTTGTTAATGATTACCA 57.064 32.000 0.00 0.00 0.00 3.25
1182 1322 8.677300 TCTTGCTTGATCTTGTTAATGATTACC 58.323 33.333 0.00 0.00 0.00 2.85
1183 1323 9.713740 CTCTTGCTTGATCTTGTTAATGATTAC 57.286 33.333 0.00 0.00 0.00 1.89
1184 1324 8.896744 CCTCTTGCTTGATCTTGTTAATGATTA 58.103 33.333 0.00 0.00 0.00 1.75
1185 1325 7.395489 ACCTCTTGCTTGATCTTGTTAATGATT 59.605 33.333 0.00 0.00 0.00 2.57
1186 1326 6.888632 ACCTCTTGCTTGATCTTGTTAATGAT 59.111 34.615 0.00 0.00 0.00 2.45
1187 1327 6.149973 CACCTCTTGCTTGATCTTGTTAATGA 59.850 38.462 0.00 0.00 0.00 2.57
1188 1328 6.072286 ACACCTCTTGCTTGATCTTGTTAATG 60.072 38.462 0.00 0.00 0.00 1.90
1189 1329 6.006449 ACACCTCTTGCTTGATCTTGTTAAT 58.994 36.000 0.00 0.00 0.00 1.40
1190 1330 5.376625 ACACCTCTTGCTTGATCTTGTTAA 58.623 37.500 0.00 0.00 0.00 2.01
1191 1331 4.973168 ACACCTCTTGCTTGATCTTGTTA 58.027 39.130 0.00 0.00 0.00 2.41
1192 1332 3.817647 GACACCTCTTGCTTGATCTTGTT 59.182 43.478 0.00 0.00 0.00 2.83
1193 1333 3.406764 GACACCTCTTGCTTGATCTTGT 58.593 45.455 0.00 0.00 0.00 3.16
1194 1334 2.414481 CGACACCTCTTGCTTGATCTTG 59.586 50.000 0.00 0.00 0.00 3.02
1195 1335 2.693069 CGACACCTCTTGCTTGATCTT 58.307 47.619 0.00 0.00 0.00 2.40
1196 1336 1.674221 GCGACACCTCTTGCTTGATCT 60.674 52.381 0.00 0.00 0.00 2.75
1197 1337 0.723981 GCGACACCTCTTGCTTGATC 59.276 55.000 0.00 0.00 0.00 2.92
1198 1338 0.322975 AGCGACACCTCTTGCTTGAT 59.677 50.000 0.00 0.00 32.89 2.57
1199 1339 0.106708 AAGCGACACCTCTTGCTTGA 59.893 50.000 0.00 0.00 45.29 3.02
1200 1340 0.947244 AAAGCGACACCTCTTGCTTG 59.053 50.000 0.00 0.00 46.23 4.01
1202 1342 0.886490 CCAAAGCGACACCTCTTGCT 60.886 55.000 0.00 0.00 39.89 3.91
1203 1343 1.576421 CCAAAGCGACACCTCTTGC 59.424 57.895 0.00 0.00 0.00 4.01
1204 1344 1.856265 GCCCAAAGCGACACCTCTTG 61.856 60.000 0.00 0.00 0.00 3.02
1205 1345 1.600916 GCCCAAAGCGACACCTCTT 60.601 57.895 0.00 0.00 0.00 2.85
1206 1346 2.032681 GCCCAAAGCGACACCTCT 59.967 61.111 0.00 0.00 0.00 3.69
1215 1355 2.344872 CCTGCCAAAGCCCAAAGC 59.655 61.111 0.00 0.00 44.25 3.51
1216 1356 1.368579 CACCTGCCAAAGCCCAAAG 59.631 57.895 0.00 0.00 38.69 2.77
1217 1357 2.806009 GCACCTGCCAAAGCCCAAA 61.806 57.895 0.00 0.00 38.69 3.28
1218 1358 3.233231 GCACCTGCCAAAGCCCAA 61.233 61.111 0.00 0.00 38.69 4.12
1236 1376 4.423732 GCATTACAATACCCAAGTGCTTG 58.576 43.478 5.03 5.03 40.13 4.01
1237 1377 3.447229 GGCATTACAATACCCAAGTGCTT 59.553 43.478 0.00 0.00 0.00 3.91
1238 1378 3.023832 GGCATTACAATACCCAAGTGCT 58.976 45.455 0.00 0.00 0.00 4.40
1239 1379 2.223479 CGGCATTACAATACCCAAGTGC 60.223 50.000 0.00 0.00 0.00 4.40
1240 1380 2.223479 GCGGCATTACAATACCCAAGTG 60.223 50.000 0.00 0.00 0.00 3.16
1241 1381 2.021457 GCGGCATTACAATACCCAAGT 58.979 47.619 0.00 0.00 0.00 3.16
1242 1382 1.002900 CGCGGCATTACAATACCCAAG 60.003 52.381 0.00 0.00 0.00 3.61
1243 1383 1.018148 CGCGGCATTACAATACCCAA 58.982 50.000 0.00 0.00 0.00 4.12
1244 1384 0.178301 TCGCGGCATTACAATACCCA 59.822 50.000 6.13 0.00 0.00 4.51
1245 1385 0.865769 CTCGCGGCATTACAATACCC 59.134 55.000 6.13 0.00 0.00 3.69
1246 1386 1.792949 CTCTCGCGGCATTACAATACC 59.207 52.381 6.13 0.00 0.00 2.73
1247 1387 2.470821 ACTCTCGCGGCATTACAATAC 58.529 47.619 6.13 0.00 0.00 1.89
1248 1388 2.882927 ACTCTCGCGGCATTACAATA 57.117 45.000 6.13 0.00 0.00 1.90
1249 1389 2.882927 TACTCTCGCGGCATTACAAT 57.117 45.000 6.13 0.00 0.00 2.71
1250 1390 2.658373 TTACTCTCGCGGCATTACAA 57.342 45.000 6.13 0.00 0.00 2.41
1251 1391 2.361119 AGATTACTCTCGCGGCATTACA 59.639 45.455 6.13 0.00 0.00 2.41
1252 1392 3.014604 AGATTACTCTCGCGGCATTAC 57.985 47.619 6.13 0.00 0.00 1.89
1253 1393 3.728076 AAGATTACTCTCGCGGCATTA 57.272 42.857 6.13 0.00 0.00 1.90
1254 1394 2.604046 AAGATTACTCTCGCGGCATT 57.396 45.000 6.13 0.00 0.00 3.56
1255 1395 2.604046 AAAGATTACTCTCGCGGCAT 57.396 45.000 6.13 0.00 0.00 4.40
1256 1396 2.380084 AAAAGATTACTCTCGCGGCA 57.620 45.000 6.13 0.00 0.00 5.69
1257 1397 2.538861 GGTAAAAGATTACTCTCGCGGC 59.461 50.000 6.13 0.00 41.01 6.53
1258 1398 4.043037 AGGTAAAAGATTACTCTCGCGG 57.957 45.455 6.13 0.00 41.01 6.46
1259 1399 6.241385 CAAAAGGTAAAAGATTACTCTCGCG 58.759 40.000 0.00 0.00 41.01 5.87
1260 1400 6.022208 GCAAAAGGTAAAAGATTACTCTCGC 58.978 40.000 0.00 0.00 41.01 5.03
1261 1401 6.543736 GGCAAAAGGTAAAAGATTACTCTCG 58.456 40.000 0.00 0.00 41.01 4.04
1262 1402 6.543736 CGGCAAAAGGTAAAAGATTACTCTC 58.456 40.000 0.00 0.00 41.01 3.20
1263 1403 5.106277 GCGGCAAAAGGTAAAAGATTACTCT 60.106 40.000 0.00 0.00 41.01 3.24
1264 1404 5.093457 GCGGCAAAAGGTAAAAGATTACTC 58.907 41.667 0.00 0.00 41.01 2.59
1265 1405 4.765339 AGCGGCAAAAGGTAAAAGATTACT 59.235 37.500 1.45 0.00 41.01 2.24
1266 1406 5.055642 AGCGGCAAAAGGTAAAAGATTAC 57.944 39.130 1.45 0.00 40.60 1.89
1267 1407 5.465935 CAAGCGGCAAAAGGTAAAAGATTA 58.534 37.500 1.45 0.00 0.00 1.75
1268 1408 4.306600 CAAGCGGCAAAAGGTAAAAGATT 58.693 39.130 1.45 0.00 0.00 2.40
1269 1409 3.860754 GCAAGCGGCAAAAGGTAAAAGAT 60.861 43.478 1.45 0.00 43.97 2.40
1270 1410 2.544903 GCAAGCGGCAAAAGGTAAAAGA 60.545 45.455 1.45 0.00 43.97 2.52
1271 1411 1.792367 GCAAGCGGCAAAAGGTAAAAG 59.208 47.619 1.45 0.00 43.97 2.27
1272 1412 1.859383 GCAAGCGGCAAAAGGTAAAA 58.141 45.000 1.45 0.00 43.97 1.52
1273 1413 0.318275 CGCAAGCGGCAAAAGGTAAA 60.318 50.000 6.55 0.00 45.17 2.01
1274 1414 1.284408 CGCAAGCGGCAAAAGGTAA 59.716 52.632 6.55 0.00 45.17 2.85
1275 1415 2.950673 CGCAAGCGGCAAAAGGTA 59.049 55.556 6.55 0.00 45.17 3.08
1286 1426 0.030638 TTTCAGACAAAGCCGCAAGC 59.969 50.000 0.00 0.00 44.25 4.01
1287 1427 1.600413 GGTTTCAGACAAAGCCGCAAG 60.600 52.381 0.00 0.00 0.00 4.01
1288 1428 0.383949 GGTTTCAGACAAAGCCGCAA 59.616 50.000 0.00 0.00 0.00 4.85
1289 1429 0.465460 AGGTTTCAGACAAAGCCGCA 60.465 50.000 0.00 0.00 34.92 5.69
1290 1430 0.668535 AAGGTTTCAGACAAAGCCGC 59.331 50.000 0.00 0.00 34.92 6.53
1291 1431 2.222027 AGAAGGTTTCAGACAAAGCCG 58.778 47.619 0.00 0.00 34.92 5.52
1292 1432 3.885901 AGAAGAAGGTTTCAGACAAAGCC 59.114 43.478 0.00 0.00 0.00 4.35
1293 1433 5.506686 AAGAAGAAGGTTTCAGACAAAGC 57.493 39.130 0.00 0.00 0.00 3.51
1294 1434 8.840321 TGATTAAGAAGAAGGTTTCAGACAAAG 58.160 33.333 0.00 0.00 0.00 2.77
1295 1435 8.746052 TGATTAAGAAGAAGGTTTCAGACAAA 57.254 30.769 0.00 0.00 0.00 2.83
1296 1436 8.746052 TTGATTAAGAAGAAGGTTTCAGACAA 57.254 30.769 0.00 0.00 0.00 3.18
1297 1437 8.786898 CATTGATTAAGAAGAAGGTTTCAGACA 58.213 33.333 0.00 0.00 0.00 3.41
1298 1438 9.003658 TCATTGATTAAGAAGAAGGTTTCAGAC 57.996 33.333 0.00 0.00 0.00 3.51
1299 1439 9.573166 TTCATTGATTAAGAAGAAGGTTTCAGA 57.427 29.630 0.00 0.00 0.00 3.27
1303 1443 9.933723 CCATTTCATTGATTAAGAAGAAGGTTT 57.066 29.630 0.00 0.00 0.00 3.27
1304 1444 8.037166 GCCATTTCATTGATTAAGAAGAAGGTT 58.963 33.333 0.00 0.00 0.00 3.50
1305 1445 7.178983 TGCCATTTCATTGATTAAGAAGAAGGT 59.821 33.333 0.00 0.00 0.00 3.50
1306 1446 7.549839 TGCCATTTCATTGATTAAGAAGAAGG 58.450 34.615 0.00 0.00 0.00 3.46
1307 1447 8.991243 TTGCCATTTCATTGATTAAGAAGAAG 57.009 30.769 0.00 0.00 0.00 2.85
1308 1448 9.947433 ATTTGCCATTTCATTGATTAAGAAGAA 57.053 25.926 0.00 0.00 0.00 2.52
1309 1449 9.590451 GATTTGCCATTTCATTGATTAAGAAGA 57.410 29.630 0.00 0.00 0.00 2.87
1310 1450 9.595823 AGATTTGCCATTTCATTGATTAAGAAG 57.404 29.630 0.00 0.00 0.00 2.85
1311 1451 9.373603 CAGATTTGCCATTTCATTGATTAAGAA 57.626 29.630 0.00 0.00 0.00 2.52
1312 1452 8.533657 ACAGATTTGCCATTTCATTGATTAAGA 58.466 29.630 0.00 0.00 0.00 2.10
1313 1453 8.712285 ACAGATTTGCCATTTCATTGATTAAG 57.288 30.769 0.00 0.00 0.00 1.85
1314 1454 8.937884 CAACAGATTTGCCATTTCATTGATTAA 58.062 29.630 0.00 0.00 0.00 1.40
1315 1455 7.064847 GCAACAGATTTGCCATTTCATTGATTA 59.935 33.333 0.00 0.00 39.38 1.75
1316 1456 6.128117 GCAACAGATTTGCCATTTCATTGATT 60.128 34.615 0.00 0.00 39.38 2.57
1317 1457 5.353123 GCAACAGATTTGCCATTTCATTGAT 59.647 36.000 0.00 0.00 39.38 2.57
1318 1458 4.691685 GCAACAGATTTGCCATTTCATTGA 59.308 37.500 0.00 0.00 39.38 2.57
1319 1459 4.965062 GCAACAGATTTGCCATTTCATTG 58.035 39.130 0.00 0.00 39.38 2.82
1329 1469 2.287547 TGAAACGAGGCAACAGATTTGC 60.288 45.455 0.17 0.17 44.22 3.68
1330 1470 3.624326 TGAAACGAGGCAACAGATTTG 57.376 42.857 0.00 0.00 41.41 2.32
1331 1471 4.647424 TTTGAAACGAGGCAACAGATTT 57.353 36.364 0.00 0.00 41.41 2.17
1332 1472 4.647424 TTTTGAAACGAGGCAACAGATT 57.353 36.364 0.00 0.00 41.41 2.40
1333 1473 4.647424 TTTTTGAAACGAGGCAACAGAT 57.353 36.364 0.00 0.00 41.41 2.90
1396 1545 0.169672 CTGGAAGCTTTGTGATGGCG 59.830 55.000 0.00 0.00 0.00 5.69
1401 1550 2.294233 GCAATCACTGGAAGCTTTGTGA 59.706 45.455 23.32 23.32 42.50 3.58
1403 1552 2.555757 GAGCAATCACTGGAAGCTTTGT 59.444 45.455 0.00 0.00 38.22 2.83
1561 1742 8.158789 AGGCCGGTTACTAGCAAATAATATAAA 58.841 33.333 1.90 0.00 0.00 1.40
1684 1909 2.770164 ATCAACACTGTAGCAGGTCC 57.230 50.000 1.08 0.00 35.51 4.46
1704 1929 2.224185 ACAGATGATAAATGGCGCGGTA 60.224 45.455 8.83 0.00 0.00 4.02
1859 2121 9.768662 ATGCAAGTTGAATAATTTCTCAAACTT 57.231 25.926 7.16 0.00 36.66 2.66
1887 2149 5.022282 AGTGGCACAATTTAGCAAAAAGT 57.978 34.783 21.41 0.00 44.16 2.66
1951 2214 4.292643 GGGACCTGTACTTATTGGTAGGA 58.707 47.826 0.00 0.00 32.30 2.94
2154 2426 6.671614 TTCTTAGCGAAAGAGAAAACACAA 57.328 33.333 4.97 0.00 44.95 3.33
2175 2447 1.106285 GGGTTGATCCTGTGCCATTC 58.894 55.000 0.00 0.00 36.25 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.