Multiple sequence alignment - TraesCS7D01G302200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G302200 chr7D 100.000 3410 0 0 1 3410 382284879 382288288 0.000000e+00 6298
1 TraesCS7D01G302200 chr7A 95.998 1924 47 14 643 2559 430322278 430324178 0.000000e+00 3099
2 TraesCS7D01G302200 chr7A 96.503 858 24 3 2557 3410 430324274 430325129 0.000000e+00 1413
3 TraesCS7D01G302200 chr7A 80.537 298 40 12 152 438 430320038 430320328 2.670000e-51 213
4 TraesCS7D01G302200 chr7A 94.845 97 4 1 1 97 430319832 430319927 2.120000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G302200 chr7D 382284879 382288288 3409 False 6298.00 6298 100.00000 1 3410 1 chr7D.!!$F1 3409
1 TraesCS7D01G302200 chr7A 430319832 430325129 5297 False 1218.75 3099 91.97075 1 3410 4 chr7A.!!$F1 3409

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 174 0.109781 CGGTTTGATGTGGAAAGGCG 60.110 55.0 0.0 0.0 0.0 5.52 F
607 1940 0.174617 CGTTCAAGAGAGAGAGCCCC 59.825 60.0 0.0 0.0 0.0 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1166 3013 0.443869 CACAAACTGGGCGAATCTCG 59.556 55.0 0.00 0.00 43.89 4.04 R
2603 4548 0.611714 GAGCTTAACCGGTTCCTCCA 59.388 55.0 26.16 2.01 35.57 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.700439 TTGGTTTTCCTTTTAGTAGTTATGCT 57.300 30.769 0.00 0.00 41.38 3.79
39 40 9.750882 GTTTTCCTTTTAGTAGTTATGCTAACG 57.249 33.333 0.00 0.00 33.91 3.18
48 49 6.113411 AGTAGTTATGCTAACGAAGGCAATT 58.887 36.000 0.00 0.00 41.90 2.32
78 79 6.428159 ACTCACTGCTATTTTCTTGTACTTGG 59.572 38.462 0.00 0.00 0.00 3.61
97 98 2.330216 GGTAGGTAGGGAGATGTGCAT 58.670 52.381 0.00 0.00 0.00 3.96
99 100 2.180946 AGGTAGGGAGATGTGCATGA 57.819 50.000 0.00 0.00 0.00 3.07
103 104 0.622738 AGGGAGATGTGCATGACCCT 60.623 55.000 15.31 15.31 37.88 4.34
105 106 1.341383 GGGAGATGTGCATGACCCTTT 60.341 52.381 0.00 0.00 33.10 3.11
106 107 1.747355 GGAGATGTGCATGACCCTTTG 59.253 52.381 0.00 0.00 0.00 2.77
107 108 1.133790 GAGATGTGCATGACCCTTTGC 59.866 52.381 0.00 0.00 39.33 3.68
108 109 0.174162 GATGTGCATGACCCTTTGCC 59.826 55.000 0.00 0.00 38.08 4.52
109 110 1.597797 ATGTGCATGACCCTTTGCCG 61.598 55.000 0.00 0.00 38.08 5.69
111 112 1.228398 TGCATGACCCTTTGCCGAA 60.228 52.632 0.00 0.00 38.08 4.30
142 170 1.611491 GCTTCCGGTTTGATGTGGAAA 59.389 47.619 0.00 0.00 39.83 3.13
146 174 0.109781 CGGTTTGATGTGGAAAGGCG 60.110 55.000 0.00 0.00 0.00 5.52
186 243 7.864379 GTGATCATGAGGCCAACAAATTAATAG 59.136 37.037 5.01 0.00 0.00 1.73
188 245 8.995027 ATCATGAGGCCAACAAATTAATAGTA 57.005 30.769 5.01 0.00 0.00 1.82
189 246 8.995027 TCATGAGGCCAACAAATTAATAGTAT 57.005 30.769 5.01 0.00 0.00 2.12
190 247 9.066892 TCATGAGGCCAACAAATTAATAGTATC 57.933 33.333 5.01 0.00 0.00 2.24
191 248 8.849168 CATGAGGCCAACAAATTAATAGTATCA 58.151 33.333 5.01 0.00 0.00 2.15
192 249 8.995027 TGAGGCCAACAAATTAATAGTATCAT 57.005 30.769 5.01 0.00 0.00 2.45
193 250 9.420118 TGAGGCCAACAAATTAATAGTATCATT 57.580 29.630 5.01 0.00 0.00 2.57
244 319 8.922058 ATGTGTTTGCAGAGAAATTTGATATC 57.078 30.769 0.00 0.00 0.00 1.63
245 320 7.022979 TGTGTTTGCAGAGAAATTTGATATCG 58.977 34.615 0.00 0.00 0.00 2.92
247 322 5.756195 TTGCAGAGAAATTTGATATCGGG 57.244 39.130 0.00 0.00 0.00 5.14
267 342 4.617298 CGGGGTTGTGTTTGACATTATTCC 60.617 45.833 0.00 0.00 33.40 3.01
292 367 6.074302 CGGATTACTGTAATCTCATCGTTTGG 60.074 42.308 29.50 9.54 43.15 3.28
301 376 3.804036 TCTCATCGTTTGGTTGACTGTT 58.196 40.909 0.00 0.00 0.00 3.16
304 379 5.124776 TCTCATCGTTTGGTTGACTGTTTTT 59.875 36.000 0.00 0.00 0.00 1.94
305 380 5.336744 TCATCGTTTGGTTGACTGTTTTTC 58.663 37.500 0.00 0.00 0.00 2.29
317 392 6.166984 TGACTGTTTTTCCATATTTTGCCA 57.833 33.333 0.00 0.00 0.00 4.92
347 422 1.872313 CCTCTCACGGTATACTCGTCC 59.128 57.143 14.07 0.00 38.94 4.79
351 426 2.352651 CTCACGGTATACTCGTCCGAAA 59.647 50.000 14.07 0.00 46.05 3.46
352 427 2.095853 TCACGGTATACTCGTCCGAAAC 59.904 50.000 14.07 0.00 46.05 2.78
353 428 2.083774 ACGGTATACTCGTCCGAAACA 58.916 47.619 11.95 0.00 46.05 2.83
354 429 2.684881 ACGGTATACTCGTCCGAAACAT 59.315 45.455 11.95 0.00 46.05 2.71
355 430 3.876914 ACGGTATACTCGTCCGAAACATA 59.123 43.478 11.95 0.00 46.05 2.29
356 431 4.214437 CGGTATACTCGTCCGAAACATAC 58.786 47.826 2.25 0.00 46.05 2.39
357 432 4.024556 CGGTATACTCGTCCGAAACATACT 60.025 45.833 2.25 0.00 46.05 2.12
358 433 5.447573 GGTATACTCGTCCGAAACATACTC 58.552 45.833 2.25 3.58 0.00 2.59
359 434 2.935481 ACTCGTCCGAAACATACTCC 57.065 50.000 0.00 0.00 0.00 3.85
391 468 3.825585 TCATGCTGGCTGAAAACATAACA 59.174 39.130 0.00 0.00 0.00 2.41
392 469 4.280425 TCATGCTGGCTGAAAACATAACAA 59.720 37.500 0.00 0.00 0.00 2.83
395 472 6.528537 TGCTGGCTGAAAACATAACAATAT 57.471 33.333 0.00 0.00 0.00 1.28
399 476 7.973388 GCTGGCTGAAAACATAACAATATACAA 59.027 33.333 0.00 0.00 0.00 2.41
419 496 4.453136 ACAAACAGCAATTGATGGAAATGC 59.547 37.500 26.12 0.03 35.42 3.56
420 497 3.965379 ACAGCAATTGATGGAAATGCA 57.035 38.095 26.12 0.00 35.42 3.96
421 498 3.592059 ACAGCAATTGATGGAAATGCAC 58.408 40.909 26.12 0.00 35.42 4.57
422 499 2.933906 CAGCAATTGATGGAAATGCACC 59.066 45.455 15.94 0.00 0.00 5.01
439 517 3.854669 CGGGCAGGCCTACCTCTG 61.855 72.222 21.89 8.39 46.34 3.35
441 519 2.301738 GGGCAGGCCTACCTCTGTT 61.302 63.158 21.89 0.00 46.34 3.16
442 520 1.078143 GGCAGGCCTACCTCTGTTG 60.078 63.158 15.54 0.00 46.34 3.33
443 521 1.679898 GCAGGCCTACCTCTGTTGT 59.320 57.895 3.98 0.00 46.34 3.32
444 522 0.902531 GCAGGCCTACCTCTGTTGTA 59.097 55.000 3.98 0.00 46.34 2.41
445 523 1.134670 GCAGGCCTACCTCTGTTGTAG 60.135 57.143 3.98 0.00 46.34 2.74
446 524 2.457598 CAGGCCTACCTCTGTTGTAGA 58.542 52.381 3.98 0.00 46.34 2.59
447 525 2.832129 CAGGCCTACCTCTGTTGTAGAA 59.168 50.000 3.98 0.00 46.34 2.10
448 526 3.260884 CAGGCCTACCTCTGTTGTAGAAA 59.739 47.826 3.98 0.00 46.34 2.52
450 528 4.020128 AGGCCTACCTCTGTTGTAGAAAAG 60.020 45.833 1.29 0.00 46.34 2.27
451 529 3.685272 GCCTACCTCTGTTGTAGAAAAGC 59.315 47.826 0.00 0.00 38.34 3.51
452 530 4.563786 GCCTACCTCTGTTGTAGAAAAGCT 60.564 45.833 0.00 0.00 38.34 3.74
453 531 5.337330 GCCTACCTCTGTTGTAGAAAAGCTA 60.337 44.000 0.00 0.00 38.34 3.32
454 532 6.698380 CCTACCTCTGTTGTAGAAAAGCTAA 58.302 40.000 0.00 0.00 38.34 3.09
455 533 6.590677 CCTACCTCTGTTGTAGAAAAGCTAAC 59.409 42.308 0.00 0.00 38.34 2.34
456 534 4.989168 ACCTCTGTTGTAGAAAAGCTAACG 59.011 41.667 0.00 0.00 34.32 3.18
457 535 4.989168 CCTCTGTTGTAGAAAAGCTAACGT 59.011 41.667 0.00 0.00 34.32 3.99
459 537 5.839621 TCTGTTGTAGAAAAGCTAACGTCT 58.160 37.500 0.00 0.00 30.84 4.18
460 538 5.690409 TCTGTTGTAGAAAAGCTAACGTCTG 59.310 40.000 0.00 0.00 30.84 3.51
463 541 4.806330 TGTAGAAAAGCTAACGTCTGAGG 58.194 43.478 0.00 0.00 0.00 3.86
465 543 4.810191 AGAAAAGCTAACGTCTGAGGAT 57.190 40.909 4.12 0.00 0.00 3.24
470 1800 3.983741 AGCTAACGTCTGAGGATAATGC 58.016 45.455 4.12 0.00 0.00 3.56
478 1808 0.809636 TGAGGATAATGCCACACGCG 60.810 55.000 3.53 3.53 42.08 6.01
479 1809 1.498865 GAGGATAATGCCACACGCGG 61.499 60.000 12.47 1.27 42.08 6.46
504 1836 1.134946 GCACAACAGAGGCACAAAAGT 59.865 47.619 0.00 0.00 0.00 2.66
505 1837 2.801063 CACAACAGAGGCACAAAAGTG 58.199 47.619 0.00 0.00 0.00 3.16
567 1900 1.482182 GCTTGGGATTTGGGTGATTCC 59.518 52.381 0.00 0.00 0.00 3.01
568 1901 2.818921 CTTGGGATTTGGGTGATTCCA 58.181 47.619 0.00 0.00 38.11 3.53
569 1902 2.530460 TGGGATTTGGGTGATTCCAG 57.470 50.000 0.00 0.00 38.17 3.86
570 1903 1.715931 TGGGATTTGGGTGATTCCAGT 59.284 47.619 0.00 0.00 38.17 4.00
571 1904 2.291540 TGGGATTTGGGTGATTCCAGTC 60.292 50.000 0.00 0.00 38.17 3.51
572 1905 2.024941 GGGATTTGGGTGATTCCAGTCT 60.025 50.000 0.00 0.00 38.17 3.24
573 1906 3.202151 GGGATTTGGGTGATTCCAGTCTA 59.798 47.826 0.00 0.00 38.17 2.59
574 1907 4.200092 GGATTTGGGTGATTCCAGTCTAC 58.800 47.826 0.00 0.00 38.17 2.59
575 1908 4.324254 GGATTTGGGTGATTCCAGTCTACA 60.324 45.833 0.00 0.00 38.17 2.74
576 1909 3.981071 TTGGGTGATTCCAGTCTACAG 57.019 47.619 0.00 0.00 38.17 2.74
577 1910 3.184382 TGGGTGATTCCAGTCTACAGA 57.816 47.619 0.00 0.00 38.11 3.41
578 1911 3.724478 TGGGTGATTCCAGTCTACAGAT 58.276 45.455 0.00 0.00 38.11 2.90
579 1912 4.878968 TGGGTGATTCCAGTCTACAGATA 58.121 43.478 0.00 0.00 38.11 1.98
580 1913 4.895889 TGGGTGATTCCAGTCTACAGATAG 59.104 45.833 0.00 0.00 38.11 2.08
581 1914 5.141182 GGGTGATTCCAGTCTACAGATAGA 58.859 45.833 0.00 0.00 38.11 1.98
582 1915 5.242838 GGGTGATTCCAGTCTACAGATAGAG 59.757 48.000 0.00 0.00 36.64 2.43
583 1916 6.065374 GGTGATTCCAGTCTACAGATAGAGA 58.935 44.000 0.00 0.00 35.70 3.10
584 1917 6.206634 GGTGATTCCAGTCTACAGATAGAGAG 59.793 46.154 0.00 0.00 35.70 3.20
585 1918 6.995686 GTGATTCCAGTCTACAGATAGAGAGA 59.004 42.308 0.00 0.00 38.14 3.10
586 1919 7.173218 GTGATTCCAGTCTACAGATAGAGAGAG 59.827 44.444 0.00 0.00 38.14 3.20
600 1933 4.280436 AGAGAGAGACGTTCAAGAGAGA 57.720 45.455 0.00 0.00 0.00 3.10
604 1937 2.747446 AGAGACGTTCAAGAGAGAGAGC 59.253 50.000 0.00 0.00 0.00 4.09
605 1938 1.816224 AGACGTTCAAGAGAGAGAGCC 59.184 52.381 0.00 0.00 0.00 4.70
606 1939 0.892063 ACGTTCAAGAGAGAGAGCCC 59.108 55.000 0.00 0.00 0.00 5.19
607 1940 0.174617 CGTTCAAGAGAGAGAGCCCC 59.825 60.000 0.00 0.00 0.00 5.80
608 1941 1.567357 GTTCAAGAGAGAGAGCCCCT 58.433 55.000 0.00 0.00 0.00 4.79
609 1942 2.741145 GTTCAAGAGAGAGAGCCCCTA 58.259 52.381 0.00 0.00 0.00 3.53
627 2397 1.208293 CTAGCTTCCACCCCAGTTCTC 59.792 57.143 0.00 0.00 0.00 2.87
634 2407 0.247736 CACCCCAGTTCTCTTCCTCG 59.752 60.000 0.00 0.00 0.00 4.63
646 2419 3.052793 TCTCTTCCTCGGTTCCTATCCTT 60.053 47.826 0.00 0.00 0.00 3.36
656 2496 4.385310 CGGTTCCTATCCTTCCCATTTCTT 60.385 45.833 0.00 0.00 0.00 2.52
658 2498 6.634039 CGGTTCCTATCCTTCCCATTTCTTTA 60.634 42.308 0.00 0.00 0.00 1.85
665 2505 5.831103 TCCTTCCCATTTCTTTAGCATCTT 58.169 37.500 0.00 0.00 0.00 2.40
680 2520 1.936547 CATCTTGCTCCCGCTTTCTAC 59.063 52.381 0.00 0.00 36.97 2.59
682 2522 2.453521 TCTTGCTCCCGCTTTCTACTA 58.546 47.619 0.00 0.00 36.97 1.82
683 2523 2.427453 TCTTGCTCCCGCTTTCTACTAG 59.573 50.000 0.00 0.00 36.97 2.57
694 2534 6.259638 CCGCTTTCTACTAGTAGTTCTCAAG 58.740 44.000 25.58 19.82 34.84 3.02
720 2560 1.303317 GAGGTGGCATGTTTCCCGT 60.303 57.895 0.00 0.00 0.00 5.28
744 2584 6.037610 GTCGGATGAGAGATTTTACAGCATTT 59.962 38.462 0.00 0.00 0.00 2.32
745 2585 6.599244 TCGGATGAGAGATTTTACAGCATTTT 59.401 34.615 0.00 0.00 0.00 1.82
746 2586 7.768582 TCGGATGAGAGATTTTACAGCATTTTA 59.231 33.333 0.00 0.00 0.00 1.52
747 2587 8.066595 CGGATGAGAGATTTTACAGCATTTTAG 58.933 37.037 0.00 0.00 0.00 1.85
748 2588 7.859875 GGATGAGAGATTTTACAGCATTTTAGC 59.140 37.037 0.00 0.00 0.00 3.09
749 2589 7.088589 TGAGAGATTTTACAGCATTTTAGCC 57.911 36.000 0.00 0.00 34.23 3.93
752 2592 8.127150 AGAGATTTTACAGCATTTTAGCCTTT 57.873 30.769 0.00 0.00 34.23 3.11
754 2594 8.763049 AGATTTTACAGCATTTTAGCCTTTTC 57.237 30.769 0.00 0.00 34.23 2.29
758 2598 5.635417 ACAGCATTTTAGCCTTTTCTCTC 57.365 39.130 0.00 0.00 34.23 3.20
759 2599 5.320277 ACAGCATTTTAGCCTTTTCTCTCT 58.680 37.500 0.00 0.00 34.23 3.10
760 2600 6.476378 ACAGCATTTTAGCCTTTTCTCTCTA 58.524 36.000 0.00 0.00 34.23 2.43
761 2601 6.372937 ACAGCATTTTAGCCTTTTCTCTCTAC 59.627 38.462 0.00 0.00 34.23 2.59
762 2602 6.372659 CAGCATTTTAGCCTTTTCTCTCTACA 59.627 38.462 0.00 0.00 34.23 2.74
763 2603 6.372937 AGCATTTTAGCCTTTTCTCTCTACAC 59.627 38.462 0.00 0.00 34.23 2.90
764 2604 6.403746 GCATTTTAGCCTTTTCTCTCTACACC 60.404 42.308 0.00 0.00 0.00 4.16
765 2605 5.818678 TTTAGCCTTTTCTCTCTACACCA 57.181 39.130 0.00 0.00 0.00 4.17
766 2606 3.971245 AGCCTTTTCTCTCTACACCAG 57.029 47.619 0.00 0.00 0.00 4.00
767 2607 2.569404 AGCCTTTTCTCTCTACACCAGG 59.431 50.000 0.00 0.00 0.00 4.45
768 2608 2.355209 GCCTTTTCTCTCTACACCAGGG 60.355 54.545 0.00 0.00 0.00 4.45
769 2609 2.355209 CCTTTTCTCTCTACACCAGGGC 60.355 54.545 0.00 0.00 0.00 5.19
770 2610 1.276622 TTTCTCTCTACACCAGGGCC 58.723 55.000 0.00 0.00 0.00 5.80
771 2611 0.617820 TTCTCTCTACACCAGGGCCC 60.618 60.000 16.46 16.46 0.00 5.80
772 2612 1.002274 CTCTCTACACCAGGGCCCT 59.998 63.158 22.28 22.28 0.00 5.19
773 2613 1.001760 TCTCTACACCAGGGCCCTC 59.998 63.158 25.77 0.00 0.00 4.30
774 2614 1.002274 CTCTACACCAGGGCCCTCT 59.998 63.158 25.77 7.09 0.00 3.69
775 2615 1.001760 TCTACACCAGGGCCCTCTC 59.998 63.158 25.77 0.00 0.00 3.20
776 2616 2.040606 TACACCAGGGCCCTCTCC 59.959 66.667 25.77 0.00 0.00 3.71
822 2662 2.672874 TCAACCGAGAAATGATGCTTCG 59.327 45.455 0.00 0.00 0.00 3.79
847 2687 1.145819 GATCTGCTGAGCTGGGGAC 59.854 63.158 11.46 0.00 0.00 4.46
852 2692 1.685421 GCTGAGCTGGGGACTCTCT 60.685 63.158 0.00 0.00 35.12 3.10
866 2706 1.964223 ACTCTCTTGTTCTTCCGCTCA 59.036 47.619 0.00 0.00 0.00 4.26
890 2731 1.362355 GTTGGTTGGCCTTTGGTCG 59.638 57.895 3.32 0.00 35.27 4.79
891 2732 1.076632 TTGGTTGGCCTTTGGTCGT 60.077 52.632 3.32 0.00 35.27 4.34
902 2743 2.604914 CCTTTGGTCGTCAGAATCATCG 59.395 50.000 0.00 0.00 0.00 3.84
923 2764 1.560923 CGGAGTGCTTTGGATCGTAG 58.439 55.000 0.00 0.00 0.00 3.51
968 2813 1.061131 GTTCGACTGAATGCCATGACG 59.939 52.381 0.00 0.00 36.29 4.35
969 2814 0.530288 TCGACTGAATGCCATGACGA 59.470 50.000 0.00 0.00 0.00 4.20
970 2815 1.067213 TCGACTGAATGCCATGACGAA 60.067 47.619 0.00 0.00 0.00 3.85
1028 2873 4.488911 AGGATCAGCGGCCTCCCT 62.489 66.667 0.00 0.00 0.00 4.20
1238 3085 2.031012 CGACACCTTCTGCCTGCA 59.969 61.111 0.00 0.00 0.00 4.41
1239 3086 2.320587 CGACACCTTCTGCCTGCAC 61.321 63.158 0.00 0.00 0.00 4.57
1331 3178 0.592637 TGCAATGTTCAGGCGTTGAG 59.407 50.000 2.63 0.00 37.51 3.02
1476 3323 1.203994 AGCAATTGCCTCATCAAGCAC 59.796 47.619 26.45 0.00 43.38 4.40
1551 3398 2.229784 CACTGCCACAGAATTTTCCTCC 59.770 50.000 0.78 0.00 35.18 4.30
1712 3559 5.181056 TCAACATGCGATCATTGTTAACAGT 59.819 36.000 8.56 2.66 0.00 3.55
1870 3717 9.087424 GTTGCATTTAGTTCTTTTTCTGTCTTT 57.913 29.630 0.00 0.00 0.00 2.52
1908 3755 6.074356 GCATGTTGTTTCTGCGAAGTATTTTT 60.074 34.615 0.00 0.00 0.00 1.94
1918 3765 4.148891 GCGAAGTATTTTTGTCTCAACGG 58.851 43.478 0.00 0.00 0.00 4.44
1950 3797 2.298729 GCTGTATTTGCAGGTTGGGAAA 59.701 45.455 0.00 0.00 37.00 3.13
2115 3962 0.616371 TTGGGTTGTCCGAGGTATGG 59.384 55.000 0.00 0.00 38.76 2.74
2308 4155 6.594788 ATTGCCAGAAGCTTAAGAAAATCA 57.405 33.333 6.67 0.00 44.23 2.57
2313 4160 7.599998 TGCCAGAAGCTTAAGAAAATCAAAATC 59.400 33.333 6.67 0.00 44.23 2.17
2449 4296 0.322098 TTGCCCCGTCGAAATCACAT 60.322 50.000 0.00 0.00 0.00 3.21
2529 4376 6.093219 GCAATGGGAGTATGCATATTCTAGTG 59.907 42.308 23.61 21.25 39.81 2.74
2582 4527 5.533903 CCTTTTAGGATCCTCATGGACATTG 59.466 44.000 20.22 0.00 46.51 2.82
2601 4546 2.524306 TGGGAAGCATTGTCGGATTTT 58.476 42.857 0.00 0.00 0.00 1.82
2602 4547 2.896685 TGGGAAGCATTGTCGGATTTTT 59.103 40.909 0.00 0.00 0.00 1.94
2801 4746 9.646522 ATGTTTATCTTTCTAATACCCTGCATT 57.353 29.630 0.00 0.00 0.00 3.56
2816 4761 4.543692 CCTGCATTTTCAGTTGAAGAGTG 58.456 43.478 0.00 0.00 35.21 3.51
2843 4788 0.991146 TGCTCCAAGCCTCCAATACA 59.009 50.000 0.00 0.00 41.51 2.29
2946 4895 5.167121 CACAAACAACACATTTTCACCAGA 58.833 37.500 0.00 0.00 0.00 3.86
2979 4928 4.430007 AGCAGCATGAAGTAATTGCAATG 58.570 39.130 13.82 0.00 39.69 2.82
3113 5062 3.128589 GTGCCACACAACCCAGTATAATG 59.871 47.826 0.00 0.00 34.08 1.90
3136 5085 2.795329 CCCCAGTTTAATCAGCAGTGT 58.205 47.619 0.00 0.00 0.00 3.55
3148 5097 2.027192 TCAGCAGTGTCATCTAAACCCC 60.027 50.000 0.00 0.00 0.00 4.95
3160 5109 3.970842 TCTAAACCCCTCTCACTCTCTC 58.029 50.000 0.00 0.00 0.00 3.20
3164 5113 2.568979 ACCCCTCTCACTCTCTCTAGT 58.431 52.381 0.00 0.00 0.00 2.57
3167 5116 3.181454 CCCCTCTCACTCTCTCTAGTCTC 60.181 56.522 0.00 0.00 0.00 3.36
3188 5137 7.942341 AGTCTCTACTATTATTCCTCTCCTGTG 59.058 40.741 0.00 0.00 32.84 3.66
3209 5158 1.067915 ACCACACACAGCAACAACAAC 60.068 47.619 0.00 0.00 0.00 3.32
3243 5192 2.703416 CACATAGCAGCAACCTCTCAA 58.297 47.619 0.00 0.00 0.00 3.02
3265 5214 1.123928 CTGGGATCTTAGTTCGGCCT 58.876 55.000 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.648092 AGTTTCTAATTGCCTTCGTTAGCAT 59.352 36.000 0.00 0.00 39.11 3.79
35 36 6.147164 CAGTGAGTTTCTAATTGCCTTCGTTA 59.853 38.462 0.00 0.00 0.00 3.18
39 40 4.457257 AGCAGTGAGTTTCTAATTGCCTTC 59.543 41.667 0.00 0.00 0.00 3.46
48 49 9.204570 GTACAAGAAAATAGCAGTGAGTTTCTA 57.795 33.333 7.45 0.00 37.51 2.10
78 79 2.965831 TCATGCACATCTCCCTACCTAC 59.034 50.000 0.00 0.00 0.00 3.18
129 157 2.793278 AACGCCTTTCCACATCAAAC 57.207 45.000 0.00 0.00 0.00 2.93
142 170 4.640789 TCACACAAACATTAAAACGCCT 57.359 36.364 0.00 0.00 0.00 5.52
146 174 7.148755 GCCTCATGATCACACAAACATTAAAAC 60.149 37.037 0.00 0.00 0.00 2.43
186 243 8.958119 TTCAGTTACAGGGACAATAATGATAC 57.042 34.615 0.00 0.00 0.00 2.24
188 245 8.497745 AGATTCAGTTACAGGGACAATAATGAT 58.502 33.333 0.00 0.00 0.00 2.45
189 246 7.770433 CAGATTCAGTTACAGGGACAATAATGA 59.230 37.037 0.00 0.00 0.00 2.57
190 247 7.012704 CCAGATTCAGTTACAGGGACAATAATG 59.987 40.741 0.00 0.00 0.00 1.90
191 248 7.056635 CCAGATTCAGTTACAGGGACAATAAT 58.943 38.462 0.00 0.00 0.00 1.28
192 249 6.214615 TCCAGATTCAGTTACAGGGACAATAA 59.785 38.462 0.00 0.00 0.00 1.40
193 250 5.724370 TCCAGATTCAGTTACAGGGACAATA 59.276 40.000 0.00 0.00 0.00 1.90
194 251 4.536090 TCCAGATTCAGTTACAGGGACAAT 59.464 41.667 0.00 0.00 0.00 2.71
195 252 3.907474 TCCAGATTCAGTTACAGGGACAA 59.093 43.478 0.00 0.00 0.00 3.18
196 253 3.516586 TCCAGATTCAGTTACAGGGACA 58.483 45.455 0.00 0.00 0.00 4.02
197 254 4.762289 ATCCAGATTCAGTTACAGGGAC 57.238 45.455 0.00 0.00 0.00 4.46
198 255 5.905331 ACATATCCAGATTCAGTTACAGGGA 59.095 40.000 0.00 0.00 0.00 4.20
199 256 5.994054 CACATATCCAGATTCAGTTACAGGG 59.006 44.000 0.00 0.00 0.00 4.45
244 319 4.481463 GAATAATGTCAAACACAACCCCG 58.519 43.478 0.00 0.00 38.97 5.73
245 320 4.617298 CGGAATAATGTCAAACACAACCCC 60.617 45.833 0.00 0.00 38.97 4.95
247 322 4.216687 TCCGGAATAATGTCAAACACAACC 59.783 41.667 0.00 0.00 38.97 3.77
267 342 6.074302 CCAAACGATGAGATTACAGTAATCCG 60.074 42.308 24.21 21.74 44.35 4.18
292 367 6.481644 TGGCAAAATATGGAAAAACAGTCAAC 59.518 34.615 0.00 0.00 0.00 3.18
317 392 2.673523 GTGAGAGGGCAGCCACAT 59.326 61.111 15.19 0.00 0.00 3.21
324 399 1.688772 GAGTATACCGTGAGAGGGCA 58.311 55.000 0.00 0.00 35.02 5.36
325 400 0.592148 CGAGTATACCGTGAGAGGGC 59.408 60.000 0.00 0.00 35.02 5.19
347 422 9.277565 CATGATTTTAAACTGGAGTATGTTTCG 57.722 33.333 0.00 0.00 37.53 3.46
351 426 7.148018 CCAGCATGATTTTAAACTGGAGTATGT 60.148 37.037 12.68 0.00 46.10 2.29
352 427 7.198390 CCAGCATGATTTTAAACTGGAGTATG 58.802 38.462 12.68 2.42 46.10 2.39
353 428 6.183360 GCCAGCATGATTTTAAACTGGAGTAT 60.183 38.462 19.29 0.00 46.10 2.12
354 429 5.125417 GCCAGCATGATTTTAAACTGGAGTA 59.875 40.000 19.29 0.00 46.10 2.59
355 430 4.082026 GCCAGCATGATTTTAAACTGGAGT 60.082 41.667 19.29 0.00 46.10 3.85
356 431 4.159135 AGCCAGCATGATTTTAAACTGGAG 59.841 41.667 19.29 0.00 46.10 3.86
357 432 4.082081 CAGCCAGCATGATTTTAAACTGGA 60.082 41.667 19.29 0.00 46.10 3.86
358 433 4.082081 TCAGCCAGCATGATTTTAAACTGG 60.082 41.667 13.38 13.38 45.98 4.00
359 434 5.063180 TCAGCCAGCATGATTTTAAACTG 57.937 39.130 0.00 0.00 39.69 3.16
392 469 9.537192 CATTTCCATCAATTGCTGTTTGTATAT 57.463 29.630 8.38 0.00 0.00 0.86
395 472 5.638657 GCATTTCCATCAATTGCTGTTTGTA 59.361 36.000 8.38 0.00 38.05 2.41
399 476 3.998341 GTGCATTTCCATCAATTGCTGTT 59.002 39.130 8.38 0.00 40.57 3.16
407 484 1.603236 GCCCGGTGCATTTCCATCAA 61.603 55.000 9.72 0.00 40.77 2.57
433 511 4.989168 CGTTAGCTTTTCTACAACAGAGGT 59.011 41.667 0.00 0.00 33.83 3.85
438 516 5.593968 TCAGACGTTAGCTTTTCTACAACA 58.406 37.500 0.00 0.00 0.00 3.33
439 517 5.118817 CCTCAGACGTTAGCTTTTCTACAAC 59.881 44.000 0.00 0.00 0.00 3.32
441 519 4.521639 TCCTCAGACGTTAGCTTTTCTACA 59.478 41.667 0.00 0.00 0.00 2.74
442 520 5.056894 TCCTCAGACGTTAGCTTTTCTAC 57.943 43.478 0.00 0.00 0.00 2.59
443 521 5.916661 ATCCTCAGACGTTAGCTTTTCTA 57.083 39.130 0.00 0.00 0.00 2.10
444 522 4.810191 ATCCTCAGACGTTAGCTTTTCT 57.190 40.909 0.00 0.00 0.00 2.52
445 523 6.510317 GCATTATCCTCAGACGTTAGCTTTTC 60.510 42.308 0.00 0.00 0.00 2.29
446 524 5.294552 GCATTATCCTCAGACGTTAGCTTTT 59.705 40.000 0.00 0.00 0.00 2.27
447 525 4.811557 GCATTATCCTCAGACGTTAGCTTT 59.188 41.667 0.00 0.00 0.00 3.51
448 526 4.372656 GCATTATCCTCAGACGTTAGCTT 58.627 43.478 0.00 0.00 0.00 3.74
450 528 3.060602 GGCATTATCCTCAGACGTTAGC 58.939 50.000 0.00 0.00 0.00 3.09
451 529 4.051922 GTGGCATTATCCTCAGACGTTAG 58.948 47.826 0.00 0.00 0.00 2.34
452 530 3.449377 TGTGGCATTATCCTCAGACGTTA 59.551 43.478 0.00 0.00 0.00 3.18
453 531 2.236146 TGTGGCATTATCCTCAGACGTT 59.764 45.455 0.00 0.00 0.00 3.99
454 532 1.831106 TGTGGCATTATCCTCAGACGT 59.169 47.619 0.00 0.00 0.00 4.34
455 533 2.205074 GTGTGGCATTATCCTCAGACG 58.795 52.381 0.00 0.00 31.10 4.18
456 534 2.205074 CGTGTGGCATTATCCTCAGAC 58.795 52.381 0.00 0.00 31.10 3.51
457 535 1.473257 GCGTGTGGCATTATCCTCAGA 60.473 52.381 0.00 0.00 42.87 3.27
459 537 0.809636 CGCGTGTGGCATTATCCTCA 60.810 55.000 0.00 0.00 43.84 3.86
460 538 1.498865 CCGCGTGTGGCATTATCCTC 61.499 60.000 4.92 0.00 43.84 3.71
463 541 3.022287 CCCGCGTGTGGCATTATC 58.978 61.111 4.92 0.00 43.84 1.75
484 1814 1.134946 ACTTTTGTGCCTCTGTTGTGC 59.865 47.619 0.00 0.00 0.00 4.57
527 1859 0.946528 TATTATGCTGCGCTTGCTGG 59.053 50.000 22.08 2.94 40.12 4.85
528 1860 1.662309 GCTATTATGCTGCGCTTGCTG 60.662 52.381 22.08 4.49 40.12 4.41
529 1861 0.590195 GCTATTATGCTGCGCTTGCT 59.410 50.000 22.08 12.71 40.12 3.91
530 1862 0.590195 AGCTATTATGCTGCGCTTGC 59.410 50.000 9.73 14.07 42.33 4.01
533 1865 1.233019 CCAAGCTATTATGCTGCGCT 58.767 50.000 9.73 0.00 43.24 5.92
534 1866 0.239347 CCCAAGCTATTATGCTGCGC 59.761 55.000 0.00 0.00 43.24 6.09
535 1867 1.882912 TCCCAAGCTATTATGCTGCG 58.117 50.000 0.00 0.00 43.24 5.18
536 1868 4.553323 CAAATCCCAAGCTATTATGCTGC 58.447 43.478 0.00 0.00 43.24 5.25
538 1870 4.154942 CCCAAATCCCAAGCTATTATGCT 58.845 43.478 0.00 0.00 46.40 3.79
539 1871 3.897505 ACCCAAATCCCAAGCTATTATGC 59.102 43.478 0.00 0.00 0.00 3.14
540 1872 5.139727 TCACCCAAATCCCAAGCTATTATG 58.860 41.667 0.00 0.00 0.00 1.90
541 1873 5.402054 TCACCCAAATCCCAAGCTATTAT 57.598 39.130 0.00 0.00 0.00 1.28
542 1874 4.871871 TCACCCAAATCCCAAGCTATTA 57.128 40.909 0.00 0.00 0.00 0.98
545 1877 3.627237 GGAATCACCCAAATCCCAAGCTA 60.627 47.826 0.00 0.00 0.00 3.32
546 1878 2.460669 GAATCACCCAAATCCCAAGCT 58.539 47.619 0.00 0.00 0.00 3.74
547 1879 1.482182 GGAATCACCCAAATCCCAAGC 59.518 52.381 0.00 0.00 0.00 4.01
548 1880 2.762327 CTGGAATCACCCAAATCCCAAG 59.238 50.000 0.00 0.00 35.47 3.61
549 1881 2.111613 ACTGGAATCACCCAAATCCCAA 59.888 45.455 0.00 0.00 35.47 4.12
550 1882 1.715931 ACTGGAATCACCCAAATCCCA 59.284 47.619 0.00 0.00 35.47 4.37
551 1883 2.024941 AGACTGGAATCACCCAAATCCC 60.025 50.000 0.00 0.00 35.47 3.85
567 1900 5.597806 ACGTCTCTCTCTATCTGTAGACTG 58.402 45.833 0.00 0.00 33.46 3.51
568 1901 5.864418 ACGTCTCTCTCTATCTGTAGACT 57.136 43.478 0.00 0.00 33.46 3.24
569 1902 6.044046 TGAACGTCTCTCTCTATCTGTAGAC 58.956 44.000 0.00 0.00 33.46 2.59
570 1903 6.223351 TGAACGTCTCTCTCTATCTGTAGA 57.777 41.667 0.00 0.00 35.67 2.59
571 1904 6.759356 TCTTGAACGTCTCTCTCTATCTGTAG 59.241 42.308 0.00 0.00 0.00 2.74
572 1905 6.641474 TCTTGAACGTCTCTCTCTATCTGTA 58.359 40.000 0.00 0.00 0.00 2.74
573 1906 5.492895 TCTTGAACGTCTCTCTCTATCTGT 58.507 41.667 0.00 0.00 0.00 3.41
574 1907 5.815222 TCTCTTGAACGTCTCTCTCTATCTG 59.185 44.000 0.00 0.00 0.00 2.90
575 1908 5.984725 TCTCTTGAACGTCTCTCTCTATCT 58.015 41.667 0.00 0.00 0.00 1.98
576 1909 6.046593 TCTCTCTTGAACGTCTCTCTCTATC 58.953 44.000 0.00 0.00 0.00 2.08
577 1910 5.984725 TCTCTCTTGAACGTCTCTCTCTAT 58.015 41.667 0.00 0.00 0.00 1.98
578 1911 5.186215 TCTCTCTCTTGAACGTCTCTCTCTA 59.814 44.000 0.00 0.00 0.00 2.43
579 1912 4.020573 TCTCTCTCTTGAACGTCTCTCTCT 60.021 45.833 0.00 0.00 0.00 3.10
580 1913 4.250464 TCTCTCTCTTGAACGTCTCTCTC 58.750 47.826 0.00 0.00 0.00 3.20
581 1914 4.253685 CTCTCTCTCTTGAACGTCTCTCT 58.746 47.826 0.00 0.00 0.00 3.10
582 1915 3.181510 GCTCTCTCTCTTGAACGTCTCTC 60.182 52.174 0.00 0.00 0.00 3.20
583 1916 2.747446 GCTCTCTCTCTTGAACGTCTCT 59.253 50.000 0.00 0.00 0.00 3.10
584 1917 2.159435 GGCTCTCTCTCTTGAACGTCTC 60.159 54.545 0.00 0.00 0.00 3.36
585 1918 1.816224 GGCTCTCTCTCTTGAACGTCT 59.184 52.381 0.00 0.00 0.00 4.18
586 1919 1.135228 GGGCTCTCTCTCTTGAACGTC 60.135 57.143 0.00 0.00 0.00 4.34
604 1937 2.286121 TGGGGTGGAAGCTAGGGG 60.286 66.667 0.00 0.00 0.00 4.79
605 1938 1.208165 AACTGGGGTGGAAGCTAGGG 61.208 60.000 0.00 0.00 0.00 3.53
606 1939 0.253327 GAACTGGGGTGGAAGCTAGG 59.747 60.000 0.00 0.00 0.00 3.02
607 1940 1.208293 GAGAACTGGGGTGGAAGCTAG 59.792 57.143 0.00 0.00 0.00 3.42
608 1941 1.203313 AGAGAACTGGGGTGGAAGCTA 60.203 52.381 0.00 0.00 0.00 3.32
609 1942 0.474660 AGAGAACTGGGGTGGAAGCT 60.475 55.000 0.00 0.00 0.00 3.74
627 2397 2.365941 GGAAGGATAGGAACCGAGGAAG 59.634 54.545 0.00 0.00 0.00 3.46
634 2407 4.797912 AGAAATGGGAAGGATAGGAACC 57.202 45.455 0.00 0.00 0.00 3.62
646 2419 4.989279 GCAAGATGCTAAAGAAATGGGA 57.011 40.909 0.00 0.00 40.96 4.37
665 2505 2.950309 CTACTAGTAGAAAGCGGGAGCA 59.050 50.000 23.20 0.00 46.86 4.26
682 2522 8.532819 CCACCTCTAATTTACTTGAGAACTACT 58.467 37.037 0.00 0.00 0.00 2.57
683 2523 7.278203 GCCACCTCTAATTTACTTGAGAACTAC 59.722 40.741 0.00 0.00 0.00 2.73
694 2534 5.163550 GGGAAACATGCCACCTCTAATTTAC 60.164 44.000 0.00 0.00 0.00 2.01
700 2540 0.251916 CGGGAAACATGCCACCTCTA 59.748 55.000 0.00 0.00 0.00 2.43
707 2547 2.046700 TCCGACGGGAAACATGCC 60.047 61.111 15.25 0.00 40.15 4.40
720 2560 4.736126 TGCTGTAAAATCTCTCATCCGA 57.264 40.909 0.00 0.00 0.00 4.55
744 2584 4.223032 CCTGGTGTAGAGAGAAAAGGCTAA 59.777 45.833 0.00 0.00 0.00 3.09
745 2585 3.769844 CCTGGTGTAGAGAGAAAAGGCTA 59.230 47.826 0.00 0.00 0.00 3.93
746 2586 2.569404 CCTGGTGTAGAGAGAAAAGGCT 59.431 50.000 0.00 0.00 0.00 4.58
747 2587 2.355209 CCCTGGTGTAGAGAGAAAAGGC 60.355 54.545 0.00 0.00 0.00 4.35
748 2588 2.355209 GCCCTGGTGTAGAGAGAAAAGG 60.355 54.545 0.00 0.00 0.00 3.11
749 2589 2.355209 GGCCCTGGTGTAGAGAGAAAAG 60.355 54.545 0.00 0.00 0.00 2.27
752 2592 0.617820 GGGCCCTGGTGTAGAGAGAA 60.618 60.000 17.04 0.00 0.00 2.87
754 2594 1.002274 AGGGCCCTGGTGTAGAGAG 59.998 63.158 28.05 0.00 0.00 3.20
758 2598 2.066999 GGAGAGGGCCCTGGTGTAG 61.067 68.421 34.59 0.00 0.00 2.74
759 2599 2.040606 GGAGAGGGCCCTGGTGTA 59.959 66.667 34.59 0.00 0.00 2.90
767 2607 2.936032 ACAAGGTGGGAGAGGGCC 60.936 66.667 0.00 0.00 0.00 5.80
768 2608 2.352805 CACAAGGTGGGAGAGGGC 59.647 66.667 0.00 0.00 0.00 5.19
769 2609 2.352805 GCACAAGGTGGGAGAGGG 59.647 66.667 0.00 0.00 33.64 4.30
770 2610 1.002868 CTGCACAAGGTGGGAGAGG 60.003 63.158 0.00 0.00 33.64 3.69
771 2611 0.604780 CACTGCACAAGGTGGGAGAG 60.605 60.000 0.00 0.00 33.64 3.20
772 2612 1.344953 ACACTGCACAAGGTGGGAGA 61.345 55.000 8.49 0.00 37.72 3.71
773 2613 0.466189 AACACTGCACAAGGTGGGAG 60.466 55.000 8.49 0.00 37.72 4.30
774 2614 0.033601 AAACACTGCACAAGGTGGGA 60.034 50.000 8.49 0.00 37.72 4.37
775 2615 0.823460 AAAACACTGCACAAGGTGGG 59.177 50.000 8.49 0.00 37.72 4.61
776 2616 2.094286 TCAAAAACACTGCACAAGGTGG 60.094 45.455 8.49 0.00 37.72 4.61
847 2687 2.732412 TGAGCGGAAGAACAAGAGAG 57.268 50.000 0.00 0.00 0.00 3.20
852 2692 2.288825 ACGAGAATGAGCGGAAGAACAA 60.289 45.455 0.00 0.00 0.00 2.83
866 2706 1.613437 CAAAGGCCAACCAACGAGAAT 59.387 47.619 5.01 0.00 39.06 2.40
890 2731 0.103208 ACTCCGCCGATGATTCTGAC 59.897 55.000 0.00 0.00 0.00 3.51
891 2732 0.103026 CACTCCGCCGATGATTCTGA 59.897 55.000 0.00 0.00 0.00 3.27
902 2743 2.464459 CGATCCAAAGCACTCCGCC 61.464 63.158 0.00 0.00 44.04 6.13
934 2779 2.899838 GAACAGGTGGCGTGCACA 60.900 61.111 18.64 0.00 0.00 4.57
941 2786 0.798776 CATTCAGTCGAACAGGTGGC 59.201 55.000 0.00 0.00 32.81 5.01
968 2813 1.736612 CTCTCTTGCCTGGCTTCTTC 58.263 55.000 21.03 0.00 0.00 2.87
969 2814 0.322366 GCTCTCTTGCCTGGCTTCTT 60.322 55.000 21.03 0.00 0.00 2.52
970 2815 1.299321 GCTCTCTTGCCTGGCTTCT 59.701 57.895 21.03 0.00 0.00 2.85
1000 2845 0.745845 GCTGATCCTGTCGCCAACAT 60.746 55.000 0.00 0.00 37.23 2.71
1001 2846 1.375908 GCTGATCCTGTCGCCAACA 60.376 57.895 0.00 0.00 36.18 3.33
1028 2873 4.056125 CGGTGGAGCAGCTCGTCA 62.056 66.667 16.47 6.80 0.00 4.35
1166 3013 0.443869 CACAAACTGGGCGAATCTCG 59.556 55.000 0.00 0.00 43.89 4.04
1215 3062 1.446966 GCAGAAGGTGTCGAGAGGC 60.447 63.158 0.00 0.00 0.00 4.70
1331 3178 1.750399 AGGTCATGGTCGGCAATGC 60.750 57.895 0.00 0.00 0.00 3.56
1332 3179 0.677731 ACAGGTCATGGTCGGCAATG 60.678 55.000 0.00 0.00 0.00 2.82
1442 3289 4.321156 GGCAATTGCTGACACAAACATAGA 60.321 41.667 28.42 0.00 41.70 1.98
1476 3323 2.045536 GGGCAGCCAGACAAGAGG 60.046 66.667 15.19 0.00 0.00 3.69
1551 3398 3.316029 TGCTCAAGTTCTTCAATGTGGTG 59.684 43.478 0.00 0.00 0.00 4.17
1712 3559 3.897505 TGTCTGTTCTGAGTGAATGGAGA 59.102 43.478 0.00 0.00 36.99 3.71
1870 3717 7.278646 CAGAAACAACATGCTACTGCTATAGAA 59.721 37.037 3.21 0.00 40.48 2.10
1929 3776 1.544724 TCCCAACCTGCAAATACAGC 58.455 50.000 0.00 0.00 36.29 4.40
2115 3962 2.159240 GGTGCGGGGAAATTCTGAAATC 60.159 50.000 0.00 0.00 0.00 2.17
2449 4296 2.162809 GCATCAACATGTGTCATGAGCA 59.837 45.455 15.25 0.00 31.86 4.26
2529 4376 5.468746 TGTTAGACACAGCTAATGTTGAACC 59.531 40.000 17.04 3.41 41.41 3.62
2582 4527 3.592898 AAAAATCCGACAATGCTTCCC 57.407 42.857 0.00 0.00 0.00 3.97
2601 4546 1.422402 AGCTTAACCGGTTCCTCCAAA 59.578 47.619 26.16 10.58 35.57 3.28
2602 4547 1.002773 GAGCTTAACCGGTTCCTCCAA 59.997 52.381 26.16 11.38 35.57 3.53
2603 4548 0.611714 GAGCTTAACCGGTTCCTCCA 59.388 55.000 26.16 2.01 35.57 3.86
2611 4556 2.793288 TTTTAGGGGAGCTTAACCGG 57.207 50.000 0.00 0.00 0.00 5.28
2657 4602 4.412528 GGGTAGAATCTTCATAGGGGTGTT 59.587 45.833 0.00 0.00 0.00 3.32
2801 4746 8.632679 AGCAATAATTTCACTCTTCAACTGAAA 58.367 29.630 0.00 0.00 38.07 2.69
2816 4761 3.701040 TGGAGGCTTGGAGCAATAATTTC 59.299 43.478 2.04 0.00 44.75 2.17
2843 4788 7.095607 TGACTGTTTGTTTTGCGTGTTATTTTT 60.096 29.630 0.00 0.00 0.00 1.94
2946 4895 6.172136 ACTTCATGCTGCTAGATGTCTATT 57.828 37.500 0.00 0.00 0.00 1.73
3113 5062 2.019984 CTGCTGATTAAACTGGGGCTC 58.980 52.381 0.00 0.00 0.00 4.70
3136 5085 4.017037 AGAGAGTGAGAGGGGTTTAGATGA 60.017 45.833 0.00 0.00 0.00 2.92
3148 5097 6.716934 AGTAGAGACTAGAGAGAGTGAGAG 57.283 45.833 0.00 0.00 32.65 3.20
3160 5109 9.667107 CAGGAGAGGAATAATAGTAGAGACTAG 57.333 40.741 0.00 0.00 41.50 2.57
3164 5113 7.940137 GTCACAGGAGAGGAATAATAGTAGAGA 59.060 40.741 0.00 0.00 0.00 3.10
3167 5116 6.778069 TGGTCACAGGAGAGGAATAATAGTAG 59.222 42.308 0.00 0.00 0.00 2.57
3188 5137 0.808125 TGTTGTTGCTGTGTGTGGTC 59.192 50.000 0.00 0.00 0.00 4.02
3209 5158 2.031420 GCTATGTGCCTGTGTGCATATG 60.031 50.000 0.00 0.00 42.18 1.78
3243 5192 1.694696 GCCGAACTAAGATCCCAGGAT 59.305 52.381 0.00 0.00 37.59 3.24
3265 5214 8.406643 TCCCATCTCCTATTCTTATGGTATACA 58.593 37.037 5.01 0.00 36.21 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.