Multiple sequence alignment - TraesCS7D01G302000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G302000 chr7D 100.000 4494 0 0 1 4494 382254410 382258903 0.000000e+00 8299.0
1 TraesCS7D01G302000 chr7D 84.211 228 31 5 1655 1881 438368655 438368878 2.720000e-52 217.0
2 TraesCS7D01G302000 chr7D 88.281 128 13 2 1632 1758 215096309 215096183 7.790000e-33 152.0
3 TraesCS7D01G302000 chr7A 92.002 2013 103 26 2402 4401 430241427 430243394 0.000000e+00 2772.0
4 TraesCS7D01G302000 chr7A 90.412 1043 57 23 1320 2351 430240420 430241430 0.000000e+00 1332.0
5 TraesCS7D01G302000 chr7A 91.868 455 9 4 818 1268 430239976 430240406 1.070000e-170 610.0
6 TraesCS7D01G302000 chr7A 79.245 583 81 18 6 576 430239305 430239859 1.970000e-98 370.0
7 TraesCS7D01G302000 chr7A 83.772 228 32 5 1655 1881 489163240 489163463 1.270000e-50 211.0
8 TraesCS7D01G302000 chr7A 95.413 109 5 0 4386 4494 430271883 430271991 1.660000e-39 174.0
9 TraesCS7D01G302000 chr7A 92.308 65 3 2 2342 2405 360611190 360611253 1.720000e-14 91.6
10 TraesCS7D01G302000 chr7B 93.442 1540 62 12 2402 3925 376432281 376433797 0.000000e+00 2248.0
11 TraesCS7D01G302000 chr7B 90.650 877 41 22 1493 2351 376431427 376432280 0.000000e+00 1127.0
12 TraesCS7D01G302000 chr7B 88.058 762 32 16 684 1431 376430678 376431394 0.000000e+00 848.0
13 TraesCS7D01G302000 chr7B 88.862 413 27 10 4087 4494 376436044 376436442 1.450000e-134 490.0
14 TraesCS7D01G302000 chr7B 80.032 621 84 26 6 617 376430072 376430661 1.490000e-114 424.0
15 TraesCS7D01G302000 chr7B 84.211 228 31 5 1655 1881 455272016 455271793 2.720000e-52 217.0
16 TraesCS7D01G302000 chr7B 95.652 46 2 0 3913 3958 376435279 376435324 1.730000e-09 75.0
17 TraesCS7D01G302000 chr2D 87.747 253 28 3 1629 1881 568801800 568802049 4.400000e-75 292.0
18 TraesCS7D01G302000 chr2D 79.894 189 26 3 1004 1180 568801320 568801508 1.310000e-25 128.0
19 TraesCS7D01G302000 chr2D 82.222 90 14 2 1794 1882 398086987 398086899 4.820000e-10 76.8
20 TraesCS7D01G302000 chr2A 87.352 253 29 2 1629 1881 708059137 708059386 2.050000e-73 287.0
21 TraesCS7D01G302000 chr2A 95.918 49 1 1 627 674 377135607 377135559 1.340000e-10 78.7
22 TraesCS7D01G302000 chr2B 87.805 246 27 2 1629 1874 681409271 681409513 7.360000e-73 285.0
23 TraesCS7D01G302000 chr2B 82.320 181 27 4 1004 1180 681408801 681408980 7.790000e-33 152.0
24 TraesCS7D01G302000 chr2B 91.429 70 2 4 2344 2410 38218223 38218291 4.790000e-15 93.5
25 TraesCS7D01G302000 chr6A 96.552 58 1 1 2349 2405 454654059 454654002 1.330000e-15 95.3
26 TraesCS7D01G302000 chr6A 87.692 65 5 3 613 674 17700407 17700343 6.240000e-09 73.1
27 TraesCS7D01G302000 chr5B 96.552 58 1 1 2349 2405 69548107 69548050 1.330000e-15 95.3
28 TraesCS7D01G302000 chr5D 93.651 63 3 1 2344 2405 273117881 273117943 4.790000e-15 93.5
29 TraesCS7D01G302000 chr3A 95.000 60 2 1 2347 2405 466806948 466807007 4.790000e-15 93.5
30 TraesCS7D01G302000 chr3A 95.918 49 1 1 627 674 620767136 620767184 1.340000e-10 78.7
31 TraesCS7D01G302000 chr3A 92.593 54 3 1 622 674 594510490 594510543 4.820000e-10 76.8
32 TraesCS7D01G302000 chr3B 92.308 65 4 1 2348 2411 525999187 525999123 1.720000e-14 91.6
33 TraesCS7D01G302000 chr1A 88.158 76 7 2 2350 2424 137852083 137852009 6.190000e-14 89.8
34 TraesCS7D01G302000 chr3D 90.769 65 6 0 2341 2405 74197494 74197558 2.230000e-13 87.9
35 TraesCS7D01G302000 chr4D 76.506 166 32 7 1018 1181 46293024 46292864 2.880000e-12 84.2
36 TraesCS7D01G302000 chr4D 90.909 55 3 2 627 679 360102137 360102191 6.240000e-09 73.1
37 TraesCS7D01G302000 chr4B 76.647 167 30 9 1015 1178 67771414 67771574 2.880000e-12 84.2
38 TraesCS7D01G302000 chr4B 95.918 49 1 1 627 674 387795129 387795177 1.340000e-10 78.7
39 TraesCS7D01G302000 chr4B 92.727 55 2 2 627 679 629952328 629952382 1.340000e-10 78.7
40 TraesCS7D01G302000 chr4A 76.506 166 32 7 1015 1178 552698531 552698691 2.880000e-12 84.2
41 TraesCS7D01G302000 chr5A 90.000 60 4 2 622 679 461871459 461871400 4.820000e-10 76.8
42 TraesCS7D01G302000 chr6B 90.909 55 3 2 627 679 601049784 601049838 6.240000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G302000 chr7D 382254410 382258903 4493 False 8299.000000 8299 100.000000 1 4494 1 chr7D.!!$F1 4493
1 TraesCS7D01G302000 chr7A 430239305 430243394 4089 False 1271.000000 2772 88.381750 6 4401 4 chr7A.!!$F4 4395
2 TraesCS7D01G302000 chr7B 376430072 376436442 6370 False 868.666667 2248 89.449333 6 4494 6 chr7B.!!$F1 4488
3 TraesCS7D01G302000 chr2D 568801320 568802049 729 False 210.000000 292 83.820500 1004 1881 2 chr2D.!!$F1 877
4 TraesCS7D01G302000 chr2B 681408801 681409513 712 False 218.500000 285 85.062500 1004 1874 2 chr2B.!!$F2 870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
506 509 0.040692 CATGCTCGATGGCGATTTGG 60.041 55.0 0.00 0.0 46.80 3.28 F
958 979 0.178935 CCCTCCATCTCTCCCTCTCC 60.179 65.0 0.00 0.0 0.00 3.71 F
1209 1245 0.248289 TTCCTACTTGCTACGTGCCC 59.752 55.0 0.00 0.0 42.00 5.36 F
1490 1543 0.313987 CCCGGGTTTGAACTTTGAGC 59.686 55.0 14.18 0.0 0.00 4.26 F
2707 2879 0.319900 CAGGTCAACTCCACAGTCCG 60.320 60.0 0.00 0.0 29.93 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1467 1510 0.538746 AAAGTTCAAACCCGGGCGAT 60.539 50.0 24.08 3.77 0.00 4.58 R
2227 2395 0.584876 CACTTTGGGGAACGAACGTC 59.415 55.0 0.00 0.00 28.11 4.34 R
2723 2895 0.872388 CTGGCGTAAACACTGGAACC 59.128 55.0 0.00 0.00 0.00 3.62 R
3242 3426 0.036765 TCAAAGGCGATGTAGGCGTT 60.037 50.0 0.00 0.00 39.89 4.84 R
3969 5654 0.606401 TGCCGCTTTTTCTCTCCTGG 60.606 55.0 0.00 0.00 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.048597 GACGCATGTGGGTGTCGA 60.049 61.111 11.65 0.00 41.50 4.20
38 39 1.741770 GCATGTGGGTGTCGAGTCC 60.742 63.158 0.00 0.00 0.00 3.85
72 74 3.190738 TTGTGGCCTTCCTCCCGTG 62.191 63.158 3.32 0.00 0.00 4.94
85 87 4.463879 CCGTGCCAGAGCTCCCAG 62.464 72.222 10.93 0.00 40.80 4.45
87 89 2.046507 GTGCCAGAGCTCCCAGTG 60.047 66.667 10.93 1.41 40.80 3.66
120 122 0.536460 ATCTTGTTGGTTTCGGCGGT 60.536 50.000 7.21 0.00 0.00 5.68
133 136 3.497879 GCGGTAGCAATGTGTCCC 58.502 61.111 0.00 0.00 44.35 4.46
165 168 1.836999 TTGGGGTGTCATCGTGGAGG 61.837 60.000 0.00 0.00 0.00 4.30
167 170 1.218316 GGGTGTCATCGTGGAGGTC 59.782 63.158 0.00 0.00 0.00 3.85
171 174 1.000955 GTGTCATCGTGGAGGTCAGTT 59.999 52.381 0.00 0.00 0.00 3.16
172 175 2.230508 GTGTCATCGTGGAGGTCAGTTA 59.769 50.000 0.00 0.00 0.00 2.24
182 185 3.437746 GGTCAGTTACCTTCCGAGC 57.562 57.895 0.00 0.00 45.75 5.03
183 186 0.458025 GGTCAGTTACCTTCCGAGCG 60.458 60.000 0.00 0.00 45.75 5.03
184 187 1.077089 GTCAGTTACCTTCCGAGCGC 61.077 60.000 0.00 0.00 0.00 5.92
185 188 1.080093 CAGTTACCTTCCGAGCGCA 60.080 57.895 11.47 0.00 0.00 6.09
186 189 0.460284 CAGTTACCTTCCGAGCGCAT 60.460 55.000 11.47 0.00 0.00 4.73
187 190 0.460284 AGTTACCTTCCGAGCGCATG 60.460 55.000 11.47 0.00 0.00 4.06
188 191 1.813753 TTACCTTCCGAGCGCATGC 60.814 57.895 11.47 7.91 43.24 4.06
215 218 4.058817 GCGTATATAGGCAAGCTTGACTT 58.941 43.478 38.46 26.30 46.60 3.01
226 229 3.601443 AGCTTGACTTGTAGCTCGAAT 57.399 42.857 0.00 0.00 44.05 3.34
230 233 5.521735 AGCTTGACTTGTAGCTCGAATATTG 59.478 40.000 0.00 0.00 44.05 1.90
233 236 7.624344 GCTTGACTTGTAGCTCGAATATTGTTT 60.624 37.037 0.00 0.00 34.57 2.83
234 237 7.290857 TGACTTGTAGCTCGAATATTGTTTC 57.709 36.000 0.00 0.00 0.00 2.78
245 248 4.553429 CGAATATTGTTTCGCTTTGGTGTC 59.447 41.667 0.00 0.00 41.61 3.67
251 254 0.817634 TTCGCTTTGGTGTCAGGTGG 60.818 55.000 0.00 0.00 0.00 4.61
277 280 5.256806 AGTTTGCCTCCTACCTTTTACAT 57.743 39.130 0.00 0.00 0.00 2.29
292 295 3.311486 TTACATGTGACTGCATCGTCA 57.689 42.857 9.11 4.76 41.33 4.35
298 301 2.480037 TGTGACTGCATCGTCAACATTC 59.520 45.455 10.10 0.00 44.73 2.67
307 310 1.084370 CGTCAACATTCTCGGCCCTC 61.084 60.000 0.00 0.00 0.00 4.30
319 322 1.889573 GGCCCTCGCTGATTGTAGC 60.890 63.158 0.00 0.00 40.29 3.58
322 325 0.531532 CCCTCGCTGATTGTAGCCAG 60.532 60.000 0.00 0.00 40.59 4.85
325 328 0.175760 TCGCTGATTGTAGCCAGGAC 59.824 55.000 0.00 0.00 40.59 3.85
347 350 3.882025 GCTCCTCAAACCAGAGCG 58.118 61.111 0.00 0.00 43.18 5.03
354 357 0.541998 TCAAACCAGAGCGAGAGGGA 60.542 55.000 0.00 0.00 0.00 4.20
376 379 2.829384 GGGCCCTCTGTGGTGACAA 61.829 63.158 17.04 0.00 46.06 3.18
381 384 2.862541 CCCTCTGTGGTGACAATTTGA 58.137 47.619 2.79 0.00 46.06 2.69
383 386 3.828451 CCCTCTGTGGTGACAATTTGATT 59.172 43.478 2.79 0.00 46.06 2.57
384 387 5.009631 CCCTCTGTGGTGACAATTTGATTA 58.990 41.667 2.79 0.00 46.06 1.75
387 390 6.430925 CCTCTGTGGTGACAATTTGATTAAGA 59.569 38.462 2.79 0.00 46.06 2.10
389 392 8.044060 TCTGTGGTGACAATTTGATTAAGATC 57.956 34.615 2.79 0.00 46.06 2.75
418 421 3.613193 CGATGTACGGAGGTTTCTCAACA 60.613 47.826 0.00 0.00 41.69 3.33
422 425 2.835027 ACGGAGGTTTCTCAACAAGAC 58.165 47.619 0.00 0.00 41.69 3.01
425 428 2.484889 GAGGTTTCTCAACAAGACGCT 58.515 47.619 0.00 0.00 39.74 5.07
426 429 2.213499 AGGTTTCTCAACAAGACGCTG 58.787 47.619 0.00 0.00 34.15 5.18
450 453 1.301401 TTCTTCTTCGGTGGCCACG 60.301 57.895 29.08 22.97 0.00 4.94
454 457 3.697747 CTTCGGTGGCCACGGGTA 61.698 66.667 34.99 24.36 33.17 3.69
463 466 0.679960 GGCCACGGGTATTTCTTGCT 60.680 55.000 0.00 0.00 0.00 3.91
464 467 1.407712 GGCCACGGGTATTTCTTGCTA 60.408 52.381 0.00 0.00 0.00 3.49
467 470 2.169769 CCACGGGTATTTCTTGCTAGGA 59.830 50.000 0.00 0.00 0.00 2.94
470 473 4.881850 CACGGGTATTTCTTGCTAGGATTT 59.118 41.667 0.00 0.00 0.00 2.17
500 503 2.586914 TGCTCATGCTCGATGGCG 60.587 61.111 0.00 0.00 40.48 5.69
502 505 1.667191 GCTCATGCTCGATGGCGAT 60.667 57.895 0.00 0.00 46.80 4.58
506 509 0.040692 CATGCTCGATGGCGATTTGG 60.041 55.000 0.00 0.00 46.80 3.28
519 522 2.893637 CGATTTGGTGGAGTCCAGTAG 58.106 52.381 13.61 0.00 38.80 2.57
542 545 4.426416 TGCATATCTTGTGCATTGCTTTC 58.574 39.130 10.49 1.58 46.76 2.62
543 546 4.158949 TGCATATCTTGTGCATTGCTTTCT 59.841 37.500 10.49 0.00 46.76 2.52
545 548 5.579511 GCATATCTTGTGCATTGCTTTCTTT 59.420 36.000 10.49 0.00 42.08 2.52
546 549 6.455113 GCATATCTTGTGCATTGCTTTCTTTG 60.455 38.462 10.49 0.35 42.08 2.77
548 551 4.757594 TCTTGTGCATTGCTTTCTTTGTT 58.242 34.783 10.49 0.00 0.00 2.83
549 552 5.900425 TCTTGTGCATTGCTTTCTTTGTTA 58.100 33.333 10.49 0.00 0.00 2.41
553 556 6.946165 TGTGCATTGCTTTCTTTGTTATTTG 58.054 32.000 10.49 0.00 0.00 2.32
554 557 6.760298 TGTGCATTGCTTTCTTTGTTATTTGA 59.240 30.769 10.49 0.00 0.00 2.69
586 599 7.823149 TTCTTTAATCTACTCCGTACTTTGC 57.177 36.000 0.00 0.00 0.00 3.68
587 600 6.927416 TCTTTAATCTACTCCGTACTTTGCA 58.073 36.000 0.00 0.00 0.00 4.08
588 601 7.380536 TCTTTAATCTACTCCGTACTTTGCAA 58.619 34.615 0.00 0.00 0.00 4.08
589 602 7.544566 TCTTTAATCTACTCCGTACTTTGCAAG 59.455 37.037 0.00 0.00 0.00 4.01
590 603 5.401531 AATCTACTCCGTACTTTGCAAGA 57.598 39.130 0.00 0.00 0.00 3.02
591 604 4.436242 TCTACTCCGTACTTTGCAAGAG 57.564 45.455 9.01 9.01 0.00 2.85
592 605 3.825014 TCTACTCCGTACTTTGCAAGAGT 59.175 43.478 17.59 17.59 38.15 3.24
593 606 2.755650 ACTCCGTACTTTGCAAGAGTG 58.244 47.619 14.03 3.34 33.50 3.51
619 632 6.817765 TTTTCTTCCATCACCTTGTATCAC 57.182 37.500 0.00 0.00 0.00 3.06
620 633 4.123497 TCTTCCATCACCTTGTATCACG 57.877 45.455 0.00 0.00 0.00 4.35
622 635 1.831106 TCCATCACCTTGTATCACGCT 59.169 47.619 0.00 0.00 0.00 5.07
624 637 2.609459 CCATCACCTTGTATCACGCTTC 59.391 50.000 0.00 0.00 0.00 3.86
625 638 3.261580 CATCACCTTGTATCACGCTTCA 58.738 45.455 0.00 0.00 0.00 3.02
626 639 3.610040 TCACCTTGTATCACGCTTCAT 57.390 42.857 0.00 0.00 0.00 2.57
627 640 3.521560 TCACCTTGTATCACGCTTCATC 58.478 45.455 0.00 0.00 0.00 2.92
628 641 2.609459 CACCTTGTATCACGCTTCATCC 59.391 50.000 0.00 0.00 0.00 3.51
629 642 1.860950 CCTTGTATCACGCTTCATCCG 59.139 52.381 0.00 0.00 0.00 4.18
630 643 2.540515 CTTGTATCACGCTTCATCCGT 58.459 47.619 0.00 0.00 39.91 4.69
631 644 2.203800 TGTATCACGCTTCATCCGTC 57.796 50.000 0.00 0.00 36.69 4.79
632 645 1.749063 TGTATCACGCTTCATCCGTCT 59.251 47.619 0.00 0.00 36.69 4.18
633 646 2.223502 TGTATCACGCTTCATCCGTCTC 60.224 50.000 0.00 0.00 36.69 3.36
634 647 0.817654 ATCACGCTTCATCCGTCTCA 59.182 50.000 0.00 0.00 36.69 3.27
635 648 0.601057 TCACGCTTCATCCGTCTCAA 59.399 50.000 0.00 0.00 36.69 3.02
636 649 1.000394 TCACGCTTCATCCGTCTCAAA 60.000 47.619 0.00 0.00 36.69 2.69
637 650 1.798223 CACGCTTCATCCGTCTCAAAA 59.202 47.619 0.00 0.00 36.69 2.44
638 651 2.416547 CACGCTTCATCCGTCTCAAAAT 59.583 45.455 0.00 0.00 36.69 1.82
639 652 3.616821 CACGCTTCATCCGTCTCAAAATA 59.383 43.478 0.00 0.00 36.69 1.40
640 653 4.092821 CACGCTTCATCCGTCTCAAAATAA 59.907 41.667 0.00 0.00 36.69 1.40
641 654 4.330074 ACGCTTCATCCGTCTCAAAATAAG 59.670 41.667 0.00 0.00 32.83 1.73
642 655 4.330074 CGCTTCATCCGTCTCAAAATAAGT 59.670 41.667 0.00 0.00 0.00 2.24
643 656 5.563842 GCTTCATCCGTCTCAAAATAAGTG 58.436 41.667 0.00 0.00 0.00 3.16
644 657 5.351465 GCTTCATCCGTCTCAAAATAAGTGA 59.649 40.000 0.00 0.00 0.00 3.41
645 658 6.673316 GCTTCATCCGTCTCAAAATAAGTGAC 60.673 42.308 0.00 0.00 0.00 3.67
646 659 6.037786 TCATCCGTCTCAAAATAAGTGACT 57.962 37.500 0.00 0.00 0.00 3.41
647 660 6.100004 TCATCCGTCTCAAAATAAGTGACTC 58.900 40.000 0.00 0.00 0.00 3.36
648 661 5.462530 TCCGTCTCAAAATAAGTGACTCA 57.537 39.130 0.00 0.00 0.00 3.41
649 662 5.849510 TCCGTCTCAAAATAAGTGACTCAA 58.150 37.500 0.00 0.00 0.00 3.02
650 663 5.694910 TCCGTCTCAAAATAAGTGACTCAAC 59.305 40.000 0.00 0.00 0.00 3.18
651 664 5.696724 CCGTCTCAAAATAAGTGACTCAACT 59.303 40.000 0.00 0.00 0.00 3.16
652 665 6.202954 CCGTCTCAAAATAAGTGACTCAACTT 59.797 38.462 0.00 0.00 42.89 2.66
653 666 7.254795 CCGTCTCAAAATAAGTGACTCAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
654 667 7.584123 CGTCTCAAAATAAGTGACTCAACTTTG 59.416 37.037 0.00 0.00 40.77 2.77
655 668 8.398665 GTCTCAAAATAAGTGACTCAACTTTGT 58.601 33.333 0.00 0.00 40.77 2.83
656 669 9.607988 TCTCAAAATAAGTGACTCAACTTTGTA 57.392 29.630 0.00 0.00 40.77 2.41
657 670 9.651718 CTCAAAATAAGTGACTCAACTTTGTAC 57.348 33.333 0.00 0.00 40.77 2.90
658 671 9.391006 TCAAAATAAGTGACTCAACTTTGTACT 57.609 29.630 0.00 0.00 40.77 2.73
664 677 8.788325 AAGTGACTCAACTTTGTACTAAGTTT 57.212 30.769 26.14 15.97 43.85 2.66
665 678 9.880157 AAGTGACTCAACTTTGTACTAAGTTTA 57.120 29.630 26.14 19.67 43.85 2.01
666 679 9.530633 AGTGACTCAACTTTGTACTAAGTTTAG 57.469 33.333 27.69 27.69 43.85 1.85
667 680 9.525409 GTGACTCAACTTTGTACTAAGTTTAGA 57.475 33.333 32.20 24.48 43.85 2.10
808 823 2.846693 GGTTTCAAACCGTAAGCATCG 58.153 47.619 2.78 0.00 42.62 3.84
916 937 2.559231 GTCCCGTCTCAAAACTCTCTCT 59.441 50.000 0.00 0.00 0.00 3.10
917 938 2.820787 TCCCGTCTCAAAACTCTCTCTC 59.179 50.000 0.00 0.00 0.00 3.20
918 939 2.823154 CCCGTCTCAAAACTCTCTCTCT 59.177 50.000 0.00 0.00 0.00 3.10
919 940 3.119637 CCCGTCTCAAAACTCTCTCTCTC 60.120 52.174 0.00 0.00 0.00 3.20
920 941 3.756434 CCGTCTCAAAACTCTCTCTCTCT 59.244 47.826 0.00 0.00 0.00 3.10
921 942 4.142687 CCGTCTCAAAACTCTCTCTCTCTC 60.143 50.000 0.00 0.00 0.00 3.20
922 943 4.695455 CGTCTCAAAACTCTCTCTCTCTCT 59.305 45.833 0.00 0.00 0.00 3.10
923 944 5.163854 CGTCTCAAAACTCTCTCTCTCTCTC 60.164 48.000 0.00 0.00 0.00 3.20
924 945 5.123979 GTCTCAAAACTCTCTCTCTCTCTCC 59.876 48.000 0.00 0.00 0.00 3.71
925 946 4.340617 TCAAAACTCTCTCTCTCTCTCCC 58.659 47.826 0.00 0.00 0.00 4.30
926 947 4.044065 TCAAAACTCTCTCTCTCTCTCCCT 59.956 45.833 0.00 0.00 0.00 4.20
927 948 3.933861 AACTCTCTCTCTCTCTCCCTC 57.066 52.381 0.00 0.00 0.00 4.30
928 949 2.127708 ACTCTCTCTCTCTCTCCCTCC 58.872 57.143 0.00 0.00 0.00 4.30
929 950 1.421646 CTCTCTCTCTCTCTCCCTCCC 59.578 61.905 0.00 0.00 0.00 4.30
958 979 0.178935 CCCTCCATCTCTCCCTCTCC 60.179 65.000 0.00 0.00 0.00 3.71
964 985 1.303423 ATCTCTCCCTCTCCCTGGCT 61.303 60.000 0.00 0.00 0.00 4.75
965 986 0.627768 TCTCTCCCTCTCCCTGGCTA 60.628 60.000 0.00 0.00 0.00 3.93
966 987 0.263172 CTCTCCCTCTCCCTGGCTAA 59.737 60.000 0.00 0.00 0.00 3.09
967 988 0.944999 TCTCCCTCTCCCTGGCTAAT 59.055 55.000 0.00 0.00 0.00 1.73
1209 1245 0.248289 TTCCTACTTGCTACGTGCCC 59.752 55.000 0.00 0.00 42.00 5.36
1210 1246 0.613853 TCCTACTTGCTACGTGCCCT 60.614 55.000 0.00 0.00 42.00 5.19
1268 1308 1.436983 CTTCGTTCATTAGCCCGGCC 61.437 60.000 5.55 0.00 0.00 6.13
1269 1309 2.124901 CGTTCATTAGCCCGGCCA 60.125 61.111 5.55 0.00 0.00 5.36
1270 1310 2.180204 CGTTCATTAGCCCGGCCAG 61.180 63.158 5.55 0.00 0.00 4.85
1271 1311 2.124320 TTCATTAGCCCGGCCAGC 60.124 61.111 5.55 4.79 0.00 4.85
1272 1312 3.714487 TTCATTAGCCCGGCCAGCC 62.714 63.158 5.55 0.00 0.00 4.85
1273 1313 4.504596 CATTAGCCCGGCCAGCCA 62.505 66.667 5.55 0.00 35.37 4.75
1274 1314 3.738481 ATTAGCCCGGCCAGCCAA 61.738 61.111 5.55 4.64 35.37 4.52
1275 1315 3.073599 ATTAGCCCGGCCAGCCAAT 62.074 57.895 5.55 6.85 35.37 3.16
1276 1316 2.983725 ATTAGCCCGGCCAGCCAATC 62.984 60.000 5.55 0.00 35.37 2.67
1318 1358 1.264288 GCTCTGTTGGTTCTTGTTCCG 59.736 52.381 0.00 0.00 0.00 4.30
1320 1360 2.943033 CTCTGTTGGTTCTTGTTCCGTT 59.057 45.455 0.00 0.00 0.00 4.44
1321 1361 2.680841 TCTGTTGGTTCTTGTTCCGTTG 59.319 45.455 0.00 0.00 0.00 4.10
1322 1362 2.422127 CTGTTGGTTCTTGTTCCGTTGT 59.578 45.455 0.00 0.00 0.00 3.32
1367 1407 4.363999 TGGCGACCAACTTAATTTTTGTG 58.636 39.130 0.00 0.00 0.00 3.33
1424 1467 4.996788 AGGTTGATTGATTCATTCTGCC 57.003 40.909 9.32 10.22 33.34 4.85
1432 1475 9.652379 TTGATTGATTCATTCTGCCTCTGCAAC 62.652 40.741 9.32 0.00 39.82 4.17
1462 1505 7.770801 AAAAGAAGAAGTGTAAACAATTGGC 57.229 32.000 10.83 0.00 34.01 4.52
1463 1506 5.108385 AGAAGAAGTGTAAACAATTGGCG 57.892 39.130 10.83 0.00 34.01 5.69
1465 1508 4.483476 AGAAGTGTAAACAATTGGCGTC 57.517 40.909 10.83 0.00 34.01 5.19
1466 1509 2.961522 AGTGTAAACAATTGGCGTCG 57.038 45.000 10.83 0.00 0.00 5.12
1467 1510 2.485903 AGTGTAAACAATTGGCGTCGA 58.514 42.857 10.83 0.00 0.00 4.20
1484 1537 1.376812 GATCGCCCGGGTTTGAACT 60.377 57.895 24.63 3.80 0.00 3.01
1490 1543 0.313987 CCCGGGTTTGAACTTTGAGC 59.686 55.000 14.18 0.00 0.00 4.26
1491 1544 0.313987 CCGGGTTTGAACTTTGAGCC 59.686 55.000 0.00 0.00 0.00 4.70
1518 1571 4.806330 ACACTGACGTGATAACCAACTAG 58.194 43.478 0.00 0.00 43.97 2.57
1519 1572 4.280174 ACACTGACGTGATAACCAACTAGT 59.720 41.667 0.00 0.00 43.97 2.57
1520 1573 5.474532 ACACTGACGTGATAACCAACTAGTA 59.525 40.000 0.00 0.00 43.97 1.82
1615 1763 4.970662 AATGTTTGGATGGATTCGTCTG 57.029 40.909 0.00 0.00 0.00 3.51
1825 1976 1.142097 GCTCGTCTTCTACCAGGGC 59.858 63.158 0.00 0.00 0.00 5.19
1888 2039 4.148825 CGCCTGGAGGAGGAACGG 62.149 72.222 0.00 0.00 46.33 4.44
1914 2065 2.433446 CCACCAGCAGCAGAAGGT 59.567 61.111 0.00 0.00 33.91 3.50
1958 2115 1.014564 GTGCCAGCTCAAGGTACGTC 61.015 60.000 0.00 0.00 32.17 4.34
2027 2186 2.283529 ATCTGGTTCGCGTGACCCT 61.284 57.895 24.30 11.55 36.30 4.34
2057 2216 1.374631 GACACGCCACTCTCATGCA 60.375 57.895 0.00 0.00 0.00 3.96
2063 2222 2.093500 ACGCCACTCTCATGCAGAATTA 60.093 45.455 0.00 0.00 0.00 1.40
2069 2228 4.272991 CACTCTCATGCAGAATTAAGGAGC 59.727 45.833 0.00 0.00 0.00 4.70
2097 2260 8.024145 AGAGAAGAGAGTTTGTCTTTCCTTTA 57.976 34.615 0.00 0.00 34.71 1.85
2155 2321 8.296799 TGTGAAAATTGCATAGTTTTTAGCAG 57.703 30.769 0.00 0.00 38.35 4.24
2156 2322 8.140628 TGTGAAAATTGCATAGTTTTTAGCAGA 58.859 29.630 0.00 0.00 38.35 4.26
2357 2525 9.939802 TTCAAAATTCTTAACTAGTACTCCCTC 57.060 33.333 0.00 0.00 0.00 4.30
2358 2526 8.537858 TCAAAATTCTTAACTAGTACTCCCTCC 58.462 37.037 0.00 0.00 0.00 4.30
2359 2527 6.712179 AATTCTTAACTAGTACTCCCTCCG 57.288 41.667 0.00 0.00 0.00 4.63
2360 2528 4.851639 TCTTAACTAGTACTCCCTCCGT 57.148 45.455 0.00 0.00 0.00 4.69
2361 2529 5.957771 TCTTAACTAGTACTCCCTCCGTA 57.042 43.478 0.00 0.00 0.00 4.02
2362 2530 6.313519 TCTTAACTAGTACTCCCTCCGTAA 57.686 41.667 0.00 0.00 0.00 3.18
2363 2531 6.721318 TCTTAACTAGTACTCCCTCCGTAAA 58.279 40.000 0.00 0.00 0.00 2.01
2364 2532 6.825721 TCTTAACTAGTACTCCCTCCGTAAAG 59.174 42.308 0.00 0.00 0.00 1.85
2365 2533 4.851639 ACTAGTACTCCCTCCGTAAAGA 57.148 45.455 0.00 0.00 0.00 2.52
2366 2534 5.184892 ACTAGTACTCCCTCCGTAAAGAA 57.815 43.478 0.00 0.00 0.00 2.52
2367 2535 5.574188 ACTAGTACTCCCTCCGTAAAGAAA 58.426 41.667 0.00 0.00 0.00 2.52
2368 2536 6.193504 ACTAGTACTCCCTCCGTAAAGAAAT 58.806 40.000 0.00 0.00 0.00 2.17
2369 2537 7.349598 ACTAGTACTCCCTCCGTAAAGAAATA 58.650 38.462 0.00 0.00 0.00 1.40
2370 2538 8.003629 ACTAGTACTCCCTCCGTAAAGAAATAT 58.996 37.037 0.00 0.00 0.00 1.28
2371 2539 9.512588 CTAGTACTCCCTCCGTAAAGAAATATA 57.487 37.037 0.00 0.00 0.00 0.86
2372 2540 8.773033 AGTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
2373 2541 8.858094 AGTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
2374 2542 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2375 2543 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
2376 2544 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
2377 2545 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
2378 2546 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
2379 2547 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
2380 2548 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
2381 2549 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
2382 2550 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
2383 2551 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
2395 2563 6.754702 AGAGCGTTTAGATCACTACTTACA 57.245 37.500 0.00 0.00 37.82 2.41
2396 2564 7.154435 AGAGCGTTTAGATCACTACTTACAA 57.846 36.000 0.00 0.00 37.82 2.41
2397 2565 7.600065 AGAGCGTTTAGATCACTACTTACAAA 58.400 34.615 0.00 0.00 37.82 2.83
2398 2566 7.755822 AGAGCGTTTAGATCACTACTTACAAAG 59.244 37.037 0.00 0.00 37.82 2.77
2399 2567 6.812160 AGCGTTTAGATCACTACTTACAAAGG 59.188 38.462 0.00 0.00 0.00 3.11
2400 2568 6.035758 GCGTTTAGATCACTACTTACAAAGGG 59.964 42.308 0.00 0.00 0.00 3.95
2434 2602 4.625742 TCGTATAAGAACAGTCAAAGCTGC 59.374 41.667 0.00 0.00 39.96 5.25
2458 2626 6.253512 GCATCTATTACCCGCAAAAGAAAAAG 59.746 38.462 0.00 0.00 0.00 2.27
2484 2652 9.357652 GAAAAACAATCAAAGCTGCATCTATTA 57.642 29.630 1.02 0.00 0.00 0.98
2526 2695 2.028112 TGAGGGCATATGTATTCCTCGC 60.028 50.000 20.64 7.31 45.03 5.03
2565 2734 0.730840 TGTCATCATACGCGTCGTCT 59.269 50.000 18.63 0.00 41.54 4.18
2566 2735 1.935199 TGTCATCATACGCGTCGTCTA 59.065 47.619 18.63 0.00 41.54 2.59
2620 2792 6.223852 TGATCTCTACTGTTTCTGTTGAACC 58.776 40.000 0.00 0.00 31.02 3.62
2707 2879 0.319900 CAGGTCAACTCCACAGTCCG 60.320 60.000 0.00 0.00 29.93 4.79
2723 2895 3.124128 CAGTCCGTGTCACTGAAATGATG 59.876 47.826 0.65 0.00 43.54 3.07
2739 2911 2.147958 TGATGGTTCCAGTGTTTACGC 58.852 47.619 0.00 0.00 0.00 4.42
2752 2924 0.752009 TTTACGCCAGGCAACCAACA 60.752 50.000 13.30 0.00 37.17 3.33
2842 3014 4.065789 GCTAGTTCTTTACTGCAAGGTGT 58.934 43.478 0.00 0.00 39.30 4.16
2845 3017 4.523083 AGTTCTTTACTGCAAGGTGTCAA 58.477 39.130 0.00 0.00 39.30 3.18
2950 3122 0.531532 CTGCGGAGATTGGCTACTGG 60.532 60.000 0.00 0.00 0.00 4.00
2978 3150 5.355350 AGTTTAATCAATGGAAGCCTTCTCG 59.645 40.000 4.15 0.00 0.00 4.04
2999 3178 4.897076 TCGGCCTAACCTACTTCATATGAA 59.103 41.667 17.07 17.07 35.61 2.57
3070 3249 6.668541 ACATACATACATGAACTTGCACTC 57.331 37.500 0.00 0.00 0.00 3.51
3086 3265 2.362077 GCACTCACCATTTGAACCTTGT 59.638 45.455 0.00 0.00 32.21 3.16
3094 3273 4.524328 ACCATTTGAACCTTGTCATCCTTC 59.476 41.667 0.00 0.00 0.00 3.46
3098 3277 6.391227 TTTGAACCTTGTCATCCTTCTTTC 57.609 37.500 0.00 0.00 0.00 2.62
3099 3278 5.310409 TGAACCTTGTCATCCTTCTTTCT 57.690 39.130 0.00 0.00 0.00 2.52
3100 3279 5.694995 TGAACCTTGTCATCCTTCTTTCTT 58.305 37.500 0.00 0.00 0.00 2.52
3101 3280 6.129179 TGAACCTTGTCATCCTTCTTTCTTT 58.871 36.000 0.00 0.00 0.00 2.52
3102 3281 6.607198 TGAACCTTGTCATCCTTCTTTCTTTT 59.393 34.615 0.00 0.00 0.00 2.27
3103 3282 6.396829 ACCTTGTCATCCTTCTTTCTTTTG 57.603 37.500 0.00 0.00 0.00 2.44
3178 3359 1.616921 CCCAAGGCCACCATCTGAT 59.383 57.895 5.01 0.00 0.00 2.90
3259 3443 0.036765 TCAACGCCTACATCGCCTTT 60.037 50.000 0.00 0.00 0.00 3.11
3475 3659 0.468226 AGGAGAACGGCTTGTCACAA 59.532 50.000 0.00 0.00 0.00 3.33
3494 3678 1.673767 AATGTGGACACCCCTCTGAT 58.326 50.000 0.00 0.00 35.38 2.90
3495 3679 1.207791 ATGTGGACACCCCTCTGATC 58.792 55.000 0.00 0.00 35.38 2.92
3780 3970 7.630082 TGTAACCTCCAGCTGAAAGTAAATAT 58.370 34.615 17.39 0.00 35.30 1.28
3781 3971 7.552687 TGTAACCTCCAGCTGAAAGTAAATATG 59.447 37.037 17.39 0.55 35.30 1.78
3782 3972 6.067217 ACCTCCAGCTGAAAGTAAATATGT 57.933 37.500 17.39 1.15 35.30 2.29
3783 3973 5.882557 ACCTCCAGCTGAAAGTAAATATGTG 59.117 40.000 17.39 0.00 35.30 3.21
3785 3975 6.061022 TCCAGCTGAAAGTAAATATGTGGA 57.939 37.500 17.39 0.00 35.30 4.02
3786 3976 6.662755 TCCAGCTGAAAGTAAATATGTGGAT 58.337 36.000 17.39 0.00 35.30 3.41
3787 3977 7.801104 TCCAGCTGAAAGTAAATATGTGGATA 58.199 34.615 17.39 0.00 35.30 2.59
3788 3978 8.271458 TCCAGCTGAAAGTAAATATGTGGATAA 58.729 33.333 17.39 0.00 35.30 1.75
3789 3979 8.345565 CCAGCTGAAAGTAAATATGTGGATAAC 58.654 37.037 17.39 0.00 35.30 1.89
3801 3991 2.436542 TGTGGATAACGGATAACCCCTG 59.563 50.000 0.00 0.00 0.00 4.45
3812 4002 4.340617 GGATAACCCCTGTTTGTCATTCA 58.659 43.478 0.00 0.00 35.87 2.57
3879 4069 1.537202 GAATATGAAGCATCCCCACGC 59.463 52.381 0.00 0.00 0.00 5.34
3969 5654 1.810151 TGACTGGCAATTAAACGCTCC 59.190 47.619 0.00 0.00 0.00 4.70
3979 5664 1.933021 TAAACGCTCCCAGGAGAGAA 58.067 50.000 22.31 6.20 43.22 2.87
3980 5665 1.056660 AAACGCTCCCAGGAGAGAAA 58.943 50.000 22.31 0.00 43.22 2.52
4026 5711 4.215399 GCTTGGCTGTTCAACTACAACATA 59.785 41.667 0.00 0.00 33.30 2.29
4028 5713 4.709250 TGGCTGTTCAACTACAACATACA 58.291 39.130 0.00 0.00 33.30 2.29
4029 5714 4.754618 TGGCTGTTCAACTACAACATACAG 59.245 41.667 0.00 0.00 33.30 2.74
4030 5715 4.755123 GGCTGTTCAACTACAACATACAGT 59.245 41.667 0.00 0.00 35.25 3.55
4031 5716 5.929992 GGCTGTTCAACTACAACATACAGTA 59.070 40.000 0.00 0.00 35.25 2.74
4032 5717 6.128634 GGCTGTTCAACTACAACATACAGTAC 60.129 42.308 0.00 0.00 35.25 2.73
4107 6424 8.331742 GGCTCTTGAGAAAAAGAAATACGATAG 58.668 37.037 1.30 0.00 35.79 2.08
4174 6495 5.938125 ACTTTTATAGACATTTGCTGGTCGT 59.062 36.000 0.00 0.00 39.01 4.34
4190 6511 3.256383 TGGTCGTATTTCGGAAACTCAGA 59.744 43.478 5.12 1.03 40.32 3.27
4229 6550 2.938756 GCATTCCAGAACTCAGGTCAGG 60.939 54.545 0.00 0.00 0.00 3.86
4277 6598 1.748122 CACTCCATGCACTGCTCCC 60.748 63.158 1.98 0.00 0.00 4.30
4283 6604 0.467474 CATGCACTGCTCCCCATGAT 60.467 55.000 1.98 0.00 37.78 2.45
4289 6610 2.437281 CACTGCTCCCCATGATAAGTCT 59.563 50.000 0.00 0.00 0.00 3.24
4296 6617 3.969976 TCCCCATGATAAGTCTCAAGAGG 59.030 47.826 0.00 0.00 0.00 3.69
4306 6627 2.771943 AGTCTCAAGAGGACACCACAAA 59.228 45.455 0.00 0.00 36.29 2.83
4315 6636 2.505819 AGGACACCACAAACTTCAGAGT 59.494 45.455 0.00 0.00 37.87 3.24
4329 6650 8.491152 CAAACTTCAGAGTCACTATACAGTTTG 58.509 37.037 15.95 15.95 34.21 2.93
4348 6669 3.819564 TGATCTACCGTTTCCATGGAG 57.180 47.619 15.53 5.82 32.58 3.86
4431 6752 5.293324 TGTGCCATTTACTATGTTCGACATC 59.707 40.000 4.15 0.00 39.88 3.06
4444 6765 3.893326 TCGACATCTGATCAATGGTGT 57.107 42.857 16.89 10.52 0.00 4.16
4445 6766 3.785486 TCGACATCTGATCAATGGTGTC 58.215 45.455 15.19 15.19 34.25 3.67
4446 6767 2.868583 CGACATCTGATCAATGGTGTCC 59.131 50.000 17.97 5.67 34.11 4.02
4447 6768 3.209410 GACATCTGATCAATGGTGTCCC 58.791 50.000 14.53 0.00 32.08 4.46
4472 6793 0.108851 CAATTTTACCCCAGCGCCAC 60.109 55.000 2.29 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.422303 CACCCACATGCGTCACCG 61.422 66.667 0.00 0.00 37.07 4.94
22 23 3.388841 GGGACTCGACACCCACAT 58.611 61.111 14.98 0.00 44.96 3.21
54 55 2.852075 ACGGGAGGAAGGCCACAA 60.852 61.111 5.01 0.00 36.29 3.33
62 64 3.706373 GCTCTGGCACGGGAGGAA 61.706 66.667 0.00 0.00 38.54 3.36
63 65 4.704103 AGCTCTGGCACGGGAGGA 62.704 66.667 0.00 0.00 41.70 3.71
65 67 4.154347 GGAGCTCTGGCACGGGAG 62.154 72.222 14.64 0.00 41.70 4.30
72 74 2.129555 TTTCCACTGGGAGCTCTGGC 62.130 60.000 14.64 0.00 46.01 4.85
84 86 2.065799 AGATGGACTTGGGTTTCCACT 58.934 47.619 0.00 0.00 44.80 4.00
85 87 2.586648 AGATGGACTTGGGTTTCCAC 57.413 50.000 0.00 0.00 44.80 4.02
131 134 1.549203 CCCAAGAGGTTGACAATGGG 58.451 55.000 8.98 8.98 41.38 4.00
132 135 1.203050 ACCCCAAGAGGTTGACAATGG 60.203 52.381 0.00 0.00 36.44 3.16
133 136 1.888512 CACCCCAAGAGGTTGACAATG 59.111 52.381 0.00 0.00 38.39 2.82
154 157 1.822990 GGTAACTGACCTCCACGATGA 59.177 52.381 0.00 0.00 45.89 2.92
171 174 2.202878 GCATGCGCTCGGAAGGTA 60.203 61.111 9.73 0.00 34.30 3.08
174 177 3.918220 GACGCATGCGCTCGGAAG 61.918 66.667 38.15 11.72 44.19 3.46
183 186 1.920574 CCTATATACGCTGACGCATGC 59.079 52.381 7.91 7.91 45.53 4.06
184 187 1.920574 GCCTATATACGCTGACGCATG 59.079 52.381 0.00 0.00 45.53 4.06
185 188 1.544246 TGCCTATATACGCTGACGCAT 59.456 47.619 5.49 0.00 45.53 4.73
186 189 0.955905 TGCCTATATACGCTGACGCA 59.044 50.000 5.49 0.00 45.53 5.24
187 190 1.986378 CTTGCCTATATACGCTGACGC 59.014 52.381 5.49 0.00 45.53 5.19
189 192 3.305398 AGCTTGCCTATATACGCTGAC 57.695 47.619 5.49 0.00 0.00 3.51
190 193 3.320826 TCAAGCTTGCCTATATACGCTGA 59.679 43.478 21.99 0.00 0.00 4.26
191 194 3.430218 GTCAAGCTTGCCTATATACGCTG 59.570 47.826 21.99 0.00 0.00 5.18
192 195 3.322254 AGTCAAGCTTGCCTATATACGCT 59.678 43.478 21.99 3.91 0.00 5.07
193 196 3.654414 AGTCAAGCTTGCCTATATACGC 58.346 45.455 21.99 0.00 0.00 4.42
194 197 5.582439 CAAGTCAAGCTTGCCTATATACG 57.418 43.478 21.99 0.00 46.68 3.06
226 229 3.252215 CCTGACACCAAAGCGAAACAATA 59.748 43.478 0.00 0.00 0.00 1.90
230 233 1.021968 ACCTGACACCAAAGCGAAAC 58.978 50.000 0.00 0.00 0.00 2.78
233 236 1.227823 CCACCTGACACCAAAGCGA 60.228 57.895 0.00 0.00 0.00 4.93
234 237 1.101049 AACCACCTGACACCAAAGCG 61.101 55.000 0.00 0.00 0.00 4.68
245 248 1.886542 GGAGGCAAACTAAACCACCTG 59.113 52.381 0.00 0.00 32.05 4.00
251 254 6.487668 TGTAAAAGGTAGGAGGCAAACTAAAC 59.512 38.462 0.00 0.00 0.00 2.01
292 295 2.125106 GCGAGGGCCGAGAATGTT 60.125 61.111 0.00 0.00 41.76 2.71
298 301 2.016393 TACAATCAGCGAGGGCCGAG 62.016 60.000 0.00 0.00 41.76 4.63
307 310 0.811616 GGTCCTGGCTACAATCAGCG 60.812 60.000 0.00 0.00 42.76 5.18
325 328 2.032528 TGGTTTGAGGAGCGCTGG 59.967 61.111 18.48 0.00 0.00 4.85
367 370 6.742718 CACGATCTTAATCAAATTGTCACCAC 59.257 38.462 0.00 0.00 31.76 4.16
371 374 6.493449 TGCACGATCTTAATCAAATTGTCA 57.507 33.333 0.00 0.00 31.76 3.58
376 379 5.794687 TCGTTGCACGATCTTAATCAAAT 57.205 34.783 7.20 0.00 46.73 2.32
389 392 1.410737 CCTCCGTACATCGTTGCACG 61.411 60.000 11.44 11.44 41.35 5.34
402 405 2.802057 CGTCTTGTTGAGAAACCTCCGT 60.802 50.000 0.00 0.00 35.79 4.69
408 411 4.458708 GAATCAGCGTCTTGTTGAGAAAC 58.541 43.478 0.00 0.00 41.39 2.78
414 417 2.476619 AGAACGAATCAGCGTCTTGTTG 59.523 45.455 0.00 0.00 44.86 3.33
418 421 3.305398 AGAAGAACGAATCAGCGTCTT 57.695 42.857 0.00 0.00 44.86 3.01
422 425 1.321743 CCGAAGAAGAACGAATCAGCG 59.678 52.381 0.00 0.00 37.29 5.18
425 428 2.683968 CCACCGAAGAAGAACGAATCA 58.316 47.619 0.00 0.00 0.00 2.57
426 429 1.393883 GCCACCGAAGAAGAACGAATC 59.606 52.381 0.00 0.00 0.00 2.52
450 453 4.038042 GCCAAATCCTAGCAAGAAATACCC 59.962 45.833 0.00 0.00 0.00 3.69
454 457 7.065504 AGATTAGCCAAATCCTAGCAAGAAAT 58.934 34.615 5.91 0.00 44.44 2.17
463 466 5.509498 AGCACAAAGATTAGCCAAATCCTA 58.491 37.500 5.91 0.00 44.44 2.94
464 467 4.347607 AGCACAAAGATTAGCCAAATCCT 58.652 39.130 5.91 0.00 44.44 3.24
467 470 5.657474 CATGAGCACAAAGATTAGCCAAAT 58.343 37.500 0.00 0.00 0.00 2.32
470 473 2.424601 GCATGAGCACAAAGATTAGCCA 59.575 45.455 0.00 0.00 41.58 4.75
500 503 3.600388 CACTACTGGACTCCACCAAATC 58.400 50.000 0.00 0.00 39.59 2.17
502 505 1.071699 GCACTACTGGACTCCACCAAA 59.928 52.381 0.00 0.00 39.59 3.28
506 509 3.639094 AGATATGCACTACTGGACTCCAC 59.361 47.826 0.00 0.00 0.00 4.02
576 589 3.963383 AAACACTCTTGCAAAGTACGG 57.037 42.857 0.00 0.00 46.34 4.02
600 613 2.609459 GCGTGATACAAGGTGATGGAAG 59.391 50.000 0.00 0.00 0.00 3.46
602 615 1.831106 AGCGTGATACAAGGTGATGGA 59.169 47.619 0.00 0.00 0.00 3.41
603 616 2.315925 AGCGTGATACAAGGTGATGG 57.684 50.000 0.00 0.00 0.00 3.51
617 630 1.428448 TTTGAGACGGATGAAGCGTG 58.572 50.000 0.00 0.00 0.00 5.34
618 631 2.163818 TTTTGAGACGGATGAAGCGT 57.836 45.000 0.00 0.00 0.00 5.07
619 632 4.330074 ACTTATTTTGAGACGGATGAAGCG 59.670 41.667 0.00 0.00 0.00 4.68
620 633 5.351465 TCACTTATTTTGAGACGGATGAAGC 59.649 40.000 0.00 0.00 0.00 3.86
622 635 6.464222 AGTCACTTATTTTGAGACGGATGAA 58.536 36.000 0.00 0.00 34.56 2.57
624 637 5.869344 TGAGTCACTTATTTTGAGACGGATG 59.131 40.000 0.00 0.00 34.56 3.51
625 638 6.037786 TGAGTCACTTATTTTGAGACGGAT 57.962 37.500 0.00 0.00 34.56 4.18
626 639 5.462530 TGAGTCACTTATTTTGAGACGGA 57.537 39.130 0.00 0.00 34.56 4.69
627 640 5.696724 AGTTGAGTCACTTATTTTGAGACGG 59.303 40.000 0.00 0.00 34.56 4.79
628 641 6.771188 AGTTGAGTCACTTATTTTGAGACG 57.229 37.500 0.00 0.00 34.56 4.18
629 642 8.398665 ACAAAGTTGAGTCACTTATTTTGAGAC 58.601 33.333 14.62 0.00 35.87 3.36
630 643 8.506168 ACAAAGTTGAGTCACTTATTTTGAGA 57.494 30.769 14.62 0.00 35.87 3.27
631 644 9.651718 GTACAAAGTTGAGTCACTTATTTTGAG 57.348 33.333 14.62 0.00 35.87 3.02
632 645 9.391006 AGTACAAAGTTGAGTCACTTATTTTGA 57.609 29.630 14.62 1.37 35.87 2.69
638 651 9.880157 AAACTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 2.97 0.00 46.40 2.24
639 652 8.788325 AAACTTAGTACAAAGTTGAGTCACTT 57.212 30.769 2.97 0.00 46.40 3.16
640 653 9.530633 CTAAACTTAGTACAAAGTTGAGTCACT 57.469 33.333 2.97 0.00 46.40 3.41
641 654 9.525409 TCTAAACTTAGTACAAAGTTGAGTCAC 57.475 33.333 11.72 0.00 46.40 3.67
660 673 8.957466 GCCAGATGGTAATACTTTTTCTAAACT 58.043 33.333 0.00 0.00 37.57 2.66
661 674 8.736244 TGCCAGATGGTAATACTTTTTCTAAAC 58.264 33.333 0.00 0.00 37.57 2.01
662 675 8.871629 TGCCAGATGGTAATACTTTTTCTAAA 57.128 30.769 0.00 0.00 37.57 1.85
663 676 9.474313 AATGCCAGATGGTAATACTTTTTCTAA 57.526 29.630 0.00 0.00 37.57 2.10
665 678 7.961326 AATGCCAGATGGTAATACTTTTTCT 57.039 32.000 0.00 0.00 37.57 2.52
729 742 7.253421 TCCTCCTATCCAGTATATAAAAGGCA 58.747 38.462 0.00 0.00 0.00 4.75
769 784 5.382618 AACCGTAAGTCTTCAACGACTAT 57.617 39.130 9.06 0.00 43.14 2.12
770 785 4.836125 AACCGTAAGTCTTCAACGACTA 57.164 40.909 9.06 0.00 43.14 2.59
808 823 7.210873 ACCTGCTACTACTATACTTTTGCATC 58.789 38.462 0.00 0.00 0.00 3.91
845 863 2.349297 AGTGCACGCTAGTCAACTAC 57.651 50.000 12.01 0.00 0.00 2.73
916 937 0.996762 GAGGGAGGGAGGGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
917 938 1.541672 GAGGGAGGGAGGGAGAGAG 59.458 68.421 0.00 0.00 0.00 3.20
918 939 2.015726 GGAGGGAGGGAGGGAGAGA 61.016 68.421 0.00 0.00 0.00 3.10
919 940 2.612251 GGAGGGAGGGAGGGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
920 941 3.036959 GGGAGGGAGGGAGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
921 942 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
922 943 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
923 944 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
924 945 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
925 946 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
926 947 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
927 948 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
928 949 2.687909 GATGGAGGGAGGGAGGGAGG 62.688 70.000 0.00 0.00 0.00 4.30
929 950 1.152139 GATGGAGGGAGGGAGGGAG 60.152 68.421 0.00 0.00 0.00 4.30
958 979 4.130118 CACTGCTACCTTAATTAGCCAGG 58.870 47.826 11.75 0.85 41.20 4.45
964 985 5.840243 TCGCTACACTGCTACCTTAATTA 57.160 39.130 0.00 0.00 0.00 1.40
965 986 4.730949 TCGCTACACTGCTACCTTAATT 57.269 40.909 0.00 0.00 0.00 1.40
966 987 4.262079 GGATCGCTACACTGCTACCTTAAT 60.262 45.833 0.00 0.00 0.00 1.40
967 988 3.067742 GGATCGCTACACTGCTACCTTAA 59.932 47.826 0.00 0.00 0.00 1.85
1047 1068 2.843411 TCGTCCCGTGGGTGGAAA 60.843 61.111 4.53 0.00 36.47 3.13
1291 1331 2.175202 AGAACCAACAGAGCTCGATCT 58.825 47.619 8.37 0.25 0.00 2.75
1318 1358 1.268488 TGAACTGCATGCACGAACAAC 60.268 47.619 18.46 4.95 0.00 3.32
1320 1360 1.237533 ATGAACTGCATGCACGAACA 58.762 45.000 18.46 14.52 35.42 3.18
1389 1432 5.896678 TCAATCAACCTTCCTTTCCTTGAAA 59.103 36.000 0.00 0.00 0.00 2.69
1462 1505 4.807039 AAACCCGGGCGATCGACG 62.807 66.667 24.08 21.17 45.66 5.12
1463 1506 3.192922 CAAACCCGGGCGATCGAC 61.193 66.667 24.08 18.00 0.00 4.20
1465 1508 2.435234 TTCAAACCCGGGCGATCG 60.435 61.111 24.08 11.69 0.00 3.69
1466 1509 0.958876 AAGTTCAAACCCGGGCGATC 60.959 55.000 24.08 13.86 0.00 3.69
1467 1510 0.538746 AAAGTTCAAACCCGGGCGAT 60.539 50.000 24.08 3.77 0.00 4.58
1484 1537 2.159014 ACGTCAGTGTAACAGGCTCAAA 60.159 45.455 0.00 0.00 41.43 2.69
1520 1573 7.705325 GCAGAAAATATGATTTCAGCAAGATGT 59.295 33.333 13.73 0.00 45.61 3.06
1562 1700 4.640771 ACCAATCTGTCCAACTGTGTAT 57.359 40.909 0.00 0.00 0.00 2.29
1565 1703 2.287788 GCAACCAATCTGTCCAACTGTG 60.288 50.000 0.00 0.00 0.00 3.66
1567 1705 1.955778 TGCAACCAATCTGTCCAACTG 59.044 47.619 0.00 0.00 0.00 3.16
1568 1706 2.363306 TGCAACCAATCTGTCCAACT 57.637 45.000 0.00 0.00 0.00 3.16
1569 1707 2.927871 GCATGCAACCAATCTGTCCAAC 60.928 50.000 14.21 0.00 0.00 3.77
1615 1763 1.943507 GCCTCTGCACAAGGAGAAGAC 60.944 57.143 13.50 0.00 41.98 3.01
2027 2186 1.142314 GCGTGTCCTAATACCGCCA 59.858 57.895 0.00 0.00 38.52 5.69
2057 2216 6.194235 TCTCTTCTCTCTGCTCCTTAATTCT 58.806 40.000 0.00 0.00 0.00 2.40
2063 2222 3.456380 ACTCTCTTCTCTCTGCTCCTT 57.544 47.619 0.00 0.00 0.00 3.36
2069 2228 5.925969 GGAAAGACAAACTCTCTTCTCTCTG 59.074 44.000 0.00 0.00 0.00 3.35
2183 2349 5.163703 GGTAGTGATATCTATCTCAGCCACG 60.164 48.000 3.98 0.00 33.88 4.94
2215 2383 1.201722 CGAACGTCGTTTCGTGTGGA 61.202 55.000 12.67 0.00 42.78 4.02
2227 2395 0.584876 CACTTTGGGGAACGAACGTC 59.415 55.000 0.00 0.00 28.11 4.34
2238 2406 6.018832 CAGAAACTTAAATTGCACACTTTGGG 60.019 38.462 0.00 0.00 0.00 4.12
2239 2407 6.534793 ACAGAAACTTAAATTGCACACTTTGG 59.465 34.615 0.00 0.00 0.00 3.28
2351 2519 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
2352 2520 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
2353 2521 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
2354 2522 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
2355 2523 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
2356 2524 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
2357 2525 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
2369 2537 8.900781 TGTAAGTAGTGATCTAAACGCTCTTAT 58.099 33.333 0.00 0.00 0.00 1.73
2370 2538 8.272545 TGTAAGTAGTGATCTAAACGCTCTTA 57.727 34.615 0.00 0.00 0.00 2.10
2371 2539 7.154435 TGTAAGTAGTGATCTAAACGCTCTT 57.846 36.000 0.00 0.00 0.00 2.85
2372 2540 6.754702 TGTAAGTAGTGATCTAAACGCTCT 57.245 37.500 0.00 0.00 0.00 4.09
2373 2541 7.009357 CCTTTGTAAGTAGTGATCTAAACGCTC 59.991 40.741 0.00 0.00 0.00 5.03
2374 2542 6.812160 CCTTTGTAAGTAGTGATCTAAACGCT 59.188 38.462 0.00 0.00 0.00 5.07
2375 2543 6.035758 CCCTTTGTAAGTAGTGATCTAAACGC 59.964 42.308 0.00 0.00 0.00 4.84
2376 2544 7.318141 TCCCTTTGTAAGTAGTGATCTAAACG 58.682 38.462 0.00 0.00 0.00 3.60
2377 2545 8.312564 ACTCCCTTTGTAAGTAGTGATCTAAAC 58.687 37.037 0.00 0.00 0.00 2.01
2378 2546 8.431910 ACTCCCTTTGTAAGTAGTGATCTAAA 57.568 34.615 0.00 0.00 0.00 1.85
2379 2547 9.537852 TTACTCCCTTTGTAAGTAGTGATCTAA 57.462 33.333 0.00 0.00 0.00 2.10
2380 2548 8.964772 GTTACTCCCTTTGTAAGTAGTGATCTA 58.035 37.037 0.00 0.00 31.54 1.98
2381 2549 7.453752 TGTTACTCCCTTTGTAAGTAGTGATCT 59.546 37.037 0.00 0.00 31.54 2.75
2382 2550 7.609056 TGTTACTCCCTTTGTAAGTAGTGATC 58.391 38.462 0.00 0.00 31.54 2.92
2383 2551 7.549147 TGTTACTCCCTTTGTAAGTAGTGAT 57.451 36.000 0.00 0.00 31.54 3.06
2384 2552 6.982160 TGTTACTCCCTTTGTAAGTAGTGA 57.018 37.500 0.00 0.00 31.54 3.41
2385 2553 9.886132 AATATGTTACTCCCTTTGTAAGTAGTG 57.114 33.333 0.00 0.00 31.54 2.74
2387 2555 9.245962 CGAATATGTTACTCCCTTTGTAAGTAG 57.754 37.037 0.00 0.00 31.54 2.57
2388 2556 8.752187 ACGAATATGTTACTCCCTTTGTAAGTA 58.248 33.333 0.00 0.00 31.54 2.24
2389 2557 7.618137 ACGAATATGTTACTCCCTTTGTAAGT 58.382 34.615 0.00 0.00 31.54 2.24
2390 2558 9.760077 ATACGAATATGTTACTCCCTTTGTAAG 57.240 33.333 0.00 0.00 31.54 2.34
2393 2561 9.760077 CTTATACGAATATGTTACTCCCTTTGT 57.240 33.333 0.00 0.00 0.00 2.83
2394 2562 9.976511 TCTTATACGAATATGTTACTCCCTTTG 57.023 33.333 0.00 0.00 0.00 2.77
2396 2564 9.978044 GTTCTTATACGAATATGTTACTCCCTT 57.022 33.333 0.00 0.00 0.00 3.95
2397 2565 9.139734 TGTTCTTATACGAATATGTTACTCCCT 57.860 33.333 0.00 0.00 0.00 4.20
2398 2566 9.408069 CTGTTCTTATACGAATATGTTACTCCC 57.592 37.037 0.00 0.00 0.00 4.30
2399 2567 9.962783 ACTGTTCTTATACGAATATGTTACTCC 57.037 33.333 0.00 0.00 0.00 3.85
2434 2602 7.535139 TCTTTTTCTTTTGCGGGTAATAGATG 58.465 34.615 0.00 0.00 0.00 2.90
2458 2626 7.823149 ATAGATGCAGCTTTGATTGTTTTTC 57.177 32.000 11.02 0.00 0.00 2.29
2484 2652 6.641314 CCTCATTCTAAATACACGCGTAGATT 59.359 38.462 13.44 11.89 0.00 2.40
2526 2695 7.956420 TGACAGTTATATAAATGGGCTAACG 57.044 36.000 22.83 0.62 35.75 3.18
2575 2747 5.125356 TCATACGAAATTCCAGCATGACAT 58.875 37.500 0.00 0.00 39.69 3.06
2620 2792 3.013219 TCCGAGTCAGAGAAGATCACTG 58.987 50.000 0.00 0.00 36.59 3.66
2707 2879 3.820467 TGGAACCATCATTTCAGTGACAC 59.180 43.478 0.00 0.00 0.00 3.67
2723 2895 0.872388 CTGGCGTAAACACTGGAACC 59.128 55.000 0.00 0.00 0.00 3.62
2739 2911 3.810310 TTTAGTTTGTTGGTTGCCTGG 57.190 42.857 0.00 0.00 0.00 4.45
2950 3122 8.907885 AGAAGGCTTCCATTGATTAAACTAATC 58.092 33.333 23.09 0.35 43.73 1.75
2978 3150 7.719633 TCAATTTCATATGAAGTAGGTTAGGCC 59.280 37.037 17.28 0.00 35.21 5.19
2999 3178 8.641498 AGTATTCATTCCTTGAACTGTCAATT 57.359 30.769 0.00 0.00 46.80 2.32
3052 3231 3.752747 TGGTGAGTGCAAGTTCATGTATG 59.247 43.478 0.00 0.00 0.00 2.39
3053 3232 4.019792 TGGTGAGTGCAAGTTCATGTAT 57.980 40.909 0.00 0.00 0.00 2.29
3054 3233 3.483808 TGGTGAGTGCAAGTTCATGTA 57.516 42.857 0.00 0.00 0.00 2.29
3055 3234 2.346766 TGGTGAGTGCAAGTTCATGT 57.653 45.000 0.00 0.00 0.00 3.21
3056 3235 3.928727 AATGGTGAGTGCAAGTTCATG 57.071 42.857 0.00 0.00 0.00 3.07
3070 3249 3.828451 AGGATGACAAGGTTCAAATGGTG 59.172 43.478 0.00 0.00 0.00 4.17
3094 3273 9.455847 CAGTCTTCCTGTATTTTCAAAAGAAAG 57.544 33.333 0.00 0.00 36.37 2.62
3098 3277 6.265422 ACCCAGTCTTCCTGTATTTTCAAAAG 59.735 38.462 0.00 0.00 39.74 2.27
3099 3278 6.040391 CACCCAGTCTTCCTGTATTTTCAAAA 59.960 38.462 0.00 0.00 39.74 2.44
3100 3279 5.534654 CACCCAGTCTTCCTGTATTTTCAAA 59.465 40.000 0.00 0.00 39.74 2.69
3101 3280 5.070001 CACCCAGTCTTCCTGTATTTTCAA 58.930 41.667 0.00 0.00 39.74 2.69
3102 3281 4.651778 CACCCAGTCTTCCTGTATTTTCA 58.348 43.478 0.00 0.00 39.74 2.69
3103 3282 3.440522 GCACCCAGTCTTCCTGTATTTTC 59.559 47.826 0.00 0.00 39.74 2.29
3178 3359 2.546373 GCTGAAAAATGTGCAGGCTTCA 60.546 45.455 0.00 0.00 0.00 3.02
3242 3426 0.036765 TCAAAGGCGATGTAGGCGTT 60.037 50.000 0.00 0.00 39.89 4.84
3475 3659 1.561542 GATCAGAGGGGTGTCCACATT 59.438 52.381 0.00 0.00 38.24 2.71
3494 3678 8.427902 AGTAGCACAATAATCTCATATCAGGA 57.572 34.615 0.00 0.00 0.00 3.86
3495 3679 9.800433 CTAGTAGCACAATAATCTCATATCAGG 57.200 37.037 0.00 0.00 0.00 3.86
3592 3782 3.012518 AGACACTGCATCAACCAATAGC 58.987 45.455 0.00 0.00 0.00 2.97
3725 3915 9.364989 CATTTGGAGAGTAGAAAGAAAGAGTAG 57.635 37.037 0.00 0.00 0.00 2.57
3780 3970 2.436542 CAGGGGTTATCCGTTATCCACA 59.563 50.000 0.00 0.00 36.01 4.17
3781 3971 2.436911 ACAGGGGTTATCCGTTATCCAC 59.563 50.000 0.00 0.00 36.01 4.02
3782 3972 2.766736 ACAGGGGTTATCCGTTATCCA 58.233 47.619 0.00 0.00 36.01 3.41
3783 3973 3.851458 AACAGGGGTTATCCGTTATCC 57.149 47.619 0.00 0.00 34.87 2.59
3785 3975 4.019141 TGACAAACAGGGGTTATCCGTTAT 60.019 41.667 0.00 0.00 35.82 1.89
3786 3976 3.327172 TGACAAACAGGGGTTATCCGTTA 59.673 43.478 0.00 0.00 35.82 3.18
3787 3977 2.106857 TGACAAACAGGGGTTATCCGTT 59.893 45.455 0.00 0.00 35.82 4.44
3788 3978 1.700739 TGACAAACAGGGGTTATCCGT 59.299 47.619 0.00 0.00 35.82 4.69
3789 3979 2.483014 TGACAAACAGGGGTTATCCG 57.517 50.000 0.00 0.00 35.82 4.18
3801 3991 5.459762 CACACCATGTTTCTGAATGACAAAC 59.540 40.000 0.00 0.00 0.00 2.93
3812 4002 8.181904 AGAACAATTTATCACACCATGTTTCT 57.818 30.769 0.00 0.00 30.37 2.52
3969 5654 0.606401 TGCCGCTTTTTCTCTCCTGG 60.606 55.000 0.00 0.00 0.00 4.45
3979 5664 1.040339 TCCCAACTGTTGCCGCTTTT 61.040 50.000 14.94 0.00 0.00 2.27
3980 5665 0.827507 ATCCCAACTGTTGCCGCTTT 60.828 50.000 14.94 0.00 0.00 3.51
4031 5716 9.862371 GATCGATTATAATAGTTGGACAGATGT 57.138 33.333 0.00 0.00 0.00 3.06
4032 5717 9.014533 CGATCGATTATAATAGTTGGACAGATG 57.985 37.037 10.26 0.00 0.00 2.90
4174 6495 5.414789 TGGTGATCTGAGTTTCCGAAATA 57.585 39.130 0.00 0.00 0.00 1.40
4190 6511 2.596346 TGCTGTTGAATGGTTGGTGAT 58.404 42.857 0.00 0.00 0.00 3.06
4277 6598 5.355596 GTGTCCTCTTGAGACTTATCATGG 58.644 45.833 0.00 0.00 34.50 3.66
4283 6604 3.572642 TGTGGTGTCCTCTTGAGACTTA 58.427 45.455 0.00 0.00 37.41 2.24
4289 6610 3.054728 TGAAGTTTGTGGTGTCCTCTTGA 60.055 43.478 0.00 0.00 0.00 3.02
4296 6617 3.309954 GTGACTCTGAAGTTTGTGGTGTC 59.690 47.826 0.00 0.00 35.28 3.67
4306 6627 7.526142 TCAAACTGTATAGTGACTCTGAAGT 57.474 36.000 0.00 0.00 37.19 3.01
4315 6636 7.400599 AACGGTAGATCAAACTGTATAGTGA 57.599 36.000 11.76 0.00 37.19 3.41
4329 6650 2.158957 TGCTCCATGGAAACGGTAGATC 60.159 50.000 17.00 0.00 0.00 2.75
4348 6669 6.033341 TCAGTAGATGTGTTTGTTTGTTTGC 58.967 36.000 0.00 0.00 0.00 3.68
4419 6740 5.754890 CACCATTGATCAGATGTCGAACATA 59.245 40.000 13.37 0.00 39.27 2.29
4444 6765 3.251484 TGGGGTAAAATTGCAAATGGGA 58.749 40.909 1.71 0.00 0.00 4.37
4445 6766 3.608796 CTGGGGTAAAATTGCAAATGGG 58.391 45.455 1.71 0.00 0.00 4.00
4446 6767 3.009026 GCTGGGGTAAAATTGCAAATGG 58.991 45.455 1.71 0.00 0.00 3.16
4447 6768 2.672381 CGCTGGGGTAAAATTGCAAATG 59.328 45.455 1.71 0.00 0.00 2.32
4448 6769 2.934801 GCGCTGGGGTAAAATTGCAAAT 60.935 45.455 1.71 0.00 0.00 2.32
4449 6770 1.606737 GCGCTGGGGTAAAATTGCAAA 60.607 47.619 1.71 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.