Multiple sequence alignment - TraesCS7D01G301900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G301900 chr7D 100.000 4091 0 0 1 4091 382114567 382118657 0.000000e+00 7555.0
1 TraesCS7D01G301900 chr7D 100.000 3440 0 0 4537 7976 382119103 382122542 0.000000e+00 6353.0
2 TraesCS7D01G301900 chr7D 93.750 208 6 4 555 762 381858564 381858364 1.010000e-78 305.0
3 TraesCS7D01G301900 chr7D 85.714 147 19 2 2417 2562 540633268 540633123 3.850000e-33 154.0
4 TraesCS7D01G301900 chr7D 92.473 93 7 0 4800 4892 540863758 540863666 5.020000e-27 134.0
5 TraesCS7D01G301900 chr7B 96.427 3191 75 14 882 4045 376348551 376351729 0.000000e+00 5225.0
6 TraesCS7D01G301900 chr7B 96.670 1982 46 11 5530 7500 376357580 376359552 0.000000e+00 3277.0
7 TraesCS7D01G301900 chr7B 94.118 765 20 3 4891 5632 376356815 376357577 0.000000e+00 1140.0
8 TraesCS7D01G301900 chr7B 97.115 208 5 1 4606 4813 376356613 376356819 4.580000e-92 350.0
9 TraesCS7D01G301900 chr7B 90.868 219 12 5 7751 7969 376360172 376360382 3.640000e-73 287.0
10 TraesCS7D01G301900 chr7B 96.330 109 2 2 778 884 376347654 376347762 2.290000e-40 178.0
11 TraesCS7D01G301900 chr7B 87.770 139 7 2 7499 7637 376359646 376359774 3.850000e-33 154.0
12 TraesCS7D01G301900 chr7B 91.000 100 4 3 4798 4892 708066817 708066916 6.500000e-26 130.0
13 TraesCS7D01G301900 chr7B 89.320 103 10 1 4796 4898 516805207 516805106 2.340000e-25 128.0
14 TraesCS7D01G301900 chr7B 95.775 71 3 0 4537 4607 376351852 376351922 1.820000e-21 115.0
15 TraesCS7D01G301900 chr7B 88.750 80 8 1 7406 7485 3887450 3887528 6.590000e-16 97.1
16 TraesCS7D01G301900 chr7B 93.846 65 2 2 2904 2966 165708292 165708228 6.590000e-16 97.1
17 TraesCS7D01G301900 chr7B 92.424 66 3 2 7403 7468 596678095 596678158 8.520000e-15 93.5
18 TraesCS7D01G301900 chr7B 100.000 44 0 0 7640 7683 376359857 376359900 1.840000e-11 82.4
19 TraesCS7D01G301900 chr7B 92.857 42 3 0 4910 4951 427700119 427700160 2.400000e-05 62.1
20 TraesCS7D01G301900 chr7A 96.589 2609 52 8 1518 4091 429734704 429737310 0.000000e+00 4290.0
21 TraesCS7D01G301900 chr7A 97.196 1819 37 8 5827 7638 429738663 429740474 0.000000e+00 3064.0
22 TraesCS7D01G301900 chr7A 96.396 777 19 4 752 1519 429733712 429734488 0.000000e+00 1271.0
23 TraesCS7D01G301900 chr7A 94.407 751 10 5 5113 5831 429737832 429738582 0.000000e+00 1125.0
24 TraesCS7D01G301900 chr7A 98.810 504 5 1 1 504 708282250 708281748 0.000000e+00 896.0
25 TraesCS7D01G301900 chr7A 97.445 274 6 1 4537 4810 429737370 429737642 4.360000e-127 466.0
26 TraesCS7D01G301900 chr7A 95.437 263 10 2 7715 7976 429740653 429740914 1.240000e-112 418.0
27 TraesCS7D01G301900 chr7A 96.335 191 7 0 4890 5080 429737643 429737833 1.670000e-81 315.0
28 TraesCS7D01G301900 chr4D 99.206 504 3 1 1 504 123450490 123449988 0.000000e+00 907.0
29 TraesCS7D01G301900 chr2B 99.008 504 4 1 1 504 234542664 234542162 0.000000e+00 902.0
30 TraesCS7D01G301900 chr2B 84.337 83 8 3 4911 4992 692467663 692467741 8.580000e-10 76.8
31 TraesCS7D01G301900 chr1A 99.008 504 4 1 1 504 278519706 278520208 0.000000e+00 902.0
32 TraesCS7D01G301900 chr1A 95.161 62 2 1 2906 2966 399497076 399497137 6.590000e-16 97.1
33 TraesCS7D01G301900 chr1A 86.585 82 5 3 2906 2981 558328726 558328645 1.430000e-12 86.1
34 TraesCS7D01G301900 chrUn 98.810 504 5 1 1 504 217906164 217906666 0.000000e+00 896.0
35 TraesCS7D01G301900 chr3B 98.810 504 5 1 1 504 6012270 6011768 0.000000e+00 896.0
36 TraesCS7D01G301900 chr3B 100.000 93 0 0 7843 7935 683521232 683521140 1.060000e-38 172.0
37 TraesCS7D01G301900 chr3B 96.117 103 3 1 7834 7935 683440132 683440030 4.950000e-37 167.0
38 TraesCS7D01G301900 chr3B 93.333 90 6 0 4807 4896 132527384 132527295 5.020000e-27 134.0
39 TraesCS7D01G301900 chr3B 89.109 101 11 0 4792 4892 380683953 380683853 8.400000e-25 126.0
40 TraesCS7D01G301900 chr3B 80.172 116 14 5 5819 5933 744551343 744551236 2.390000e-10 78.7
41 TraesCS7D01G301900 chr4B 98.611 504 6 1 1 504 209105154 209105656 0.000000e+00 891.0
42 TraesCS7D01G301900 chr4B 98.611 504 6 1 1 504 495481144 495480642 0.000000e+00 891.0
43 TraesCS7D01G301900 chr4B 85.227 176 20 5 2391 2562 133360461 133360288 8.230000e-40 176.0
44 TraesCS7D01G301900 chr4B 78.033 305 44 9 2583 2872 133360298 133360002 3.830000e-38 171.0
45 TraesCS7D01G301900 chr3A 98.611 504 6 1 1 504 495106264 495105762 0.000000e+00 891.0
46 TraesCS7D01G301900 chr3A 98.058 103 0 1 7843 7945 654356318 654356218 2.290000e-40 178.0
47 TraesCS7D01G301900 chr3A 86.486 148 17 3 2417 2562 37970787 37970641 8.280000e-35 159.0
48 TraesCS7D01G301900 chr1B 89.474 190 16 4 556 745 320987621 320987436 3.720000e-58 237.0
49 TraesCS7D01G301900 chr1B 94.231 104 3 2 7835 7935 508549895 508549792 1.070000e-33 156.0
50 TraesCS7D01G301900 chr1B 91.753 97 7 1 4800 4896 327340598 327340503 5.020000e-27 134.0
51 TraesCS7D01G301900 chr2D 97.273 110 2 1 7681 7790 38175307 38175199 1.370000e-42 185.0
52 TraesCS7D01G301900 chr2D 83.696 184 23 6 2383 2562 615214016 615213836 4.950000e-37 167.0
53 TraesCS7D01G301900 chr2D 90.909 44 4 0 4911 4954 566989003 566989046 8.640000e-05 60.2
54 TraesCS7D01G301900 chr6B 95.238 105 5 0 7842 7946 49737563 49737667 4.950000e-37 167.0
55 TraesCS7D01G301900 chr6B 80.172 116 14 5 5819 5933 445408249 445408142 2.390000e-10 78.7
56 TraesCS7D01G301900 chr6B 95.455 44 2 0 4911 4954 101731940 101731983 3.990000e-08 71.3
57 TraesCS7D01G301900 chr4A 93.636 110 4 3 7831 7937 679256619 679256510 2.300000e-35 161.0
58 TraesCS7D01G301900 chr4A 91.379 58 4 1 4897 4953 162414658 162414715 2.390000e-10 78.7
59 TraesCS7D01G301900 chr6A 94.231 104 6 0 7831 7934 28419709 28419812 8.280000e-35 159.0
60 TraesCS7D01G301900 chr6A 90.816 98 9 0 4799 4896 169203404 169203307 1.810000e-26 132.0
61 TraesCS7D01G301900 chr6A 93.750 64 2 2 2904 2966 104308555 104308493 2.370000e-15 95.3
62 TraesCS7D01G301900 chr6A 88.158 76 6 3 2900 2972 509276949 509277024 3.970000e-13 87.9
63 TraesCS7D01G301900 chr3D 85.811 148 18 3 2417 2562 604383281 604383427 3.850000e-33 154.0
64 TraesCS7D01G301900 chr3D 87.059 85 7 2 4911 4994 133538560 133538641 8.520000e-15 93.5
65 TraesCS7D01G301900 chr3D 90.141 71 4 3 2905 2974 524219789 524219721 1.100000e-13 89.8
66 TraesCS7D01G301900 chr6D 85.235 149 18 4 2417 2562 458425627 458425774 4.990000e-32 150.0
67 TraesCS7D01G301900 chr6D 84.564 149 19 4 2417 2562 458415886 458416033 2.320000e-30 145.0
68 TraesCS7D01G301900 chr5B 88.785 107 8 4 4807 4911 477498429 477498533 2.340000e-25 128.0
69 TraesCS7D01G301900 chr5B 84.800 125 16 3 4807 4931 218214435 218214314 1.090000e-23 122.0
70 TraesCS7D01G301900 chr5A 92.647 68 2 3 2902 2966 36365643 36365710 2.370000e-15 95.3
71 TraesCS7D01G301900 chr5A 80.172 116 14 5 5819 5933 598251743 598251636 2.390000e-10 78.7
72 TraesCS7D01G301900 chr1D 86.486 74 8 2 673 745 323119036 323118964 6.640000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G301900 chr7D 382114567 382122542 7975 False 6954.000000 7555 100.000000 1 7976 2 chr7D.!!$F1 7975
1 TraesCS7D01G301900 chr7B 376347654 376351922 4268 False 1839.333333 5225 96.177333 778 4607 3 chr7B.!!$F5 3829
2 TraesCS7D01G301900 chr7B 376356613 376360382 3769 False 881.733333 3277 94.423500 4606 7969 6 chr7B.!!$F6 3363
3 TraesCS7D01G301900 chr7A 429733712 429740914 7202 False 1564.142857 4290 96.257857 752 7976 7 chr7A.!!$F1 7224
4 TraesCS7D01G301900 chr7A 708281748 708282250 502 True 896.000000 896 98.810000 1 504 1 chr7A.!!$R1 503
5 TraesCS7D01G301900 chr4D 123449988 123450490 502 True 907.000000 907 99.206000 1 504 1 chr4D.!!$R1 503
6 TraesCS7D01G301900 chr2B 234542162 234542664 502 True 902.000000 902 99.008000 1 504 1 chr2B.!!$R1 503
7 TraesCS7D01G301900 chr1A 278519706 278520208 502 False 902.000000 902 99.008000 1 504 1 chr1A.!!$F1 503
8 TraesCS7D01G301900 chrUn 217906164 217906666 502 False 896.000000 896 98.810000 1 504 1 chrUn.!!$F1 503
9 TraesCS7D01G301900 chr3B 6011768 6012270 502 True 896.000000 896 98.810000 1 504 1 chr3B.!!$R1 503
10 TraesCS7D01G301900 chr4B 209105154 209105656 502 False 891.000000 891 98.611000 1 504 1 chr4B.!!$F1 503
11 TraesCS7D01G301900 chr4B 495480642 495481144 502 True 891.000000 891 98.611000 1 504 1 chr4B.!!$R1 503
12 TraesCS7D01G301900 chr3A 495105762 495106264 502 True 891.000000 891 98.611000 1 504 1 chr3A.!!$R2 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 705 0.030101 TTTTCTGCAAAAGTCCCGCG 59.970 50.000 0.00 0.0 0.00 6.46 F
736 737 0.180406 ACAGACTCAACCGGTGCTTT 59.820 50.000 8.52 0.0 0.00 3.51 F
1243 2040 0.701731 TGGGGGACATTACAGGGTTG 59.298 55.000 0.00 0.0 0.00 3.77 F
2026 3044 0.808125 TGATGATTGCGTTTTCCCCG 59.192 50.000 0.00 0.0 0.00 5.73 F
3698 4742 1.264288 GACAACTTCACCAAAGAGCGG 59.736 52.381 0.00 0.0 38.44 5.52 F
4822 5883 0.039180 TTGCTACTCTCTCCGTCCCA 59.961 55.000 0.00 0.0 0.00 4.37 F
4823 5884 0.680280 TGCTACTCTCTCCGTCCCAC 60.680 60.000 0.00 0.0 0.00 4.61 F
4827 5888 0.898320 ACTCTCTCCGTCCCACAATG 59.102 55.000 0.00 0.0 0.00 2.82 F
5456 6519 1.607148 GCACTTGCCTTAAGGAACGTT 59.393 47.619 26.21 0.0 40.84 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1773 2791 0.874390 GTGACAAAAGGATGCGCTCA 59.126 50.000 9.73 0.0 0.00 4.26 R
2642 3666 5.391312 AGAATGGGCAGAAATGTAACAAC 57.609 39.130 0.00 0.0 0.00 3.32 R
2858 3898 0.368907 GCGTACACATAGTTGCCACG 59.631 55.000 0.00 0.0 0.00 4.94 R
3908 4952 5.482006 AGATACAAAAATCAAAAGGCCTGC 58.518 37.500 5.69 0.0 0.00 4.85 R
4878 5939 0.389757 GCAAGATACTCCCTCCGTCC 59.610 60.000 0.00 0.0 0.00 4.79 R
5894 7203 2.057922 ACTTCTGGGCTTCTTCCTTCA 58.942 47.619 0.00 0.0 0.00 3.02 R
6454 7764 4.408182 ACTGCATAACCATGTAGAGGTC 57.592 45.455 9.30 0.0 44.99 3.85 R
6777 8087 4.720090 CAGACAGTGTCAGCATCATTTTC 58.280 43.478 24.73 0.0 34.60 2.29 R
7195 8511 2.555757 AGCCTCAAGAGTTGATGTTTGC 59.444 45.455 0.00 0.0 39.30 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
416 417 1.098712 AAGCGAGTGCACCGGAAAAA 61.099 50.000 23.09 0.00 46.23 1.94
504 505 1.485124 TTGCCGAGAGATAGGAGCAA 58.515 50.000 0.00 0.00 37.85 3.91
505 506 1.485124 TGCCGAGAGATAGGAGCAAA 58.515 50.000 0.00 0.00 0.00 3.68
506 507 2.042464 TGCCGAGAGATAGGAGCAAAT 58.958 47.619 0.00 0.00 0.00 2.32
507 508 3.230976 TGCCGAGAGATAGGAGCAAATA 58.769 45.455 0.00 0.00 0.00 1.40
508 509 3.256879 TGCCGAGAGATAGGAGCAAATAG 59.743 47.826 0.00 0.00 0.00 1.73
509 510 3.843999 CCGAGAGATAGGAGCAAATAGC 58.156 50.000 0.00 0.00 46.19 2.97
524 525 6.054035 GCAAATAGCCTATCTGTTCAAGTC 57.946 41.667 0.00 0.00 37.23 3.01
525 526 5.008118 GCAAATAGCCTATCTGTTCAAGTCC 59.992 44.000 0.00 0.00 37.23 3.85
526 527 5.957771 AATAGCCTATCTGTTCAAGTCCA 57.042 39.130 0.00 0.00 0.00 4.02
527 528 6.506538 AATAGCCTATCTGTTCAAGTCCAT 57.493 37.500 0.00 0.00 0.00 3.41
528 529 4.851639 AGCCTATCTGTTCAAGTCCATT 57.148 40.909 0.00 0.00 0.00 3.16
529 530 5.957771 AGCCTATCTGTTCAAGTCCATTA 57.042 39.130 0.00 0.00 0.00 1.90
530 531 5.675538 AGCCTATCTGTTCAAGTCCATTAC 58.324 41.667 0.00 0.00 0.00 1.89
531 532 5.189736 AGCCTATCTGTTCAAGTCCATTACA 59.810 40.000 0.00 0.00 0.00 2.41
532 533 5.525378 GCCTATCTGTTCAAGTCCATTACAG 59.475 44.000 0.00 0.00 38.00 2.74
533 534 6.644347 CCTATCTGTTCAAGTCCATTACAGT 58.356 40.000 0.00 0.00 37.90 3.55
534 535 7.106239 CCTATCTGTTCAAGTCCATTACAGTT 58.894 38.462 0.00 0.00 37.90 3.16
535 536 8.258007 CCTATCTGTTCAAGTCCATTACAGTTA 58.742 37.037 0.00 0.00 37.90 2.24
536 537 9.653287 CTATCTGTTCAAGTCCATTACAGTTAA 57.347 33.333 0.00 0.00 37.90 2.01
538 539 8.918202 TCTGTTCAAGTCCATTACAGTTAATT 57.082 30.769 0.00 0.00 37.90 1.40
539 540 8.783093 TCTGTTCAAGTCCATTACAGTTAATTG 58.217 33.333 0.00 0.00 37.90 2.32
540 541 8.684386 TGTTCAAGTCCATTACAGTTAATTGA 57.316 30.769 4.81 0.00 0.00 2.57
541 542 8.564574 TGTTCAAGTCCATTACAGTTAATTGAC 58.435 33.333 4.81 0.00 39.24 3.18
542 543 7.681939 TCAAGTCCATTACAGTTAATTGACC 57.318 36.000 4.81 0.00 39.55 4.02
543 544 7.227873 TCAAGTCCATTACAGTTAATTGACCA 58.772 34.615 4.81 0.00 39.55 4.02
544 545 7.174253 TCAAGTCCATTACAGTTAATTGACCAC 59.826 37.037 4.81 0.00 39.55 4.16
545 546 5.944007 AGTCCATTACAGTTAATTGACCACC 59.056 40.000 4.81 0.00 39.55 4.61
546 547 4.938832 TCCATTACAGTTAATTGACCACCG 59.061 41.667 4.81 0.00 0.00 4.94
547 548 4.095782 CCATTACAGTTAATTGACCACCGG 59.904 45.833 0.00 0.00 0.00 5.28
548 549 2.943036 ACAGTTAATTGACCACCGGT 57.057 45.000 0.00 0.00 39.44 5.28
549 550 3.217681 ACAGTTAATTGACCACCGGTT 57.782 42.857 2.97 0.00 35.25 4.44
550 551 3.558033 ACAGTTAATTGACCACCGGTTT 58.442 40.909 2.97 0.00 35.25 3.27
551 552 3.955551 ACAGTTAATTGACCACCGGTTTT 59.044 39.130 2.97 0.00 35.25 2.43
552 553 4.403113 ACAGTTAATTGACCACCGGTTTTT 59.597 37.500 2.97 0.00 35.25 1.94
582 583 1.439679 CTTACAAAGGACTGCGGACC 58.560 55.000 5.85 5.85 0.00 4.46
583 584 0.759959 TTACAAAGGACTGCGGACCA 59.240 50.000 16.55 0.00 0.00 4.02
584 585 0.759959 TACAAAGGACTGCGGACCAA 59.240 50.000 16.55 0.00 0.00 3.67
585 586 0.106918 ACAAAGGACTGCGGACCAAA 60.107 50.000 16.55 0.00 0.00 3.28
586 587 1.247567 CAAAGGACTGCGGACCAAAT 58.752 50.000 16.55 0.00 0.00 2.32
587 588 2.224670 ACAAAGGACTGCGGACCAAATA 60.225 45.455 16.55 0.00 0.00 1.40
588 589 2.109425 AAGGACTGCGGACCAAATAC 57.891 50.000 16.55 0.00 0.00 1.89
589 590 0.252197 AGGACTGCGGACCAAATACC 59.748 55.000 16.55 0.00 0.00 2.73
601 602 6.856135 GGACCAAATACCGAAAACTATAGG 57.144 41.667 4.43 0.00 0.00 2.57
602 603 5.761726 GGACCAAATACCGAAAACTATAGGG 59.238 44.000 4.43 0.00 0.00 3.53
603 604 5.128205 ACCAAATACCGAAAACTATAGGGC 58.872 41.667 4.43 0.00 0.00 5.19
604 605 5.104235 ACCAAATACCGAAAACTATAGGGCT 60.104 40.000 4.43 0.00 0.00 5.19
605 606 5.826208 CCAAATACCGAAAACTATAGGGCTT 59.174 40.000 4.43 0.00 0.00 4.35
606 607 6.320418 CCAAATACCGAAAACTATAGGGCTTT 59.680 38.462 4.43 0.87 0.00 3.51
607 608 6.937436 AATACCGAAAACTATAGGGCTTTG 57.063 37.500 4.43 0.00 0.00 2.77
608 609 4.296621 ACCGAAAACTATAGGGCTTTGT 57.703 40.909 4.43 0.00 0.00 2.83
609 610 4.659115 ACCGAAAACTATAGGGCTTTGTT 58.341 39.130 4.43 0.00 0.00 2.83
610 611 4.698780 ACCGAAAACTATAGGGCTTTGTTC 59.301 41.667 4.43 0.00 0.00 3.18
611 612 4.201783 CCGAAAACTATAGGGCTTTGTTCG 60.202 45.833 4.43 5.32 36.12 3.95
612 613 4.659088 GAAAACTATAGGGCTTTGTTCGC 58.341 43.478 4.43 0.00 0.00 4.70
613 614 3.343941 AACTATAGGGCTTTGTTCGCA 57.656 42.857 4.43 0.00 0.00 5.10
614 615 3.343941 ACTATAGGGCTTTGTTCGCAA 57.656 42.857 4.43 0.00 34.91 4.85
615 616 3.681593 ACTATAGGGCTTTGTTCGCAAA 58.318 40.909 4.43 0.00 44.02 3.68
616 617 4.076394 ACTATAGGGCTTTGTTCGCAAAA 58.924 39.130 4.43 0.00 45.30 2.44
617 618 4.705023 ACTATAGGGCTTTGTTCGCAAAAT 59.295 37.500 4.43 0.00 45.30 1.82
618 619 2.908688 AGGGCTTTGTTCGCAAAATT 57.091 40.000 0.00 0.00 45.30 1.82
619 620 2.754472 AGGGCTTTGTTCGCAAAATTC 58.246 42.857 0.00 0.00 45.30 2.17
620 621 2.365293 AGGGCTTTGTTCGCAAAATTCT 59.635 40.909 0.00 0.00 45.30 2.40
621 622 3.130633 GGGCTTTGTTCGCAAAATTCTT 58.869 40.909 0.00 0.00 45.30 2.52
622 623 4.038642 AGGGCTTTGTTCGCAAAATTCTTA 59.961 37.500 0.00 0.00 45.30 2.10
623 624 4.929211 GGGCTTTGTTCGCAAAATTCTTAT 59.071 37.500 0.00 0.00 45.30 1.73
624 625 6.071616 AGGGCTTTGTTCGCAAAATTCTTATA 60.072 34.615 0.00 0.00 45.30 0.98
625 626 6.034577 GGGCTTTGTTCGCAAAATTCTTATAC 59.965 38.462 0.00 0.00 45.30 1.47
626 627 6.237201 GGCTTTGTTCGCAAAATTCTTATACG 60.237 38.462 0.00 0.00 45.30 3.06
627 628 6.521821 GCTTTGTTCGCAAAATTCTTATACGA 59.478 34.615 0.00 0.00 45.30 3.43
628 629 7.060174 GCTTTGTTCGCAAAATTCTTATACGAA 59.940 33.333 0.00 0.00 45.30 3.85
629 630 8.429739 TTTGTTCGCAAAATTCTTATACGAAG 57.570 30.769 0.00 0.00 43.36 3.79
630 631 6.019152 TGTTCGCAAAATTCTTATACGAAGC 58.981 36.000 0.00 0.00 38.55 3.86
631 632 4.817733 TCGCAAAATTCTTATACGAAGCG 58.182 39.130 13.66 13.66 36.09 4.68
632 633 4.327898 TCGCAAAATTCTTATACGAAGCGT 59.672 37.500 17.10 0.00 44.35 5.07
633 634 5.019498 CGCAAAATTCTTATACGAAGCGTT 58.981 37.500 12.35 0.00 41.54 4.84
634 635 5.506832 CGCAAAATTCTTATACGAAGCGTTT 59.493 36.000 12.35 4.62 41.54 3.60
635 636 6.032042 CGCAAAATTCTTATACGAAGCGTTTT 59.968 34.615 12.35 5.88 41.54 2.43
636 637 7.408921 CGCAAAATTCTTATACGAAGCGTTTTT 60.409 33.333 12.35 5.61 41.54 1.94
656 657 5.767816 TTTTCCACTTAAGAAAGGACTGC 57.232 39.130 10.09 0.00 37.01 4.40
657 658 3.040147 TCCACTTAAGAAAGGACTGCG 57.960 47.619 10.09 0.00 37.01 5.18
658 659 2.076863 CCACTTAAGAAAGGACTGCGG 58.923 52.381 10.09 0.00 37.01 5.69
659 660 2.076863 CACTTAAGAAAGGACTGCGGG 58.923 52.381 10.09 0.00 37.01 6.13
660 661 1.697982 ACTTAAGAAAGGACTGCGGGT 59.302 47.619 10.09 0.00 37.01 5.28
661 662 2.105993 ACTTAAGAAAGGACTGCGGGTT 59.894 45.455 10.09 0.00 37.01 4.11
662 663 2.178912 TAAGAAAGGACTGCGGGTTG 57.821 50.000 0.00 0.00 0.00 3.77
663 664 0.472471 AAGAAAGGACTGCGGGTTGA 59.528 50.000 0.00 0.00 0.00 3.18
664 665 0.472471 AGAAAGGACTGCGGGTTGAA 59.528 50.000 0.00 0.00 0.00 2.69
665 666 1.073923 AGAAAGGACTGCGGGTTGAAT 59.926 47.619 0.00 0.00 0.00 2.57
666 667 1.200020 GAAAGGACTGCGGGTTGAATG 59.800 52.381 0.00 0.00 0.00 2.67
667 668 0.400213 AAGGACTGCGGGTTGAATGA 59.600 50.000 0.00 0.00 0.00 2.57
668 669 0.321653 AGGACTGCGGGTTGAATGAC 60.322 55.000 0.00 0.00 0.00 3.06
669 670 1.305930 GGACTGCGGGTTGAATGACC 61.306 60.000 0.00 0.00 39.04 4.02
678 679 3.934457 GGTTGAATGACCCGAAAACAT 57.066 42.857 0.00 0.00 33.41 2.71
680 681 5.379732 GGTTGAATGACCCGAAAACATAA 57.620 39.130 0.00 0.00 33.41 1.90
681 682 5.399013 GGTTGAATGACCCGAAAACATAAG 58.601 41.667 0.00 0.00 33.41 1.73
682 683 5.399013 GTTGAATGACCCGAAAACATAAGG 58.601 41.667 0.00 0.00 0.00 2.69
688 689 3.953712 CCCGAAAACATAAGGGCTTTT 57.046 42.857 0.00 0.00 37.07 2.27
689 690 3.845178 CCCGAAAACATAAGGGCTTTTC 58.155 45.455 0.00 0.00 37.07 2.29
690 691 3.509967 CCCGAAAACATAAGGGCTTTTCT 59.490 43.478 6.03 0.00 37.07 2.52
691 692 4.485163 CCGAAAACATAAGGGCTTTTCTG 58.515 43.478 6.03 0.00 33.52 3.02
692 693 3.920412 CGAAAACATAAGGGCTTTTCTGC 59.080 43.478 6.03 0.00 33.52 4.26
693 694 4.558496 CGAAAACATAAGGGCTTTTCTGCA 60.558 41.667 6.03 0.00 33.52 4.41
694 695 4.953940 AAACATAAGGGCTTTTCTGCAA 57.046 36.364 0.00 0.00 34.04 4.08
695 696 4.953940 AACATAAGGGCTTTTCTGCAAA 57.046 36.364 0.00 0.00 34.04 3.68
696 697 4.953940 ACATAAGGGCTTTTCTGCAAAA 57.046 36.364 0.00 0.00 34.04 2.44
701 702 2.154854 GGCTTTTCTGCAAAAGTCCC 57.845 50.000 11.51 3.17 45.09 4.46
702 703 1.602920 GGCTTTTCTGCAAAAGTCCCG 60.603 52.381 11.51 0.00 45.09 5.14
703 704 1.770957 CTTTTCTGCAAAAGTCCCGC 58.229 50.000 3.17 0.00 42.52 6.13
704 705 0.030101 TTTTCTGCAAAAGTCCCGCG 59.970 50.000 0.00 0.00 0.00 6.46
705 706 0.816018 TTTCTGCAAAAGTCCCGCGA 60.816 50.000 8.23 0.00 0.00 5.87
706 707 1.503818 TTCTGCAAAAGTCCCGCGAC 61.504 55.000 8.23 0.00 39.50 5.19
707 708 3.295228 CTGCAAAAGTCCCGCGACG 62.295 63.158 8.23 0.00 44.28 5.12
709 710 2.663852 CAAAAGTCCCGCGACGGT 60.664 61.111 8.23 0.00 46.80 4.83
710 711 2.663852 AAAAGTCCCGCGACGGTG 60.664 61.111 8.23 8.40 46.80 4.94
711 712 3.154584 AAAAGTCCCGCGACGGTGA 62.155 57.895 8.23 10.20 46.80 4.02
712 713 2.647680 AAAAGTCCCGCGACGGTGAA 62.648 55.000 8.23 0.70 46.80 3.18
713 714 2.444700 AAAGTCCCGCGACGGTGAAT 62.445 55.000 8.23 9.61 46.80 2.57
714 715 2.830704 AAGTCCCGCGACGGTGAATC 62.831 60.000 8.23 4.37 46.80 2.52
715 716 4.137872 TCCCGCGACGGTGAATCC 62.138 66.667 8.23 0.00 46.80 3.01
726 727 2.743636 GGTGAATCCGACAGACTCAA 57.256 50.000 0.00 0.00 0.00 3.02
727 728 2.338500 GGTGAATCCGACAGACTCAAC 58.662 52.381 0.00 0.00 0.00 3.18
728 729 2.338500 GTGAATCCGACAGACTCAACC 58.662 52.381 0.00 0.00 0.00 3.77
729 730 1.067846 TGAATCCGACAGACTCAACCG 60.068 52.381 0.00 0.00 0.00 4.44
730 731 0.246635 AATCCGACAGACTCAACCGG 59.753 55.000 0.00 0.00 41.36 5.28
731 732 0.898789 ATCCGACAGACTCAACCGGT 60.899 55.000 0.00 0.00 40.87 5.28
732 733 1.372997 CCGACAGACTCAACCGGTG 60.373 63.158 8.52 2.16 35.83 4.94
733 734 2.022129 CGACAGACTCAACCGGTGC 61.022 63.158 8.52 0.00 0.00 5.01
734 735 1.367840 GACAGACTCAACCGGTGCT 59.632 57.895 8.52 0.00 0.00 4.40
735 736 0.249911 GACAGACTCAACCGGTGCTT 60.250 55.000 8.52 0.00 0.00 3.91
736 737 0.180406 ACAGACTCAACCGGTGCTTT 59.820 50.000 8.52 0.00 0.00 3.51
737 738 1.414919 ACAGACTCAACCGGTGCTTTA 59.585 47.619 8.52 0.00 0.00 1.85
738 739 2.158871 ACAGACTCAACCGGTGCTTTAA 60.159 45.455 8.52 0.00 0.00 1.52
739 740 3.074412 CAGACTCAACCGGTGCTTTAAT 58.926 45.455 8.52 0.00 0.00 1.40
740 741 3.502211 CAGACTCAACCGGTGCTTTAATT 59.498 43.478 8.52 0.00 0.00 1.40
741 742 4.693566 CAGACTCAACCGGTGCTTTAATTA 59.306 41.667 8.52 0.00 0.00 1.40
742 743 5.354234 CAGACTCAACCGGTGCTTTAATTAT 59.646 40.000 8.52 0.00 0.00 1.28
743 744 5.944007 AGACTCAACCGGTGCTTTAATTATT 59.056 36.000 8.52 0.00 0.00 1.40
744 745 7.065324 CAGACTCAACCGGTGCTTTAATTATTA 59.935 37.037 8.52 0.00 0.00 0.98
745 746 7.773690 AGACTCAACCGGTGCTTTAATTATTAT 59.226 33.333 8.52 0.00 0.00 1.28
746 747 8.967664 ACTCAACCGGTGCTTTAATTATTATA 57.032 30.769 8.52 0.00 0.00 0.98
747 748 9.398538 ACTCAACCGGTGCTTTAATTATTATAA 57.601 29.630 8.52 0.00 0.00 0.98
748 749 9.878599 CTCAACCGGTGCTTTAATTATTATAAG 57.121 33.333 8.52 0.00 0.00 1.73
749 750 8.842280 TCAACCGGTGCTTTAATTATTATAAGG 58.158 33.333 8.52 0.00 0.00 2.69
750 751 7.754851 ACCGGTGCTTTAATTATTATAAGGG 57.245 36.000 6.12 0.00 0.00 3.95
751 752 7.519927 ACCGGTGCTTTAATTATTATAAGGGA 58.480 34.615 6.12 0.00 0.00 4.20
752 753 8.000127 ACCGGTGCTTTAATTATTATAAGGGAA 59.000 33.333 6.12 0.00 0.00 3.97
753 754 8.852135 CCGGTGCTTTAATTATTATAAGGGAAA 58.148 33.333 0.00 0.00 0.00 3.13
771 772 7.555306 AGGGAAAAGATAAAGCGATCTAAAC 57.445 36.000 0.00 0.00 35.01 2.01
871 874 3.787001 CGGCCAGACCTCCTTCCC 61.787 72.222 2.24 0.00 35.61 3.97
974 1768 3.213402 CGTCTCCTCTCCGCCCTC 61.213 72.222 0.00 0.00 0.00 4.30
1243 2040 0.701731 TGGGGGACATTACAGGGTTG 59.298 55.000 0.00 0.00 0.00 3.77
1290 2087 4.430007 GCGTAATTGTGTACTCATCTGGA 58.570 43.478 0.00 0.00 0.00 3.86
1406 2206 6.916360 TTTTTCTTCAGGGAAACATATGCT 57.084 33.333 1.58 0.00 35.31 3.79
1435 2235 1.003839 TGCGCTTTCGGTGGAGATT 60.004 52.632 9.73 0.00 35.95 2.40
1719 2737 2.614481 CGCAGCCAAGGGAAGTTAGTAA 60.614 50.000 0.00 0.00 0.00 2.24
1750 2768 9.850198 AGGACTCTTAATTCTACGTAGTATCTT 57.150 33.333 21.53 12.83 44.56 2.40
1778 2796 6.479990 TGACAATTACTATTGAATCCTGAGCG 59.520 38.462 4.99 0.00 43.12 5.03
1842 2860 7.970614 CCTCTCTCTTTTATTACATTTGCAACC 59.029 37.037 0.00 0.00 0.00 3.77
2026 3044 0.808125 TGATGATTGCGTTTTCCCCG 59.192 50.000 0.00 0.00 0.00 5.73
2193 3213 9.213799 CTTTACATTTCTCTCTCTTAGCAACTT 57.786 33.333 0.00 0.00 0.00 2.66
2455 3478 4.083484 AGCAAAGTTTACATAGTTCACCGC 60.083 41.667 0.00 0.00 0.00 5.68
2642 3666 7.338800 AGTAATCTGAATATTTTGCCAGGTG 57.661 36.000 2.94 0.00 0.00 4.00
2765 3804 8.246430 TCCCTAGTTGATACAGGTGTAATTAG 57.754 38.462 0.00 0.00 33.76 1.73
2788 3827 5.824624 AGGTTCTGTATGAAATGTGCATAGG 59.175 40.000 0.00 0.00 36.30 2.57
2824 3864 4.513442 TCCCCGTGAAACTGATTAATCTG 58.487 43.478 17.92 17.92 31.75 2.90
2858 3898 4.866508 TCACTATCGGGATGGACATTAC 57.133 45.455 0.00 0.00 0.00 1.89
2979 4023 7.410120 ACAGAGAGAGTCCAATTTTTGTTTT 57.590 32.000 0.00 0.00 0.00 2.43
3698 4742 1.264288 GACAACTTCACCAAAGAGCGG 59.736 52.381 0.00 0.00 38.44 5.52
3828 4872 9.985730 AGATTTGTATTTGTTTCACATCACAAT 57.014 25.926 0.00 0.00 32.96 2.71
4026 5071 6.305272 TGATAGTCTTTGCTTCCTCTCAAT 57.695 37.500 0.00 0.00 0.00 2.57
4027 5072 6.715280 TGATAGTCTTTGCTTCCTCTCAATT 58.285 36.000 0.00 0.00 0.00 2.32
4028 5073 7.170965 TGATAGTCTTTGCTTCCTCTCAATTT 58.829 34.615 0.00 0.00 0.00 1.82
4603 5664 9.865321 CAAAATGAAGATATTGTGATTCCACTT 57.135 29.630 0.00 0.00 43.55 3.16
4655 5716 1.892474 GGAATTGGTGCCTGCAACTTA 59.108 47.619 8.84 0.00 34.17 2.24
4810 5871 9.692325 AAATGATCCTTCTCTTTAATTGCTACT 57.308 29.630 0.00 0.00 0.00 2.57
4811 5872 8.900983 ATGATCCTTCTCTTTAATTGCTACTC 57.099 34.615 0.00 0.00 0.00 2.59
4812 5873 8.083828 TGATCCTTCTCTTTAATTGCTACTCT 57.916 34.615 0.00 0.00 0.00 3.24
4813 5874 8.200792 TGATCCTTCTCTTTAATTGCTACTCTC 58.799 37.037 0.00 0.00 0.00 3.20
4814 5875 7.726033 TCCTTCTCTTTAATTGCTACTCTCT 57.274 36.000 0.00 0.00 0.00 3.10
4815 5876 7.777095 TCCTTCTCTTTAATTGCTACTCTCTC 58.223 38.462 0.00 0.00 0.00 3.20
4816 5877 6.983890 CCTTCTCTTTAATTGCTACTCTCTCC 59.016 42.308 0.00 0.00 0.00 3.71
4817 5878 6.137794 TCTCTTTAATTGCTACTCTCTCCG 57.862 41.667 0.00 0.00 0.00 4.63
4818 5879 5.652891 TCTCTTTAATTGCTACTCTCTCCGT 59.347 40.000 0.00 0.00 0.00 4.69
4819 5880 5.892568 TCTTTAATTGCTACTCTCTCCGTC 58.107 41.667 0.00 0.00 0.00 4.79
4820 5881 4.650754 TTAATTGCTACTCTCTCCGTCC 57.349 45.455 0.00 0.00 0.00 4.79
4821 5882 1.404843 ATTGCTACTCTCTCCGTCCC 58.595 55.000 0.00 0.00 0.00 4.46
4822 5883 0.039180 TTGCTACTCTCTCCGTCCCA 59.961 55.000 0.00 0.00 0.00 4.37
4823 5884 0.680280 TGCTACTCTCTCCGTCCCAC 60.680 60.000 0.00 0.00 0.00 4.61
4824 5885 0.680280 GCTACTCTCTCCGTCCCACA 60.680 60.000 0.00 0.00 0.00 4.17
4825 5886 1.835494 CTACTCTCTCCGTCCCACAA 58.165 55.000 0.00 0.00 0.00 3.33
4826 5887 2.379972 CTACTCTCTCCGTCCCACAAT 58.620 52.381 0.00 0.00 0.00 2.71
4827 5888 0.898320 ACTCTCTCCGTCCCACAATG 59.102 55.000 0.00 0.00 0.00 2.82
4828 5889 0.898320 CTCTCTCCGTCCCACAATGT 59.102 55.000 0.00 0.00 0.00 2.71
4829 5890 2.100197 CTCTCTCCGTCCCACAATGTA 58.900 52.381 0.00 0.00 0.00 2.29
4830 5891 2.496070 CTCTCTCCGTCCCACAATGTAA 59.504 50.000 0.00 0.00 0.00 2.41
4831 5892 2.496070 TCTCTCCGTCCCACAATGTAAG 59.504 50.000 0.00 0.00 0.00 2.34
4832 5893 2.496070 CTCTCCGTCCCACAATGTAAGA 59.504 50.000 0.00 0.00 0.00 2.10
4833 5894 2.232941 TCTCCGTCCCACAATGTAAGAC 59.767 50.000 5.24 5.24 0.00 3.01
4834 5895 1.972075 TCCGTCCCACAATGTAAGACA 59.028 47.619 13.19 0.00 0.00 3.41
4835 5896 2.569853 TCCGTCCCACAATGTAAGACAT 59.430 45.455 13.19 0.00 41.31 3.06
4837 5898 3.756434 CCGTCCCACAATGTAAGACATTT 59.244 43.478 13.19 0.00 45.80 2.32
4838 5899 4.217550 CCGTCCCACAATGTAAGACATTTT 59.782 41.667 13.19 0.00 45.80 1.82
4839 5900 5.278758 CCGTCCCACAATGTAAGACATTTTT 60.279 40.000 13.19 0.00 45.80 1.94
4884 5945 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
4885 5946 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
4886 5947 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
4887 5948 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
4888 5949 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
4946 6007 7.201750 GGTCCATATTAATTGTCGCTGGTTTAA 60.202 37.037 0.00 0.00 0.00 1.52
4983 6044 2.671130 AACCAGCGGCAATTAAATGG 57.329 45.000 1.45 1.25 0.00 3.16
4987 6048 2.361757 CCAGCGGCAATTAAATGGATCA 59.638 45.455 1.45 0.00 0.00 2.92
5163 6224 4.188247 TGAATCCAAACAGACTACTCCG 57.812 45.455 0.00 0.00 0.00 4.63
5374 6437 1.699083 CCCCTTTTCCCTTGTGCATTT 59.301 47.619 0.00 0.00 0.00 2.32
5456 6519 1.607148 GCACTTGCCTTAAGGAACGTT 59.393 47.619 26.21 0.00 40.84 3.99
5598 6815 7.218228 TCTTGGTGTAGACATTTCGTTACTA 57.782 36.000 0.00 0.00 0.00 1.82
5672 6890 6.375736 TGATAAAACTCCTTGAACACAACACA 59.624 34.615 0.00 0.00 0.00 3.72
5969 7278 3.455910 ACAGAGAAGGTATGGCAGCATTA 59.544 43.478 0.00 0.00 0.00 1.90
6127 7436 7.963465 GGTATGACAAGCTTCTAAAGTTTAAGC 59.037 37.037 13.11 13.11 44.70 3.09
6454 7764 9.888878 GTATGATATTCCACATTTGACATCTTG 57.111 33.333 0.00 0.00 0.00 3.02
6461 7771 5.248248 TCCACATTTGACATCTTGACCTCTA 59.752 40.000 0.00 0.00 0.00 2.43
6777 8087 2.164624 AGAGAAGGCTGCTGTAGTAACG 59.835 50.000 0.00 0.00 0.00 3.18
6902 8212 9.295825 TGTCATTTACATTCTTCCTTGTATGTT 57.704 29.630 0.00 0.00 33.58 2.71
7082 8395 1.003116 CTTGATCACCAGCGCATAAGC 60.003 52.381 11.47 0.00 37.42 3.09
7163 8479 3.535962 GGAGCTGAGCCCCGAGAG 61.536 72.222 0.00 0.00 0.00 3.20
7195 8511 5.572511 CCATTTCATGTTTGATGTGGTTACG 59.427 40.000 0.00 0.00 34.47 3.18
7296 8612 3.470709 ACTTCGATACATGGCTTGATGG 58.529 45.455 7.45 0.00 0.00 3.51
7370 8686 6.712095 AGCATCTCAGATTGTTTGTCAGTTTA 59.288 34.615 0.00 0.00 0.00 2.01
7439 8755 7.865889 TGGATGTATCTAGCACTAAAATACGTG 59.134 37.037 0.00 0.00 0.00 4.49
7456 8772 7.658179 AATACGTGCTAGATACATCCATTTG 57.342 36.000 0.00 0.00 0.00 2.32
7458 8774 5.050490 ACGTGCTAGATACATCCATTTGTC 58.950 41.667 0.00 0.00 0.00 3.18
7471 8787 7.596494 ACATCCATTTGTCTGACAAGTATTTG 58.404 34.615 21.13 18.30 39.53 2.32
7475 8791 4.447138 TTGTCTGACAAGTATTTGGGGT 57.553 40.909 18.69 0.00 38.66 4.95
7477 8793 3.000727 GTCTGACAAGTATTTGGGGTCG 58.999 50.000 2.24 0.00 38.66 4.79
7478 8794 2.027561 TCTGACAAGTATTTGGGGTCGG 60.028 50.000 2.81 0.00 38.66 4.79
7479 8795 1.979308 TGACAAGTATTTGGGGTCGGA 59.021 47.619 2.81 0.00 38.66 4.55
7480 8796 2.027561 TGACAAGTATTTGGGGTCGGAG 60.028 50.000 2.81 0.00 38.66 4.63
7606 9017 2.986479 GCCGAATGACCATGACAAAAAC 59.014 45.455 0.00 0.00 0.00 2.43
7707 9383 1.136695 CTGGCTCCAGTTTTGTTTGCA 59.863 47.619 7.75 0.00 39.10 4.08
7722 9398 5.793026 TGTTTGCAGTTTGGTGATTTTTC 57.207 34.783 0.00 0.00 0.00 2.29
7947 9680 6.362283 GTCGGTTTGTGTTTCTGAATTAATGG 59.638 38.462 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
416 417 3.379452 AGATCGATTCAGTTCCCCTTCT 58.621 45.455 0.00 0.00 0.00 2.85
504 505 5.957771 TGGACTTGAACAGATAGGCTATT 57.042 39.130 8.71 0.00 0.00 1.73
505 506 6.506538 AATGGACTTGAACAGATAGGCTAT 57.493 37.500 6.76 6.76 0.00 2.97
506 507 5.957771 AATGGACTTGAACAGATAGGCTA 57.042 39.130 0.00 0.00 0.00 3.93
507 508 4.851639 AATGGACTTGAACAGATAGGCT 57.148 40.909 0.00 0.00 0.00 4.58
508 509 5.428253 TGTAATGGACTTGAACAGATAGGC 58.572 41.667 0.00 0.00 0.00 3.93
509 510 6.644347 ACTGTAATGGACTTGAACAGATAGG 58.356 40.000 7.70 0.00 39.93 2.57
510 511 9.653287 TTAACTGTAATGGACTTGAACAGATAG 57.347 33.333 7.70 0.00 39.93 2.08
512 513 9.520515 AATTAACTGTAATGGACTTGAACAGAT 57.479 29.630 7.70 0.00 39.93 2.90
513 514 8.783093 CAATTAACTGTAATGGACTTGAACAGA 58.217 33.333 7.70 0.00 39.93 3.41
514 515 8.783093 TCAATTAACTGTAATGGACTTGAACAG 58.217 33.333 0.00 0.00 42.53 3.16
515 516 8.564574 GTCAATTAACTGTAATGGACTTGAACA 58.435 33.333 6.71 0.00 43.35 3.18
516 517 8.021396 GGTCAATTAACTGTAATGGACTTGAAC 58.979 37.037 11.81 0.00 44.96 3.18
517 518 7.721842 TGGTCAATTAACTGTAATGGACTTGAA 59.278 33.333 11.81 0.00 44.96 2.69
518 519 7.174253 GTGGTCAATTAACTGTAATGGACTTGA 59.826 37.037 11.81 0.00 44.96 3.02
519 520 7.305474 GTGGTCAATTAACTGTAATGGACTTG 58.695 38.462 11.81 0.00 44.96 3.16
520 521 6.433093 GGTGGTCAATTAACTGTAATGGACTT 59.567 38.462 11.81 0.00 44.96 3.01
521 522 5.944007 GGTGGTCAATTAACTGTAATGGACT 59.056 40.000 11.81 0.00 44.96 3.85
522 523 5.163794 CGGTGGTCAATTAACTGTAATGGAC 60.164 44.000 5.70 5.70 44.91 4.02
523 524 4.938832 CGGTGGTCAATTAACTGTAATGGA 59.061 41.667 0.00 0.00 30.04 3.41
524 525 4.095782 CCGGTGGTCAATTAACTGTAATGG 59.904 45.833 0.00 0.00 30.04 3.16
525 526 4.698304 ACCGGTGGTCAATTAACTGTAATG 59.302 41.667 6.12 0.00 30.04 1.90
526 527 4.913784 ACCGGTGGTCAATTAACTGTAAT 58.086 39.130 6.12 0.00 0.00 1.89
527 528 4.354893 ACCGGTGGTCAATTAACTGTAA 57.645 40.909 6.12 0.00 0.00 2.41
528 529 4.354893 AACCGGTGGTCAATTAACTGTA 57.645 40.909 8.52 0.00 33.12 2.74
529 530 2.943036 ACCGGTGGTCAATTAACTGT 57.057 45.000 6.12 0.00 0.00 3.55
530 531 4.577834 AAAACCGGTGGTCAATTAACTG 57.422 40.909 8.52 0.00 33.12 3.16
563 564 1.270625 TGGTCCGCAGTCCTTTGTAAG 60.271 52.381 0.00 0.00 0.00 2.34
564 565 0.759959 TGGTCCGCAGTCCTTTGTAA 59.240 50.000 0.00 0.00 0.00 2.41
565 566 0.759959 TTGGTCCGCAGTCCTTTGTA 59.240 50.000 0.00 0.00 0.00 2.41
566 567 0.106918 TTTGGTCCGCAGTCCTTTGT 60.107 50.000 0.00 0.00 0.00 2.83
567 568 1.247567 ATTTGGTCCGCAGTCCTTTG 58.752 50.000 0.00 0.00 0.00 2.77
568 569 2.433436 GTATTTGGTCCGCAGTCCTTT 58.567 47.619 0.00 0.00 0.00 3.11
569 570 1.339727 GGTATTTGGTCCGCAGTCCTT 60.340 52.381 0.00 0.00 0.00 3.36
570 571 0.252197 GGTATTTGGTCCGCAGTCCT 59.748 55.000 0.00 0.00 0.00 3.85
571 572 1.087771 CGGTATTTGGTCCGCAGTCC 61.088 60.000 0.00 0.00 40.28 3.85
572 573 0.108520 TCGGTATTTGGTCCGCAGTC 60.109 55.000 0.00 0.00 45.44 3.51
573 574 0.322322 TTCGGTATTTGGTCCGCAGT 59.678 50.000 0.00 0.00 45.44 4.40
574 575 1.444836 TTTCGGTATTTGGTCCGCAG 58.555 50.000 0.00 0.00 45.44 5.18
575 576 1.536331 GTTTTCGGTATTTGGTCCGCA 59.464 47.619 0.00 0.00 45.44 5.69
576 577 1.808343 AGTTTTCGGTATTTGGTCCGC 59.192 47.619 0.00 0.00 45.44 5.54
577 578 5.464389 CCTATAGTTTTCGGTATTTGGTCCG 59.536 44.000 0.00 0.00 46.93 4.79
578 579 5.761726 CCCTATAGTTTTCGGTATTTGGTCC 59.238 44.000 0.00 0.00 0.00 4.46
579 580 5.237996 GCCCTATAGTTTTCGGTATTTGGTC 59.762 44.000 0.00 0.00 0.00 4.02
580 581 5.104235 AGCCCTATAGTTTTCGGTATTTGGT 60.104 40.000 0.00 0.00 0.00 3.67
581 582 5.374071 AGCCCTATAGTTTTCGGTATTTGG 58.626 41.667 0.00 0.00 0.00 3.28
582 583 6.937436 AAGCCCTATAGTTTTCGGTATTTG 57.063 37.500 0.00 0.00 0.00 2.32
583 584 6.888088 ACAAAGCCCTATAGTTTTCGGTATTT 59.112 34.615 0.00 0.00 0.00 1.40
584 585 6.420638 ACAAAGCCCTATAGTTTTCGGTATT 58.579 36.000 0.00 0.00 0.00 1.89
585 586 5.997843 ACAAAGCCCTATAGTTTTCGGTAT 58.002 37.500 0.00 0.00 0.00 2.73
586 587 5.425196 ACAAAGCCCTATAGTTTTCGGTA 57.575 39.130 0.00 0.00 0.00 4.02
587 588 4.296621 ACAAAGCCCTATAGTTTTCGGT 57.703 40.909 0.00 0.00 0.00 4.69
588 589 4.201783 CGAACAAAGCCCTATAGTTTTCGG 60.202 45.833 0.00 0.00 0.00 4.30
589 590 4.726876 GCGAACAAAGCCCTATAGTTTTCG 60.727 45.833 0.00 2.20 0.00 3.46
590 591 4.155280 TGCGAACAAAGCCCTATAGTTTTC 59.845 41.667 0.00 0.00 0.00 2.29
591 592 4.076394 TGCGAACAAAGCCCTATAGTTTT 58.924 39.130 0.00 0.00 0.00 2.43
592 593 3.681593 TGCGAACAAAGCCCTATAGTTT 58.318 40.909 0.00 0.00 0.00 2.66
593 594 3.343941 TGCGAACAAAGCCCTATAGTT 57.656 42.857 0.00 0.00 0.00 2.24
594 595 3.343941 TTGCGAACAAAGCCCTATAGT 57.656 42.857 0.00 0.00 31.21 2.12
595 596 4.695217 TTTTGCGAACAAAGCCCTATAG 57.305 40.909 0.00 0.00 46.08 1.31
596 597 5.417580 AGAATTTTGCGAACAAAGCCCTATA 59.582 36.000 0.00 0.00 46.08 1.31
597 598 4.220602 AGAATTTTGCGAACAAAGCCCTAT 59.779 37.500 0.00 0.00 46.08 2.57
598 599 3.572255 AGAATTTTGCGAACAAAGCCCTA 59.428 39.130 0.00 0.00 46.08 3.53
599 600 2.365293 AGAATTTTGCGAACAAAGCCCT 59.635 40.909 0.00 0.00 46.08 5.19
600 601 2.754472 AGAATTTTGCGAACAAAGCCC 58.246 42.857 0.00 0.00 46.08 5.19
601 602 6.237201 CGTATAAGAATTTTGCGAACAAAGCC 60.237 38.462 0.00 0.00 46.08 4.35
602 603 6.521821 TCGTATAAGAATTTTGCGAACAAAGC 59.478 34.615 0.00 0.00 46.08 3.51
603 604 8.429739 TTCGTATAAGAATTTTGCGAACAAAG 57.570 30.769 0.00 0.00 45.17 2.77
604 605 7.060174 GCTTCGTATAAGAATTTTGCGAACAAA 59.940 33.333 1.42 0.00 45.17 2.83
605 606 6.521821 GCTTCGTATAAGAATTTTGCGAACAA 59.478 34.615 1.42 0.00 45.17 2.83
606 607 6.019152 GCTTCGTATAAGAATTTTGCGAACA 58.981 36.000 1.42 0.00 45.17 3.18
607 608 5.167279 CGCTTCGTATAAGAATTTTGCGAAC 59.833 40.000 20.21 4.15 45.17 3.95
608 609 5.163933 ACGCTTCGTATAAGAATTTTGCGAA 60.164 36.000 26.85 12.06 46.93 4.70
609 610 4.327898 ACGCTTCGTATAAGAATTTTGCGA 59.672 37.500 26.85 6.11 41.43 5.10
610 611 4.574759 ACGCTTCGTATAAGAATTTTGCG 58.425 39.130 21.94 21.94 42.65 4.85
611 612 6.848470 AAACGCTTCGTATAAGAATTTTGC 57.152 33.333 1.42 1.66 39.99 3.68
633 634 5.220970 CGCAGTCCTTTCTTAAGTGGAAAAA 60.221 40.000 13.28 2.35 33.17 1.94
634 635 4.274950 CGCAGTCCTTTCTTAAGTGGAAAA 59.725 41.667 13.28 2.65 33.17 2.29
635 636 3.813166 CGCAGTCCTTTCTTAAGTGGAAA 59.187 43.478 13.28 3.17 0.00 3.13
636 637 3.399330 CGCAGTCCTTTCTTAAGTGGAA 58.601 45.455 13.28 3.48 0.00 3.53
637 638 2.289444 CCGCAGTCCTTTCTTAAGTGGA 60.289 50.000 1.63 6.47 0.00 4.02
638 639 2.076863 CCGCAGTCCTTTCTTAAGTGG 58.923 52.381 1.63 4.23 0.00 4.00
639 640 2.076863 CCCGCAGTCCTTTCTTAAGTG 58.923 52.381 1.63 0.00 0.00 3.16
640 641 1.697982 ACCCGCAGTCCTTTCTTAAGT 59.302 47.619 1.63 0.00 0.00 2.24
641 642 2.474410 ACCCGCAGTCCTTTCTTAAG 57.526 50.000 0.00 0.00 0.00 1.85
642 643 2.105134 TCAACCCGCAGTCCTTTCTTAA 59.895 45.455 0.00 0.00 0.00 1.85
643 644 1.695242 TCAACCCGCAGTCCTTTCTTA 59.305 47.619 0.00 0.00 0.00 2.10
644 645 0.472471 TCAACCCGCAGTCCTTTCTT 59.528 50.000 0.00 0.00 0.00 2.52
645 646 0.472471 TTCAACCCGCAGTCCTTTCT 59.528 50.000 0.00 0.00 0.00 2.52
646 647 1.200020 CATTCAACCCGCAGTCCTTTC 59.800 52.381 0.00 0.00 0.00 2.62
647 648 1.202879 TCATTCAACCCGCAGTCCTTT 60.203 47.619 0.00 0.00 0.00 3.11
648 649 0.400213 TCATTCAACCCGCAGTCCTT 59.600 50.000 0.00 0.00 0.00 3.36
649 650 0.321653 GTCATTCAACCCGCAGTCCT 60.322 55.000 0.00 0.00 0.00 3.85
650 651 1.305930 GGTCATTCAACCCGCAGTCC 61.306 60.000 0.00 0.00 32.82 3.85
651 652 2.171635 GGTCATTCAACCCGCAGTC 58.828 57.895 0.00 0.00 32.82 3.51
652 653 4.397348 GGTCATTCAACCCGCAGT 57.603 55.556 0.00 0.00 32.82 4.40
658 659 3.934457 ATGTTTTCGGGTCATTCAACC 57.066 42.857 0.00 0.00 38.69 3.77
659 660 5.399013 CCTTATGTTTTCGGGTCATTCAAC 58.601 41.667 0.00 0.00 0.00 3.18
660 661 4.461081 CCCTTATGTTTTCGGGTCATTCAA 59.539 41.667 0.00 0.00 31.89 2.69
661 662 4.013728 CCCTTATGTTTTCGGGTCATTCA 58.986 43.478 0.00 0.00 31.89 2.57
662 663 3.181490 GCCCTTATGTTTTCGGGTCATTC 60.181 47.826 0.00 0.00 38.97 2.67
663 664 2.758423 GCCCTTATGTTTTCGGGTCATT 59.242 45.455 0.00 0.00 38.97 2.57
664 665 2.025321 AGCCCTTATGTTTTCGGGTCAT 60.025 45.455 0.00 0.00 38.97 3.06
665 666 1.353022 AGCCCTTATGTTTTCGGGTCA 59.647 47.619 0.00 0.00 38.97 4.02
666 667 2.124277 AGCCCTTATGTTTTCGGGTC 57.876 50.000 0.00 0.00 38.97 4.46
667 668 2.597578 AAGCCCTTATGTTTTCGGGT 57.402 45.000 0.00 0.00 38.97 5.28
668 669 3.509967 AGAAAAGCCCTTATGTTTTCGGG 59.490 43.478 0.00 0.00 42.48 5.14
669 670 4.485163 CAGAAAAGCCCTTATGTTTTCGG 58.515 43.478 0.00 0.00 42.48 4.30
670 671 3.920412 GCAGAAAAGCCCTTATGTTTTCG 59.080 43.478 0.00 0.00 42.48 3.46
671 672 4.881920 TGCAGAAAAGCCCTTATGTTTTC 58.118 39.130 0.00 0.00 39.46 2.29
672 673 4.953940 TGCAGAAAAGCCCTTATGTTTT 57.046 36.364 0.00 0.00 0.00 2.43
673 674 4.953940 TTGCAGAAAAGCCCTTATGTTT 57.046 36.364 0.00 0.00 0.00 2.83
674 675 4.953940 TTTGCAGAAAAGCCCTTATGTT 57.046 36.364 0.00 0.00 0.00 2.71
675 676 4.886579 CTTTTGCAGAAAAGCCCTTATGT 58.113 39.130 0.00 0.00 41.20 2.29
685 686 0.030101 CGCGGGACTTTTGCAGAAAA 59.970 50.000 0.00 0.00 0.00 2.29
686 687 0.816018 TCGCGGGACTTTTGCAGAAA 60.816 50.000 6.13 0.00 0.00 2.52
687 688 1.227704 TCGCGGGACTTTTGCAGAA 60.228 52.632 6.13 0.00 0.00 3.02
688 689 1.959226 GTCGCGGGACTTTTGCAGA 60.959 57.895 23.96 0.00 40.15 4.26
689 690 2.556287 GTCGCGGGACTTTTGCAG 59.444 61.111 23.96 0.00 40.15 4.41
690 691 3.342627 CGTCGCGGGACTTTTGCA 61.343 61.111 27.29 0.00 41.16 4.08
691 692 4.084888 CCGTCGCGGGACTTTTGC 62.085 66.667 27.29 3.38 44.15 3.68
707 708 2.338500 GTTGAGTCTGTCGGATTCACC 58.662 52.381 6.38 0.00 39.77 4.02
708 709 2.338500 GGTTGAGTCTGTCGGATTCAC 58.662 52.381 6.38 3.16 39.77 3.18
709 710 1.067846 CGGTTGAGTCTGTCGGATTCA 60.068 52.381 2.84 2.84 38.61 2.57
710 711 1.630148 CGGTTGAGTCTGTCGGATTC 58.370 55.000 0.00 0.00 0.00 2.52
711 712 0.246635 CCGGTTGAGTCTGTCGGATT 59.753 55.000 11.34 0.00 42.94 3.01
712 713 0.898789 ACCGGTTGAGTCTGTCGGAT 60.899 55.000 19.75 6.70 42.94 4.18
713 714 1.529948 ACCGGTTGAGTCTGTCGGA 60.530 57.895 19.75 0.00 42.94 4.55
714 715 1.372997 CACCGGTTGAGTCTGTCGG 60.373 63.158 2.97 14.01 45.42 4.79
715 716 2.022129 GCACCGGTTGAGTCTGTCG 61.022 63.158 2.97 0.00 0.00 4.35
716 717 0.249911 AAGCACCGGTTGAGTCTGTC 60.250 55.000 2.97 0.00 0.00 3.51
717 718 0.180406 AAAGCACCGGTTGAGTCTGT 59.820 50.000 2.97 0.00 0.00 3.41
718 719 2.163818 TAAAGCACCGGTTGAGTCTG 57.836 50.000 2.97 0.00 0.00 3.51
719 720 2.922740 TTAAAGCACCGGTTGAGTCT 57.077 45.000 2.97 0.00 0.00 3.24
720 721 5.813080 ATAATTAAAGCACCGGTTGAGTC 57.187 39.130 2.97 0.00 0.00 3.36
721 722 7.875327 ATAATAATTAAAGCACCGGTTGAGT 57.125 32.000 2.97 0.00 0.00 3.41
722 723 9.878599 CTTATAATAATTAAAGCACCGGTTGAG 57.121 33.333 2.97 0.00 0.00 3.02
723 724 8.842280 CCTTATAATAATTAAAGCACCGGTTGA 58.158 33.333 2.97 0.00 0.00 3.18
724 725 8.079809 CCCTTATAATAATTAAAGCACCGGTTG 58.920 37.037 2.97 1.23 0.00 3.77
725 726 8.000127 TCCCTTATAATAATTAAAGCACCGGTT 59.000 33.333 2.97 0.00 0.00 4.44
726 727 7.519927 TCCCTTATAATAATTAAAGCACCGGT 58.480 34.615 0.00 0.00 0.00 5.28
727 728 7.989416 TCCCTTATAATAATTAAAGCACCGG 57.011 36.000 0.00 0.00 0.00 5.28
744 745 9.847224 TTTAGATCGCTTTATCTTTTCCCTTAT 57.153 29.630 0.00 0.00 37.41 1.73
745 746 9.106070 GTTTAGATCGCTTTATCTTTTCCCTTA 57.894 33.333 0.00 0.00 37.41 2.69
746 747 7.610305 TGTTTAGATCGCTTTATCTTTTCCCTT 59.390 33.333 0.00 0.00 37.41 3.95
747 748 7.110155 TGTTTAGATCGCTTTATCTTTTCCCT 58.890 34.615 0.00 0.00 37.41 4.20
748 749 7.316544 TGTTTAGATCGCTTTATCTTTTCCC 57.683 36.000 0.00 0.00 37.41 3.97
871 874 2.478709 CGTCGAGATTGACTCTTGGAGG 60.479 54.545 0.00 0.00 42.92 4.30
904 1698 1.370587 CGGCGCCGGATTTAGGAAAA 61.371 55.000 40.50 0.00 35.56 2.29
974 1768 2.347490 CCTGAACACCGGTCAGGG 59.653 66.667 26.13 10.17 45.29 4.45
1243 2040 7.148804 GCGAGAAAATGGATTAAACTTTTGACC 60.149 37.037 0.00 0.00 0.00 4.02
1290 2087 2.086610 ACCAACCTGCAGTGGAAATT 57.913 45.000 25.74 4.65 0.00 1.82
1406 2206 0.110419 GAAAGCGCACGTGCATAACA 60.110 50.000 37.03 0.00 42.21 2.41
1472 2272 9.270640 TGTTTATATGCAATAAAAATGGATGCC 57.729 29.630 12.57 0.00 36.20 4.40
1719 2737 5.262804 ACGTAGAATTAAGAGTCCTCAGGT 58.737 41.667 0.00 0.00 0.00 4.00
1750 2768 9.551734 CTCAGGATTCAATAGTAATTGTCATCA 57.448 33.333 11.58 0.00 42.66 3.07
1773 2791 0.874390 GTGACAAAAGGATGCGCTCA 59.126 50.000 9.73 0.00 0.00 4.26
1778 2796 5.643777 AGTACATAGTGTGACAAAAGGATGC 59.356 40.000 0.00 0.00 0.00 3.91
2642 3666 5.391312 AGAATGGGCAGAAATGTAACAAC 57.609 39.130 0.00 0.00 0.00 3.32
2765 3804 5.822519 TCCTATGCACATTTCATACAGAACC 59.177 40.000 0.00 0.00 35.56 3.62
2788 3827 3.007635 CACGGGGATTACTGAAACCTTC 58.992 50.000 0.00 0.00 0.00 3.46
2824 3864 6.053005 TCCCGATAGTGATGAAATTGGTTAC 58.947 40.000 0.00 0.00 0.00 2.50
2858 3898 0.368907 GCGTACACATAGTTGCCACG 59.631 55.000 0.00 0.00 0.00 4.94
3033 4077 7.385778 AGTTTAGAGCAAAAACACAACACTA 57.614 32.000 10.10 0.00 38.92 2.74
3698 4742 9.884465 GAGTATTGGTTATATCTTCAAATGTGC 57.116 33.333 0.00 0.00 0.00 4.57
3815 4859 8.352201 CCTTCTTTTACAGATTGTGATGTGAAA 58.648 33.333 0.00 0.00 34.79 2.69
3817 4861 7.223584 TCCTTCTTTTACAGATTGTGATGTGA 58.776 34.615 0.00 0.00 31.36 3.58
3828 4872 7.020827 AGAATGGTGATCCTTCTTTTACAGA 57.979 36.000 0.00 0.00 31.86 3.41
3908 4952 5.482006 AGATACAAAAATCAAAAGGCCTGC 58.518 37.500 5.69 0.00 0.00 4.85
4026 5071 1.290955 GCATCAGCTTGCAGGCAAA 59.709 52.632 23.85 10.59 42.31 3.68
4027 5072 2.967397 GCATCAGCTTGCAGGCAA 59.033 55.556 23.85 10.97 42.31 4.52
4543 5604 3.191371 GCACCAATTCCAACTAAGAGGTG 59.809 47.826 0.00 0.00 46.00 4.00
4603 5664 6.601332 AGGTACCTTCATTTTCACTCTTCAA 58.399 36.000 9.21 0.00 0.00 2.69
4655 5716 2.158475 TGTCAGGAAAAATGCCTCAGGT 60.158 45.455 0.00 0.00 32.12 4.00
4743 5804 3.269381 ACCTCTAATTTCCATCCCAGCAA 59.731 43.478 0.00 0.00 0.00 3.91
4810 5871 2.225382 TACATTGTGGGACGGAGAGA 57.775 50.000 0.00 0.00 0.00 3.10
4811 5872 2.496070 TCTTACATTGTGGGACGGAGAG 59.504 50.000 0.00 0.00 0.00 3.20
4812 5873 2.232941 GTCTTACATTGTGGGACGGAGA 59.767 50.000 0.00 0.00 0.00 3.71
4813 5874 2.028476 TGTCTTACATTGTGGGACGGAG 60.028 50.000 14.61 0.00 0.00 4.63
4814 5875 1.972075 TGTCTTACATTGTGGGACGGA 59.028 47.619 14.61 1.98 0.00 4.69
4815 5876 2.465860 TGTCTTACATTGTGGGACGG 57.534 50.000 14.61 0.00 0.00 4.79
4859 5920 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
4860 5921 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
4861 5922 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
4862 5923 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
4863 5924 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
4865 5926 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
4866 5927 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
4867 5928 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
4868 5929 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
4869 5930 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
4870 5931 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
4871 5932 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
4872 5933 3.077695 AGATACTCCCTCCGTCCCATAAT 59.922 47.826 0.00 0.00 0.00 1.28
4873 5934 2.449730 AGATACTCCCTCCGTCCCATAA 59.550 50.000 0.00 0.00 0.00 1.90
4874 5935 2.071372 AGATACTCCCTCCGTCCCATA 58.929 52.381 0.00 0.00 0.00 2.74
4875 5936 0.861155 AGATACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
4876 5937 0.635009 AAGATACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
4877 5938 1.041437 CAAGATACTCCCTCCGTCCC 58.959 60.000 0.00 0.00 0.00 4.46
4878 5939 0.389757 GCAAGATACTCCCTCCGTCC 59.610 60.000 0.00 0.00 0.00 4.79
4879 5940 1.404843 AGCAAGATACTCCCTCCGTC 58.595 55.000 0.00 0.00 0.00 4.79
4880 5941 2.750141 TAGCAAGATACTCCCTCCGT 57.250 50.000 0.00 0.00 0.00 4.69
4881 5942 3.574396 TCAATAGCAAGATACTCCCTCCG 59.426 47.826 0.00 0.00 0.00 4.63
4882 5943 5.753721 ATCAATAGCAAGATACTCCCTCC 57.246 43.478 0.00 0.00 0.00 4.30
4883 5944 7.671302 TGTTATCAATAGCAAGATACTCCCTC 58.329 38.462 0.00 0.00 0.00 4.30
4884 5945 7.618019 TGTTATCAATAGCAAGATACTCCCT 57.382 36.000 0.00 0.00 0.00 4.20
4885 5946 8.854614 AATGTTATCAATAGCAAGATACTCCC 57.145 34.615 0.00 0.00 0.00 4.30
5456 6519 3.444742 CAGCATTACCATTTGCTTCAGGA 59.555 43.478 0.00 0.00 46.71 3.86
5604 6821 0.532862 GGACACCACACTGACACTGG 60.533 60.000 0.00 0.00 0.00 4.00
5672 6890 9.430399 ACCTTCTGATCAATATGGAAATGAATT 57.570 29.630 13.63 0.00 0.00 2.17
5894 7203 2.057922 ACTTCTGGGCTTCTTCCTTCA 58.942 47.619 0.00 0.00 0.00 3.02
6454 7764 4.408182 ACTGCATAACCATGTAGAGGTC 57.592 45.455 9.30 0.00 44.99 3.85
6461 7771 7.285566 AGATTTGAGATACTGCATAACCATGT 58.714 34.615 0.00 0.00 34.40 3.21
6777 8087 4.720090 CAGACAGTGTCAGCATCATTTTC 58.280 43.478 24.73 0.00 34.60 2.29
6902 8212 3.222173 ACTTGCCTGTTCCACAATGTA 57.778 42.857 0.00 0.00 0.00 2.29
7195 8511 2.555757 AGCCTCAAGAGTTGATGTTTGC 59.444 45.455 0.00 0.00 39.30 3.68
7370 8686 3.586470 TGACATAAACACAACTGGGGT 57.414 42.857 0.00 0.00 0.00 4.95
7439 8755 6.283694 TGTCAGACAAATGGATGTATCTAGC 58.716 40.000 0.00 0.00 32.57 3.42
7456 8772 3.000727 CGACCCCAAATACTTGTCAGAC 58.999 50.000 0.00 0.00 0.00 3.51
7458 8774 2.027561 TCCGACCCCAAATACTTGTCAG 60.028 50.000 0.00 0.00 0.00 3.51
7471 8787 4.862823 CTCCCTCCCTCCGACCCC 62.863 77.778 0.00 0.00 0.00 4.95
7475 8791 0.772384 GAGATACTCCCTCCCTCCGA 59.228 60.000 0.00 0.00 0.00 4.55
7477 8793 0.896479 GCGAGATACTCCCTCCCTCC 60.896 65.000 0.00 0.00 0.00 4.30
7478 8794 0.178987 TGCGAGATACTCCCTCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
7479 8795 0.485099 ATGCGAGATACTCCCTCCCT 59.515 55.000 0.00 0.00 0.00 4.20
7480 8796 2.217510 TATGCGAGATACTCCCTCCC 57.782 55.000 0.00 0.00 0.00 4.30
7606 9017 4.228912 AGAAAACACGCCTTTCATTCTG 57.771 40.909 7.08 0.00 35.62 3.02
7707 9383 3.702045 TGTTCCCGAAAAATCACCAAACT 59.298 39.130 0.00 0.00 0.00 2.66
7722 9398 6.256975 TGATGTACTTTCGAAATATGTTCCCG 59.743 38.462 11.70 0.00 0.00 5.14
7832 9565 3.691498 CGGCAGGTCGGAAATATTTTTC 58.309 45.455 1.43 0.40 40.48 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.