Multiple sequence alignment - TraesCS7D01G301100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G301100 chr7D 100.000 2255 0 0 1 2255 382000859 381998605 0 4165
1 TraesCS7D01G301100 chr7D 99.321 1619 8 2 639 2255 626680417 626678800 0 2926
2 TraesCS7D01G301100 chrUn 99.629 1617 6 0 639 2255 189409905 189411521 0 2953
3 TraesCS7D01G301100 chrUn 99.433 1235 7 0 639 1873 251406691 251405457 0 2242
4 TraesCS7D01G301100 chrUn 99.402 1004 6 0 1252 2255 86477659 86476656 0 1821
5 TraesCS7D01G301100 chrUn 99.589 973 4 0 735 1707 455388063 455389035 0 1775
6 TraesCS7D01G301100 chr6D 99.443 1617 9 0 639 2255 124534941 124536557 0 2937
7 TraesCS7D01G301100 chr6D 99.602 1004 4 0 1252 2255 458963670 458962667 0 1832
8 TraesCS7D01G301100 chr1A 99.701 1004 3 0 1252 2255 22566051 22565048 0 1838
9 TraesCS7D01G301100 chr1A 99.458 554 3 0 1 554 238145766 238145213 0 1007
10 TraesCS7D01G301100 chr1A 99.278 554 4 0 1 554 334070047 334069494 0 1002
11 TraesCS7D01G301100 chr1A 99.278 554 3 1 1 554 238143142 238142590 0 1000
12 TraesCS7D01G301100 chr7B 99.203 1004 8 0 1252 2255 743004783 743003780 0 1810
13 TraesCS7D01G301100 chr7A 99.203 1004 8 0 1252 2255 60243430 60244433 0 1810
14 TraesCS7D01G301100 chr7A 99.458 554 3 0 1 554 60319806 60319253 0 1007
15 TraesCS7D01G301100 chr3A 99.516 620 3 0 639 1258 633110076 633110695 0 1129
16 TraesCS7D01G301100 chr1B 99.516 620 3 0 639 1258 672477983 672478602 0 1129
17 TraesCS7D01G301100 chr2B 99.516 620 2 1 639 1258 799246794 799247412 0 1127
18 TraesCS7D01G301100 chr1D 99.516 620 2 1 639 1258 141314313 141313695 0 1127
19 TraesCS7D01G301100 chr2D 99.639 554 2 0 1 554 637324942 637324389 0 1013
20 TraesCS7D01G301100 chr2D 99.458 554 3 0 1 554 635047716 635048269 0 1007
21 TraesCS7D01G301100 chr5A 99.458 554 3 0 1 554 16559913 16560466 0 1007
22 TraesCS7D01G301100 chr6B 99.278 554 4 0 1 554 596647946 596647393 0 1002
23 TraesCS7D01G301100 chr4D 99.278 554 4 0 1 554 123378285 123378838 0 1002


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G301100 chr7D 381998605 382000859 2254 True 4165.0 4165 100.000 1 2255 1 chr7D.!!$R1 2254
1 TraesCS7D01G301100 chr7D 626678800 626680417 1617 True 2926.0 2926 99.321 639 2255 1 chr7D.!!$R2 1616
2 TraesCS7D01G301100 chrUn 189409905 189411521 1616 False 2953.0 2953 99.629 639 2255 1 chrUn.!!$F1 1616
3 TraesCS7D01G301100 chrUn 251405457 251406691 1234 True 2242.0 2242 99.433 639 1873 1 chrUn.!!$R2 1234
4 TraesCS7D01G301100 chrUn 86476656 86477659 1003 True 1821.0 1821 99.402 1252 2255 1 chrUn.!!$R1 1003
5 TraesCS7D01G301100 chrUn 455388063 455389035 972 False 1775.0 1775 99.589 735 1707 1 chrUn.!!$F2 972
6 TraesCS7D01G301100 chr6D 124534941 124536557 1616 False 2937.0 2937 99.443 639 2255 1 chr6D.!!$F1 1616
7 TraesCS7D01G301100 chr6D 458962667 458963670 1003 True 1832.0 1832 99.602 1252 2255 1 chr6D.!!$R1 1003
8 TraesCS7D01G301100 chr1A 22565048 22566051 1003 True 1838.0 1838 99.701 1252 2255 1 chr1A.!!$R1 1003
9 TraesCS7D01G301100 chr1A 238142590 238145766 3176 True 1003.5 1007 99.368 1 554 2 chr1A.!!$R3 553
10 TraesCS7D01G301100 chr1A 334069494 334070047 553 True 1002.0 1002 99.278 1 554 1 chr1A.!!$R2 553
11 TraesCS7D01G301100 chr7B 743003780 743004783 1003 True 1810.0 1810 99.203 1252 2255 1 chr7B.!!$R1 1003
12 TraesCS7D01G301100 chr7A 60243430 60244433 1003 False 1810.0 1810 99.203 1252 2255 1 chr7A.!!$F1 1003
13 TraesCS7D01G301100 chr7A 60319253 60319806 553 True 1007.0 1007 99.458 1 554 1 chr7A.!!$R1 553
14 TraesCS7D01G301100 chr3A 633110076 633110695 619 False 1129.0 1129 99.516 639 1258 1 chr3A.!!$F1 619
15 TraesCS7D01G301100 chr1B 672477983 672478602 619 False 1129.0 1129 99.516 639 1258 1 chr1B.!!$F1 619
16 TraesCS7D01G301100 chr2B 799246794 799247412 618 False 1127.0 1127 99.516 639 1258 1 chr2B.!!$F1 619
17 TraesCS7D01G301100 chr1D 141313695 141314313 618 True 1127.0 1127 99.516 639 1258 1 chr1D.!!$R1 619
18 TraesCS7D01G301100 chr2D 637324389 637324942 553 True 1013.0 1013 99.639 1 554 1 chr2D.!!$R1 553
19 TraesCS7D01G301100 chr2D 635047716 635048269 553 False 1007.0 1007 99.458 1 554 1 chr2D.!!$F1 553
20 TraesCS7D01G301100 chr5A 16559913 16560466 553 False 1007.0 1007 99.458 1 554 1 chr5A.!!$F1 553
21 TraesCS7D01G301100 chr6B 596647393 596647946 553 True 1002.0 1002 99.278 1 554 1 chr6B.!!$R1 553
22 TraesCS7D01G301100 chr4D 123378285 123378838 553 False 1002.0 1002 99.278 1 554 1 chr4D.!!$F1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
581 582 1.956477 AGGCAATTGACGTTCAAAGCT 59.044 42.857 10.34 0.0 40.12 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 3731 0.824109 CGGAAGGGACAGCAGATACA 59.176 55.0 0.0 0.0 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
436 437 5.126061 GGCCAGAACAATGAGTATTTGTCAT 59.874 40.000 0.00 0.00 36.14 3.06
557 558 7.835634 GCTATGGGCTACTATCTTTATGAAC 57.164 40.000 0.00 0.00 38.06 3.18
558 559 6.819146 GCTATGGGCTACTATCTTTATGAACC 59.181 42.308 0.00 0.00 38.06 3.62
559 560 6.763715 ATGGGCTACTATCTTTATGAACCA 57.236 37.500 0.00 0.00 0.00 3.67
560 561 6.763715 TGGGCTACTATCTTTATGAACCAT 57.236 37.500 0.00 0.00 0.00 3.55
561 562 7.865530 TGGGCTACTATCTTTATGAACCATA 57.134 36.000 0.00 0.00 0.00 2.74
562 563 7.907389 TGGGCTACTATCTTTATGAACCATAG 58.093 38.462 0.00 0.00 0.00 2.23
563 564 7.038302 TGGGCTACTATCTTTATGAACCATAGG 60.038 40.741 0.00 0.00 0.00 2.57
564 565 6.819146 GGCTACTATCTTTATGAACCATAGGC 59.181 42.308 0.00 0.00 0.00 3.93
565 566 7.386851 GCTACTATCTTTATGAACCATAGGCA 58.613 38.462 0.00 0.00 0.00 4.75
566 567 7.878127 GCTACTATCTTTATGAACCATAGGCAA 59.122 37.037 0.00 0.00 0.00 4.52
567 568 9.950496 CTACTATCTTTATGAACCATAGGCAAT 57.050 33.333 0.00 0.00 0.00 3.56
569 570 9.071276 ACTATCTTTATGAACCATAGGCAATTG 57.929 33.333 0.00 0.00 0.00 2.32
570 571 9.288576 CTATCTTTATGAACCATAGGCAATTGA 57.711 33.333 10.34 0.00 0.00 2.57
571 572 7.333528 TCTTTATGAACCATAGGCAATTGAC 57.666 36.000 10.34 6.35 0.00 3.18
572 573 5.749596 TTATGAACCATAGGCAATTGACG 57.250 39.130 10.34 0.00 0.00 4.35
573 574 3.066291 TGAACCATAGGCAATTGACGT 57.934 42.857 10.34 5.06 0.00 4.34
574 575 3.417101 TGAACCATAGGCAATTGACGTT 58.583 40.909 10.34 5.77 0.00 3.99
575 576 3.438781 TGAACCATAGGCAATTGACGTTC 59.561 43.478 17.89 17.89 0.00 3.95
576 577 3.066291 ACCATAGGCAATTGACGTTCA 57.934 42.857 10.34 0.00 0.00 3.18
577 578 3.417101 ACCATAGGCAATTGACGTTCAA 58.583 40.909 10.34 0.00 41.09 2.69
578 579 3.823873 ACCATAGGCAATTGACGTTCAAA 59.176 39.130 10.34 0.00 40.12 2.69
579 580 4.082787 ACCATAGGCAATTGACGTTCAAAG 60.083 41.667 10.34 0.00 40.12 2.77
580 581 2.422276 AGGCAATTGACGTTCAAAGC 57.578 45.000 10.34 14.26 40.12 3.51
581 582 1.956477 AGGCAATTGACGTTCAAAGCT 59.044 42.857 10.34 0.00 40.12 3.74
582 583 2.030805 AGGCAATTGACGTTCAAAGCTC 60.031 45.455 10.34 12.81 40.12 4.09
583 584 2.030805 GGCAATTGACGTTCAAAGCTCT 60.031 45.455 10.34 0.00 40.12 4.09
584 585 3.229552 GCAATTGACGTTCAAAGCTCTC 58.770 45.455 10.34 0.00 40.12 3.20
585 586 3.058639 GCAATTGACGTTCAAAGCTCTCT 60.059 43.478 10.34 0.00 40.12 3.10
586 587 4.706527 CAATTGACGTTCAAAGCTCTCTC 58.293 43.478 0.00 0.00 40.12 3.20
587 588 3.735237 TTGACGTTCAAAGCTCTCTCT 57.265 42.857 0.00 0.00 32.71 3.10
588 589 3.290308 TGACGTTCAAAGCTCTCTCTC 57.710 47.619 0.00 0.00 0.00 3.20
589 590 2.029828 TGACGTTCAAAGCTCTCTCTCC 60.030 50.000 0.00 0.00 0.00 3.71
590 591 1.964223 ACGTTCAAAGCTCTCTCTCCA 59.036 47.619 0.00 0.00 0.00 3.86
591 592 2.564947 ACGTTCAAAGCTCTCTCTCCAT 59.435 45.455 0.00 0.00 0.00 3.41
592 593 3.007398 ACGTTCAAAGCTCTCTCTCCATT 59.993 43.478 0.00 0.00 0.00 3.16
593 594 3.370366 CGTTCAAAGCTCTCTCTCCATTG 59.630 47.826 0.00 0.00 0.00 2.82
594 595 4.573900 GTTCAAAGCTCTCTCTCCATTGA 58.426 43.478 0.00 0.00 0.00 2.57
595 596 5.184711 GTTCAAAGCTCTCTCTCCATTGAT 58.815 41.667 0.00 0.00 0.00 2.57
596 597 5.432680 TCAAAGCTCTCTCTCCATTGATT 57.567 39.130 0.00 0.00 0.00 2.57
597 598 5.813383 TCAAAGCTCTCTCTCCATTGATTT 58.187 37.500 0.00 0.00 0.00 2.17
598 599 5.879223 TCAAAGCTCTCTCTCCATTGATTTC 59.121 40.000 0.00 0.00 0.00 2.17
599 600 5.697082 AAGCTCTCTCTCCATTGATTTCT 57.303 39.130 0.00 0.00 0.00 2.52
600 601 5.697082 AGCTCTCTCTCCATTGATTTCTT 57.303 39.130 0.00 0.00 0.00 2.52
601 602 5.673514 AGCTCTCTCTCCATTGATTTCTTC 58.326 41.667 0.00 0.00 0.00 2.87
602 603 4.507388 GCTCTCTCTCCATTGATTTCTTCG 59.493 45.833 0.00 0.00 0.00 3.79
603 604 4.437239 TCTCTCTCCATTGATTTCTTCGC 58.563 43.478 0.00 0.00 0.00 4.70
604 605 3.535561 TCTCTCCATTGATTTCTTCGCC 58.464 45.455 0.00 0.00 0.00 5.54
605 606 2.615912 CTCTCCATTGATTTCTTCGCCC 59.384 50.000 0.00 0.00 0.00 6.13
606 607 2.239654 TCTCCATTGATTTCTTCGCCCT 59.760 45.455 0.00 0.00 0.00 5.19
607 608 3.454447 TCTCCATTGATTTCTTCGCCCTA 59.546 43.478 0.00 0.00 0.00 3.53
608 609 4.103153 TCTCCATTGATTTCTTCGCCCTAT 59.897 41.667 0.00 0.00 0.00 2.57
609 610 5.306937 TCTCCATTGATTTCTTCGCCCTATA 59.693 40.000 0.00 0.00 0.00 1.31
610 611 6.013379 TCTCCATTGATTTCTTCGCCCTATAT 60.013 38.462 0.00 0.00 0.00 0.86
611 612 6.173339 TCCATTGATTTCTTCGCCCTATATC 58.827 40.000 0.00 0.00 0.00 1.63
612 613 6.013379 TCCATTGATTTCTTCGCCCTATATCT 60.013 38.462 0.00 0.00 0.00 1.98
613 614 7.180229 TCCATTGATTTCTTCGCCCTATATCTA 59.820 37.037 0.00 0.00 0.00 1.98
614 615 7.989741 CCATTGATTTCTTCGCCCTATATCTAT 59.010 37.037 0.00 0.00 0.00 1.98
615 616 9.039870 CATTGATTTCTTCGCCCTATATCTATC 57.960 37.037 0.00 0.00 0.00 2.08
616 617 7.718334 TGATTTCTTCGCCCTATATCTATCA 57.282 36.000 0.00 0.00 0.00 2.15
617 618 8.134202 TGATTTCTTCGCCCTATATCTATCAA 57.866 34.615 0.00 0.00 0.00 2.57
618 619 8.762645 TGATTTCTTCGCCCTATATCTATCAAT 58.237 33.333 0.00 0.00 0.00 2.57
619 620 8.954950 ATTTCTTCGCCCTATATCTATCAATG 57.045 34.615 0.00 0.00 0.00 2.82
620 621 7.718334 TTCTTCGCCCTATATCTATCAATGA 57.282 36.000 0.00 0.00 0.00 2.57
621 622 7.904558 TCTTCGCCCTATATCTATCAATGAT 57.095 36.000 0.00 0.00 0.00 2.45
622 623 8.311395 TCTTCGCCCTATATCTATCAATGATT 57.689 34.615 0.00 0.00 0.00 2.57
623 624 8.417106 TCTTCGCCCTATATCTATCAATGATTC 58.583 37.037 0.00 0.00 0.00 2.52
624 625 7.055667 TCGCCCTATATCTATCAATGATTCC 57.944 40.000 0.00 0.00 0.00 3.01
625 626 6.841229 TCGCCCTATATCTATCAATGATTCCT 59.159 38.462 0.00 0.00 0.00 3.36
626 627 6.927936 CGCCCTATATCTATCAATGATTCCTG 59.072 42.308 0.00 0.00 0.00 3.86
627 628 6.709846 GCCCTATATCTATCAATGATTCCTGC 59.290 42.308 0.00 0.00 0.00 4.85
628 629 7.419981 GCCCTATATCTATCAATGATTCCTGCT 60.420 40.741 0.00 0.00 0.00 4.24
629 630 9.152327 CCCTATATCTATCAATGATTCCTGCTA 57.848 37.037 0.00 0.00 0.00 3.49
630 631 9.979578 CCTATATCTATCAATGATTCCTGCTAC 57.020 37.037 0.00 0.00 0.00 3.58
2098 3731 3.235200 CCTTTCCGGATCCAGTCTATCT 58.765 50.000 13.41 0.00 33.16 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
554 555 3.438781 TGAACGTCAATTGCCTATGGTTC 59.561 43.478 0.00 8.01 34.62 3.62
555 556 3.417101 TGAACGTCAATTGCCTATGGTT 58.583 40.909 0.00 0.00 0.00 3.67
556 557 3.066291 TGAACGTCAATTGCCTATGGT 57.934 42.857 0.00 0.00 0.00 3.55
557 558 4.414852 CTTTGAACGTCAATTGCCTATGG 58.585 43.478 0.00 0.00 36.11 2.74
558 559 3.853671 GCTTTGAACGTCAATTGCCTATG 59.146 43.478 0.00 0.00 36.11 2.23
559 560 3.758554 AGCTTTGAACGTCAATTGCCTAT 59.241 39.130 0.00 0.00 36.11 2.57
560 561 3.146066 AGCTTTGAACGTCAATTGCCTA 58.854 40.909 0.00 0.00 36.11 3.93
561 562 1.956477 AGCTTTGAACGTCAATTGCCT 59.044 42.857 0.00 0.00 36.11 4.75
562 563 2.030805 AGAGCTTTGAACGTCAATTGCC 60.031 45.455 0.00 0.00 36.11 4.52
563 564 3.058639 AGAGAGCTTTGAACGTCAATTGC 60.059 43.478 0.00 3.72 36.11 3.56
564 565 4.450419 AGAGAGAGCTTTGAACGTCAATTG 59.550 41.667 0.00 0.00 36.11 2.32
565 566 4.636249 AGAGAGAGCTTTGAACGTCAATT 58.364 39.130 0.00 0.00 36.11 2.32
566 567 4.241681 GAGAGAGAGCTTTGAACGTCAAT 58.758 43.478 0.00 0.00 36.11 2.57
567 568 3.553096 GGAGAGAGAGCTTTGAACGTCAA 60.553 47.826 0.00 0.00 34.03 3.18
568 569 2.029828 GGAGAGAGAGCTTTGAACGTCA 60.030 50.000 0.00 0.00 0.00 4.35
569 570 2.029828 TGGAGAGAGAGCTTTGAACGTC 60.030 50.000 0.00 0.00 0.00 4.34
570 571 1.964223 TGGAGAGAGAGCTTTGAACGT 59.036 47.619 0.00 0.00 0.00 3.99
571 572 2.732412 TGGAGAGAGAGCTTTGAACG 57.268 50.000 0.00 0.00 0.00 3.95
572 573 4.573900 TCAATGGAGAGAGAGCTTTGAAC 58.426 43.478 0.00 0.00 0.00 3.18
573 574 4.897509 TCAATGGAGAGAGAGCTTTGAA 57.102 40.909 0.00 0.00 0.00 2.69
574 575 5.432680 AATCAATGGAGAGAGAGCTTTGA 57.567 39.130 0.00 0.00 0.00 2.69
575 576 5.881443 AGAAATCAATGGAGAGAGAGCTTTG 59.119 40.000 0.00 0.00 0.00 2.77
576 577 6.064735 AGAAATCAATGGAGAGAGAGCTTT 57.935 37.500 0.00 0.00 0.00 3.51
577 578 5.697082 AGAAATCAATGGAGAGAGAGCTT 57.303 39.130 0.00 0.00 0.00 3.74
578 579 5.673514 GAAGAAATCAATGGAGAGAGAGCT 58.326 41.667 0.00 0.00 0.00 4.09
579 580 4.507388 CGAAGAAATCAATGGAGAGAGAGC 59.493 45.833 0.00 0.00 0.00 4.09
580 581 4.507388 GCGAAGAAATCAATGGAGAGAGAG 59.493 45.833 0.00 0.00 0.00 3.20
581 582 4.437239 GCGAAGAAATCAATGGAGAGAGA 58.563 43.478 0.00 0.00 0.00 3.10
582 583 3.559242 GGCGAAGAAATCAATGGAGAGAG 59.441 47.826 0.00 0.00 0.00 3.20
583 584 3.535561 GGCGAAGAAATCAATGGAGAGA 58.464 45.455 0.00 0.00 0.00 3.10
584 585 2.615912 GGGCGAAGAAATCAATGGAGAG 59.384 50.000 0.00 0.00 0.00 3.20
585 586 2.239654 AGGGCGAAGAAATCAATGGAGA 59.760 45.455 0.00 0.00 0.00 3.71
586 587 2.648059 AGGGCGAAGAAATCAATGGAG 58.352 47.619 0.00 0.00 0.00 3.86
587 588 2.806945 AGGGCGAAGAAATCAATGGA 57.193 45.000 0.00 0.00 0.00 3.41
588 589 6.176183 AGATATAGGGCGAAGAAATCAATGG 58.824 40.000 0.00 0.00 0.00 3.16
589 590 8.954950 ATAGATATAGGGCGAAGAAATCAATG 57.045 34.615 0.00 0.00 0.00 2.82
590 591 8.762645 TGATAGATATAGGGCGAAGAAATCAAT 58.237 33.333 0.00 0.00 0.00 2.57
591 592 8.134202 TGATAGATATAGGGCGAAGAAATCAA 57.866 34.615 0.00 0.00 0.00 2.57
592 593 7.718334 TGATAGATATAGGGCGAAGAAATCA 57.282 36.000 0.00 0.00 0.00 2.57
593 594 9.039870 CATTGATAGATATAGGGCGAAGAAATC 57.960 37.037 0.00 0.00 0.00 2.17
594 595 8.762645 TCATTGATAGATATAGGGCGAAGAAAT 58.237 33.333 0.00 0.00 0.00 2.17
595 596 8.134202 TCATTGATAGATATAGGGCGAAGAAA 57.866 34.615 0.00 0.00 0.00 2.52
596 597 7.718334 TCATTGATAGATATAGGGCGAAGAA 57.282 36.000 0.00 0.00 0.00 2.52
597 598 7.904558 ATCATTGATAGATATAGGGCGAAGA 57.095 36.000 0.00 0.00 0.00 2.87
598 599 7.655328 GGAATCATTGATAGATATAGGGCGAAG 59.345 40.741 0.00 0.00 0.00 3.79
599 600 7.345653 AGGAATCATTGATAGATATAGGGCGAA 59.654 37.037 0.00 0.00 0.00 4.70
600 601 6.841229 AGGAATCATTGATAGATATAGGGCGA 59.159 38.462 0.00 0.00 0.00 5.54
601 602 6.927936 CAGGAATCATTGATAGATATAGGGCG 59.072 42.308 0.00 0.00 0.00 6.13
602 603 6.709846 GCAGGAATCATTGATAGATATAGGGC 59.290 42.308 0.00 0.00 0.00 5.19
603 604 8.032045 AGCAGGAATCATTGATAGATATAGGG 57.968 38.462 0.00 0.00 0.00 3.53
604 605 9.979578 GTAGCAGGAATCATTGATAGATATAGG 57.020 37.037 0.00 0.00 0.00 2.57
618 619 8.585881 GGACTACAATTATAGTAGCAGGAATCA 58.414 37.037 0.00 0.00 42.04 2.57
619 620 8.808092 AGGACTACAATTATAGTAGCAGGAATC 58.192 37.037 0.00 0.00 42.04 2.52
620 621 8.728596 AGGACTACAATTATAGTAGCAGGAAT 57.271 34.615 0.00 0.00 42.04 3.01
621 622 9.824216 ATAGGACTACAATTATAGTAGCAGGAA 57.176 33.333 0.00 0.00 42.04 3.36
622 623 9.463902 GATAGGACTACAATTATAGTAGCAGGA 57.536 37.037 0.00 0.00 42.04 3.86
623 624 9.244292 TGATAGGACTACAATTATAGTAGCAGG 57.756 37.037 0.00 0.00 42.04 4.85
632 633 9.726438 GCCAACTAATGATAGGACTACAATTAT 57.274 33.333 0.00 0.00 33.15 1.28
633 634 8.154856 GGCCAACTAATGATAGGACTACAATTA 58.845 37.037 0.00 0.00 33.15 1.40
634 635 6.998673 GGCCAACTAATGATAGGACTACAATT 59.001 38.462 0.00 0.00 33.15 2.32
635 636 6.101150 TGGCCAACTAATGATAGGACTACAAT 59.899 38.462 0.61 0.00 33.15 2.71
636 637 5.427157 TGGCCAACTAATGATAGGACTACAA 59.573 40.000 0.61 0.00 33.15 2.41
637 638 4.966168 TGGCCAACTAATGATAGGACTACA 59.034 41.667 0.61 0.00 33.15 2.74
1110 2621 7.556733 ACAAAAACAAGGTATAACAGTCGAA 57.443 32.000 0.00 0.00 0.00 3.71
1178 2809 6.403333 AAGAAAAAGGAACGCAAAAGTTTC 57.597 33.333 0.00 0.00 34.00 2.78
2098 3731 0.824109 CGGAAGGGACAGCAGATACA 59.176 55.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.