Multiple sequence alignment - TraesCS7D01G300300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G300300 chr7D 100.000 4118 0 0 1 4118 380994639 380990522 0.000000e+00 7605
1 TraesCS7D01G300300 chr7D 98.031 914 18 0 3205 4118 379048585 379047672 0.000000e+00 1589
2 TraesCS7D01G300300 chr7D 98.031 914 18 0 3205 4118 619873249 619872336 0.000000e+00 1589
3 TraesCS7D01G300300 chr7A 91.277 2224 100 34 326 2511 429043911 429041744 0.000000e+00 2946
4 TraesCS7D01G300300 chr7A 93.804 581 36 0 2624 3204 429041066 429040486 0.000000e+00 874
5 TraesCS7D01G300300 chr7A 91.489 94 7 1 2510 2602 429041422 429041329 1.200000e-25 128
6 TraesCS7D01G300300 chr5D 98.249 914 16 0 3205 4118 464502534 464503447 0.000000e+00 1600
7 TraesCS7D01G300300 chr5D 98.031 914 18 0 3205 4118 435607340 435608253 0.000000e+00 1589
8 TraesCS7D01G300300 chr4D 98.140 914 17 0 3205 4118 416335091 416334178 0.000000e+00 1594
9 TraesCS7D01G300300 chr3D 98.138 913 16 1 3205 4117 338788200 338787289 0.000000e+00 1591
10 TraesCS7D01G300300 chr3D 98.031 914 18 0 3205 4118 455996444 455997357 0.000000e+00 1589
11 TraesCS7D01G300300 chr3D 98.031 914 18 0 3205 4118 462209976 462209063 0.000000e+00 1589
12 TraesCS7D01G300300 chr3D 85.660 530 56 9 1028 1547 39588911 39589430 1.300000e-149 540
13 TraesCS7D01G300300 chr2D 98.031 914 18 0 3205 4118 277902062 277902975 0.000000e+00 1589
14 TraesCS7D01G300300 chr7B 90.704 1065 38 15 574 1622 375396180 375395161 0.000000e+00 1362
15 TraesCS7D01G300300 chr7B 91.867 873 29 13 1621 2455 375395088 375394220 0.000000e+00 1181
16 TraesCS7D01G300300 chr7B 93.638 723 31 4 2488 3202 375394222 375393507 0.000000e+00 1066
17 TraesCS7D01G300300 chr7B 93.949 314 14 3 1 309 375397121 375396808 1.730000e-128 470
18 TraesCS7D01G300300 chr7B 94.175 206 8 3 355 556 375396180 375396385 1.110000e-80 311
19 TraesCS7D01G300300 chr3A 86.220 537 52 10 1028 1547 51381632 51382163 2.780000e-156 562
20 TraesCS7D01G300300 chr3A 87.892 446 54 0 2675 3120 51383195 51383640 3.650000e-145 525
21 TraesCS7D01G300300 chr3B 89.485 447 35 2 1028 1465 63387576 63388019 4.650000e-154 555


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G300300 chr7D 380990522 380994639 4117 True 7605.00 7605 100.0000 1 4118 1 chr7D.!!$R2 4117
1 TraesCS7D01G300300 chr7D 379047672 379048585 913 True 1589.00 1589 98.0310 3205 4118 1 chr7D.!!$R1 913
2 TraesCS7D01G300300 chr7D 619872336 619873249 913 True 1589.00 1589 98.0310 3205 4118 1 chr7D.!!$R3 913
3 TraesCS7D01G300300 chr7A 429040486 429043911 3425 True 1316.00 2946 92.1900 326 3204 3 chr7A.!!$R1 2878
4 TraesCS7D01G300300 chr5D 464502534 464503447 913 False 1600.00 1600 98.2490 3205 4118 1 chr5D.!!$F2 913
5 TraesCS7D01G300300 chr5D 435607340 435608253 913 False 1589.00 1589 98.0310 3205 4118 1 chr5D.!!$F1 913
6 TraesCS7D01G300300 chr4D 416334178 416335091 913 True 1594.00 1594 98.1400 3205 4118 1 chr4D.!!$R1 913
7 TraesCS7D01G300300 chr3D 338787289 338788200 911 True 1591.00 1591 98.1380 3205 4117 1 chr3D.!!$R1 912
8 TraesCS7D01G300300 chr3D 455996444 455997357 913 False 1589.00 1589 98.0310 3205 4118 1 chr3D.!!$F2 913
9 TraesCS7D01G300300 chr3D 462209063 462209976 913 True 1589.00 1589 98.0310 3205 4118 1 chr3D.!!$R2 913
10 TraesCS7D01G300300 chr3D 39588911 39589430 519 False 540.00 540 85.6600 1028 1547 1 chr3D.!!$F1 519
11 TraesCS7D01G300300 chr2D 277902062 277902975 913 False 1589.00 1589 98.0310 3205 4118 1 chr2D.!!$F1 913
12 TraesCS7D01G300300 chr7B 375393507 375397121 3614 True 1019.75 1362 92.5395 1 3202 4 chr7B.!!$R1 3201
13 TraesCS7D01G300300 chr3A 51381632 51383640 2008 False 543.50 562 87.0560 1028 3120 2 chr3A.!!$F1 2092

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
722 1246 0.038343 GTCCACGTACGCCTTGGTAA 60.038 55.0 16.72 0.0 0.00 2.85 F
1477 2048 0.035439 CAGGTACGCCCACCATTTCT 60.035 55.0 4.32 0.0 41.40 2.52 F
2297 3067 0.317160 TCGTCATCGTCAACTTGCCT 59.683 50.0 0.00 0.0 38.33 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1914 2581 0.023858 GTTCTAGAAGAAAGCGCGCG 59.976 55.000 28.44 28.44 35.75 6.86 R
2455 3295 0.179051 TCATATGCGATGCACAGCCA 60.179 50.000 12.01 1.73 43.04 4.75 R
4027 5657 2.431942 CGTTAAGCGTGCGGACCT 60.432 61.111 0.00 0.00 35.54 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 52 8.858003 TGTTTTCTTTTTATTACACGCATTCA 57.142 26.923 0.00 0.00 0.00 2.57
77 81 9.748708 TTGAAAGGAAAAATACATTGAGTTCAG 57.251 29.630 0.00 0.00 0.00 3.02
81 85 8.250143 AGGAAAAATACATTGAGTTCAGGTTT 57.750 30.769 0.00 0.00 0.00 3.27
103 107 8.367911 GGTTTCTTCTTTTCATTTTATGGGTCT 58.632 33.333 0.00 0.00 0.00 3.85
107 111 5.811190 TCTTTTCATTTTATGGGTCTCCGA 58.189 37.500 0.00 0.00 35.24 4.55
138 142 6.923012 TGGAAATGTTATCCAAATGACACAG 58.077 36.000 0.00 0.00 43.84 3.66
205 210 7.113404 CACATGCAACTAAACAACTTGTATCAC 59.887 37.037 0.00 0.00 0.00 3.06
206 211 5.743467 TGCAACTAAACAACTTGTATCACG 58.257 37.500 0.00 0.00 0.00 4.35
207 212 4.611366 GCAACTAAACAACTTGTATCACGC 59.389 41.667 0.00 0.00 0.00 5.34
254 259 3.054065 AGGAGAGGAGGCCTGTTTATTTG 60.054 47.826 12.00 0.00 31.76 2.32
259 264 3.589288 AGGAGGCCTGTTTATTTGAGAGT 59.411 43.478 12.00 0.00 29.57 3.24
316 687 2.087009 CCGACTTGACGAACGAGGC 61.087 63.158 0.14 0.00 34.74 4.70
343 714 1.740718 GCTTGGATTCCGTCTCCACTC 60.741 57.143 0.00 0.00 42.43 3.51
367 743 2.238395 GCTCTCAGATGAAAGGAACCCT 59.762 50.000 0.00 0.00 33.87 4.34
453 833 0.958091 TGTGGGAATCTTTTGCGTGG 59.042 50.000 0.00 0.00 0.00 4.94
499 879 2.032860 ATCCATCCTCGCTTCCGTGG 62.033 60.000 0.00 0.00 46.55 4.94
501 881 3.390521 ATCCTCGCTTCCGTGGCA 61.391 61.111 0.00 0.00 45.22 4.92
532 912 5.523916 GCGATGAACAGTTGATTGGTACTAT 59.476 40.000 2.49 0.00 0.00 2.12
717 1241 4.729856 GCCGTCCACGTACGCCTT 62.730 66.667 16.72 0.00 41.51 4.35
720 1244 2.341176 GTCCACGTACGCCTTGGT 59.659 61.111 16.72 0.00 0.00 3.67
721 1245 1.586028 GTCCACGTACGCCTTGGTA 59.414 57.895 16.72 3.61 0.00 3.25
722 1246 0.038343 GTCCACGTACGCCTTGGTAA 60.038 55.000 16.72 0.00 0.00 2.85
723 1247 0.896923 TCCACGTACGCCTTGGTAAT 59.103 50.000 16.72 0.00 0.00 1.89
724 1248 1.003851 CCACGTACGCCTTGGTAATG 58.996 55.000 16.72 2.28 0.00 1.90
817 1355 1.581954 CGCCGTCACTCTCTTGACT 59.418 57.895 2.06 0.00 43.30 3.41
822 1360 1.400371 CGTCACTCTCTTGACTGACCG 60.400 57.143 2.06 0.00 43.30 4.79
872 1410 2.288273 GGTCGATATGTACAGCCAGGTC 60.288 54.545 0.33 0.00 0.00 3.85
893 1446 4.326766 CCCACAACGCAACGCCAG 62.327 66.667 0.00 0.00 0.00 4.85
900 1453 1.511318 AACGCAACGCCAGCATACAA 61.511 50.000 0.00 0.00 0.00 2.41
914 1467 3.652869 AGCATACAACATACATAGGGGCT 59.347 43.478 0.00 0.00 0.00 5.19
930 1483 2.476320 GCTTTGATCTCTGCCCCGC 61.476 63.158 0.00 0.00 0.00 6.13
931 1484 1.821332 CTTTGATCTCTGCCCCGCC 60.821 63.158 0.00 0.00 0.00 6.13
932 1485 3.344137 TTTGATCTCTGCCCCGCCC 62.344 63.158 0.00 0.00 0.00 6.13
968 1521 7.364144 GCTTTCTCCACTCCAAATTTCCAATAT 60.364 37.037 0.00 0.00 0.00 1.28
974 1527 6.380846 CCACTCCAAATTTCCAATATTCAGGA 59.619 38.462 0.00 0.00 0.00 3.86
982 1535 6.652205 TTTCCAATATTCAGGAAGGTAGGT 57.348 37.500 7.19 0.00 44.15 3.08
983 1536 7.758820 TTTCCAATATTCAGGAAGGTAGGTA 57.241 36.000 7.19 0.00 44.15 3.08
984 1537 6.996180 TCCAATATTCAGGAAGGTAGGTAG 57.004 41.667 0.00 0.00 0.00 3.18
985 1538 6.449956 TCCAATATTCAGGAAGGTAGGTAGT 58.550 40.000 0.00 0.00 0.00 2.73
986 1539 7.598248 TCCAATATTCAGGAAGGTAGGTAGTA 58.402 38.462 0.00 0.00 0.00 1.82
1010 1563 0.109086 CTAGATACGATGGGCAGCCG 60.109 60.000 5.00 0.00 0.00 5.52
1477 2048 0.035439 CAGGTACGCCCACCATTTCT 60.035 55.000 4.32 0.00 41.40 2.52
1584 2161 4.082517 CCAACATAGATCGATCGATGGAGT 60.083 45.833 36.09 24.49 42.07 3.85
1599 2176 7.268199 TCGATGGAGTATATAGTTTGTTCGT 57.732 36.000 0.00 0.00 0.00 3.85
1668 2315 2.710377 TGACGATTTGAATGGGTGGAG 58.290 47.619 0.00 0.00 0.00 3.86
1702 2349 3.037549 TGGAAAGGCAATTGGAGTTGTT 58.962 40.909 7.72 0.00 0.00 2.83
1724 2372 6.071840 TGTTTTTCTTTCCTTCTTTTCGTGGA 60.072 34.615 0.00 0.00 0.00 4.02
1825 2473 6.790336 ACGTTTTGAACAATTCTTTCTTCG 57.210 33.333 0.00 0.00 0.00 3.79
1913 2580 0.390735 GGCAGCCAAGCAAAAGATGG 60.391 55.000 6.55 0.00 37.29 3.51
1937 2605 2.470781 CGCGCTTTCTTCTAGAACAACG 60.471 50.000 5.56 0.42 33.26 4.10
1944 2612 1.455786 CTTCTAGAACAACGCACACCG 59.544 52.381 0.00 0.00 44.21 4.94
2015 2763 5.463724 CGAACTATTGCCTCAATCTACTTCC 59.536 44.000 0.00 0.00 35.54 3.46
2297 3067 0.317160 TCGTCATCGTCAACTTGCCT 59.683 50.000 0.00 0.00 38.33 4.75
2307 3077 3.935203 CGTCAACTTGCCTACAATCTCAT 59.065 43.478 0.00 0.00 34.61 2.90
2404 3175 1.179152 TGCTCTGTTTGCATCCATGG 58.821 50.000 4.97 4.97 35.31 3.66
2451 3291 6.732154 CAGCTCAATAAACAATGGTATCCTG 58.268 40.000 0.00 0.00 0.00 3.86
2452 3292 5.829924 AGCTCAATAAACAATGGTATCCTGG 59.170 40.000 0.00 0.00 0.00 4.45
2453 3293 5.507985 GCTCAATAAACAATGGTATCCTGGC 60.508 44.000 0.00 0.00 0.00 4.85
2454 3294 4.892934 TCAATAAACAATGGTATCCTGGCC 59.107 41.667 0.00 0.00 0.00 5.36
2455 3295 4.814224 ATAAACAATGGTATCCTGGCCT 57.186 40.909 3.32 0.00 0.00 5.19
2456 3296 2.442236 AACAATGGTATCCTGGCCTG 57.558 50.000 3.32 2.54 0.00 4.85
2457 3297 0.552848 ACAATGGTATCCTGGCCTGG 59.447 55.000 22.36 22.36 0.00 4.45
2458 3298 0.825010 CAATGGTATCCTGGCCTGGC 60.825 60.000 23.46 11.05 0.00 4.85
2459 3299 0.995675 AATGGTATCCTGGCCTGGCT 60.996 55.000 23.46 16.77 0.00 4.75
2460 3300 1.713005 ATGGTATCCTGGCCTGGCTG 61.713 60.000 23.46 11.62 0.00 4.85
2461 3301 2.378634 GGTATCCTGGCCTGGCTGT 61.379 63.158 23.46 13.78 0.00 4.40
2462 3302 1.153086 GTATCCTGGCCTGGCTGTG 60.153 63.158 23.46 8.72 0.00 3.66
2463 3303 3.047807 TATCCTGGCCTGGCTGTGC 62.048 63.158 23.46 1.77 0.00 4.57
2465 3305 4.753662 CCTGGCCTGGCTGTGCAT 62.754 66.667 19.68 0.00 0.00 3.96
2466 3306 3.138798 CTGGCCTGGCTGTGCATC 61.139 66.667 19.68 0.00 0.00 3.91
2470 3310 2.827190 CCTGGCTGTGCATCGCAT 60.827 61.111 11.53 0.00 41.91 4.73
2471 3311 1.524393 CCTGGCTGTGCATCGCATA 60.524 57.895 11.53 0.00 41.91 3.14
2472 3312 0.887836 CCTGGCTGTGCATCGCATAT 60.888 55.000 11.53 0.00 41.91 1.78
2473 3313 0.237498 CTGGCTGTGCATCGCATATG 59.763 55.000 11.53 0.00 41.91 1.78
2474 3314 0.179051 TGGCTGTGCATCGCATATGA 60.179 50.000 6.97 0.00 41.91 2.15
2475 3315 1.162698 GGCTGTGCATCGCATATGAT 58.837 50.000 6.97 0.00 41.91 2.45
2476 3316 1.129998 GGCTGTGCATCGCATATGATC 59.870 52.381 6.97 0.00 41.91 2.92
2477 3317 1.201888 GCTGTGCATCGCATATGATCG 60.202 52.381 6.97 1.27 41.91 3.69
2478 3318 2.331194 CTGTGCATCGCATATGATCGA 58.669 47.619 6.97 7.41 41.91 3.59
2479 3319 2.928116 CTGTGCATCGCATATGATCGAT 59.072 45.455 6.97 9.53 45.11 3.59
2924 4554 1.154093 CGCGCAGGTTTAGAGACGA 60.154 57.895 8.75 0.00 0.00 4.20
2930 4560 3.391049 GCAGGTTTAGAGACGACAAAGT 58.609 45.455 0.00 0.00 0.00 2.66
2999 4629 2.367512 GGAGGTGGAGATGGGGCT 60.368 66.667 0.00 0.00 0.00 5.19
3058 4688 2.034878 TGGCAGTGAGCTTCGAGATAT 58.965 47.619 0.00 0.00 44.79 1.63
3141 4771 3.500680 CGATCCTAGCTAGAGACCTCAAC 59.499 52.174 22.70 2.55 0.00 3.18
3154 4784 7.062749 AGAGACCTCAACTTATGTTTGTACA 57.937 36.000 0.00 0.00 38.95 2.90
3451 5081 7.364144 CGGGATCACATCATTAGGAGAATGATA 60.364 40.741 11.40 0.00 43.38 2.15
3514 5144 7.812648 TCGTTTAGTATGTTGCTATTGCTTTT 58.187 30.769 0.00 0.00 40.48 2.27
3792 5422 9.128404 AGTTAGTTGTAGGATGATGTATTACGA 57.872 33.333 0.00 0.00 0.00 3.43
4027 5657 5.065218 GTCTACATAGTTCTCGAACCCGTAA 59.935 44.000 6.20 0.00 42.06 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 8.058915 TGCGTGTAATAAAAAGAAAACAAATGC 58.941 29.630 0.00 0.00 0.00 3.56
37 41 5.697473 TCCTTTCAAATTGAATGCGTGTA 57.303 34.783 9.41 0.00 36.11 2.90
41 45 8.494347 TGTATTTTTCCTTTCAAATTGAATGCG 58.506 29.630 9.41 6.52 36.11 4.73
77 81 8.367911 AGACCCATAAAATGAAAAGAAGAAACC 58.632 33.333 0.00 0.00 0.00 3.27
81 85 6.374333 CGGAGACCCATAAAATGAAAAGAAGA 59.626 38.462 0.00 0.00 0.00 2.87
103 107 5.588648 GGATAACATTTCCATTGAACTCGGA 59.411 40.000 0.00 0.00 33.21 4.55
107 111 8.814931 TCATTTGGATAACATTTCCATTGAACT 58.185 29.630 0.00 0.00 42.69 3.01
254 259 6.560253 TTCTAAGCAAACCATTTGACTCTC 57.440 37.500 5.49 0.00 43.26 3.20
259 264 6.721208 AGGATCTTTCTAAGCAAACCATTTGA 59.279 34.615 5.49 0.00 43.26 2.69
316 687 3.508840 GGAATCCAAGCGGCCACG 61.509 66.667 2.24 0.00 44.63 4.94
343 714 0.826715 TCCTTTCATCTGAGAGCCCG 59.173 55.000 0.00 0.00 0.00 6.13
453 833 0.924090 CGCGCAGATACTTGGACTTC 59.076 55.000 8.75 0.00 0.00 3.01
532 912 5.931532 GCTACGCGATTGGTAGTATAGTAA 58.068 41.667 15.93 0.00 39.60 2.24
566 947 2.161030 GATCCGGACGGTTAGATAGCT 58.839 52.381 6.12 0.00 36.47 3.32
717 1241 1.827394 GCTAGCCGACCCATTACCA 59.173 57.895 2.29 0.00 0.00 3.25
720 1244 2.083835 GAGCGCTAGCCGACCCATTA 62.084 60.000 11.50 0.00 46.67 1.90
721 1245 3.447025 GAGCGCTAGCCGACCCATT 62.447 63.158 11.50 0.00 46.67 3.16
722 1246 3.917760 GAGCGCTAGCCGACCCAT 61.918 66.667 11.50 0.00 46.67 4.00
872 1410 4.326766 CGTTGCGTTGTGGGCAGG 62.327 66.667 0.00 0.00 42.12 4.85
893 1446 4.021102 AGCCCCTATGTATGTTGTATGC 57.979 45.455 0.00 0.00 0.00 3.14
900 1453 4.910304 AGAGATCAAAGCCCCTATGTATGT 59.090 41.667 0.00 0.00 0.00 2.29
914 1467 2.272146 GGCGGGGCAGAGATCAAA 59.728 61.111 0.00 0.00 0.00 2.69
968 1521 4.279145 CAGCTACTACCTACCTTCCTGAA 58.721 47.826 0.00 0.00 0.00 3.02
974 1527 4.792513 TCTAGCAGCTACTACCTACCTT 57.207 45.455 0.00 0.00 0.00 3.50
982 1535 4.262617 CCCATCGTATCTAGCAGCTACTA 58.737 47.826 0.00 0.00 0.00 1.82
983 1536 3.085533 CCCATCGTATCTAGCAGCTACT 58.914 50.000 0.00 0.00 0.00 2.57
984 1537 2.416162 GCCCATCGTATCTAGCAGCTAC 60.416 54.545 0.00 0.00 0.00 3.58
985 1538 1.819288 GCCCATCGTATCTAGCAGCTA 59.181 52.381 1.13 1.13 0.00 3.32
986 1539 0.605589 GCCCATCGTATCTAGCAGCT 59.394 55.000 0.00 0.00 0.00 4.24
1026 1579 3.069318 GTCCTCTCCTCCGCCGTT 61.069 66.667 0.00 0.00 0.00 4.44
1125 1678 4.069232 CGGAAGCAGGGCGAGACA 62.069 66.667 0.00 0.00 0.00 3.41
1176 1729 2.037687 TAGTCCGGCGGGAGGAAA 59.962 61.111 27.98 1.38 44.97 3.13
1278 1849 0.253327 GGTAGGCCTCCTTCTTGGTG 59.747 60.000 9.68 0.00 34.61 4.17
1584 2161 8.706492 ATGGAACGAAACGAACAAACTATATA 57.294 30.769 0.00 0.00 0.00 0.86
1599 2176 5.425577 TTGATTCACGAAATGGAACGAAA 57.574 34.783 0.00 0.00 0.00 3.46
1680 2327 3.037549 ACAACTCCAATTGCCTTTCCAA 58.962 40.909 0.00 0.00 32.47 3.53
1702 2349 5.650703 ACTCCACGAAAAGAAGGAAAGAAAA 59.349 36.000 0.00 0.00 0.00 2.29
1724 2372 2.035632 CTCTCCAATCGCCTTCCTACT 58.964 52.381 0.00 0.00 0.00 2.57
1806 2454 8.980143 AAGAAACGAAGAAAGAATTGTTCAAA 57.020 26.923 0.00 0.00 38.41 2.69
1913 2580 1.683790 TTCTAGAAGAAAGCGCGCGC 61.684 55.000 45.10 45.10 42.33 6.86
1914 2581 0.023858 GTTCTAGAAGAAAGCGCGCG 59.976 55.000 28.44 28.44 35.75 6.86
1937 2605 3.936453 TGGACTAATTGTAATCGGTGTGC 59.064 43.478 0.00 0.00 0.00 4.57
1944 2612 7.819900 AGTCTCACTGTTGGACTAATTGTAATC 59.180 37.037 9.70 0.00 38.37 1.75
2037 2785 5.197682 AGTCTACTACGTATGGGAAATGC 57.802 43.478 0.00 0.00 0.00 3.56
2404 3175 0.577269 GATGCACGCGGATACAGTTC 59.423 55.000 12.47 0.00 0.00 3.01
2453 3293 0.887836 ATATGCGATGCACAGCCAGG 60.888 55.000 12.01 0.00 43.04 4.45
2454 3294 0.237498 CATATGCGATGCACAGCCAG 59.763 55.000 12.01 0.00 43.04 4.85
2455 3295 0.179051 TCATATGCGATGCACAGCCA 60.179 50.000 12.01 1.73 43.04 4.75
2456 3296 1.129998 GATCATATGCGATGCACAGCC 59.870 52.381 12.01 0.00 43.04 4.85
2457 3297 1.201888 CGATCATATGCGATGCACAGC 60.202 52.381 8.16 8.16 43.04 4.40
2458 3298 2.331194 TCGATCATATGCGATGCACAG 58.669 47.619 0.00 0.00 43.04 3.66
2459 3299 2.437200 TCGATCATATGCGATGCACA 57.563 45.000 0.00 0.00 43.04 4.57
2481 3321 1.010419 GCAAACTTGCGGGCAATCTG 61.010 55.000 6.54 5.96 45.11 2.90
2482 3322 1.290009 GCAAACTTGCGGGCAATCT 59.710 52.632 6.54 0.00 45.11 2.40
2483 3323 3.860717 GCAAACTTGCGGGCAATC 58.139 55.556 6.54 0.00 45.11 2.67
2826 4456 1.908793 CACGGTGGTCTCCTGGTCT 60.909 63.158 0.00 0.00 0.00 3.85
2916 4546 4.142534 CCGTCCATAACTTTGTCGTCTCTA 60.143 45.833 0.00 0.00 0.00 2.43
2924 4554 1.435577 GACGCCGTCCATAACTTTGT 58.564 50.000 5.81 0.00 0.00 2.83
3042 4672 2.366916 CCCCAATATCTCGAAGCTCACT 59.633 50.000 0.00 0.00 0.00 3.41
3141 4771 8.420374 ACCGATATTCAGTGTACAAACATAAG 57.580 34.615 0.00 0.00 38.08 1.73
3154 4784 4.554919 CGACGAGATGAACCGATATTCAGT 60.555 45.833 0.00 0.00 41.76 3.41
3451 5081 4.855340 ACGGAATGGGTCAAGTCAATTAT 58.145 39.130 0.00 0.00 0.00 1.28
3453 5083 3.154827 ACGGAATGGGTCAAGTCAATT 57.845 42.857 0.00 0.00 0.00 2.32
3776 5406 6.145338 ACTCGTTTCGTAATACATCATCCT 57.855 37.500 0.00 0.00 0.00 3.24
3792 5422 3.057734 CGGCAAGTCTCTTTACTCGTTT 58.942 45.455 0.00 0.00 0.00 3.60
3833 5463 4.563337 TTCGATCGTCGGTATCTCAATT 57.437 40.909 15.94 0.00 40.88 2.32
3919 5549 6.982852 TCCCACATATTCTACGAAGATCTTC 58.017 40.000 23.20 23.20 36.29 2.87
4027 5657 2.431942 CGTTAAGCGTGCGGACCT 60.432 61.111 0.00 0.00 35.54 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.