Multiple sequence alignment - TraesCS7D01G299700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G299700 chr7D 100.000 4349 0 0 1 4349 379771204 379766856 0.000000e+00 8032.0
1 TraesCS7D01G299700 chr7D 85.683 454 59 4 311 762 465162021 465162470 1.420000e-129 473.0
2 TraesCS7D01G299700 chr7D 87.980 391 38 4 1 382 585195337 585194947 1.840000e-123 453.0
3 TraesCS7D01G299700 chr7D 96.875 96 2 1 1610 1705 426558893 426558987 4.500000e-35 159.0
4 TraesCS7D01G299700 chr7D 96.809 94 2 1 1614 1707 22964254 22964346 5.820000e-34 156.0
5 TraesCS7D01G299700 chr7A 94.234 1318 42 5 2394 3682 428339510 428338198 0.000000e+00 1982.0
6 TraesCS7D01G299700 chr7A 95.405 740 29 2 883 1618 428340820 428340082 0.000000e+00 1173.0
7 TraesCS7D01G299700 chr7A 93.678 348 13 4 1894 2235 428339853 428339509 3.000000e-141 512.0
8 TraesCS7D01G299700 chr7A 84.806 283 27 8 3684 3963 428338160 428337891 1.990000e-68 270.0
9 TraesCS7D01G299700 chr7A 88.835 206 12 4 4079 4275 428333735 428333532 4.350000e-60 243.0
10 TraesCS7D01G299700 chr7A 95.652 92 3 1 1527 1618 428340058 428339968 3.500000e-31 147.0
11 TraesCS7D01G299700 chr7A 93.000 100 6 1 1731 1830 428339946 428339848 1.260000e-30 145.0
12 TraesCS7D01G299700 chr7A 95.062 81 3 1 4270 4349 428331212 428331132 4.570000e-25 126.0
13 TraesCS7D01G299700 chr7B 93.455 825 43 6 2864 3682 374775092 374774273 0.000000e+00 1214.0
14 TraesCS7D01G299700 chr7B 97.154 492 14 0 898 1389 374802767 374802276 0.000000e+00 832.0
15 TraesCS7D01G299700 chr7B 92.647 544 12 5 1699 2235 374776112 374775590 0.000000e+00 758.0
16 TraesCS7D01G299700 chr7B 94.292 473 26 1 2394 2865 374775591 374775119 0.000000e+00 723.0
17 TraesCS7D01G299700 chr7B 84.095 591 68 14 1 579 582657576 582658152 8.220000e-152 547.0
18 TraesCS7D01G299700 chr7B 94.068 236 13 1 1384 1618 374776345 374776110 1.490000e-94 357.0
19 TraesCS7D01G299700 chr7B 82.878 403 33 12 3933 4316 374773698 374773313 3.240000e-86 329.0
20 TraesCS7D01G299700 chr7B 92.553 94 6 1 3680 3772 374774236 374774143 2.730000e-27 134.0
21 TraesCS7D01G299700 chr3D 86.667 765 79 13 1 761 402498309 402497564 0.000000e+00 826.0
22 TraesCS7D01G299700 chr3D 85.825 776 88 7 1 758 517293658 517294429 0.000000e+00 804.0
23 TraesCS7D01G299700 chr3D 85.268 448 46 10 1 432 549352587 549353030 1.110000e-120 444.0
24 TraesCS7D01G299700 chr3D 94.083 169 10 0 2231 2399 595025140 595024972 1.550000e-64 257.0
25 TraesCS7D01G299700 chr3D 91.713 181 14 1 2216 2395 612268629 612268449 2.600000e-62 250.0
26 TraesCS7D01G299700 chr3D 83.645 214 27 4 3840 4046 169450401 169450189 1.230000e-45 195.0
27 TraesCS7D01G299700 chr3D 92.453 106 6 2 1608 1711 459472532 459472427 2.710000e-32 150.0
28 TraesCS7D01G299700 chr3B 86.180 767 85 9 1 750 489718380 489719142 0.000000e+00 809.0
29 TraesCS7D01G299700 chr3B 87.195 164 20 1 3883 4046 759028105 759028267 7.430000e-43 185.0
30 TraesCS7D01G299700 chr3B 82.589 224 23 4 3838 4045 511628731 511628954 2.670000e-42 183.0
31 TraesCS7D01G299700 chr3B 92.453 106 4 3 1616 1718 302899604 302899500 9.740000e-32 148.0
32 TraesCS7D01G299700 chr2D 85.733 764 91 8 1 750 555477151 555476392 0.000000e+00 791.0
33 TraesCS7D01G299700 chr2D 83.007 765 116 12 1 761 44529502 44530256 0.000000e+00 680.0
34 TraesCS7D01G299700 chr2D 85.202 446 60 4 314 757 517258905 517258464 1.840000e-123 453.0
35 TraesCS7D01G299700 chr2D 95.092 163 8 0 2233 2395 362930970 362930808 1.550000e-64 257.0
36 TraesCS7D01G299700 chr2D 84.541 207 30 2 3838 4043 119558282 119558077 2.050000e-48 204.0
37 TraesCS7D01G299700 chr2D 82.692 208 30 4 3842 4043 349584562 349584769 3.460000e-41 180.0
38 TraesCS7D01G299700 chr2D 96.842 95 3 0 1611 1705 601266051 601266145 4.500000e-35 159.0
39 TraesCS7D01G299700 chr2A 85.477 723 93 4 1 720 26767327 26768040 0.000000e+00 743.0
40 TraesCS7D01G299700 chr4B 83.592 774 106 12 2 759 614126849 614127617 0.000000e+00 706.0
41 TraesCS7D01G299700 chr4B 95.062 162 8 0 2234 2395 135218210 135218049 5.580000e-64 255.0
42 TraesCS7D01G299700 chr4B 86.127 173 20 4 3879 4050 411490572 411490741 2.670000e-42 183.0
43 TraesCS7D01G299700 chr2B 83.745 769 102 14 1 758 747604530 747603774 0.000000e+00 706.0
44 TraesCS7D01G299700 chr2B 82.938 211 31 3 3838 4043 682945443 682945653 7.430000e-43 185.0
45 TraesCS7D01G299700 chrUn 82.745 765 118 12 1 761 399659863 399660617 0.000000e+00 669.0
46 TraesCS7D01G299700 chrUn 91.160 181 14 2 2216 2395 34210735 34210914 1.210000e-60 244.0
47 TraesCS7D01G299700 chr4D 86.010 629 72 7 143 759 483674676 483675300 0.000000e+00 660.0
48 TraesCS7D01G299700 chr1B 86.567 402 45 1 1 393 410309221 410308820 6.680000e-118 435.0
49 TraesCS7D01G299700 chr1B 93.529 170 11 0 2226 2395 652464936 652464767 2.010000e-63 254.0
50 TraesCS7D01G299700 chr1B 84.722 72 8 1 4069 4137 156962742 156962813 7.800000e-08 69.4
51 TraesCS7D01G299700 chr4A 94.578 166 9 0 2233 2398 517406633 517406468 1.550000e-64 257.0
52 TraesCS7D01G299700 chr4A 93.269 104 5 2 1605 1708 69329844 69329945 7.530000e-33 152.0
53 TraesCS7D01G299700 chr4A 94.286 35 2 0 4186 4220 484836554 484836588 2.000000e-03 54.7
54 TraesCS7D01G299700 chr5D 95.597 159 7 0 2234 2392 542693295 542693453 5.580000e-64 255.0
55 TraesCS7D01G299700 chr1D 94.048 168 10 0 2228 2395 338937206 338937373 5.580000e-64 255.0
56 TraesCS7D01G299700 chr1D 82.870 216 28 5 3838 4045 26259152 26258938 7.430000e-43 185.0
57 TraesCS7D01G299700 chr5B 83.732 209 32 2 3838 4046 663242368 663242162 3.430000e-46 196.0
58 TraesCS7D01G299700 chr5B 81.046 153 24 4 4072 4220 390703512 390703361 2.750000e-22 117.0
59 TraesCS7D01G299700 chr3A 83.019 212 23 7 3840 4043 197850721 197850927 3.460000e-41 180.0
60 TraesCS7D01G299700 chr6D 95.876 97 4 0 1611 1707 62245407 62245311 1.620000e-34 158.0
61 TraesCS7D01G299700 chr6B 94.000 100 4 2 1609 1708 14523413 14523316 2.710000e-32 150.0
62 TraesCS7D01G299700 chr6A 94.737 95 4 1 1609 1703 557970041 557970134 3.500000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G299700 chr7D 379766856 379771204 4348 True 8032.000000 8032 100.000000 1 4349 1 chr7D.!!$R1 4348
1 TraesCS7D01G299700 chr7A 428337891 428340820 2929 True 704.833333 1982 92.795833 883 3963 6 chr7A.!!$R2 3080
2 TraesCS7D01G299700 chr7B 374773313 374776345 3032 True 585.833333 1214 91.648833 1384 4316 6 chr7B.!!$R2 2932
3 TraesCS7D01G299700 chr7B 582657576 582658152 576 False 547.000000 547 84.095000 1 579 1 chr7B.!!$F1 578
4 TraesCS7D01G299700 chr3D 402497564 402498309 745 True 826.000000 826 86.667000 1 761 1 chr3D.!!$R2 760
5 TraesCS7D01G299700 chr3D 517293658 517294429 771 False 804.000000 804 85.825000 1 758 1 chr3D.!!$F1 757
6 TraesCS7D01G299700 chr3B 489718380 489719142 762 False 809.000000 809 86.180000 1 750 1 chr3B.!!$F1 749
7 TraesCS7D01G299700 chr2D 555476392 555477151 759 True 791.000000 791 85.733000 1 750 1 chr2D.!!$R4 749
8 TraesCS7D01G299700 chr2D 44529502 44530256 754 False 680.000000 680 83.007000 1 761 1 chr2D.!!$F1 760
9 TraesCS7D01G299700 chr2A 26767327 26768040 713 False 743.000000 743 85.477000 1 720 1 chr2A.!!$F1 719
10 TraesCS7D01G299700 chr4B 614126849 614127617 768 False 706.000000 706 83.592000 2 759 1 chr4B.!!$F2 757
11 TraesCS7D01G299700 chr2B 747603774 747604530 756 True 706.000000 706 83.745000 1 758 1 chr2B.!!$R1 757
12 TraesCS7D01G299700 chrUn 399659863 399660617 754 False 669.000000 669 82.745000 1 761 1 chrUn.!!$F2 760
13 TraesCS7D01G299700 chr4D 483674676 483675300 624 False 660.000000 660 86.010000 143 759 1 chr4D.!!$F1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
580 637 0.027324 TACGCCGCGTTTTCGTTTTT 59.973 45.0 25.47 0.00 46.03 1.94 F
721 779 0.040351 TCCATTTTCATCCCGCCCAA 59.960 50.0 0.00 0.00 0.00 4.12 F
1631 1695 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.0 0.00 0.00 0.00 4.37 F
1963 2135 0.249657 TTGTGGTTGCGAATTTGCCC 60.250 50.0 15.20 10.25 0.00 5.36 F
1998 2170 0.593128 ATTTGTCGCCAACTGTGCTC 59.407 50.0 0.00 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2038 2211 0.613777 AGAAAGTTACAGGGAGGGCG 59.386 55.0 0.00 0.0 0.00 6.13 R
2683 2888 0.319813 GTGGCCACCTTTGTTGCATC 60.320 55.0 26.31 0.0 34.91 3.91 R
2844 3050 0.394192 CCTCACAGTGACAGGCTCAA 59.606 55.0 0.00 0.0 0.00 3.02 R
3151 3386 0.541764 GCCCTGGTTCCCATGTTCAA 60.542 55.0 0.00 0.0 30.82 2.69 R
3762 4042 1.338107 CCCTTTTCACCAAGTTCCCC 58.662 55.0 0.00 0.0 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.089201 TCTCATTCCGACGAACAGCTA 58.911 47.619 0.00 0.00 0.00 3.32
69 70 6.713903 CAGCTATCTTATGGACCAACATGATT 59.286 38.462 0.00 0.00 32.39 2.57
149 150 2.002586 CACAACCTAAGCGACATCCAG 58.997 52.381 0.00 0.00 0.00 3.86
230 244 4.040198 GAGGAGGGGGAGGGGGTT 62.040 72.222 0.00 0.00 0.00 4.11
249 263 3.534721 GCTTACCAGCTTCGAGGTT 57.465 52.632 0.00 0.00 43.51 3.50
337 386 4.400961 GCTCCTGCCGCCTCTTGT 62.401 66.667 0.00 0.00 0.00 3.16
362 411 3.075005 GGGGAGTGTCGCAGCCTA 61.075 66.667 0.00 0.00 0.00 3.93
484 537 0.701731 TAAATGGGGTGGTGAGGGTG 59.298 55.000 0.00 0.00 0.00 4.61
580 637 0.027324 TACGCCGCGTTTTCGTTTTT 59.973 45.000 25.47 0.00 46.03 1.94
590 647 1.104630 TTTCGTTTTTCGCCCCACTT 58.895 45.000 0.00 0.00 39.67 3.16
702 759 1.526575 CCTGCAGGCAACCAAACGAT 61.527 55.000 22.33 0.00 37.17 3.73
715 773 3.447229 ACCAAACGATCCATTTTCATCCC 59.553 43.478 0.00 0.00 0.00 3.85
720 778 0.261402 ATCCATTTTCATCCCGCCCA 59.739 50.000 0.00 0.00 0.00 5.36
721 779 0.040351 TCCATTTTCATCCCGCCCAA 59.960 50.000 0.00 0.00 0.00 4.12
761 820 1.740296 CCACCAAACGCGTCCCTAG 60.740 63.158 14.44 2.77 0.00 3.02
762 821 2.047560 ACCAAACGCGTCCCTAGC 60.048 61.111 14.44 0.00 0.00 3.42
769 828 4.827481 GCGTCCCTAGCGATCAAA 57.173 55.556 0.00 0.00 0.00 2.69
770 829 3.059603 GCGTCCCTAGCGATCAAAA 57.940 52.632 0.00 0.00 0.00 2.44
771 830 1.365699 GCGTCCCTAGCGATCAAAAA 58.634 50.000 0.00 0.00 0.00 1.94
825 884 8.980481 AAAAGAAAAACTAAGGAGAGATCACA 57.020 30.769 0.00 0.00 0.00 3.58
826 885 9.579932 AAAAGAAAAACTAAGGAGAGATCACAT 57.420 29.630 0.00 0.00 0.00 3.21
827 886 8.785329 AAGAAAAACTAAGGAGAGATCACATC 57.215 34.615 0.00 0.00 0.00 3.06
828 887 8.144862 AGAAAAACTAAGGAGAGATCACATCT 57.855 34.615 0.00 0.00 43.70 2.90
829 888 9.261035 AGAAAAACTAAGGAGAGATCACATCTA 57.739 33.333 0.00 0.00 40.38 1.98
830 889 9.877178 GAAAAACTAAGGAGAGATCACATCTAA 57.123 33.333 0.00 0.00 40.38 2.10
834 893 8.189119 ACTAAGGAGAGATCACATCTAAATCC 57.811 38.462 0.00 4.69 40.38 3.01
835 894 7.786943 ACTAAGGAGAGATCACATCTAAATCCA 59.213 37.037 0.00 0.00 40.38 3.41
836 895 7.443302 AAGGAGAGATCACATCTAAATCCAA 57.557 36.000 0.00 0.00 40.38 3.53
837 896 6.825610 AGGAGAGATCACATCTAAATCCAAC 58.174 40.000 0.00 0.00 40.38 3.77
838 897 6.385176 AGGAGAGATCACATCTAAATCCAACA 59.615 38.462 0.00 0.00 40.38 3.33
839 898 6.705381 GGAGAGATCACATCTAAATCCAACAG 59.295 42.308 0.00 0.00 40.38 3.16
840 899 7.192852 AGAGATCACATCTAAATCCAACAGT 57.807 36.000 0.00 0.00 40.38 3.55
841 900 7.628234 AGAGATCACATCTAAATCCAACAGTT 58.372 34.615 0.00 0.00 40.38 3.16
842 901 8.105829 AGAGATCACATCTAAATCCAACAGTTT 58.894 33.333 0.00 0.00 40.38 2.66
843 902 8.641498 AGATCACATCTAAATCCAACAGTTTT 57.359 30.769 0.00 0.00 38.00 2.43
844 903 8.517878 AGATCACATCTAAATCCAACAGTTTTG 58.482 33.333 0.00 0.00 38.00 2.44
845 904 6.980593 TCACATCTAAATCCAACAGTTTTGG 58.019 36.000 1.27 1.27 40.87 3.28
855 914 5.690865 TCCAACAGTTTTGGACTTAGATGT 58.309 37.500 6.66 0.00 43.17 3.06
856 915 6.833041 TCCAACAGTTTTGGACTTAGATGTA 58.167 36.000 6.66 0.00 43.17 2.29
857 916 7.284074 TCCAACAGTTTTGGACTTAGATGTAA 58.716 34.615 6.66 0.00 43.17 2.41
858 917 7.444183 TCCAACAGTTTTGGACTTAGATGTAAG 59.556 37.037 6.66 8.04 43.17 2.34
859 918 7.444183 CCAACAGTTTTGGACTTAGATGTAAGA 59.556 37.037 16.03 0.00 42.06 2.10
860 919 9.003658 CAACAGTTTTGGACTTAGATGTAAGAT 57.996 33.333 16.03 1.10 38.39 2.40
869 928 9.352191 TGGACTTAGATGTAAGATAAGTACTCC 57.648 37.037 16.03 9.87 39.89 3.85
870 929 9.352191 GGACTTAGATGTAAGATAAGTACTCCA 57.648 37.037 16.03 0.00 39.28 3.86
875 934 8.768501 AGATGTAAGATAAGTACTCCATGTGA 57.231 34.615 0.00 0.00 0.00 3.58
876 935 9.201989 AGATGTAAGATAAGTACTCCATGTGAA 57.798 33.333 0.00 0.00 0.00 3.18
877 936 9.817809 GATGTAAGATAAGTACTCCATGTGAAA 57.182 33.333 0.00 0.00 0.00 2.69
881 940 8.894768 AAGATAAGTACTCCATGTGAAATAGC 57.105 34.615 0.00 0.00 0.00 2.97
887 946 6.942576 AGTACTCCATGTGAAATAGCAAAACT 59.057 34.615 0.00 0.00 0.00 2.66
915 978 8.679288 AATTGCTTTCTGTAATCTCAAAATCG 57.321 30.769 0.00 0.00 30.66 3.34
929 992 5.688621 TCTCAAAATCGATTAACCGTATCCG 59.311 40.000 11.83 0.00 0.00 4.18
932 995 4.843220 AATCGATTAACCGTATCCGTCT 57.157 40.909 9.39 0.00 0.00 4.18
947 1010 2.370849 TCCGTCTCCACCTTTAAGCTTT 59.629 45.455 3.20 0.00 0.00 3.51
1203 1266 2.772691 CGAGGCCACCTACGTCTCC 61.773 68.421 5.01 0.00 31.76 3.71
1291 1354 3.358076 CTCCGAGGCACCCTTCGAC 62.358 68.421 0.28 0.00 31.76 4.20
1322 1385 2.830370 CAAGGCCGATTCCCCTGC 60.830 66.667 0.00 0.00 0.00 4.85
1401 1464 1.206371 GTCTATGTTGCCGGGTACTGT 59.794 52.381 2.18 0.00 0.00 3.55
1410 1473 2.345991 GGGTACTGTGCAGGCGAA 59.654 61.111 4.11 0.00 0.00 4.70
1505 1568 2.644992 GCCTTTGGCGGTGAGTTG 59.355 61.111 0.00 0.00 39.62 3.16
1530 1594 6.312399 TCAAAATTCGACAGCATTAGTTGT 57.688 33.333 0.00 0.00 42.24 3.32
1549 1613 9.653287 TTAGTTGTTCCATCTTACTGATTAGTG 57.347 33.333 0.00 0.00 37.78 2.74
1615 1679 6.986231 GGCAACAAAAAGGGATCCTAATAATG 59.014 38.462 12.58 7.03 31.13 1.90
1616 1680 7.364673 GGCAACAAAAAGGGATCCTAATAATGT 60.365 37.037 12.58 7.65 31.13 2.71
1617 1681 8.691797 GCAACAAAAAGGGATCCTAATAATGTA 58.308 33.333 12.58 0.00 31.13 2.29
1619 1683 9.990868 AACAAAAAGGGATCCTAATAATGTACT 57.009 29.630 12.58 0.00 31.13 2.73
1620 1684 9.628500 ACAAAAAGGGATCCTAATAATGTACTC 57.372 33.333 12.58 0.00 31.13 2.59
1621 1685 9.067986 CAAAAAGGGATCCTAATAATGTACTCC 57.932 37.037 12.58 0.00 31.13 3.85
1622 1686 6.954352 AAGGGATCCTAATAATGTACTCCC 57.046 41.667 12.58 2.10 41.20 4.30
1623 1687 6.248080 AGGGATCCTAATAATGTACTCCCT 57.752 41.667 12.58 6.26 45.19 4.20
1624 1688 6.265304 AGGGATCCTAATAATGTACTCCCTC 58.735 44.000 12.58 0.00 46.70 4.30
1625 1689 5.425862 GGGATCCTAATAATGTACTCCCTCC 59.574 48.000 12.58 0.00 38.44 4.30
1626 1690 5.127356 GGATCCTAATAATGTACTCCCTCCG 59.873 48.000 3.84 0.00 0.00 4.63
1627 1691 5.070823 TCCTAATAATGTACTCCCTCCGT 57.929 43.478 0.00 0.00 0.00 4.69
1628 1692 5.075493 TCCTAATAATGTACTCCCTCCGTC 58.925 45.833 0.00 0.00 0.00 4.79
1629 1693 4.220163 CCTAATAATGTACTCCCTCCGTCC 59.780 50.000 0.00 0.00 0.00 4.79
1630 1694 2.077687 TAATGTACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
1631 1695 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
1632 1696 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
1633 1697 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
1634 1698 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
1635 1699 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
1636 1700 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
1637 1701 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1638 1702 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1639 1703 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1640 1704 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1641 1705 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1642 1706 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
1643 1707 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
1644 1708 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
1645 1709 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
1646 1710 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
1647 1711 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
1648 1712 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
1649 1713 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
1674 1738 3.800531 ACTAGTGTAGTGCCAAAAACGT 58.199 40.909 0.00 0.00 37.69 3.99
1675 1739 4.193865 ACTAGTGTAGTGCCAAAAACGTT 58.806 39.130 0.00 0.00 37.69 3.99
1676 1740 3.685836 AGTGTAGTGCCAAAAACGTTC 57.314 42.857 0.00 0.00 0.00 3.95
1677 1741 3.275999 AGTGTAGTGCCAAAAACGTTCT 58.724 40.909 0.00 0.00 0.00 3.01
1678 1742 3.692593 AGTGTAGTGCCAAAAACGTTCTT 59.307 39.130 0.00 0.00 0.00 2.52
1679 1743 4.877251 AGTGTAGTGCCAAAAACGTTCTTA 59.123 37.500 0.00 0.00 0.00 2.10
1680 1744 5.529800 AGTGTAGTGCCAAAAACGTTCTTAT 59.470 36.000 0.00 0.00 0.00 1.73
1681 1745 6.707161 AGTGTAGTGCCAAAAACGTTCTTATA 59.293 34.615 0.00 0.00 0.00 0.98
1682 1746 7.389607 AGTGTAGTGCCAAAAACGTTCTTATAT 59.610 33.333 0.00 0.00 0.00 0.86
1683 1747 8.019094 GTGTAGTGCCAAAAACGTTCTTATATT 58.981 33.333 0.00 0.00 0.00 1.28
1684 1748 9.217278 TGTAGTGCCAAAAACGTTCTTATATTA 57.783 29.630 0.00 0.00 0.00 0.98
1687 1751 8.188139 AGTGCCAAAAACGTTCTTATATTATGG 58.812 33.333 0.00 3.63 0.00 2.74
1688 1752 7.434013 GTGCCAAAAACGTTCTTATATTATGGG 59.566 37.037 0.00 0.00 0.00 4.00
1689 1753 7.339721 TGCCAAAAACGTTCTTATATTATGGGA 59.660 33.333 0.00 1.11 0.00 4.37
1690 1754 7.646526 GCCAAAAACGTTCTTATATTATGGGAC 59.353 37.037 0.00 0.00 0.00 4.46
1691 1755 7.853929 CCAAAAACGTTCTTATATTATGGGACG 59.146 37.037 0.00 9.33 0.00 4.79
1692 1756 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
1693 1757 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
1694 1758 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
1695 1759 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
1696 1760 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
1697 1761 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
1737 1907 1.001048 CAGAATGTGGTTGTGTGCCTG 60.001 52.381 0.00 0.00 0.00 4.85
1833 2005 8.441311 TCTTCCAGTTCTTCCTATATATGCAT 57.559 34.615 3.79 3.79 0.00 3.96
1837 2009 8.531982 TCCAGTTCTTCCTATATATGCATGTAC 58.468 37.037 10.16 0.00 0.00 2.90
1882 2054 3.356529 AGCCCCAGTCTCACTTTTATG 57.643 47.619 0.00 0.00 0.00 1.90
1884 2056 3.525199 AGCCCCAGTCTCACTTTTATGAT 59.475 43.478 0.00 0.00 0.00 2.45
1885 2057 4.018050 AGCCCCAGTCTCACTTTTATGATT 60.018 41.667 0.00 0.00 0.00 2.57
1886 2058 4.706962 GCCCCAGTCTCACTTTTATGATTT 59.293 41.667 0.00 0.00 0.00 2.17
1887 2059 5.185828 GCCCCAGTCTCACTTTTATGATTTT 59.814 40.000 0.00 0.00 0.00 1.82
1888 2060 6.377146 GCCCCAGTCTCACTTTTATGATTTTA 59.623 38.462 0.00 0.00 0.00 1.52
1889 2061 7.068716 GCCCCAGTCTCACTTTTATGATTTTAT 59.931 37.037 0.00 0.00 0.00 1.40
1890 2062 8.624776 CCCCAGTCTCACTTTTATGATTTTATC 58.375 37.037 0.00 0.00 0.00 1.75
1891 2063 9.177608 CCCAGTCTCACTTTTATGATTTTATCA 57.822 33.333 0.00 0.00 44.55 2.15
1892 2064 9.994432 CCAGTCTCACTTTTATGATTTTATCAC 57.006 33.333 0.00 0.00 43.01 3.06
1954 2126 1.065600 CAGGGTGTTTGTGGTTGCG 59.934 57.895 0.00 0.00 0.00 4.85
1963 2135 0.249657 TTGTGGTTGCGAATTTGCCC 60.250 50.000 15.20 10.25 0.00 5.36
1998 2170 0.593128 ATTTGTCGCCAACTGTGCTC 59.407 50.000 0.00 0.00 0.00 4.26
2001 2173 1.005630 GTCGCCAACTGTGCTCTCT 60.006 57.895 0.00 0.00 0.00 3.10
2016 2188 2.464865 CTCTCTCTACGCCCGAAAATG 58.535 52.381 0.00 0.00 0.00 2.32
2038 2211 4.700213 TGGGAAAGCTGCTTTAGATGTTAC 59.300 41.667 26.08 11.79 33.49 2.50
2039 2212 4.201822 GGGAAAGCTGCTTTAGATGTTACG 60.202 45.833 26.08 0.00 33.49 3.18
2244 2423 9.543231 TTGATAAATATATTCTACTCCCTCCGT 57.457 33.333 0.00 0.00 0.00 4.69
2245 2424 9.543231 TGATAAATATATTCTACTCCCTCCGTT 57.457 33.333 0.00 0.00 0.00 4.44
2247 2426 6.854091 AATATATTCTACTCCCTCCGTTCC 57.146 41.667 0.00 0.00 0.00 3.62
2248 2427 2.850695 ATTCTACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
2249 2428 3.967467 ATTCTACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
2250 2429 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
2251 2430 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
2252 2431 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
2253 2432 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
2254 2433 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
2255 2434 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
2256 2435 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
2257 2436 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2258 2437 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2259 2438 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2260 2439 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2261 2440 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2262 2441 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2263 2442 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2264 2443 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2281 2460 9.847224 AAGTCTTTTTAGAGATTCCACTACAAA 57.153 29.630 0.00 0.00 0.00 2.83
2282 2461 9.274206 AGTCTTTTTAGAGATTCCACTACAAAC 57.726 33.333 0.00 0.00 0.00 2.93
2283 2462 9.274206 GTCTTTTTAGAGATTCCACTACAAACT 57.726 33.333 0.00 0.00 0.00 2.66
2290 2469 7.481642 AGAGATTCCACTACAAACTACATACG 58.518 38.462 0.00 0.00 0.00 3.06
2291 2470 6.570692 AGATTCCACTACAAACTACATACGG 58.429 40.000 0.00 0.00 0.00 4.02
2292 2471 5.726980 TTCCACTACAAACTACATACGGT 57.273 39.130 0.00 0.00 0.00 4.83
2293 2472 5.726980 TCCACTACAAACTACATACGGTT 57.273 39.130 0.00 0.00 0.00 4.44
2294 2473 5.472148 TCCACTACAAACTACATACGGTTG 58.528 41.667 0.00 0.00 0.00 3.77
2295 2474 5.010922 TCCACTACAAACTACATACGGTTGT 59.989 40.000 0.00 0.00 37.04 3.32
2296 2475 6.208402 TCCACTACAAACTACATACGGTTGTA 59.792 38.462 0.00 0.00 34.29 2.41
2297 2476 7.037438 CCACTACAAACTACATACGGTTGTAT 58.963 38.462 1.67 0.00 42.03 2.29
2298 2477 8.190122 CCACTACAAACTACATACGGTTGTATA 58.810 37.037 1.67 0.00 39.28 1.47
2299 2478 9.740239 CACTACAAACTACATACGGTTGTATAT 57.260 33.333 1.67 0.00 39.28 0.86
2303 2482 9.956720 ACAAACTACATACGGTTGTATATAGAC 57.043 33.333 7.52 0.00 39.42 2.59
2304 2483 9.955208 CAAACTACATACGGTTGTATATAGACA 57.045 33.333 7.52 0.00 39.42 3.41
2335 2514 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
2336 2515 8.345724 AGAGTGTAGATTCATTCATTTTGCTT 57.654 30.769 0.00 0.00 0.00 3.91
2337 2516 8.457261 AGAGTGTAGATTCATTCATTTTGCTTC 58.543 33.333 0.00 0.00 0.00 3.86
2338 2517 7.246311 AGTGTAGATTCATTCATTTTGCTTCG 58.754 34.615 0.00 0.00 0.00 3.79
2339 2518 7.023575 GTGTAGATTCATTCATTTTGCTTCGT 58.976 34.615 0.00 0.00 0.00 3.85
2340 2519 8.175069 GTGTAGATTCATTCATTTTGCTTCGTA 58.825 33.333 0.00 0.00 0.00 3.43
2341 2520 8.892723 TGTAGATTCATTCATTTTGCTTCGTAT 58.107 29.630 0.00 0.00 0.00 3.06
2342 2521 9.162793 GTAGATTCATTCATTTTGCTTCGTATG 57.837 33.333 0.00 0.00 0.00 2.39
2343 2522 7.765307 AGATTCATTCATTTTGCTTCGTATGT 58.235 30.769 0.00 0.00 0.00 2.29
2344 2523 8.892723 AGATTCATTCATTTTGCTTCGTATGTA 58.107 29.630 0.00 0.00 0.00 2.29
2345 2524 9.162793 GATTCATTCATTTTGCTTCGTATGTAG 57.837 33.333 0.00 0.00 0.00 2.74
2346 2525 7.609760 TCATTCATTTTGCTTCGTATGTAGT 57.390 32.000 0.00 0.00 0.00 2.73
2347 2526 7.684670 TCATTCATTTTGCTTCGTATGTAGTC 58.315 34.615 0.00 0.00 0.00 2.59
2348 2527 6.417191 TTCATTTTGCTTCGTATGTAGTCC 57.583 37.500 0.00 0.00 0.00 3.85
2349 2528 5.483811 TCATTTTGCTTCGTATGTAGTCCA 58.516 37.500 0.00 0.00 0.00 4.02
2350 2529 6.112734 TCATTTTGCTTCGTATGTAGTCCAT 58.887 36.000 0.00 0.00 37.58 3.41
2351 2530 7.269316 TCATTTTGCTTCGTATGTAGTCCATA 58.731 34.615 0.00 0.00 34.86 2.74
2352 2531 7.766738 TCATTTTGCTTCGTATGTAGTCCATAA 59.233 33.333 0.00 0.00 37.77 1.90
2353 2532 8.559536 CATTTTGCTTCGTATGTAGTCCATAAT 58.440 33.333 0.00 0.00 37.77 1.28
2354 2533 7.477144 TTTGCTTCGTATGTAGTCCATAATG 57.523 36.000 0.00 0.00 37.77 1.90
2355 2534 5.538118 TGCTTCGTATGTAGTCCATAATGG 58.462 41.667 0.00 0.00 37.77 3.16
2356 2535 5.303333 TGCTTCGTATGTAGTCCATAATGGA 59.697 40.000 0.00 0.00 45.98 3.41
2389 2568 5.820404 AGACTTATATTTAGGAACGGGGG 57.180 43.478 0.00 0.00 0.00 5.40
2622 2801 6.500589 TTATCCTTTAGTAGCCTGATTGCT 57.499 37.500 0.00 0.00 45.38 3.91
2768 2973 2.844122 AACTTCAAAGCACGGTGAAC 57.156 45.000 13.29 0.00 30.73 3.18
2844 3050 5.762045 CAGTGTTTCCTTTGATGATTCGTT 58.238 37.500 0.00 0.00 0.00 3.85
2856 3062 2.143122 TGATTCGTTTGAGCCTGTCAC 58.857 47.619 0.00 0.00 33.71 3.67
2939 3173 3.694072 TCTTGTTGTGTTCAAGGTTCAGG 59.306 43.478 5.95 0.00 41.52 3.86
2978 3213 4.751060 TGCTAAGTCAGGGTATTACAACG 58.249 43.478 0.00 0.00 0.00 4.10
2988 3223 3.440872 GGGTATTACAACGTTTGATGCCA 59.559 43.478 17.88 0.00 0.00 4.92
2994 3229 2.622942 ACAACGTTTGATGCCATGTCTT 59.377 40.909 0.00 0.00 0.00 3.01
3051 3286 1.610038 CTTCAGTTGGAACAGCATGCA 59.390 47.619 21.98 0.00 43.86 3.96
3065 3300 1.202486 GCATGCATGGGGTGAATCTTG 60.202 52.381 27.34 0.00 0.00 3.02
3366 3601 0.790814 GACACTGTCGCTACAAAGGC 59.209 55.000 0.00 0.00 34.49 4.35
3396 3633 2.089980 GACGGCCAGTAAGTAGAGACA 58.910 52.381 2.24 0.00 0.00 3.41
3566 3803 1.415659 TGTGGAAGTGGCAAAAATGGG 59.584 47.619 0.00 0.00 0.00 4.00
3567 3804 1.416030 GTGGAAGTGGCAAAAATGGGT 59.584 47.619 0.00 0.00 0.00 4.51
3623 3860 4.503910 TGTACGCTTCAGAATTGTGCTAT 58.496 39.130 0.00 0.00 0.00 2.97
3728 4007 2.107366 TGTCCATGATGAGCCGTTCTA 58.893 47.619 0.00 0.00 0.00 2.10
3762 4042 8.633075 AACAAAATTGTCAATGTGTTGTAGAG 57.367 30.769 19.66 1.05 41.31 2.43
3773 4053 2.105993 GTGTTGTAGAGGGGAACTTGGT 59.894 50.000 0.00 0.00 0.00 3.67
3798 4078 0.034477 GGGGGAAAAGAATGCTCGGA 60.034 55.000 0.00 0.00 0.00 4.55
3814 4094 0.663688 CGGAGAGGGATCGTGTACAG 59.336 60.000 0.00 0.00 0.00 2.74
3815 4095 1.765230 GGAGAGGGATCGTGTACAGT 58.235 55.000 0.00 0.00 0.00 3.55
3816 4096 2.744166 CGGAGAGGGATCGTGTACAGTA 60.744 54.545 0.00 0.00 0.00 2.74
3817 4097 2.617774 GGAGAGGGATCGTGTACAGTAC 59.382 54.545 3.49 3.49 0.00 2.73
3818 4098 3.276857 GAGAGGGATCGTGTACAGTACA 58.723 50.000 9.51 9.51 36.08 2.90
3842 4389 7.174946 ACAGTAGTTGATAAAACCAATGTGGAG 59.825 37.037 0.18 0.00 40.96 3.86
3896 4449 9.593134 TCTTCTTTAGAAATGATCTCTAAGCAC 57.407 33.333 0.00 0.00 39.71 4.40
3899 4452 9.896645 TCTTTAGAAATGATCTCTAAGCACAAT 57.103 29.630 0.00 0.00 39.71 2.71
3910 4463 3.745975 TCTAAGCACAATTTGTCTCACCG 59.254 43.478 0.00 0.00 0.00 4.94
3911 4464 1.238439 AGCACAATTTGTCTCACCGG 58.762 50.000 0.00 0.00 0.00 5.28
4033 4613 8.947115 AGATAAAACTATCTTGTAAACCACTGC 58.053 33.333 0.00 0.00 33.27 4.40
4035 4615 5.941948 AACTATCTTGTAAACCACTGCAC 57.058 39.130 0.00 0.00 0.00 4.57
4062 4642 8.588290 TGCCCTAAGACAATAAAAACATATGT 57.412 30.769 1.41 1.41 0.00 2.29
4064 4644 9.946165 GCCCTAAGACAATAAAAACATATGTAC 57.054 33.333 9.21 0.00 0.00 2.90
4102 4698 7.106239 CCTAAGTATGTGGTGAGAGAAATTGT 58.894 38.462 0.00 0.00 0.00 2.71
4107 4703 4.713553 TGTGGTGAGAGAAATTGTGCTAA 58.286 39.130 0.00 0.00 0.00 3.09
4111 4707 4.633565 GGTGAGAGAAATTGTGCTAAGAGG 59.366 45.833 0.00 0.00 0.00 3.69
4164 4760 4.543590 TTTCATGGTCTCTCTCCTTCAC 57.456 45.455 0.00 0.00 0.00 3.18
4175 4771 6.983890 GTCTCTCTCCTTCACCTAATCATTTC 59.016 42.308 0.00 0.00 0.00 2.17
4182 4778 7.967908 TCCTTCACCTAATCATTTCTCCTATC 58.032 38.462 0.00 0.00 0.00 2.08
4234 4830 3.058914 CGTCCTAAGTGCAAGAAACAAGG 60.059 47.826 0.00 0.00 0.00 3.61
4286 4882 6.464222 CATGAGGTCTAAGTCCTTACAAACA 58.536 40.000 0.00 0.00 35.20 2.83
4296 4892 3.495753 GTCCTTACAAACACACCCTTACG 59.504 47.826 0.00 0.00 0.00 3.18
4297 4893 2.809696 CCTTACAAACACACCCTTACGG 59.190 50.000 0.00 0.00 37.81 4.02
4311 4907 6.016024 ACACCCTTACGGAAAAATAGGAAAAC 60.016 38.462 0.00 0.00 34.64 2.43
4312 4908 6.016108 CACCCTTACGGAAAAATAGGAAAACA 60.016 38.462 0.00 0.00 34.64 2.83
4313 4909 6.722590 ACCCTTACGGAAAAATAGGAAAACAT 59.277 34.615 0.00 0.00 34.64 2.71
4315 4911 7.758076 CCCTTACGGAAAAATAGGAAAACATTC 59.242 37.037 0.00 0.00 0.00 2.67
4316 4912 8.301002 CCTTACGGAAAAATAGGAAAACATTCA 58.699 33.333 0.00 0.00 0.00 2.57
4317 4913 9.685828 CTTACGGAAAAATAGGAAAACATTCAA 57.314 29.630 0.00 0.00 0.00 2.69
4319 4915 8.950208 ACGGAAAAATAGGAAAACATTCAAAA 57.050 26.923 0.00 0.00 0.00 2.44
4320 4916 9.554395 ACGGAAAAATAGGAAAACATTCAAAAT 57.446 25.926 0.00 0.00 0.00 1.82
4325 4921 9.981114 AAAATAGGAAAACATTCAAAATCGAGT 57.019 25.926 0.00 0.00 0.00 4.18
4326 4922 8.970691 AATAGGAAAACATTCAAAATCGAGTG 57.029 30.769 0.00 0.00 0.00 3.51
4327 4923 5.222631 AGGAAAACATTCAAAATCGAGTGC 58.777 37.500 0.00 0.00 0.00 4.40
4328 4924 4.385748 GGAAAACATTCAAAATCGAGTGCC 59.614 41.667 0.00 0.00 0.00 5.01
4329 4925 4.853924 AAACATTCAAAATCGAGTGCCT 57.146 36.364 0.00 0.00 0.00 4.75
4330 4926 5.957842 AAACATTCAAAATCGAGTGCCTA 57.042 34.783 0.00 0.00 0.00 3.93
4331 4927 5.957842 AACATTCAAAATCGAGTGCCTAA 57.042 34.783 0.00 0.00 0.00 2.69
4332 4928 5.957842 ACATTCAAAATCGAGTGCCTAAA 57.042 34.783 0.00 0.00 0.00 1.85
4333 4929 6.515272 ACATTCAAAATCGAGTGCCTAAAT 57.485 33.333 0.00 0.00 0.00 1.40
4334 4930 6.555315 ACATTCAAAATCGAGTGCCTAAATC 58.445 36.000 0.00 0.00 0.00 2.17
4335 4931 6.375455 ACATTCAAAATCGAGTGCCTAAATCT 59.625 34.615 0.00 0.00 0.00 2.40
4336 4932 6.817765 TTCAAAATCGAGTGCCTAAATCTT 57.182 33.333 0.00 0.00 0.00 2.40
4337 4933 6.817765 TCAAAATCGAGTGCCTAAATCTTT 57.182 33.333 0.00 0.00 0.00 2.52
4338 4934 7.214467 TCAAAATCGAGTGCCTAAATCTTTT 57.786 32.000 0.00 0.00 0.00 2.27
4339 4935 7.657336 TCAAAATCGAGTGCCTAAATCTTTTT 58.343 30.769 0.00 0.00 0.00 1.94
4340 4936 7.807907 TCAAAATCGAGTGCCTAAATCTTTTTC 59.192 33.333 0.00 0.00 0.00 2.29
4341 4937 7.454260 AAATCGAGTGCCTAAATCTTTTTCT 57.546 32.000 0.00 0.00 0.00 2.52
4342 4938 6.670077 ATCGAGTGCCTAAATCTTTTTCTC 57.330 37.500 0.00 0.00 0.00 2.87
4343 4939 4.935808 TCGAGTGCCTAAATCTTTTTCTCC 59.064 41.667 0.00 0.00 0.00 3.71
4344 4940 4.938226 CGAGTGCCTAAATCTTTTTCTCCT 59.062 41.667 0.00 0.00 0.00 3.69
4345 4941 6.070995 TCGAGTGCCTAAATCTTTTTCTCCTA 60.071 38.462 0.00 0.00 0.00 2.94
4346 4942 6.036191 CGAGTGCCTAAATCTTTTTCTCCTAC 59.964 42.308 0.00 0.00 0.00 3.18
4347 4943 6.779860 AGTGCCTAAATCTTTTTCTCCTACA 58.220 36.000 0.00 0.00 0.00 2.74
4348 4944 7.406104 AGTGCCTAAATCTTTTTCTCCTACAT 58.594 34.615 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 6.040166 GCTTGAATCATGTTGGTCCATAAGAT 59.960 38.462 0.00 0.00 0.00 2.40
69 70 1.055849 TAGCTGTGGTTCAGGCTTGA 58.944 50.000 0.00 0.00 43.78 3.02
149 150 1.498865 CGCCATCGCTAACCACATCC 61.499 60.000 0.00 0.00 0.00 3.51
249 263 1.685765 CTCCGTCATGTCTCCCCCA 60.686 63.158 0.00 0.00 0.00 4.96
337 386 2.431683 GACACTCCCCTGCAGCAA 59.568 61.111 8.66 0.00 0.00 3.91
361 410 1.469251 GCGGCGACAACTCAGATCTTA 60.469 52.381 12.98 0.00 0.00 2.10
362 411 0.737715 GCGGCGACAACTCAGATCTT 60.738 55.000 12.98 0.00 0.00 2.40
484 537 3.514362 CGGGGTGGCGCCAAATAC 61.514 66.667 34.66 19.31 39.65 1.89
509 564 1.580066 ATGGCGGGAGGGGAAAATCA 61.580 55.000 0.00 0.00 0.00 2.57
571 628 1.104630 AAGTGGGGCGAAAAACGAAA 58.895 45.000 0.00 0.00 45.77 3.46
580 637 1.192146 AGTCAAGCTAAGTGGGGCGA 61.192 55.000 0.00 0.00 0.00 5.54
590 647 0.108615 GCTTCCAGCGAGTCAAGCTA 60.109 55.000 5.19 0.00 44.06 3.32
624 681 3.991725 GAGCCTGGCTTGCTGGGAG 62.992 68.421 24.26 0.00 39.88 4.30
702 759 0.040351 TTGGGCGGGATGAAAATGGA 59.960 50.000 0.00 0.00 0.00 3.41
720 778 1.614317 GCATACAGCTCAACCAGGGTT 60.614 52.381 0.00 0.00 41.15 4.11
721 779 0.035056 GCATACAGCTCAACCAGGGT 60.035 55.000 0.00 0.00 41.15 4.34
745 803 2.047560 GCTAGGGACGCGTTTGGT 60.048 61.111 15.53 0.83 0.00 3.67
746 804 3.186047 CGCTAGGGACGCGTTTGG 61.186 66.667 15.53 5.75 45.13 3.28
799 858 9.408648 TGTGATCTCTCCTTAGTTTTTCTTTTT 57.591 29.630 0.00 0.00 0.00 1.94
800 859 8.980481 TGTGATCTCTCCTTAGTTTTTCTTTT 57.020 30.769 0.00 0.00 0.00 2.27
801 860 9.225436 GATGTGATCTCTCCTTAGTTTTTCTTT 57.775 33.333 0.00 0.00 0.00 2.52
802 861 8.601546 AGATGTGATCTCTCCTTAGTTTTTCTT 58.398 33.333 0.00 0.00 33.42 2.52
803 862 8.144862 AGATGTGATCTCTCCTTAGTTTTTCT 57.855 34.615 0.00 0.00 33.42 2.52
804 863 9.877178 TTAGATGTGATCTCTCCTTAGTTTTTC 57.123 33.333 0.00 0.00 40.76 2.29
808 867 8.646900 GGATTTAGATGTGATCTCTCCTTAGTT 58.353 37.037 0.00 0.00 40.76 2.24
809 868 7.786943 TGGATTTAGATGTGATCTCTCCTTAGT 59.213 37.037 0.00 0.00 40.76 2.24
810 869 8.187913 TGGATTTAGATGTGATCTCTCCTTAG 57.812 38.462 0.00 0.00 40.76 2.18
811 870 8.424918 GTTGGATTTAGATGTGATCTCTCCTTA 58.575 37.037 0.00 0.00 40.76 2.69
812 871 7.092712 TGTTGGATTTAGATGTGATCTCTCCTT 60.093 37.037 0.00 0.00 40.76 3.36
813 872 6.385176 TGTTGGATTTAGATGTGATCTCTCCT 59.615 38.462 0.00 0.00 40.76 3.69
814 873 6.586344 TGTTGGATTTAGATGTGATCTCTCC 58.414 40.000 0.00 0.00 40.76 3.71
815 874 7.271511 ACTGTTGGATTTAGATGTGATCTCTC 58.728 38.462 0.00 0.00 40.76 3.20
816 875 7.192852 ACTGTTGGATTTAGATGTGATCTCT 57.807 36.000 0.00 0.00 40.76 3.10
817 876 7.856145 AACTGTTGGATTTAGATGTGATCTC 57.144 36.000 0.00 0.00 40.76 2.75
818 877 8.517878 CAAAACTGTTGGATTTAGATGTGATCT 58.482 33.333 0.00 0.00 43.33 2.75
819 878 7.756722 CCAAAACTGTTGGATTTAGATGTGATC 59.243 37.037 0.00 0.00 42.06 2.92
820 879 7.451255 TCCAAAACTGTTGGATTTAGATGTGAT 59.549 33.333 3.67 0.00 43.17 3.06
821 880 6.775142 TCCAAAACTGTTGGATTTAGATGTGA 59.225 34.615 3.67 0.00 43.17 3.58
822 881 6.980593 TCCAAAACTGTTGGATTTAGATGTG 58.019 36.000 3.67 0.00 43.17 3.21
832 891 5.690865 ACATCTAAGTCCAAAACTGTTGGA 58.309 37.500 3.67 3.67 45.61 3.53
833 892 7.444183 TCTTACATCTAAGTCCAAAACTGTTGG 59.556 37.037 0.00 0.00 38.58 3.77
834 893 8.378172 TCTTACATCTAAGTCCAAAACTGTTG 57.622 34.615 0.00 0.00 38.58 3.33
843 902 9.352191 GGAGTACTTATCTTACATCTAAGTCCA 57.648 37.037 0.00 0.00 37.07 4.02
844 903 9.352191 TGGAGTACTTATCTTACATCTAAGTCC 57.648 37.037 0.00 0.00 37.07 3.85
849 908 9.862149 TCACATGGAGTACTTATCTTACATCTA 57.138 33.333 0.00 0.00 0.00 1.98
850 909 8.768501 TCACATGGAGTACTTATCTTACATCT 57.231 34.615 0.00 0.00 0.00 2.90
851 910 9.817809 TTTCACATGGAGTACTTATCTTACATC 57.182 33.333 0.00 0.00 0.00 3.06
855 914 9.982651 GCTATTTCACATGGAGTACTTATCTTA 57.017 33.333 0.00 0.00 0.00 2.10
856 915 8.486210 TGCTATTTCACATGGAGTACTTATCTT 58.514 33.333 0.00 0.00 0.00 2.40
857 916 8.023021 TGCTATTTCACATGGAGTACTTATCT 57.977 34.615 0.00 0.00 0.00 1.98
858 917 8.662781 TTGCTATTTCACATGGAGTACTTATC 57.337 34.615 0.00 0.00 0.00 1.75
859 918 9.461312 TTTTGCTATTTCACATGGAGTACTTAT 57.539 29.630 0.00 0.00 0.00 1.73
860 919 8.726988 GTTTTGCTATTTCACATGGAGTACTTA 58.273 33.333 0.00 0.00 0.00 2.24
861 920 7.448469 AGTTTTGCTATTTCACATGGAGTACTT 59.552 33.333 0.00 0.00 0.00 2.24
862 921 6.942576 AGTTTTGCTATTTCACATGGAGTACT 59.057 34.615 0.00 0.00 0.00 2.73
863 922 7.023575 CAGTTTTGCTATTTCACATGGAGTAC 58.976 38.462 0.00 0.00 0.00 2.73
864 923 6.714810 ACAGTTTTGCTATTTCACATGGAGTA 59.285 34.615 0.00 0.00 0.00 2.59
865 924 5.536161 ACAGTTTTGCTATTTCACATGGAGT 59.464 36.000 0.00 0.00 0.00 3.85
866 925 6.017400 ACAGTTTTGCTATTTCACATGGAG 57.983 37.500 0.00 0.00 0.00 3.86
867 926 7.517614 TTACAGTTTTGCTATTTCACATGGA 57.482 32.000 0.00 0.00 0.00 3.41
868 927 8.649841 CAATTACAGTTTTGCTATTTCACATGG 58.350 33.333 0.00 0.00 0.00 3.66
869 928 8.164153 GCAATTACAGTTTTGCTATTTCACATG 58.836 33.333 11.74 0.00 43.75 3.21
870 929 8.243289 GCAATTACAGTTTTGCTATTTCACAT 57.757 30.769 11.74 0.00 43.75 3.21
871 930 7.636259 GCAATTACAGTTTTGCTATTTCACA 57.364 32.000 11.74 0.00 43.75 3.58
880 939 7.692908 TTACAGAAAGCAATTACAGTTTTGC 57.307 32.000 11.26 11.26 46.68 3.68
881 940 9.683069 AGATTACAGAAAGCAATTACAGTTTTG 57.317 29.630 0.00 0.00 0.00 2.44
927 990 2.474410 AAGCTTAAAGGTGGAGACGG 57.526 50.000 0.00 0.00 0.00 4.79
929 992 3.751518 TGGAAAGCTTAAAGGTGGAGAC 58.248 45.455 0.00 0.00 0.00 3.36
932 995 3.831911 CCATTGGAAAGCTTAAAGGTGGA 59.168 43.478 0.00 0.00 0.00 4.02
947 1010 0.254747 CTTAGGGTTCCGCCATTGGA 59.745 55.000 6.95 0.00 39.65 3.53
1028 1091 2.509561 GGCGGACCTCGAGAAAGC 60.510 66.667 15.71 13.21 42.43 3.51
1505 1568 7.023575 ACAACTAATGCTGTCGAATTTTGATC 58.976 34.615 0.00 0.00 0.00 2.92
1530 1594 5.348986 GTCGCACTAATCAGTAAGATGGAA 58.651 41.667 0.00 0.00 36.96 3.53
1615 1679 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
1616 1680 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
1617 1681 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
1618 1682 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
1619 1683 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
1620 1684 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
1621 1685 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
1622 1686 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
1623 1687 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
1624 1688 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
1625 1689 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
1653 1717 3.800531 ACGTTTTTGGCACTACACTAGT 58.199 40.909 0.00 0.00 40.28 2.57
1654 1718 4.510340 AGAACGTTTTTGGCACTACACTAG 59.490 41.667 0.46 0.00 0.00 2.57
1655 1719 4.444536 AGAACGTTTTTGGCACTACACTA 58.555 39.130 0.46 0.00 0.00 2.74
1656 1720 3.275999 AGAACGTTTTTGGCACTACACT 58.724 40.909 0.46 0.00 0.00 3.55
1657 1721 3.685836 AGAACGTTTTTGGCACTACAC 57.314 42.857 0.46 0.00 0.00 2.90
1658 1722 7.675962 ATATAAGAACGTTTTTGGCACTACA 57.324 32.000 13.87 0.00 0.00 2.74
1661 1725 8.188139 CCATAATATAAGAACGTTTTTGGCACT 58.812 33.333 13.87 0.00 0.00 4.40
1662 1726 7.434013 CCCATAATATAAGAACGTTTTTGGCAC 59.566 37.037 13.87 0.00 0.00 5.01
1663 1727 7.339721 TCCCATAATATAAGAACGTTTTTGGCA 59.660 33.333 13.87 0.01 0.00 4.92
1664 1728 7.646526 GTCCCATAATATAAGAACGTTTTTGGC 59.353 37.037 13.87 0.00 0.00 4.52
1665 1729 7.853929 CGTCCCATAATATAAGAACGTTTTTGG 59.146 37.037 13.87 5.54 0.00 3.28
1666 1730 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
1667 1731 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
1668 1732 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
1669 1733 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
1670 1734 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
1671 1735 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
1672 1736 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
1673 1737 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
1674 1738 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
1675 1739 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1676 1740 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1677 1741 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1678 1742 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1679 1743 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1680 1744 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
1681 1745 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
1682 1746 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
1683 1747 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
1684 1748 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
1685 1749 1.229131 ATACTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
1686 1750 3.354467 CATATACTACTCCCTCCGTCCC 58.646 54.545 0.00 0.00 0.00 4.46
1687 1751 2.754002 GCATATACTACTCCCTCCGTCC 59.246 54.545 0.00 0.00 0.00 4.79
1688 1752 3.418995 TGCATATACTACTCCCTCCGTC 58.581 50.000 0.00 0.00 0.00 4.79
1689 1753 3.520691 TGCATATACTACTCCCTCCGT 57.479 47.619 0.00 0.00 0.00 4.69
1690 1754 4.580995 CCTATGCATATACTACTCCCTCCG 59.419 50.000 6.92 0.00 0.00 4.63
1691 1755 4.342665 GCCTATGCATATACTACTCCCTCC 59.657 50.000 6.92 0.00 37.47 4.30
1692 1756 5.068460 CAGCCTATGCATATACTACTCCCTC 59.932 48.000 6.92 0.00 41.13 4.30
1693 1757 4.959210 CAGCCTATGCATATACTACTCCCT 59.041 45.833 6.92 0.00 41.13 4.20
1694 1758 5.269505 CAGCCTATGCATATACTACTCCC 57.730 47.826 6.92 0.00 41.13 4.30
1737 1907 4.324402 CGCCAATCAATAGTTCAAACAAGC 59.676 41.667 0.00 0.00 0.00 4.01
1888 2060 9.727859 AACGAGACACTACTATATCTATGTGAT 57.272 33.333 0.00 0.00 39.11 3.06
1954 2126 2.071540 GCTGAAAAGCAGGGCAAATTC 58.928 47.619 0.00 0.00 45.03 2.17
1963 2135 4.317558 CGACAAATGTTTGCTGAAAAGCAG 60.318 41.667 5.44 0.00 46.21 4.24
1998 2170 1.571919 CCATTTTCGGGCGTAGAGAG 58.428 55.000 0.00 0.00 0.00 3.20
2001 2173 0.614294 TTCCCATTTTCGGGCGTAGA 59.386 50.000 0.00 0.00 46.92 2.59
2016 2188 4.201822 CGTAACATCTAAAGCAGCTTTCCC 60.202 45.833 23.94 3.85 35.21 3.97
2038 2211 0.613777 AGAAAGTTACAGGGAGGGCG 59.386 55.000 0.00 0.00 0.00 6.13
2039 2212 1.351350 ACAGAAAGTTACAGGGAGGGC 59.649 52.381 0.00 0.00 0.00 5.19
2235 2414 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2236 2415 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2237 2416 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2238 2417 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2255 2434 9.847224 TTTGTAGTGGAATCTCTAAAAAGACTT 57.153 29.630 0.00 0.00 28.58 3.01
2256 2435 9.274206 GTTTGTAGTGGAATCTCTAAAAAGACT 57.726 33.333 3.22 0.00 30.99 3.24
2257 2436 9.274206 AGTTTGTAGTGGAATCTCTAAAAAGAC 57.726 33.333 3.22 0.00 30.99 3.01
2264 2443 8.618677 CGTATGTAGTTTGTAGTGGAATCTCTA 58.381 37.037 0.00 0.00 0.00 2.43
2265 2444 7.416438 CCGTATGTAGTTTGTAGTGGAATCTCT 60.416 40.741 0.00 0.00 0.00 3.10
2266 2445 6.696148 CCGTATGTAGTTTGTAGTGGAATCTC 59.304 42.308 0.00 0.00 0.00 2.75
2267 2446 6.154021 ACCGTATGTAGTTTGTAGTGGAATCT 59.846 38.462 0.00 0.00 0.00 2.40
2268 2447 6.335777 ACCGTATGTAGTTTGTAGTGGAATC 58.664 40.000 0.00 0.00 0.00 2.52
2269 2448 6.290294 ACCGTATGTAGTTTGTAGTGGAAT 57.710 37.500 0.00 0.00 0.00 3.01
2270 2449 5.726980 ACCGTATGTAGTTTGTAGTGGAA 57.273 39.130 0.00 0.00 0.00 3.53
2271 2450 5.010922 ACAACCGTATGTAGTTTGTAGTGGA 59.989 40.000 0.00 0.00 0.00 4.02
2272 2451 5.232463 ACAACCGTATGTAGTTTGTAGTGG 58.768 41.667 0.00 0.00 0.00 4.00
2273 2452 9.740239 ATATACAACCGTATGTAGTTTGTAGTG 57.260 33.333 4.23 0.00 39.04 2.74
2277 2456 9.956720 GTCTATATACAACCGTATGTAGTTTGT 57.043 33.333 12.97 0.00 44.28 2.83
2278 2457 9.955208 TGTCTATATACAACCGTATGTAGTTTG 57.045 33.333 12.97 0.00 44.28 2.93
2309 2488 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
2310 2489 9.453572 AAGCAAAATGAATGAATCTACACTCTA 57.546 29.630 0.00 0.00 0.00 2.43
2311 2490 7.934855 AGCAAAATGAATGAATCTACACTCT 57.065 32.000 0.00 0.00 0.00 3.24
2312 2491 7.427606 CGAAGCAAAATGAATGAATCTACACTC 59.572 37.037 0.00 0.00 0.00 3.51
2313 2492 7.094634 ACGAAGCAAAATGAATGAATCTACACT 60.095 33.333 0.00 0.00 0.00 3.55
2314 2493 7.023575 ACGAAGCAAAATGAATGAATCTACAC 58.976 34.615 0.00 0.00 0.00 2.90
2315 2494 7.144722 ACGAAGCAAAATGAATGAATCTACA 57.855 32.000 0.00 0.00 0.00 2.74
2316 2495 9.162793 CATACGAAGCAAAATGAATGAATCTAC 57.837 33.333 0.00 0.00 0.00 2.59
2317 2496 8.892723 ACATACGAAGCAAAATGAATGAATCTA 58.107 29.630 0.00 0.00 0.00 1.98
2318 2497 7.765307 ACATACGAAGCAAAATGAATGAATCT 58.235 30.769 0.00 0.00 0.00 2.40
2319 2498 7.975866 ACATACGAAGCAAAATGAATGAATC 57.024 32.000 0.00 0.00 0.00 2.52
2320 2499 8.677300 ACTACATACGAAGCAAAATGAATGAAT 58.323 29.630 0.00 0.00 0.00 2.57
2321 2500 8.039603 ACTACATACGAAGCAAAATGAATGAA 57.960 30.769 0.00 0.00 0.00 2.57
2322 2501 7.201609 GGACTACATACGAAGCAAAATGAATGA 60.202 37.037 0.00 0.00 0.00 2.57
2323 2502 6.907212 GGACTACATACGAAGCAAAATGAATG 59.093 38.462 0.00 0.00 0.00 2.67
2324 2503 6.597672 TGGACTACATACGAAGCAAAATGAAT 59.402 34.615 0.00 0.00 0.00 2.57
2325 2504 5.935206 TGGACTACATACGAAGCAAAATGAA 59.065 36.000 0.00 0.00 0.00 2.57
2326 2505 5.483811 TGGACTACATACGAAGCAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
2327 2506 5.794687 TGGACTACATACGAAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
2328 2507 8.559536 CATTATGGACTACATACGAAGCAAAAT 58.440 33.333 0.00 0.00 41.61 1.82
2329 2508 7.011950 CCATTATGGACTACATACGAAGCAAAA 59.988 37.037 5.05 0.00 41.61 2.44
2330 2509 6.481976 CCATTATGGACTACATACGAAGCAAA 59.518 38.462 5.05 0.00 41.61 3.68
2331 2510 5.989168 CCATTATGGACTACATACGAAGCAA 59.011 40.000 5.05 0.00 41.61 3.91
2332 2511 5.303333 TCCATTATGGACTACATACGAAGCA 59.697 40.000 10.29 0.00 42.67 3.91
2333 2512 5.779922 TCCATTATGGACTACATACGAAGC 58.220 41.667 10.29 0.00 42.67 3.86
2363 2542 9.039165 CCCCCGTTCCTAAATATAAGTCTTATA 57.961 37.037 13.50 13.50 33.00 0.98
2364 2543 7.914859 CCCCCGTTCCTAAATATAAGTCTTAT 58.085 38.462 9.98 9.98 0.00 1.73
2365 2544 7.307131 CCCCCGTTCCTAAATATAAGTCTTA 57.693 40.000 0.00 0.00 0.00 2.10
2366 2545 6.183810 CCCCCGTTCCTAAATATAAGTCTT 57.816 41.667 0.00 0.00 0.00 3.01
2367 2546 5.820404 CCCCCGTTCCTAAATATAAGTCT 57.180 43.478 0.00 0.00 0.00 3.24
2386 2565 5.117406 GATTTCCATCCATATACTCCCCC 57.883 47.826 0.00 0.00 0.00 5.40
2539 2718 6.683974 ACATAATATGCCGCTTGATAATCC 57.316 37.500 0.00 0.00 0.00 3.01
2622 2801 3.756082 ATTTTGAAGAGGGGGCACATA 57.244 42.857 0.00 0.00 0.00 2.29
2682 2887 0.758310 TGGCCACCTTTGTTGCATCA 60.758 50.000 0.00 0.00 34.91 3.07
2683 2888 0.319813 GTGGCCACCTTTGTTGCATC 60.320 55.000 26.31 0.00 34.91 3.91
2764 2969 4.836736 ACCTAAGCTAACAGGTGTAGTTCA 59.163 41.667 12.51 0.00 43.64 3.18
2768 2973 5.887035 AGTAGACCTAAGCTAACAGGTGTAG 59.113 44.000 16.94 0.00 45.32 2.74
2844 3050 0.394192 CCTCACAGTGACAGGCTCAA 59.606 55.000 0.00 0.00 0.00 3.02
2939 3173 1.963515 AGCAACAATTTCCCACTGTCC 59.036 47.619 0.00 0.00 0.00 4.02
2978 3213 5.858581 GTCAGTAAAAGACATGGCATCAAAC 59.141 40.000 0.00 0.00 36.06 2.93
2994 3229 9.184523 CAAATACCCCAAGATAATGTCAGTAAA 57.815 33.333 0.00 0.00 0.00 2.01
3051 3286 3.833559 AGAAACCAAGATTCACCCCAT 57.166 42.857 0.00 0.00 0.00 4.00
3151 3386 0.541764 GCCCTGGTTCCCATGTTCAA 60.542 55.000 0.00 0.00 30.82 2.69
3496 3733 2.421775 ACACAGAGATGAGAGCTACACG 59.578 50.000 0.00 0.00 0.00 4.49
3566 3803 3.512516 GGCTGCTCCATGCCGAAC 61.513 66.667 0.00 0.00 42.00 3.95
3623 3860 9.244799 CGCACTTGTATAGACATTATTGACTTA 57.755 33.333 0.00 0.00 34.86 2.24
3762 4042 1.338107 CCCTTTTCACCAAGTTCCCC 58.662 55.000 0.00 0.00 0.00 4.81
3773 4053 3.578282 GAGCATTCTTTTCCCCCTTTTCA 59.422 43.478 0.00 0.00 0.00 2.69
3798 4078 3.280295 CTGTACTGTACACGATCCCTCT 58.720 50.000 16.26 0.00 34.46 3.69
3814 4094 8.234546 CCACATTGGTTTTATCAACTACTGTAC 58.765 37.037 0.00 0.00 31.35 2.90
3815 4095 8.158132 TCCACATTGGTTTTATCAACTACTGTA 58.842 33.333 0.00 0.00 39.03 2.74
3816 4096 7.001674 TCCACATTGGTTTTATCAACTACTGT 58.998 34.615 0.00 0.00 39.03 3.55
3817 4097 7.362056 CCTCCACATTGGTTTTATCAACTACTG 60.362 40.741 0.00 0.00 39.03 2.74
3818 4098 6.659242 CCTCCACATTGGTTTTATCAACTACT 59.341 38.462 0.00 0.00 39.03 2.57
3836 4383 8.609617 TTCTTATAATTTCTCTCTCCTCCACA 57.390 34.615 0.00 0.00 0.00 4.17
3864 4411 9.651913 AGAGATCATTTCTAAAGAAGACAAGTC 57.348 33.333 0.00 0.00 33.74 3.01
3881 4434 7.609146 TGAGACAAATTGTGCTTAGAGATCATT 59.391 33.333 2.20 0.00 0.00 2.57
3891 4444 1.608590 CCGGTGAGACAAATTGTGCTT 59.391 47.619 2.20 0.00 0.00 3.91
3896 4449 6.072175 TCCTAAAAATCCGGTGAGACAAATTG 60.072 38.462 0.00 0.00 0.00 2.32
3899 4452 4.975631 TCCTAAAAATCCGGTGAGACAAA 58.024 39.130 0.00 0.00 0.00 2.83
4022 4602 0.243636 GGGCATGTGCAGTGGTTTAC 59.756 55.000 7.36 0.00 44.36 2.01
4024 4604 0.112218 TAGGGCATGTGCAGTGGTTT 59.888 50.000 7.36 0.00 44.36 3.27
4027 4607 0.035152 TCTTAGGGCATGTGCAGTGG 60.035 55.000 7.36 0.00 44.36 4.00
4033 4613 6.686630 TGTTTTTATTGTCTTAGGGCATGTG 58.313 36.000 0.00 0.00 0.00 3.21
4035 4615 9.467258 CATATGTTTTTATTGTCTTAGGGCATG 57.533 33.333 0.00 0.00 0.00 4.06
4064 4644 8.378565 ACCACATACTTAGGGATATCAAGAATG 58.621 37.037 4.83 1.86 0.00 2.67
4066 4646 7.567250 TCACCACATACTTAGGGATATCAAGAA 59.433 37.037 4.83 0.00 0.00 2.52
4072 4652 6.864421 TCTCTCACCACATACTTAGGGATAT 58.136 40.000 0.00 0.00 0.00 1.63
4087 4683 5.227569 TCTTAGCACAATTTCTCTCACCA 57.772 39.130 0.00 0.00 0.00 4.17
4145 4741 2.043664 AGGTGAAGGAGAGAGACCATGA 59.956 50.000 0.00 0.00 0.00 3.07
4146 4742 2.465813 AGGTGAAGGAGAGAGACCATG 58.534 52.381 0.00 0.00 0.00 3.66
4147 4743 2.938428 AGGTGAAGGAGAGAGACCAT 57.062 50.000 0.00 0.00 0.00 3.55
4148 4744 3.827817 TTAGGTGAAGGAGAGAGACCA 57.172 47.619 0.00 0.00 0.00 4.02
4149 4745 4.282496 TGATTAGGTGAAGGAGAGAGACC 58.718 47.826 0.00 0.00 0.00 3.85
4150 4746 6.478512 AATGATTAGGTGAAGGAGAGAGAC 57.521 41.667 0.00 0.00 0.00 3.36
4156 4752 6.245890 AGGAGAAATGATTAGGTGAAGGAG 57.754 41.667 0.00 0.00 0.00 3.69
4164 4760 9.790344 AAATGTCAGATAGGAGAAATGATTAGG 57.210 33.333 0.00 0.00 0.00 2.69
4191 4787 8.838365 AGGACGTGTACAATAGTTCTATCTTAG 58.162 37.037 0.00 0.00 0.00 2.18
4193 4789 7.642082 AGGACGTGTACAATAGTTCTATCTT 57.358 36.000 0.00 0.00 0.00 2.40
4194 4790 8.743085 TTAGGACGTGTACAATAGTTCTATCT 57.257 34.615 13.12 5.51 0.00 1.98
4195 4791 8.619546 ACTTAGGACGTGTACAATAGTTCTATC 58.380 37.037 13.12 0.00 0.00 2.08
4196 4792 8.404000 CACTTAGGACGTGTACAATAGTTCTAT 58.596 37.037 13.12 1.73 0.00 1.98
4197 4793 7.627088 GCACTTAGGACGTGTACAATAGTTCTA 60.627 40.741 0.00 4.29 34.91 2.10
4198 4794 6.618811 CACTTAGGACGTGTACAATAGTTCT 58.381 40.000 11.46 11.46 0.00 3.01
4199 4795 5.287992 GCACTTAGGACGTGTACAATAGTTC 59.712 44.000 0.00 0.00 34.91 3.01
4200 4796 5.166398 GCACTTAGGACGTGTACAATAGTT 58.834 41.667 0.00 0.00 34.91 2.24
4201 4797 4.219070 TGCACTTAGGACGTGTACAATAGT 59.781 41.667 0.00 0.00 34.91 2.12
4202 4798 4.740268 TGCACTTAGGACGTGTACAATAG 58.260 43.478 0.00 0.00 34.91 1.73
4203 4799 4.787260 TGCACTTAGGACGTGTACAATA 57.213 40.909 0.00 0.00 34.91 1.90
4204 4800 3.671008 TGCACTTAGGACGTGTACAAT 57.329 42.857 0.00 0.00 34.91 2.71
4205 4801 3.068448 TCTTGCACTTAGGACGTGTACAA 59.932 43.478 0.00 0.00 34.91 2.41
4206 4802 2.624364 TCTTGCACTTAGGACGTGTACA 59.376 45.455 0.00 0.00 34.91 2.90
4207 4803 3.293311 TCTTGCACTTAGGACGTGTAC 57.707 47.619 0.00 0.00 34.91 2.90
4214 4810 4.141482 ACTCCTTGTTTCTTGCACTTAGGA 60.141 41.667 0.00 0.00 0.00 2.94
4234 4830 0.384669 AGCGCCGACATTACCTACTC 59.615 55.000 2.29 0.00 0.00 2.59
4311 4907 6.789262 AGATTTAGGCACTCGATTTTGAATG 58.211 36.000 0.00 0.00 41.75 2.67
4312 4908 7.396540 AAGATTTAGGCACTCGATTTTGAAT 57.603 32.000 0.00 0.00 41.75 2.57
4313 4909 6.817765 AAGATTTAGGCACTCGATTTTGAA 57.182 33.333 0.00 0.00 41.75 2.69
4315 4911 7.809806 AGAAAAAGATTTAGGCACTCGATTTTG 59.190 33.333 0.00 0.00 41.75 2.44
4316 4912 7.886338 AGAAAAAGATTTAGGCACTCGATTTT 58.114 30.769 0.00 0.00 41.75 1.82
4317 4913 7.362142 GGAGAAAAAGATTTAGGCACTCGATTT 60.362 37.037 0.00 0.00 41.75 2.17
4318 4914 6.094186 GGAGAAAAAGATTTAGGCACTCGATT 59.906 38.462 0.00 0.00 41.75 3.34
4319 4915 5.586643 GGAGAAAAAGATTTAGGCACTCGAT 59.413 40.000 0.00 0.00 41.75 3.59
4320 4916 4.935808 GGAGAAAAAGATTTAGGCACTCGA 59.064 41.667 0.00 0.00 41.75 4.04
4321 4917 4.938226 AGGAGAAAAAGATTTAGGCACTCG 59.062 41.667 0.00 0.00 41.75 4.18
4322 4918 6.879458 TGTAGGAGAAAAAGATTTAGGCACTC 59.121 38.462 0.00 0.00 41.75 3.51
4323 4919 6.779860 TGTAGGAGAAAAAGATTTAGGCACT 58.220 36.000 0.00 0.00 46.37 4.40
4324 4920 7.631717 ATGTAGGAGAAAAAGATTTAGGCAC 57.368 36.000 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.