AutoCloner

Multiple sequence alignment - TraesCS7D01G298900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G298900	chr7D	100.000	5645	0	0	1	5645	378498083	378492439	0.000000e+00	10425.0
1	TraesCS7D01G298900	chr7D	90.000	90	5	3	1531	1618	305134740	305134827	4.620000e-21	113.0
2	TraesCS7D01G298900	chr7A	96.315	3853	119	17	3	3838	426807709	426803863	0.000000e+00	6307.0
3	TraesCS7D01G298900	chr7A	97.681	733	12	4	4381	5110	426803166	426802436	0.000000e+00	1254.0
4	TraesCS7D01G298900	chr7A	96.948	557	11	1	3836	4386	426803811	426803255	0.000000e+00	929.0
5	TraesCS7D01G298900	chr7A	95.979	373	10	3	5108	5477	426801223	426800853	8.090000e-168	601.0
6	TraesCS7D01G298900	chr7A	79.635	329	54	8	223	543	192620886	192621209	2.050000e-54	224.0
7	TraesCS7D01G298900	chr7A	98.347	121	1	1	5526	5645	426800850	426800730	1.590000e-50	211.0
8	TraesCS7D01G298900	chr7A	92.135	89	4	2	1531	1617	353917864	353917951	7.680000e-24	122.0
9	TraesCS7D01G298900	chr7B	95.665	3875	113	23	1	3838	373182405	373178549	0.000000e+00	6174.0
10	TraesCS7D01G298900	chr7B	91.928	1115	56	17	4381	5475	373177857	373176757	0.000000e+00	1530.0
11	TraesCS7D01G298900	chr7B	96.768	557	7	6	3836	4386	373178497	373177946	0.000000e+00	918.0
12	TraesCS7D01G298900	chr7B	89.474	133	8	2	5519	5645	373176646	373176514	4.530000e-36	163.0
13	TraesCS7D01G298900	chr7B	91.111	90	5	2	1531	1618	290078105	290078017	9.940000e-23	119.0
14	TraesCS7D01G298900	chr5D	79.104	536	96	10	34	559	520858809	520858280	6.960000e-94	355.0
15	TraesCS7D01G298900	chr5D	85.000	100	8	7	1523	1618	138468880	138468976	1.670000e-15	95.3
16	TraesCS7D01G298900	chr2D	77.697	547	104	14	89	622	469369507	469368966	9.130000e-83	318.0
17	TraesCS7D01G298900	chr3D	78.132	471	88	11	164	620	598487711	598488180	9.260000e-73	285.0
18	TraesCS7D01G298900	chr3D	91.489	47	4	0	26	72	598487636	598487682	1.310000e-06	65.8
19	TraesCS7D01G298900	chr1A	75.574	610	131	14	28	621	31961897	31961290	9.260000e-73	285.0
20	TraesCS7D01G298900	chr1D	77.863	393	76	10	29	416	27892035	27892421	3.400000e-57	233.0
21	TraesCS7D01G298900	chr1D	100.000	28	0	0	2751	2778	339734548	339734521	1.000000e-02	52.8
22	TraesCS7D01G298900	chr6D	74.513	565	102	25	34	586	303446155	303445621	2.060000e-49	207.0
23	TraesCS7D01G298900	chr2B	88.732	142	11	1	2772	2908	2619080	2618939	9.730000e-38	169.0
24	TraesCS7D01G298900	chr4A	75.342	292	54	14	37	321	595448521	595448241	2.140000e-24	124.0
25	TraesCS7D01G298900	chr5A	91.358	81	5	1	1540	1618	315267698	315267778	5.980000e-20	110.0
26	TraesCS7D01G298900	chr3B	77.128	188	35	6	401	583	740501589	740501773	1.000000e-17	102.0
27	TraesCS7D01G298900	chr3B	86.420	81	6	3	1540	1618	190470352	190470275	3.620000e-12	84.2
28	TraesCS7D01G298900	chr3A	87.209	86	6	3	1535	1618	147790966	147790884	6.020000e-15	93.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G298900	chr7D	378492439	378498083	5644	True	10425.00	10425	100.00000	1	5645	1	chr7D.!!$R1	5644
1	TraesCS7D01G298900	chr7A	426800730	426807709	6979	True	1860.40	6307	97.05400	3	5645	5	chr7A.!!$R1	5642
2	TraesCS7D01G298900	chr7B	373176514	373182405	5891	True	2196.25	6174	93.45875	1	5645	4	chr7B.!!$R2	5644
3	TraesCS7D01G298900	chr5D	520858280	520858809	529	True	355.00	355	79.10400	34	559	1	chr5D.!!$R1	525
4	TraesCS7D01G298900	chr2D	469368966	469369507	541	True	318.00	318	77.69700	89	622	1	chr2D.!!$R1	533
5	TraesCS7D01G298900	chr1A	31961290	31961897	607	True	285.00	285	75.57400	28	621	1	chr1A.!!$R1	593
6	TraesCS7D01G298900	chr6D	303445621	303446155	534	True	207.00	207	74.51300	34	586	1	chr6D.!!$R1	552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
832	849	0.169451	GGGGCACGAAATAAACACCG	59.831	55.000	0.00	4.94	F
1187	1204	0.323451	GCCAAGAACGGGGGAAGAAT	60.323	55.000	0.00	2.40	F
1974	2017	0.108585	TTGCAGACCACCCTTCTCAC	59.891	55.000	0.00	3.51	F
2746	2791	1.137675	TCTGCTGATCTCCATCGGTTG	59.862	52.381	37.68	3.77	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1974	2017	1.043116	TGATACAGTCCGCCTCTGGG	61.043	60.000	37.25	4.45	R
2770	2822	1.864711	TGAGTGCTACGCAGTTCAAAC	59.135	47.619	42.74	2.93	R
3319	3372	3.119779	AGAGCTACACGTACAGAAGAAGC	60.120	47.826	0.00	3.86	R
4673	4884	1.005630	GCTCGGAACTGTCAGCACT	60.006	57.895	0.00	4.40	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
99	101	3.465403	CGGTGAGAGGGCTCCTGG	61.465	72.222	0.00	0.00	40.55	4.45
112	114	2.025321	GGCTCCTGGTCCATTTTTAGGA	60.025	50.000	0.00	0.00	36.23	2.94
193	197	8.967918	GGCTCCCTATAGTTGAAATAAAGTTTT	58.032	33.333	0.00	0.00	0.00	2.43
363	367	5.397240	CGTTTACAGGTTGAATTTTTCCGAC	59.603	40.000	0.00	0.00	0.00	4.79
421	429	1.061905	TGGTCCTATGGGGCATGAGG	61.062	60.000	0.78	0.00	39.39	3.86
447	455	3.683822	ACGACTTTCCGACTGTCTACTAG	59.316	47.826	6.21	0.00	0.00	2.57
832	849	0.169451	GGGGCACGAAATAAACACCG	59.831	55.000	0.00	0.00	0.00	4.94
965	982	3.168292	TGAGAGGTGCTTCTTGATCTGA	58.832	45.455	0.00	0.00	0.00	3.27
1163	1180	3.253188	TGAAAATGTCCTTGCTTTCTCGG	59.747	43.478	0.00	0.00	0.00	4.63
1167	1184	2.751837	CCTTGCTTTCTCGGGGCC	60.752	66.667	0.00	0.00	0.00	5.80
1187	1204	0.323451	GCCAAGAACGGGGGAAGAAT	60.323	55.000	0.00	0.00	0.00	2.40
1204	1221	5.396548	GGAAGAATAGGAGGGGTAGTTCAAC	60.397	48.000	0.00	0.00	0.00	3.18
1307	1326	4.161333	GTGATTCATTTGCCAGACTTTCG	58.839	43.478	0.00	0.00	0.00	3.46
1329	1348	4.456535	GACCACTAGCTCTGAGATCTGTA	58.543	47.826	9.28	0.00	0.00	2.74
1467	1486	5.938125	GCTATGGTCACAAACTTTTCTCCTA	59.062	40.000	0.00	0.00	0.00	2.94
1546	1565	7.565323	AAACAAGTATAGTACTACCTCCGAG	57.435	40.000	4.31	0.00	38.26	4.63
1813	1856	7.910441	TGTATGTATCATCATATTGCAGGTG	57.090	36.000	0.00	0.00	33.68	4.00
1974	2017	0.108585	TTGCAGACCACCCTTCTCAC	59.891	55.000	0.00	0.00	0.00	3.51
2119	2162	4.389077	CGTAAAGTCCTTGTCATCCTGAAC	59.611	45.833	0.00	0.00	0.00	3.18
2171	2214	6.136541	AGGTTTTCTACAAGAAAGTGCAAG	57.863	37.500	0.00	0.00	44.14	4.01
2275	2319	4.929211	TCAGTTTCATGGTACTGATCGTTG	59.071	41.667	20.10	2.49	44.20	4.10
2288	2332	4.982916	ACTGATCGTTGTAGTTTCTGTCAC	59.017	41.667	0.00	0.00	0.00	3.67
2405	2450	6.430451	GCCGCATATGCCTGTAAAATATATC	58.570	40.000	21.77	0.00	37.91	1.63
2447	2492	7.481275	TTTTGAGTTTGAATTTTGATCTGGC	57.519	32.000	0.00	0.00	0.00	4.85
2557	2602	4.787135	TGCCCTGATGGTAATATCAACA	57.213	40.909	0.00	0.00	36.69	3.33
2746	2791	1.137675	TCTGCTGATCTCCATCGGTTG	59.862	52.381	0.00	0.00	37.68	3.77
2763	2815	7.114811	CCATCGGTTGTTATTTGAAGTTTGAAG	59.885	37.037	0.00	0.00	0.00	3.02
2764	2816	7.090953	TCGGTTGTTATTTGAAGTTTGAAGT	57.909	32.000	0.00	0.00	0.00	3.01
2765	2817	7.540299	TCGGTTGTTATTTGAAGTTTGAAGTT	58.460	30.769	0.00	0.00	0.00	2.66
2766	2818	8.030106	TCGGTTGTTATTTGAAGTTTGAAGTTT	58.970	29.630	0.00	0.00	0.00	2.66
2767	2819	8.107564	CGGTTGTTATTTGAAGTTTGAAGTTTG	58.892	33.333	0.00	0.00	0.00	2.93
2768	2820	9.145865	GGTTGTTATTTGAAGTTTGAAGTTTGA	57.854	29.630	0.00	0.00	0.00	2.69
3319	3372	6.149633	GGTTTTGTAGCTGATGGTAAGTTTG	58.850	40.000	0.00	0.00	0.00	2.93
3507	3560	4.130286	TGGTTTGGCTGTTGGTAAAAAG	57.870	40.909	0.00	0.00	0.00	2.27
3601	3654	7.309770	AGAAGGAATGACAGAACTTCTACTT	57.690	36.000	13.51	0.00	44.22	2.24
3610	3663	7.726216	TGACAGAACTTCTACTTTGATCTTGA	58.274	34.615	0.00	0.00	0.00	3.02
3648	3701	5.886960	ACAGAAATGCTCATGGTTCTTAC	57.113	39.130	0.00	0.00	0.00	2.34
3850	3959	6.176183	GCCACAGTTCCATAGCTATGATATT	58.824	40.000	31.14	14.32	35.75	1.28
4136	4251	5.611374	CACTGGAGATAATTGGGTTACGAT	58.389	41.667	0.00	0.00	0.00	3.73
4167	4282	3.706086	AGTTTCTTGGCATTTTGGTCTGT	59.294	39.130	0.00	0.00	0.00	3.41
4487	4698	3.331150	ACACTCGATTTTGCGACCATTA	58.669	40.909	0.00	0.00	36.17	1.90
4673	4884	4.380531	GTTTGTGACTCATCCAGAAGTCA	58.619	43.478	1.26	1.26	38.74	3.41
5055	5270	7.315142	CAAAATAAGCAAGGTTAGCTCAATGA	58.685	34.615	0.00	0.00	42.53	2.57
5095	5310	9.724839	GTAGACTATGAGAAACTGTATCTTGTC	57.275	37.037	0.00	0.00	0.00	3.18
5110	5325	8.208718	TGTATCTTGTCTTTATGCACCATTAC	57.791	34.615	0.00	0.00	0.00	1.89
5111	5326	8.046708	TGTATCTTGTCTTTATGCACCATTACT	58.953	33.333	0.00	0.00	0.00	2.24
5112	5327	6.985188	TCTTGTCTTTATGCACCATTACTC	57.015	37.500	0.00	0.00	0.00	2.59
5250	6679	3.366781	GGATTTGCAGAGCTTCCAACTTC	60.367	47.826	0.00	0.00	0.00	3.01
5278	6714	3.193691	ACCTCAACCAACTCTCGAGTATG	59.806	47.826	13.13	9.75	41.58	2.39
5400	6840	7.659390	ACAACTCTTCCAATTCTCTCAACTAAG	59.341	37.037	0.00	0.00	0.00	2.18
5401	6841	6.706295	ACTCTTCCAATTCTCTCAACTAAGG	58.294	40.000	0.00	0.00	0.00	2.69
5402	6842	6.498651	ACTCTTCCAATTCTCTCAACTAAGGA	59.501	38.462	0.00	0.00	0.00	3.36
5403	6843	6.702329	TCTTCCAATTCTCTCAACTAAGGAC	58.298	40.000	0.00	0.00	0.00	3.85
5404	6844	6.270000	TCTTCCAATTCTCTCAACTAAGGACA	59.730	38.462	0.00	0.00	0.00	4.02
5508	7026	5.129155	ACCCACCAAATATCCAATGTTCATG	59.871	40.000	0.00	0.00	0.00	3.07
5509	7027	5.051816	CCACCAAATATCCAATGTTCATGC	58.948	41.667	0.00	0.00	0.00	4.06
5510	7028	5.395435	CCACCAAATATCCAATGTTCATGCA	60.395	40.000	0.00	0.00	0.00	3.96
5511	7029	6.107343	CACCAAATATCCAATGTTCATGCAA	58.893	36.000	0.00	0.00	0.00	4.08
5512	7030	6.036300	CACCAAATATCCAATGTTCATGCAAC	59.964	38.462	0.00	0.00	35.28	4.17
5513	7031	5.524646	CCAAATATCCAATGTTCATGCAACC	59.475	40.000	0.00	0.00	33.51	3.77
5514	7032	4.942761	ATATCCAATGTTCATGCAACCC	57.057	40.909	0.00	0.00	33.51	4.11
5515	7033	2.006805	TCCAATGTTCATGCAACCCA	57.993	45.000	0.00	0.00	33.51	4.51
5516	7034	1.617850	TCCAATGTTCATGCAACCCAC	59.382	47.619	0.00	0.00	33.51	4.61
5517	7035	1.669502	CCAATGTTCATGCAACCCACG	60.670	52.381	0.00	0.00	33.51	4.94

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
193	197	1.304713	AACGAAGACTAGGCGGGGA	60.305	57.895	0.00	0.00	0.00	4.81
363	367	1.721389	CGTCACCGATGAACAGAAGTG	59.279	52.381	0.00	0.00	36.31	3.16
421	429	0.040603	ACAGTCGGAAAGTCGTCGTC	60.041	55.000	0.00	0.00	0.00	4.20
447	455	3.498397	TCATCGAAGCCTGACAAAACTTC	59.502	43.478	0.00	0.00	36.11	3.01
591	608	3.330267	GAGAACTTCCAATCTGCTCGTT	58.670	45.455	0.00	0.00	0.00	3.85
832	849	3.378399	GAGGAGAGGGGAAGCACGC	62.378	68.421	0.00	0.00	0.00	5.34
965	982	3.595758	GGCAACCGCACACAGCTT	61.596	61.111	0.00	0.00	42.61	3.74
1167	1184	2.741486	TTCTTCCCCCGTTCTTGGCG	62.741	60.000	0.00	0.00	0.00	5.69
1187	1204	5.160386	AGAAAAGTTGAACTACCCCTCCTA	58.840	41.667	0.00	0.00	0.00	2.94
1218	1237	6.013812	AGCAGAACAGTAGAAGAGGAGAATTT	60.014	38.462	0.00	0.00	0.00	1.82
1230	1249	3.969287	AATGCAGAGCAGAACAGTAGA	57.031	42.857	0.00	0.00	43.65	2.59
1307	1326	3.287222	ACAGATCTCAGAGCTAGTGGTC	58.713	50.000	0.00	0.00	40.70	4.02
1329	1348	2.304180	AGCCAGCAACTAGACACAAGAT	59.696	45.455	0.00	0.00	0.00	2.40
1539	1558	3.242739	CGTCAATTAATTTGGCTCGGAGG	60.243	47.826	7.20	0.00	37.81	4.30
1546	1565	2.879826	AGCTGCGTCAATTAATTTGGC	58.120	42.857	0.00	3.23	36.55	4.52
1583	1615	4.965062	TCCAAATTAATTGACGCGACTTC	58.035	39.130	15.93	0.00	41.85	3.01
1813	1856	3.293311	TCGTTTACAGCACTACAGGAC	57.707	47.619	0.00	0.00	0.00	3.85
1974	2017	1.043116	TGATACAGTCCGCCTCTGGG	61.043	60.000	0.00	0.00	37.25	4.45
2119	2162	3.325135	AGCTACGGAATCCAGAATTAGGG	59.675	47.826	0.00	0.00	0.00	3.53
2171	2214	4.083271	GGAACATCTTACCTTCAGTGTTGC	60.083	45.833	0.00	0.00	32.41	4.17
2244	2288	5.711976	CAGTACCATGAAACTGAAAGGGATT	59.288	40.000	17.69	0.00	44.79	3.01
2275	2319	7.548097	TCTCAATGGATAGTGACAGAAACTAC	58.452	38.462	0.00	0.00	33.11	2.73
2288	2332	4.999950	GGGCAATACACTCTCAATGGATAG	59.000	45.833	0.00	0.00	0.00	2.08
2405	2450	4.036734	TCAAAAGCACTCAGGTAGCAAAAG	59.963	41.667	0.00	0.00	0.00	2.27
2557	2602	4.681025	CACAATTGCAAAAACAGATACGCT	59.319	37.500	1.71	0.00	0.00	5.07
2763	2815	3.724257	GCTACGCAGTTCAAACTTCAAAC	59.276	43.478	0.00	0.00	37.78	2.93
2764	2816	3.375610	TGCTACGCAGTTCAAACTTCAAA	59.624	39.130	0.00	0.00	37.78	2.69
2765	2817	2.939756	TGCTACGCAGTTCAAACTTCAA	59.060	40.909	0.00	0.00	37.78	2.69
2766	2818	2.286833	GTGCTACGCAGTTCAAACTTCA	59.713	45.455	0.00	0.00	37.78	3.02
2767	2819	2.544267	AGTGCTACGCAGTTCAAACTTC	59.456	45.455	0.00	0.00	37.78	3.01
2768	2820	2.544267	GAGTGCTACGCAGTTCAAACTT	59.456	45.455	0.00	0.00	42.74	2.66
2769	2821	2.135933	GAGTGCTACGCAGTTCAAACT	58.864	47.619	0.00	0.00	42.74	2.66
2770	2822	1.864711	TGAGTGCTACGCAGTTCAAAC	59.135	47.619	0.00	0.00	42.74	2.93
2930	2982	5.929992	CGTCTCTACCAAGTAAACCATTCAA	59.070	40.000	0.00	0.00	0.00	2.69
3319	3372	3.119779	AGAGCTACACGTACAGAAGAAGC	60.120	47.826	0.00	0.00	0.00	3.86
3436	3489	3.125316	CGAAGACAATACCTTCCACAAGC	59.875	47.826	0.00	0.00	37.36	4.01
3507	3560	8.940952	ACAAACAAAGTCTCTTCTATTCATAGC	58.059	33.333	0.00	0.00	0.00	2.97
3601	3654	9.778741	GTAATCCCACATAGTTATCAAGATCAA	57.221	33.333	0.00	0.00	0.00	2.57
3610	3663	8.220559	AGCATTTCTGTAATCCCACATAGTTAT	58.779	33.333	0.00	0.00	0.00	1.89
4136	4251	1.216678	TGCCAAGAAACTCCCCTTTCA	59.783	47.619	0.00	0.00	33.26	2.69
4167	4282	1.896220	CAGGCTTGCAGAAGTGGTTA	58.104	50.000	0.00	0.00	0.00	2.85
4673	4884	1.005630	GCTCGGAACTGTCAGCACT	60.006	57.895	0.00	0.00	0.00	4.40
5055	5270	8.812972	TCTCATAGTCTACATTTAGTTGTGGTT	58.187	33.333	0.00	0.00	30.79	3.67
5095	5310	4.889409	ACATGGGAGTAATGGTGCATAAAG	59.111	41.667	0.00	0.00	0.00	1.85
5110	5325	7.148239	GGAGTTTTAGTGAAATGTACATGGGAG	60.148	40.741	9.63	0.00	0.00	4.30
5111	5326	6.657541	GGAGTTTTAGTGAAATGTACATGGGA	59.342	38.462	9.63	0.00	0.00	4.37
5112	5327	6.127730	GGGAGTTTTAGTGAAATGTACATGGG	60.128	42.308	9.63	0.00	0.00	4.00
5250	6679	0.602905	GAGTTGGTTGAGGTCCCACG	60.603	60.000	0.00	0.00	0.00	4.94
5278	6714	8.696410	TTTTCCGCTTCATTTAAATGGTTATC	57.304	30.769	24.40	10.92	37.03	1.75
5440	6881	5.067283	TGGTTCACTTTTGTCCTCTTTTAGC	59.933	40.000	0.00	0.00	0.00	3.09
5483	7001	4.709397	TGAACATTGGATATTTGGTGGGTC	59.291	41.667	0.00	0.00	0.00	4.46
5485	7003	5.603596	CATGAACATTGGATATTTGGTGGG	58.396	41.667	0.00	0.00	0.00	4.61
5498	7016	1.700523	CGTGGGTTGCATGAACATTG	58.299	50.000	0.00	0.00	36.12	2.82
5499	7017	0.038343	GCGTGGGTTGCATGAACATT	60.038	50.000	0.00	0.00	36.12	2.71
5508	7026	1.212751	GGATTGAAGCGTGGGTTGC	59.787	57.895	0.00	0.00	0.00	4.17
5509	7027	2.107950	TAGGATTGAAGCGTGGGTTG	57.892	50.000	0.00	0.00	0.00	3.77
5510	7028	4.706842	ATATAGGATTGAAGCGTGGGTT	57.293	40.909	0.00	0.00	0.00	4.11
5511	7029	4.706842	AATATAGGATTGAAGCGTGGGT	57.293	40.909	0.00	0.00	0.00	4.51
5512	7030	4.821805	ACAAATATAGGATTGAAGCGTGGG	59.178	41.667	3.50	0.00	0.00	4.61
5513	7031	5.751680	CACAAATATAGGATTGAAGCGTGG	58.248	41.667	3.50	0.00	0.00	4.94
5514	7032	5.008019	AGCACAAATATAGGATTGAAGCGTG	59.992	40.000	3.50	0.00	36.75	5.34
5515	7033	5.126067	AGCACAAATATAGGATTGAAGCGT	58.874	37.500	3.50	0.00	36.75	5.07
5516	7034	5.679734	AGCACAAATATAGGATTGAAGCG	57.320	39.130	3.50	0.00	36.75	4.68
5517	7035	6.936900	TCCTAGCACAAATATAGGATTGAAGC	59.063	38.462	0.00	6.37	40.09	3.86

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.