Multiple sequence alignment - TraesCS7D01G298500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G298500 chr7D 100.000 3490 0 0 1 3490 378163455 378166944 0.000000e+00 6445
1 TraesCS7D01G298500 chr7D 94.776 268 11 3 402 668 312561596 312561331 6.970000e-112 414
2 TraesCS7D01G298500 chr4D 98.804 3094 31 4 402 3490 208393825 208390733 0.000000e+00 5504
3 TraesCS7D01G298500 chr4D 97.741 2568 54 2 926 3490 471709689 471707123 0.000000e+00 4418
4 TraesCS7D01G298500 chr4D 97.514 2574 59 3 921 3490 266124206 266126778 0.000000e+00 4394
5 TraesCS7D01G298500 chr4D 89.736 341 16 11 402 726 282074029 282074366 5.390000e-113 418
6 TraesCS7D01G298500 chr4D 92.734 289 11 5 401 686 472678639 472678358 3.240000e-110 409
7 TraesCS7D01G298500 chr4D 92.683 287 12 5 402 682 266123643 266123926 4.190000e-109 405
8 TraesCS7D01G298500 chr2D 98.292 2576 38 5 917 3490 196351678 196354249 0.000000e+00 4508
9 TraesCS7D01G298500 chr2D 94.361 266 11 3 402 664 260026431 260026167 4.190000e-109 405
10 TraesCS7D01G298500 chr2D 94.030 268 12 3 400 664 62399570 62399304 1.510000e-108 403
11 TraesCS7D01G298500 chr2D 80.473 169 24 7 751 915 440964941 440964778 1.700000e-23 121
12 TraesCS7D01G298500 chr3D 97.939 2572 51 2 921 3490 239610149 239607578 0.000000e+00 4455
13 TraesCS7D01G298500 chr3D 97.048 2608 63 11 893 3490 540242894 540245497 0.000000e+00 4377
14 TraesCS7D01G298500 chr3D 91.579 285 18 5 402 683 196968646 196968365 4.220000e-104 388
15 TraesCS7D01G298500 chrUn 97.778 2565 55 2 926 3490 211163660 211161098 0.000000e+00 4420
16 TraesCS7D01G298500 chrUn 89.820 167 10 4 242 401 10263985 10263819 1.270000e-49 207
17 TraesCS7D01G298500 chr1D 97.586 2568 56 4 927 3490 386466778 386469343 0.000000e+00 4394
18 TraesCS7D01G298500 chr1D 92.096 291 15 6 402 685 485036642 485036353 1.510000e-108 403
19 TraesCS7D01G298500 chr1D 88.024 167 13 6 242 401 419720682 419720516 1.280000e-44 191
20 TraesCS7D01G298500 chr6D 97.430 2568 61 3 926 3490 86887455 86890020 0.000000e+00 4372
21 TraesCS7D01G298500 chr7B 97.756 401 7 1 1 401 372827403 372827801 0.000000e+00 689
22 TraesCS7D01G298500 chr7B 87.425 167 14 7 242 401 648693785 648693951 5.950000e-43 185
23 TraesCS7D01G298500 chr7A 96.766 402 9 4 3 401 425782853 425783253 0.000000e+00 667
24 TraesCS7D01G298500 chr5D 99.405 168 1 0 756 923 231628897 231629064 4.380000e-79 305
25 TraesCS7D01G298500 chr5B 91.667 192 12 4 732 923 91444148 91444335 2.670000e-66 263
26 TraesCS7D01G298500 chr6B 91.146 192 13 4 732 923 42889380 42889193 1.240000e-64 257
27 TraesCS7D01G298500 chr4B 90.361 166 10 5 242 401 456917321 456917156 2.730000e-51 213
28 TraesCS7D01G298500 chr1B 89.820 167 9 6 242 401 566825666 566825501 1.270000e-49 207
29 TraesCS7D01G298500 chr1B 88.095 168 11 6 242 401 566827614 566827448 1.280000e-44 191
30 TraesCS7D01G298500 chr3A 89.222 167 11 3 242 401 575406491 575406657 5.910000e-48 202
31 TraesCS7D01G298500 chr3A 87.429 175 19 2 732 905 535309154 535309326 7.640000e-47 198
32 TraesCS7D01G298500 chr3B 89.167 120 9 3 732 850 537567188 537567072 2.810000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G298500 chr7D 378163455 378166944 3489 False 6445.0 6445 100.0000 1 3490 1 chr7D.!!$F1 3489
1 TraesCS7D01G298500 chr4D 208390733 208393825 3092 True 5504.0 5504 98.8040 402 3490 1 chr4D.!!$R1 3088
2 TraesCS7D01G298500 chr4D 471707123 471709689 2566 True 4418.0 4418 97.7410 926 3490 1 chr4D.!!$R2 2564
3 TraesCS7D01G298500 chr4D 266123643 266126778 3135 False 2399.5 4394 95.0985 402 3490 2 chr4D.!!$F2 3088
4 TraesCS7D01G298500 chr2D 196351678 196354249 2571 False 4508.0 4508 98.2920 917 3490 1 chr2D.!!$F1 2573
5 TraesCS7D01G298500 chr3D 239607578 239610149 2571 True 4455.0 4455 97.9390 921 3490 1 chr3D.!!$R2 2569
6 TraesCS7D01G298500 chr3D 540242894 540245497 2603 False 4377.0 4377 97.0480 893 3490 1 chr3D.!!$F1 2597
7 TraesCS7D01G298500 chrUn 211161098 211163660 2562 True 4420.0 4420 97.7780 926 3490 1 chrUn.!!$R2 2564
8 TraesCS7D01G298500 chr1D 386466778 386469343 2565 False 4394.0 4394 97.5860 927 3490 1 chr1D.!!$F1 2563
9 TraesCS7D01G298500 chr6D 86887455 86890020 2565 False 4372.0 4372 97.4300 926 3490 1 chr6D.!!$F1 2564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.037590 TCATTTGGTTGCGGCCTACT 59.962 50.0 0.00 0.00 0.0 2.57 F
261 262 0.688487 TTTGGTTGCGGCCTACTAGT 59.312 50.0 0.00 0.00 0.0 2.57 F
263 264 1.108776 TGGTTGCGGCCTACTAGTAG 58.891 55.0 21.11 21.11 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 1812 0.611714 GGGGCTCAAACTCCTTACGA 59.388 55.000 0.00 0.0 0.00 3.43 R
1847 1985 1.139734 GCACTCGAGCGAGAATGGA 59.860 57.895 24.81 0.0 44.53 3.41 R
2494 2638 1.897802 GTCCAACTCCGAAAGACCCTA 59.102 52.381 0.00 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.056092 AGTAATAGGCGGTAGTTTCTGC 57.944 45.455 0.00 0.00 38.81 4.26
25 26 3.705072 AGTAATAGGCGGTAGTTTCTGCT 59.295 43.478 0.00 0.00 39.41 4.24
26 27 2.892784 ATAGGCGGTAGTTTCTGCTC 57.107 50.000 0.00 0.00 39.41 4.26
27 28 1.552578 TAGGCGGTAGTTTCTGCTCA 58.447 50.000 0.00 0.00 39.41 4.26
28 29 0.685097 AGGCGGTAGTTTCTGCTCAA 59.315 50.000 0.00 0.00 39.41 3.02
30 31 1.608283 GGCGGTAGTTTCTGCTCAAGT 60.608 52.381 0.00 0.00 39.41 3.16
31 32 1.727335 GCGGTAGTTTCTGCTCAAGTC 59.273 52.381 0.00 0.00 36.83 3.01
33 34 2.288825 CGGTAGTTTCTGCTCAAGTCCA 60.289 50.000 0.00 0.00 0.00 4.02
34 35 3.617531 CGGTAGTTTCTGCTCAAGTCCAT 60.618 47.826 0.00 0.00 0.00 3.41
35 36 3.686726 GGTAGTTTCTGCTCAAGTCCATG 59.313 47.826 0.00 0.00 0.00 3.66
36 37 3.498774 AGTTTCTGCTCAAGTCCATGT 57.501 42.857 0.00 0.00 0.00 3.21
37 38 3.406764 AGTTTCTGCTCAAGTCCATGTC 58.593 45.455 0.00 0.00 0.00 3.06
38 39 3.072184 AGTTTCTGCTCAAGTCCATGTCT 59.928 43.478 0.00 0.00 0.00 3.41
39 40 3.777106 TTCTGCTCAAGTCCATGTCTT 57.223 42.857 0.00 0.00 0.00 3.01
40 41 4.890158 TTCTGCTCAAGTCCATGTCTTA 57.110 40.909 0.00 0.00 0.00 2.10
41 42 4.462508 TCTGCTCAAGTCCATGTCTTAG 57.537 45.455 0.00 0.00 0.00 2.18
42 43 3.196469 TCTGCTCAAGTCCATGTCTTAGG 59.804 47.826 0.00 0.00 0.00 2.69
43 44 2.906389 TGCTCAAGTCCATGTCTTAGGT 59.094 45.455 0.00 0.00 0.00 3.08
44 45 3.265791 GCTCAAGTCCATGTCTTAGGTG 58.734 50.000 0.00 0.00 0.00 4.00
45 46 3.055819 GCTCAAGTCCATGTCTTAGGTGA 60.056 47.826 0.00 0.00 0.00 4.02
46 47 4.383552 GCTCAAGTCCATGTCTTAGGTGAT 60.384 45.833 0.00 0.00 0.00 3.06
47 48 5.163405 GCTCAAGTCCATGTCTTAGGTGATA 60.163 44.000 0.00 0.00 0.00 2.15
48 49 6.463614 GCTCAAGTCCATGTCTTAGGTGATAT 60.464 42.308 0.00 0.00 0.00 1.63
49 50 6.820335 TCAAGTCCATGTCTTAGGTGATATG 58.180 40.000 0.00 0.00 35.99 1.78
50 51 6.384015 TCAAGTCCATGTCTTAGGTGATATGT 59.616 38.462 0.00 0.00 34.93 2.29
51 52 6.412362 AGTCCATGTCTTAGGTGATATGTC 57.588 41.667 0.00 0.00 34.93 3.06
52 53 5.305644 AGTCCATGTCTTAGGTGATATGTCC 59.694 44.000 0.00 0.00 34.93 4.02
53 54 5.070446 GTCCATGTCTTAGGTGATATGTCCA 59.930 44.000 0.00 0.00 34.93 4.02
54 55 5.070446 TCCATGTCTTAGGTGATATGTCCAC 59.930 44.000 0.00 0.00 34.93 4.02
55 56 5.163311 CCATGTCTTAGGTGATATGTCCACA 60.163 44.000 0.00 0.00 34.93 4.17
56 57 6.348498 CATGTCTTAGGTGATATGTCCACAA 58.652 40.000 0.00 0.00 36.31 3.33
57 58 6.367374 TGTCTTAGGTGATATGTCCACAAA 57.633 37.500 0.00 0.00 36.31 2.83
58 59 6.774673 TGTCTTAGGTGATATGTCCACAAAA 58.225 36.000 0.00 0.00 36.31 2.44
59 60 6.878923 TGTCTTAGGTGATATGTCCACAAAAG 59.121 38.462 0.00 0.00 36.31 2.27
60 61 7.103641 GTCTTAGGTGATATGTCCACAAAAGA 58.896 38.462 0.00 0.00 35.93 2.52
61 62 7.770897 GTCTTAGGTGATATGTCCACAAAAGAT 59.229 37.037 0.00 0.00 38.20 2.40
62 63 8.988060 TCTTAGGTGATATGTCCACAAAAGATA 58.012 33.333 0.00 0.00 34.67 1.98
63 64 8.958119 TTAGGTGATATGTCCACAAAAGATAC 57.042 34.615 0.00 0.00 36.31 2.24
64 65 6.357367 AGGTGATATGTCCACAAAAGATACC 58.643 40.000 0.00 0.00 36.31 2.73
65 66 6.069673 AGGTGATATGTCCACAAAAGATACCA 60.070 38.462 0.00 0.00 36.31 3.25
66 67 6.601613 GGTGATATGTCCACAAAAGATACCAA 59.398 38.462 0.00 0.00 36.31 3.67
67 68 7.122055 GGTGATATGTCCACAAAAGATACCAAA 59.878 37.037 0.00 0.00 36.31 3.28
68 69 8.686334 GTGATATGTCCACAAAAGATACCAAAT 58.314 33.333 0.00 0.00 34.81 2.32
69 70 8.902806 TGATATGTCCACAAAAGATACCAAATC 58.097 33.333 0.00 0.00 0.00 2.17
70 71 8.821686 ATATGTCCACAAAAGATACCAAATCA 57.178 30.769 0.00 0.00 0.00 2.57
71 72 7.722949 ATGTCCACAAAAGATACCAAATCAT 57.277 32.000 0.00 0.00 0.00 2.45
72 73 7.537596 TGTCCACAAAAGATACCAAATCATT 57.462 32.000 0.00 0.00 0.00 2.57
73 74 7.961351 TGTCCACAAAAGATACCAAATCATTT 58.039 30.769 0.00 0.00 0.00 2.32
74 75 8.428063 TGTCCACAAAAGATACCAAATCATTTT 58.572 29.630 0.00 0.00 0.00 1.82
75 76 8.711457 GTCCACAAAAGATACCAAATCATTTTG 58.289 33.333 6.65 6.65 41.23 2.44
76 77 8.428063 TCCACAAAAGATACCAAATCATTTTGT 58.572 29.630 7.76 7.76 46.23 2.83
77 78 9.703892 CCACAAAAGATACCAAATCATTTTGTA 57.296 29.630 12.01 0.00 44.55 2.41
82 83 9.705290 AAAGATACCAAATCATTTTGTACAACC 57.295 29.630 8.07 0.00 40.55 3.77
83 84 8.415950 AGATACCAAATCATTTTGTACAACCA 57.584 30.769 8.07 0.00 40.55 3.67
84 85 9.034800 AGATACCAAATCATTTTGTACAACCAT 57.965 29.630 8.07 0.46 40.55 3.55
85 86 9.086336 GATACCAAATCATTTTGTACAACCATG 57.914 33.333 8.07 13.32 40.55 3.66
86 87 6.825610 ACCAAATCATTTTGTACAACCATGT 58.174 32.000 19.56 9.72 40.55 3.21
87 88 7.278875 ACCAAATCATTTTGTACAACCATGTT 58.721 30.769 19.56 12.66 40.55 2.71
88 89 7.440856 ACCAAATCATTTTGTACAACCATGTTC 59.559 33.333 19.56 0.00 40.55 3.18
89 90 7.656948 CCAAATCATTTTGTACAACCATGTTCT 59.343 33.333 19.56 8.86 40.55 3.01
90 91 9.044150 CAAATCATTTTGTACAACCATGTTCTT 57.956 29.630 19.56 12.47 35.88 2.52
91 92 8.592105 AATCATTTTGTACAACCATGTTCTTG 57.408 30.769 19.56 5.66 41.05 3.02
92 93 7.106439 TCATTTTGTACAACCATGTTCTTGT 57.894 32.000 19.56 6.08 41.05 3.16
93 94 6.977502 TCATTTTGTACAACCATGTTCTTGTG 59.022 34.615 19.56 2.10 41.05 3.33
94 95 4.909696 TTGTACAACCATGTTCTTGTGG 57.090 40.909 3.59 0.00 41.05 4.17
95 96 2.621055 TGTACAACCATGTTCTTGTGGC 59.379 45.455 0.00 5.08 41.05 5.01
96 97 0.667993 ACAACCATGTTCTTGTGGCG 59.332 50.000 0.00 0.00 39.13 5.69
97 98 0.667993 CAACCATGTTCTTGTGGCGT 59.332 50.000 0.00 0.00 39.13 5.68
98 99 1.876799 CAACCATGTTCTTGTGGCGTA 59.123 47.619 0.00 0.00 39.13 4.42
99 100 2.487762 CAACCATGTTCTTGTGGCGTAT 59.512 45.455 0.00 0.00 39.13 3.06
100 101 2.356135 ACCATGTTCTTGTGGCGTATC 58.644 47.619 0.00 0.00 39.13 2.24
101 102 2.027192 ACCATGTTCTTGTGGCGTATCT 60.027 45.455 0.00 0.00 39.13 1.98
102 103 3.196901 ACCATGTTCTTGTGGCGTATCTA 59.803 43.478 0.00 0.00 39.13 1.98
103 104 4.141711 ACCATGTTCTTGTGGCGTATCTAT 60.142 41.667 0.00 0.00 39.13 1.98
104 105 4.816385 CCATGTTCTTGTGGCGTATCTATT 59.184 41.667 0.00 0.00 0.00 1.73
105 106 5.296780 CCATGTTCTTGTGGCGTATCTATTT 59.703 40.000 0.00 0.00 0.00 1.40
106 107 6.481976 CCATGTTCTTGTGGCGTATCTATTTA 59.518 38.462 0.00 0.00 0.00 1.40
107 108 6.897259 TGTTCTTGTGGCGTATCTATTTAC 57.103 37.500 0.00 0.00 0.00 2.01
108 109 6.636705 TGTTCTTGTGGCGTATCTATTTACT 58.363 36.000 0.00 0.00 0.00 2.24
109 110 7.101054 TGTTCTTGTGGCGTATCTATTTACTT 58.899 34.615 0.00 0.00 0.00 2.24
110 111 8.252417 TGTTCTTGTGGCGTATCTATTTACTTA 58.748 33.333 0.00 0.00 0.00 2.24
111 112 8.753175 GTTCTTGTGGCGTATCTATTTACTTAG 58.247 37.037 0.00 0.00 0.00 2.18
112 113 8.229253 TCTTGTGGCGTATCTATTTACTTAGA 57.771 34.615 0.00 0.00 32.94 2.10
113 114 8.857098 TCTTGTGGCGTATCTATTTACTTAGAT 58.143 33.333 0.00 0.00 40.95 1.98
114 115 9.477484 CTTGTGGCGTATCTATTTACTTAGATT 57.523 33.333 0.00 0.00 39.21 2.40
118 119 9.582431 TGGCGTATCTATTTACTTAGATTATGC 57.418 33.333 0.00 2.83 39.21 3.14
119 120 9.804758 GGCGTATCTATTTACTTAGATTATGCT 57.195 33.333 0.00 0.00 39.21 3.79
130 131 7.661536 ACTTAGATTATGCTCCTTGTACTCA 57.338 36.000 0.00 0.00 0.00 3.41
131 132 7.493367 ACTTAGATTATGCTCCTTGTACTCAC 58.507 38.462 0.00 0.00 0.00 3.51
132 133 5.283457 AGATTATGCTCCTTGTACTCACC 57.717 43.478 0.00 0.00 0.00 4.02
133 134 4.716784 AGATTATGCTCCTTGTACTCACCA 59.283 41.667 0.00 0.00 0.00 4.17
134 135 4.901197 TTATGCTCCTTGTACTCACCAA 57.099 40.909 0.00 0.00 0.00 3.67
135 136 3.788227 ATGCTCCTTGTACTCACCAAA 57.212 42.857 0.00 0.00 0.00 3.28
136 137 3.788227 TGCTCCTTGTACTCACCAAAT 57.212 42.857 0.00 0.00 0.00 2.32
137 138 3.674997 TGCTCCTTGTACTCACCAAATC 58.325 45.455 0.00 0.00 0.00 2.17
138 139 3.327757 TGCTCCTTGTACTCACCAAATCT 59.672 43.478 0.00 0.00 0.00 2.40
139 140 3.686726 GCTCCTTGTACTCACCAAATCTG 59.313 47.826 0.00 0.00 0.00 2.90
150 151 2.133281 CCAAATCTGGTGATCTGGCA 57.867 50.000 0.00 0.00 34.43 4.92
151 152 2.662866 CCAAATCTGGTGATCTGGCAT 58.337 47.619 0.00 0.00 34.43 4.40
152 153 2.361119 CCAAATCTGGTGATCTGGCATG 59.639 50.000 0.00 0.00 34.43 4.06
153 154 1.688772 AATCTGGTGATCTGGCATGC 58.311 50.000 9.90 9.90 31.51 4.06
154 155 0.178998 ATCTGGTGATCTGGCATGCC 60.179 55.000 30.54 30.54 0.00 4.40
155 156 1.226542 CTGGTGATCTGGCATGCCT 59.773 57.895 35.53 17.85 36.94 4.75
156 157 0.818445 CTGGTGATCTGGCATGCCTC 60.818 60.000 35.53 25.21 36.94 4.70
157 158 1.890979 GGTGATCTGGCATGCCTCG 60.891 63.158 35.53 25.71 36.94 4.63
158 159 1.890979 GTGATCTGGCATGCCTCGG 60.891 63.158 35.53 24.35 36.94 4.63
159 160 2.369633 TGATCTGGCATGCCTCGGT 61.370 57.895 35.53 23.31 36.94 4.69
160 161 1.153086 GATCTGGCATGCCTCGGTT 60.153 57.895 35.53 19.96 36.94 4.44
161 162 0.749454 GATCTGGCATGCCTCGGTTT 60.749 55.000 35.53 15.42 36.94 3.27
162 163 1.033746 ATCTGGCATGCCTCGGTTTG 61.034 55.000 35.53 16.70 36.94 2.93
163 164 3.346631 CTGGCATGCCTCGGTTTGC 62.347 63.158 35.53 8.06 36.94 3.68
164 165 4.133796 GGCATGCCTCGGTTTGCC 62.134 66.667 29.98 13.11 46.94 4.52
165 166 3.372730 GCATGCCTCGGTTTGCCA 61.373 61.111 6.36 0.00 34.09 4.92
166 167 2.879907 CATGCCTCGGTTTGCCAG 59.120 61.111 0.00 0.00 34.09 4.85
167 168 1.973281 CATGCCTCGGTTTGCCAGT 60.973 57.895 0.00 0.00 34.09 4.00
168 169 1.228552 ATGCCTCGGTTTGCCAGTT 60.229 52.632 0.00 0.00 34.09 3.16
169 170 0.827507 ATGCCTCGGTTTGCCAGTTT 60.828 50.000 0.00 0.00 34.09 2.66
170 171 1.040339 TGCCTCGGTTTGCCAGTTTT 61.040 50.000 0.00 0.00 34.09 2.43
171 172 0.597377 GCCTCGGTTTGCCAGTTTTG 60.597 55.000 0.00 0.00 34.09 2.44
172 173 0.744281 CCTCGGTTTGCCAGTTTTGT 59.256 50.000 0.00 0.00 34.09 2.83
173 174 1.136110 CCTCGGTTTGCCAGTTTTGTT 59.864 47.619 0.00 0.00 34.09 2.83
174 175 2.418060 CCTCGGTTTGCCAGTTTTGTTT 60.418 45.455 0.00 0.00 34.09 2.83
175 176 3.258228 CTCGGTTTGCCAGTTTTGTTTT 58.742 40.909 0.00 0.00 34.09 2.43
176 177 3.254892 TCGGTTTGCCAGTTTTGTTTTC 58.745 40.909 0.00 0.00 34.09 2.29
177 178 3.056465 TCGGTTTGCCAGTTTTGTTTTCT 60.056 39.130 0.00 0.00 34.09 2.52
178 179 4.158025 TCGGTTTGCCAGTTTTGTTTTCTA 59.842 37.500 0.00 0.00 34.09 2.10
179 180 5.047188 CGGTTTGCCAGTTTTGTTTTCTAT 58.953 37.500 0.00 0.00 34.09 1.98
180 181 5.522097 CGGTTTGCCAGTTTTGTTTTCTATT 59.478 36.000 0.00 0.00 34.09 1.73
181 182 6.509358 CGGTTTGCCAGTTTTGTTTTCTATTG 60.509 38.462 0.00 0.00 34.09 1.90
182 183 5.982465 TTGCCAGTTTTGTTTTCTATTGC 57.018 34.783 0.00 0.00 0.00 3.56
183 184 4.376146 TGCCAGTTTTGTTTTCTATTGCC 58.624 39.130 0.00 0.00 0.00 4.52
184 185 4.100808 TGCCAGTTTTGTTTTCTATTGCCT 59.899 37.500 0.00 0.00 0.00 4.75
185 186 5.303078 TGCCAGTTTTGTTTTCTATTGCCTA 59.697 36.000 0.00 0.00 0.00 3.93
186 187 6.014669 TGCCAGTTTTGTTTTCTATTGCCTAT 60.015 34.615 0.00 0.00 0.00 2.57
187 188 7.177568 TGCCAGTTTTGTTTTCTATTGCCTATA 59.822 33.333 0.00 0.00 0.00 1.31
188 189 7.702348 GCCAGTTTTGTTTTCTATTGCCTATAG 59.298 37.037 0.00 0.00 38.06 1.31
189 190 8.190784 CCAGTTTTGTTTTCTATTGCCTATAGG 58.809 37.037 15.01 15.01 37.42 2.57
190 191 8.956426 CAGTTTTGTTTTCTATTGCCTATAGGA 58.044 33.333 23.61 2.39 37.42 2.94
191 192 9.178758 AGTTTTGTTTTCTATTGCCTATAGGAG 57.821 33.333 23.61 10.75 37.42 3.69
192 193 8.957466 GTTTTGTTTTCTATTGCCTATAGGAGT 58.043 33.333 23.61 9.35 37.42 3.85
199 200 9.524496 TTTCTATTGCCTATAGGAGTAATACGA 57.476 33.333 23.61 15.97 37.42 3.43
200 201 8.503458 TCTATTGCCTATAGGAGTAATACGAC 57.497 38.462 23.61 0.90 37.42 4.34
201 202 8.105197 TCTATTGCCTATAGGAGTAATACGACA 58.895 37.037 23.61 3.69 37.42 4.35
202 203 5.954296 TGCCTATAGGAGTAATACGACAC 57.046 43.478 23.61 0.16 37.39 3.67
203 204 5.628130 TGCCTATAGGAGTAATACGACACT 58.372 41.667 23.61 0.00 37.39 3.55
204 205 6.066690 TGCCTATAGGAGTAATACGACACTT 58.933 40.000 23.61 0.00 37.39 3.16
205 206 7.226441 TGCCTATAGGAGTAATACGACACTTA 58.774 38.462 23.61 0.00 37.39 2.24
206 207 7.886970 TGCCTATAGGAGTAATACGACACTTAT 59.113 37.037 23.61 0.00 37.39 1.73
207 208 8.738106 GCCTATAGGAGTAATACGACACTTATT 58.262 37.037 23.61 0.00 37.39 1.40
216 217 9.622004 AGTAATACGACACTTATTATTGATCGG 57.378 33.333 0.00 0.00 32.56 4.18
217 218 9.616634 GTAATACGACACTTATTATTGATCGGA 57.383 33.333 0.00 0.00 32.56 4.55
218 219 8.744008 AATACGACACTTATTATTGATCGGAG 57.256 34.615 0.00 0.00 32.56 4.63
219 220 5.529791 ACGACACTTATTATTGATCGGAGG 58.470 41.667 0.00 0.00 32.56 4.30
220 221 4.923871 CGACACTTATTATTGATCGGAGGG 59.076 45.833 0.00 0.00 0.00 4.30
221 222 5.278808 CGACACTTATTATTGATCGGAGGGA 60.279 44.000 0.00 0.00 0.00 4.20
222 223 6.102897 ACACTTATTATTGATCGGAGGGAG 57.897 41.667 0.00 0.00 0.00 4.30
223 224 5.602978 ACACTTATTATTGATCGGAGGGAGT 59.397 40.000 0.00 0.00 0.00 3.85
224 225 6.781014 ACACTTATTATTGATCGGAGGGAGTA 59.219 38.462 0.00 0.00 0.00 2.59
225 226 7.091443 CACTTATTATTGATCGGAGGGAGTAC 58.909 42.308 0.00 0.00 0.00 2.73
226 227 6.781014 ACTTATTATTGATCGGAGGGAGTACA 59.219 38.462 0.00 0.00 0.00 2.90
227 228 7.455008 ACTTATTATTGATCGGAGGGAGTACAT 59.545 37.037 0.00 0.00 0.00 2.29
228 229 8.888836 TTATTATTGATCGGAGGGAGTACATA 57.111 34.615 0.00 0.00 0.00 2.29
229 230 7.979786 ATTATTGATCGGAGGGAGTACATAT 57.020 36.000 0.00 0.00 0.00 1.78
230 231 5.923733 ATTGATCGGAGGGAGTACATATC 57.076 43.478 0.00 0.00 0.00 1.63
231 232 4.382386 TGATCGGAGGGAGTACATATCA 57.618 45.455 0.00 0.00 0.00 2.15
232 233 4.935578 TGATCGGAGGGAGTACATATCAT 58.064 43.478 0.00 0.00 0.00 2.45
233 234 6.074698 TGATCGGAGGGAGTACATATCATA 57.925 41.667 0.00 0.00 0.00 2.15
234 235 6.122964 TGATCGGAGGGAGTACATATCATAG 58.877 44.000 0.00 0.00 0.00 2.23
235 236 5.774102 TCGGAGGGAGTACATATCATAGA 57.226 43.478 0.00 0.00 0.00 1.98
236 237 5.746284 TCGGAGGGAGTACATATCATAGAG 58.254 45.833 0.00 0.00 0.00 2.43
237 238 4.884744 CGGAGGGAGTACATATCATAGAGG 59.115 50.000 0.00 0.00 0.00 3.69
238 239 4.647399 GGAGGGAGTACATATCATAGAGGC 59.353 50.000 0.00 0.00 0.00 4.70
239 240 5.515106 GAGGGAGTACATATCATAGAGGCT 58.485 45.833 0.00 0.00 0.00 4.58
240 241 5.515106 AGGGAGTACATATCATAGAGGCTC 58.485 45.833 6.34 6.34 0.00 4.70
241 242 5.015710 AGGGAGTACATATCATAGAGGCTCA 59.984 44.000 18.26 3.05 0.00 4.26
242 243 5.896678 GGGAGTACATATCATAGAGGCTCAT 59.103 44.000 18.26 5.47 0.00 2.90
243 244 6.382570 GGGAGTACATATCATAGAGGCTCATT 59.617 42.308 18.26 0.00 0.00 2.57
244 245 7.093112 GGGAGTACATATCATAGAGGCTCATTT 60.093 40.741 18.26 0.00 0.00 2.32
245 246 7.763528 GGAGTACATATCATAGAGGCTCATTTG 59.236 40.741 18.26 10.80 0.00 2.32
246 247 7.619050 AGTACATATCATAGAGGCTCATTTGG 58.381 38.462 18.26 1.37 0.00 3.28
247 248 6.445451 ACATATCATAGAGGCTCATTTGGT 57.555 37.500 18.26 9.56 0.00 3.67
248 249 6.845908 ACATATCATAGAGGCTCATTTGGTT 58.154 36.000 18.26 0.00 0.00 3.67
249 250 6.713903 ACATATCATAGAGGCTCATTTGGTTG 59.286 38.462 18.26 9.03 0.00 3.77
250 251 3.282021 TCATAGAGGCTCATTTGGTTGC 58.718 45.455 18.26 0.00 0.00 4.17
251 252 1.737838 TAGAGGCTCATTTGGTTGCG 58.262 50.000 18.26 0.00 0.00 4.85
252 253 0.962356 AGAGGCTCATTTGGTTGCGG 60.962 55.000 18.26 0.00 0.00 5.69
253 254 2.125952 GGCTCATTTGGTTGCGGC 60.126 61.111 0.00 0.00 0.00 6.53
254 255 2.125952 GCTCATTTGGTTGCGGCC 60.126 61.111 0.00 0.00 0.00 6.13
255 256 2.639327 GCTCATTTGGTTGCGGCCT 61.639 57.895 0.00 0.00 0.00 5.19
256 257 1.312371 GCTCATTTGGTTGCGGCCTA 61.312 55.000 0.00 0.00 0.00 3.93
257 258 0.451783 CTCATTTGGTTGCGGCCTAC 59.548 55.000 0.00 0.00 0.00 3.18
258 259 0.037590 TCATTTGGTTGCGGCCTACT 59.962 50.000 0.00 0.00 0.00 2.57
259 260 1.279558 TCATTTGGTTGCGGCCTACTA 59.720 47.619 0.00 0.00 0.00 1.82
260 261 1.670811 CATTTGGTTGCGGCCTACTAG 59.329 52.381 0.00 0.00 0.00 2.57
261 262 0.688487 TTTGGTTGCGGCCTACTAGT 59.312 50.000 0.00 0.00 0.00 2.57
262 263 1.559368 TTGGTTGCGGCCTACTAGTA 58.441 50.000 0.00 1.89 0.00 1.82
263 264 1.108776 TGGTTGCGGCCTACTAGTAG 58.891 55.000 21.11 21.11 0.00 2.57
278 279 7.649370 CTACTAGTAGGATTTGTGATGCATG 57.351 40.000 20.44 0.00 0.00 4.06
279 280 6.239217 ACTAGTAGGATTTGTGATGCATGA 57.761 37.500 2.46 0.00 0.00 3.07
280 281 6.286758 ACTAGTAGGATTTGTGATGCATGAG 58.713 40.000 2.46 0.00 0.00 2.90
281 282 4.458397 AGTAGGATTTGTGATGCATGAGG 58.542 43.478 2.46 0.00 0.00 3.86
282 283 2.029623 AGGATTTGTGATGCATGAGGC 58.970 47.619 2.46 0.00 45.13 4.70
283 284 2.029623 GGATTTGTGATGCATGAGGCT 58.970 47.619 2.46 0.00 45.15 4.58
284 285 2.034305 GGATTTGTGATGCATGAGGCTC 59.966 50.000 2.46 7.79 45.15 4.70
285 286 2.203470 TTTGTGATGCATGAGGCTCA 57.797 45.000 21.19 21.19 45.15 4.26
286 287 2.430248 TTGTGATGCATGAGGCTCAT 57.570 45.000 24.01 24.01 45.15 2.90
287 288 2.430248 TGTGATGCATGAGGCTCATT 57.570 45.000 26.87 13.51 45.15 2.57
288 289 2.730382 TGTGATGCATGAGGCTCATTT 58.270 42.857 26.87 14.73 45.15 2.32
289 290 2.686405 TGTGATGCATGAGGCTCATTTC 59.314 45.455 26.87 21.68 45.15 2.17
290 291 2.950309 GTGATGCATGAGGCTCATTTCT 59.050 45.455 26.87 13.87 45.15 2.52
291 292 3.003482 GTGATGCATGAGGCTCATTTCTC 59.997 47.826 26.87 20.92 45.15 2.87
292 293 3.118000 TGATGCATGAGGCTCATTTCTCT 60.118 43.478 26.87 10.40 45.15 3.10
293 294 4.102054 TGATGCATGAGGCTCATTTCTCTA 59.898 41.667 26.87 9.70 45.15 2.43
294 295 3.801698 TGCATGAGGCTCATTTCTCTAC 58.198 45.455 26.87 10.95 45.15 2.59
295 296 3.198417 TGCATGAGGCTCATTTCTCTACA 59.802 43.478 26.87 13.14 45.15 2.74
296 297 4.141551 TGCATGAGGCTCATTTCTCTACAT 60.142 41.667 26.87 0.22 45.15 2.29
297 298 4.820716 GCATGAGGCTCATTTCTCTACATT 59.179 41.667 26.87 0.00 34.28 2.71
298 299 5.298777 GCATGAGGCTCATTTCTCTACATTT 59.701 40.000 26.87 0.00 34.28 2.32
299 300 6.183360 GCATGAGGCTCATTTCTCTACATTTT 60.183 38.462 26.87 0.00 34.28 1.82
300 301 7.630082 GCATGAGGCTCATTTCTCTACATTTTT 60.630 37.037 26.87 0.00 34.28 1.94
327 328 4.387343 CCCTTGGGGCAGCCATGT 62.387 66.667 15.19 0.00 35.35 3.21
328 329 3.072468 CCTTGGGGCAGCCATGTG 61.072 66.667 15.19 0.00 0.00 3.21
329 330 3.766691 CTTGGGGCAGCCATGTGC 61.767 66.667 15.19 0.00 43.19 4.57
342 343 4.503767 GCCATGTGCGACAATTTATTTG 57.496 40.909 0.00 0.00 41.36 2.32
344 345 5.796406 AGCCATGTGCGACAATTTATTTGTT 60.796 36.000 0.00 0.00 45.43 2.83
345 346 7.768839 AGCCATGTGCGACAATTTATTTGTTG 61.769 38.462 3.58 3.58 45.43 3.33
363 364 7.825331 TTTGTTGAACTGTATTATGGTTGGA 57.175 32.000 0.00 0.00 0.00 3.53
364 365 8.415950 TTTGTTGAACTGTATTATGGTTGGAT 57.584 30.769 0.00 0.00 0.00 3.41
365 366 7.389803 TGTTGAACTGTATTATGGTTGGATG 57.610 36.000 0.00 0.00 0.00 3.51
366 367 7.171653 TGTTGAACTGTATTATGGTTGGATGA 58.828 34.615 0.00 0.00 0.00 2.92
367 368 7.833682 TGTTGAACTGTATTATGGTTGGATGAT 59.166 33.333 0.00 0.00 0.00 2.45
368 369 7.806409 TGAACTGTATTATGGTTGGATGATG 57.194 36.000 0.00 0.00 0.00 3.07
369 370 7.572814 TGAACTGTATTATGGTTGGATGATGA 58.427 34.615 0.00 0.00 0.00 2.92
370 371 8.052141 TGAACTGTATTATGGTTGGATGATGAA 58.948 33.333 0.00 0.00 0.00 2.57
371 372 7.807977 ACTGTATTATGGTTGGATGATGAAC 57.192 36.000 0.00 0.00 0.00 3.18
372 373 7.577303 ACTGTATTATGGTTGGATGATGAACT 58.423 34.615 0.00 0.00 0.00 3.01
373 374 8.055181 ACTGTATTATGGTTGGATGATGAACTT 58.945 33.333 0.00 0.00 0.00 2.66
374 375 8.821686 TGTATTATGGTTGGATGATGAACTTT 57.178 30.769 0.00 0.00 0.00 2.66
375 376 8.685427 TGTATTATGGTTGGATGATGAACTTTG 58.315 33.333 0.00 0.00 0.00 2.77
376 377 7.959658 ATTATGGTTGGATGATGAACTTTGA 57.040 32.000 0.00 0.00 0.00 2.69
377 378 7.959658 TTATGGTTGGATGATGAACTTTGAT 57.040 32.000 0.00 0.00 0.00 2.57
378 379 5.902613 TGGTTGGATGATGAACTTTGATC 57.097 39.130 0.00 0.00 0.00 2.92
379 380 5.573219 TGGTTGGATGATGAACTTTGATCT 58.427 37.500 0.00 0.00 0.00 2.75
380 381 5.416639 TGGTTGGATGATGAACTTTGATCTG 59.583 40.000 0.00 0.00 0.00 2.90
381 382 5.649395 GGTTGGATGATGAACTTTGATCTGA 59.351 40.000 0.00 0.00 0.00 3.27
382 383 6.320672 GGTTGGATGATGAACTTTGATCTGAT 59.679 38.462 0.00 0.00 0.00 2.90
383 384 7.500227 GGTTGGATGATGAACTTTGATCTGATA 59.500 37.037 0.00 0.00 0.00 2.15
384 385 8.896744 GTTGGATGATGAACTTTGATCTGATAA 58.103 33.333 0.00 0.00 0.00 1.75
385 386 9.465199 TTGGATGATGAACTTTGATCTGATAAA 57.535 29.630 0.00 0.00 0.00 1.40
386 387 9.636789 TGGATGATGAACTTTGATCTGATAAAT 57.363 29.630 0.00 0.00 0.00 1.40
396 397 9.247861 ACTTTGATCTGATAAATAAAAGGCTGT 57.752 29.630 0.00 0.00 31.36 4.40
397 398 9.512435 CTTTGATCTGATAAATAAAAGGCTGTG 57.488 33.333 0.00 0.00 0.00 3.66
398 399 8.579850 TTGATCTGATAAATAAAAGGCTGTGT 57.420 30.769 0.00 0.00 0.00 3.72
399 400 7.988737 TGATCTGATAAATAAAAGGCTGTGTG 58.011 34.615 0.00 0.00 0.00 3.82
400 401 6.194796 TCTGATAAATAAAAGGCTGTGTGC 57.805 37.500 0.00 0.00 41.94 4.57
883 1015 4.617520 TTCCGAAGCGCTGGCACA 62.618 61.111 12.58 0.00 43.41 4.57
923 1055 2.752238 CTGCCTCCTCTCGTCCGT 60.752 66.667 0.00 0.00 0.00 4.69
996 1133 5.943416 TCCTGATTTCGGATCTTTGCTAAAA 59.057 36.000 0.00 0.00 0.00 1.52
1037 1175 1.409064 CTATGTTGCTGTCCCTCGCTA 59.591 52.381 0.00 0.00 0.00 4.26
1242 1380 2.718107 GATGCGGCTAAGCTTGCC 59.282 61.111 22.57 22.57 46.42 4.52
1262 1400 2.575694 GATGAGACTGCTGATCGTGT 57.424 50.000 0.00 0.00 0.00 4.49
1650 1788 1.880027 GCCAACTTGGAGTTTCATCGT 59.120 47.619 12.37 0.00 40.96 3.73
2004 2142 2.909965 GCGCGATCCTCCTCCTCT 60.910 66.667 12.10 0.00 0.00 3.69
2494 2638 2.509336 CTCGCCGCCGTGATTCTT 60.509 61.111 0.00 0.00 35.54 2.52
2504 2648 2.937149 GCCGTGATTCTTAGGGTCTTTC 59.063 50.000 0.00 0.00 0.00 2.62
2744 2888 7.786178 TTCAGTTACCATATTCACATAGTGC 57.214 36.000 0.00 0.00 32.98 4.40
2792 2936 6.575244 TTTAGTCCATTCTGATGTATGGGT 57.425 37.500 6.94 0.00 40.28 4.51
2979 3123 0.812014 TTTTTCGTGCTGACTCCGCA 60.812 50.000 0.00 0.00 34.52 5.69
3174 3318 1.403814 CCGAGGCTATCTCCACTTCA 58.596 55.000 0.00 0.00 39.30 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.705072 AGCAGAAACTACCGCCTATTACT 59.295 43.478 0.00 0.00 0.00 2.24
4 5 4.049869 GAGCAGAAACTACCGCCTATTAC 58.950 47.826 0.00 0.00 0.00 1.89
5 6 3.702548 TGAGCAGAAACTACCGCCTATTA 59.297 43.478 0.00 0.00 0.00 0.98
6 7 2.500098 TGAGCAGAAACTACCGCCTATT 59.500 45.455 0.00 0.00 0.00 1.73
9 10 0.685097 TTGAGCAGAAACTACCGCCT 59.315 50.000 0.00 0.00 0.00 5.52
11 12 1.727335 GACTTGAGCAGAAACTACCGC 59.273 52.381 0.00 0.00 0.00 5.68
13 14 3.402628 TGGACTTGAGCAGAAACTACC 57.597 47.619 0.00 0.00 0.00 3.18
14 15 4.319177 ACATGGACTTGAGCAGAAACTAC 58.681 43.478 0.00 0.00 0.00 2.73
15 16 4.284490 AGACATGGACTTGAGCAGAAACTA 59.716 41.667 0.00 0.00 0.00 2.24
16 17 3.072184 AGACATGGACTTGAGCAGAAACT 59.928 43.478 0.00 0.00 0.00 2.66
18 19 3.777106 AGACATGGACTTGAGCAGAAA 57.223 42.857 0.00 0.00 0.00 2.52
20 21 3.196469 CCTAAGACATGGACTTGAGCAGA 59.804 47.826 14.68 0.00 0.00 4.26
22 23 2.906389 ACCTAAGACATGGACTTGAGCA 59.094 45.455 14.68 0.00 0.00 4.26
24 25 4.808414 TCACCTAAGACATGGACTTGAG 57.192 45.455 14.68 9.59 0.00 3.02
25 26 6.384015 ACATATCACCTAAGACATGGACTTGA 59.616 38.462 14.68 7.04 0.00 3.02
26 27 6.586344 ACATATCACCTAAGACATGGACTTG 58.414 40.000 14.68 4.86 0.00 3.16
27 28 6.183361 GGACATATCACCTAAGACATGGACTT 60.183 42.308 11.11 11.11 0.00 3.01
28 29 5.305644 GGACATATCACCTAAGACATGGACT 59.694 44.000 0.00 0.00 0.00 3.85
30 31 5.070446 GTGGACATATCACCTAAGACATGGA 59.930 44.000 0.00 0.00 0.00 3.41
31 32 5.163311 TGTGGACATATCACCTAAGACATGG 60.163 44.000 0.00 0.00 34.46 3.66
33 34 6.560003 TTGTGGACATATCACCTAAGACAT 57.440 37.500 0.00 0.00 34.46 3.06
34 35 6.367374 TTTGTGGACATATCACCTAAGACA 57.633 37.500 0.00 0.00 34.46 3.41
35 36 7.103641 TCTTTTGTGGACATATCACCTAAGAC 58.896 38.462 0.00 0.00 33.13 3.01
36 37 7.252612 TCTTTTGTGGACATATCACCTAAGA 57.747 36.000 0.00 0.00 34.37 2.10
37 38 9.046296 GTATCTTTTGTGGACATATCACCTAAG 57.954 37.037 0.00 0.00 34.46 2.18
38 39 7.990886 GGTATCTTTTGTGGACATATCACCTAA 59.009 37.037 0.00 0.00 34.46 2.69
39 40 7.126573 TGGTATCTTTTGTGGACATATCACCTA 59.873 37.037 0.00 0.00 34.46 3.08
40 41 6.069673 TGGTATCTTTTGTGGACATATCACCT 60.070 38.462 0.00 0.00 34.46 4.00
41 42 6.119536 TGGTATCTTTTGTGGACATATCACC 58.880 40.000 0.00 0.00 34.46 4.02
42 43 7.624360 TTGGTATCTTTTGTGGACATATCAC 57.376 36.000 0.00 0.00 35.82 3.06
43 44 8.821686 ATTTGGTATCTTTTGTGGACATATCA 57.178 30.769 0.00 0.00 0.00 2.15
44 45 8.902806 TGATTTGGTATCTTTTGTGGACATATC 58.097 33.333 0.00 0.00 0.00 1.63
45 46 8.821686 TGATTTGGTATCTTTTGTGGACATAT 57.178 30.769 0.00 0.00 0.00 1.78
46 47 8.821686 ATGATTTGGTATCTTTTGTGGACATA 57.178 30.769 0.00 0.00 0.00 2.29
47 48 7.722949 ATGATTTGGTATCTTTTGTGGACAT 57.277 32.000 0.00 0.00 0.00 3.06
48 49 7.537596 AATGATTTGGTATCTTTTGTGGACA 57.462 32.000 0.00 0.00 0.00 4.02
49 50 8.711457 CAAAATGATTTGGTATCTTTTGTGGAC 58.289 33.333 0.00 0.00 41.81 4.02
50 51 8.830201 CAAAATGATTTGGTATCTTTTGTGGA 57.170 30.769 0.00 0.00 41.81 4.02
61 62 8.424918 AACATGGTTGTACAAAATGATTTGGTA 58.575 29.630 27.19 1.06 41.82 3.25
62 63 7.278875 AACATGGTTGTACAAAATGATTTGGT 58.721 30.769 27.19 3.12 41.82 3.67
63 64 7.656948 AGAACATGGTTGTACAAAATGATTTGG 59.343 33.333 27.19 9.95 41.82 3.28
64 65 8.592105 AGAACATGGTTGTACAAAATGATTTG 57.408 30.769 27.19 14.67 42.53 2.32
65 66 9.044150 CAAGAACATGGTTGTACAAAATGATTT 57.956 29.630 27.19 17.37 34.06 2.17
66 67 8.203485 ACAAGAACATGGTTGTACAAAATGATT 58.797 29.630 27.19 19.96 35.10 2.57
67 68 7.652909 CACAAGAACATGGTTGTACAAAATGAT 59.347 33.333 27.19 20.15 35.10 2.45
68 69 6.977502 CACAAGAACATGGTTGTACAAAATGA 59.022 34.615 27.19 8.82 35.10 2.57
69 70 6.200665 CCACAAGAACATGGTTGTACAAAATG 59.799 38.462 22.17 22.17 35.10 2.32
70 71 6.279882 CCACAAGAACATGGTTGTACAAAAT 58.720 36.000 10.51 4.55 35.10 1.82
71 72 5.655488 CCACAAGAACATGGTTGTACAAAA 58.345 37.500 10.51 2.03 35.10 2.44
72 73 4.440802 GCCACAAGAACATGGTTGTACAAA 60.441 41.667 10.51 0.00 38.34 2.83
73 74 3.067461 GCCACAAGAACATGGTTGTACAA 59.933 43.478 3.59 3.59 38.34 2.41
74 75 2.621055 GCCACAAGAACATGGTTGTACA 59.379 45.455 9.29 0.00 38.34 2.90
75 76 2.350388 CGCCACAAGAACATGGTTGTAC 60.350 50.000 9.29 5.50 38.34 2.90
76 77 1.876799 CGCCACAAGAACATGGTTGTA 59.123 47.619 9.29 0.00 38.34 2.41
77 78 0.667993 CGCCACAAGAACATGGTTGT 59.332 50.000 0.00 0.91 38.34 3.32
78 79 0.667993 ACGCCACAAGAACATGGTTG 59.332 50.000 0.00 0.22 38.34 3.77
79 80 2.264005 TACGCCACAAGAACATGGTT 57.736 45.000 0.00 0.00 38.34 3.67
80 81 2.027192 AGATACGCCACAAGAACATGGT 60.027 45.455 0.00 0.00 38.34 3.55
81 82 2.632377 AGATACGCCACAAGAACATGG 58.368 47.619 0.00 0.00 39.16 3.66
82 83 5.991328 AATAGATACGCCACAAGAACATG 57.009 39.130 0.00 0.00 0.00 3.21
83 84 7.272978 AGTAAATAGATACGCCACAAGAACAT 58.727 34.615 0.00 0.00 0.00 2.71
84 85 6.636705 AGTAAATAGATACGCCACAAGAACA 58.363 36.000 0.00 0.00 0.00 3.18
85 86 7.535489 AAGTAAATAGATACGCCACAAGAAC 57.465 36.000 0.00 0.00 0.00 3.01
86 87 8.689061 TCTAAGTAAATAGATACGCCACAAGAA 58.311 33.333 0.00 0.00 0.00 2.52
87 88 8.229253 TCTAAGTAAATAGATACGCCACAAGA 57.771 34.615 0.00 0.00 0.00 3.02
88 89 9.477484 AATCTAAGTAAATAGATACGCCACAAG 57.523 33.333 0.00 0.00 40.82 3.16
92 93 9.582431 GCATAATCTAAGTAAATAGATACGCCA 57.418 33.333 0.00 0.00 40.82 5.69
93 94 9.804758 AGCATAATCTAAGTAAATAGATACGCC 57.195 33.333 0.00 0.00 40.82 5.68
104 105 9.197306 TGAGTACAAGGAGCATAATCTAAGTAA 57.803 33.333 0.00 0.00 0.00 2.24
105 106 8.630917 GTGAGTACAAGGAGCATAATCTAAGTA 58.369 37.037 0.00 0.00 0.00 2.24
106 107 7.418025 GGTGAGTACAAGGAGCATAATCTAAGT 60.418 40.741 0.00 0.00 0.00 2.24
107 108 6.926272 GGTGAGTACAAGGAGCATAATCTAAG 59.074 42.308 0.00 0.00 0.00 2.18
108 109 6.382859 TGGTGAGTACAAGGAGCATAATCTAA 59.617 38.462 0.00 0.00 0.00 2.10
109 110 5.897250 TGGTGAGTACAAGGAGCATAATCTA 59.103 40.000 0.00 0.00 0.00 1.98
110 111 4.716784 TGGTGAGTACAAGGAGCATAATCT 59.283 41.667 0.00 0.00 0.00 2.40
111 112 5.023533 TGGTGAGTACAAGGAGCATAATC 57.976 43.478 0.00 0.00 0.00 1.75
112 113 5.435686 TTGGTGAGTACAAGGAGCATAAT 57.564 39.130 0.00 0.00 0.00 1.28
113 114 4.901197 TTGGTGAGTACAAGGAGCATAA 57.099 40.909 0.00 0.00 0.00 1.90
114 115 4.901197 TTTGGTGAGTACAAGGAGCATA 57.099 40.909 0.00 0.00 0.00 3.14
115 116 3.788227 TTTGGTGAGTACAAGGAGCAT 57.212 42.857 0.00 0.00 0.00 3.79
116 117 3.327757 AGATTTGGTGAGTACAAGGAGCA 59.672 43.478 0.00 0.00 0.00 4.26
117 118 3.686726 CAGATTTGGTGAGTACAAGGAGC 59.313 47.826 0.00 0.00 0.00 4.70
118 119 4.256920 CCAGATTTGGTGAGTACAAGGAG 58.743 47.826 0.00 0.00 39.79 3.69
119 120 4.286297 CCAGATTTGGTGAGTACAAGGA 57.714 45.455 0.00 0.00 39.79 3.36
132 133 2.223735 GCATGCCAGATCACCAGATTTG 60.224 50.000 6.36 0.00 36.42 2.32
133 134 2.029623 GCATGCCAGATCACCAGATTT 58.970 47.619 6.36 0.00 33.72 2.17
134 135 1.688772 GCATGCCAGATCACCAGATT 58.311 50.000 6.36 0.00 33.72 2.40
135 136 0.178998 GGCATGCCAGATCACCAGAT 60.179 55.000 32.08 0.00 34.83 2.90
136 137 1.225426 GGCATGCCAGATCACCAGA 59.775 57.895 32.08 0.00 35.81 3.86
137 138 0.818445 GAGGCATGCCAGATCACCAG 60.818 60.000 37.18 0.00 38.92 4.00
138 139 1.225426 GAGGCATGCCAGATCACCA 59.775 57.895 37.18 0.00 38.92 4.17
139 140 1.890979 CGAGGCATGCCAGATCACC 60.891 63.158 37.18 15.55 38.92 4.02
140 141 1.890979 CCGAGGCATGCCAGATCAC 60.891 63.158 37.18 18.80 38.92 3.06
141 142 1.913951 AACCGAGGCATGCCAGATCA 61.914 55.000 37.18 0.00 38.92 2.92
142 143 0.749454 AAACCGAGGCATGCCAGATC 60.749 55.000 37.18 24.66 38.92 2.75
143 144 1.033746 CAAACCGAGGCATGCCAGAT 61.034 55.000 37.18 18.60 38.92 2.90
144 145 1.675310 CAAACCGAGGCATGCCAGA 60.675 57.895 37.18 0.00 38.92 3.86
145 146 2.879907 CAAACCGAGGCATGCCAG 59.120 61.111 37.18 28.47 38.92 4.85
146 147 3.372730 GCAAACCGAGGCATGCCA 61.373 61.111 37.18 0.00 38.92 4.92
148 149 3.346631 CTGGCAAACCGAGGCATGC 62.347 63.158 9.90 9.90 40.96 4.06
149 150 1.526575 AACTGGCAAACCGAGGCATG 61.527 55.000 0.00 0.00 40.96 4.06
150 151 0.827507 AAACTGGCAAACCGAGGCAT 60.828 50.000 0.00 0.00 40.96 4.40
151 152 1.040339 AAAACTGGCAAACCGAGGCA 61.040 50.000 0.00 0.00 39.70 4.75
152 153 0.597377 CAAAACTGGCAAACCGAGGC 60.597 55.000 0.00 0.00 39.70 4.70
153 154 0.744281 ACAAAACTGGCAAACCGAGG 59.256 50.000 0.00 0.00 39.70 4.63
154 155 2.577449 AACAAAACTGGCAAACCGAG 57.423 45.000 0.00 0.00 39.70 4.63
155 156 3.056465 AGAAAACAAAACTGGCAAACCGA 60.056 39.130 0.00 0.00 39.70 4.69
156 157 3.258228 AGAAAACAAAACTGGCAAACCG 58.742 40.909 0.00 0.00 39.70 4.44
157 158 6.714492 CAATAGAAAACAAAACTGGCAAACC 58.286 36.000 0.00 0.00 0.00 3.27
158 159 6.191661 GCAATAGAAAACAAAACTGGCAAAC 58.808 36.000 0.00 0.00 0.00 2.93
159 160 5.295540 GGCAATAGAAAACAAAACTGGCAAA 59.704 36.000 0.00 0.00 0.00 3.68
160 161 4.813697 GGCAATAGAAAACAAAACTGGCAA 59.186 37.500 0.00 0.00 0.00 4.52
161 162 4.100808 AGGCAATAGAAAACAAAACTGGCA 59.899 37.500 0.00 0.00 0.00 4.92
162 163 4.631131 AGGCAATAGAAAACAAAACTGGC 58.369 39.130 0.00 0.00 0.00 4.85
163 164 8.190784 CCTATAGGCAATAGAAAACAAAACTGG 58.809 37.037 5.67 0.00 40.16 4.00
164 165 8.956426 TCCTATAGGCAATAGAAAACAAAACTG 58.044 33.333 14.50 0.00 40.16 3.16
165 166 9.178758 CTCCTATAGGCAATAGAAAACAAAACT 57.821 33.333 14.50 0.00 40.16 2.66
166 167 8.957466 ACTCCTATAGGCAATAGAAAACAAAAC 58.043 33.333 14.50 0.00 40.16 2.43
173 174 9.524496 TCGTATTACTCCTATAGGCAATAGAAA 57.476 33.333 14.50 2.07 40.16 2.52
174 175 8.954350 GTCGTATTACTCCTATAGGCAATAGAA 58.046 37.037 14.50 2.85 40.16 2.10
175 176 8.105197 TGTCGTATTACTCCTATAGGCAATAGA 58.895 37.037 14.50 12.05 40.16 1.98
176 177 8.182881 GTGTCGTATTACTCCTATAGGCAATAG 58.817 40.741 14.50 8.68 37.84 1.73
177 178 7.886970 AGTGTCGTATTACTCCTATAGGCAATA 59.113 37.037 14.50 13.31 34.44 1.90
178 179 6.720288 AGTGTCGTATTACTCCTATAGGCAAT 59.280 38.462 14.50 14.21 34.44 3.56
179 180 6.066690 AGTGTCGTATTACTCCTATAGGCAA 58.933 40.000 14.50 8.16 34.44 4.52
180 181 5.628130 AGTGTCGTATTACTCCTATAGGCA 58.372 41.667 14.50 2.51 34.44 4.75
181 182 6.572167 AAGTGTCGTATTACTCCTATAGGC 57.428 41.667 14.50 0.00 34.44 3.93
190 191 9.622004 CCGATCAATAATAAGTGTCGTATTACT 57.378 33.333 0.00 0.00 0.00 2.24
191 192 9.616634 TCCGATCAATAATAAGTGTCGTATTAC 57.383 33.333 0.00 0.00 0.00 1.89
192 193 9.836076 CTCCGATCAATAATAAGTGTCGTATTA 57.164 33.333 0.00 0.00 0.00 0.98
193 194 7.813148 CCTCCGATCAATAATAAGTGTCGTATT 59.187 37.037 0.00 0.00 0.00 1.89
194 195 7.313646 CCTCCGATCAATAATAAGTGTCGTAT 58.686 38.462 0.00 0.00 0.00 3.06
195 196 6.294342 CCCTCCGATCAATAATAAGTGTCGTA 60.294 42.308 0.00 0.00 0.00 3.43
196 197 5.509163 CCCTCCGATCAATAATAAGTGTCGT 60.509 44.000 0.00 0.00 0.00 4.34
197 198 4.923871 CCCTCCGATCAATAATAAGTGTCG 59.076 45.833 0.00 0.00 0.00 4.35
198 199 6.097915 TCCCTCCGATCAATAATAAGTGTC 57.902 41.667 0.00 0.00 0.00 3.67
199 200 5.602978 ACTCCCTCCGATCAATAATAAGTGT 59.397 40.000 0.00 0.00 0.00 3.55
200 201 6.102897 ACTCCCTCCGATCAATAATAAGTG 57.897 41.667 0.00 0.00 0.00 3.16
201 202 6.781014 TGTACTCCCTCCGATCAATAATAAGT 59.219 38.462 0.00 0.00 0.00 2.24
202 203 7.228314 TGTACTCCCTCCGATCAATAATAAG 57.772 40.000 0.00 0.00 0.00 1.73
203 204 7.792364 ATGTACTCCCTCCGATCAATAATAA 57.208 36.000 0.00 0.00 0.00 1.40
204 205 9.132923 GATATGTACTCCCTCCGATCAATAATA 57.867 37.037 0.00 0.00 0.00 0.98
205 206 7.619698 TGATATGTACTCCCTCCGATCAATAAT 59.380 37.037 0.00 0.00 0.00 1.28
206 207 6.951778 TGATATGTACTCCCTCCGATCAATAA 59.048 38.462 0.00 0.00 0.00 1.40
207 208 6.490492 TGATATGTACTCCCTCCGATCAATA 58.510 40.000 0.00 0.00 0.00 1.90
208 209 5.333581 TGATATGTACTCCCTCCGATCAAT 58.666 41.667 0.00 0.00 0.00 2.57
209 210 4.736473 TGATATGTACTCCCTCCGATCAA 58.264 43.478 0.00 0.00 0.00 2.57
210 211 4.382386 TGATATGTACTCCCTCCGATCA 57.618 45.455 0.00 0.00 0.00 2.92
211 212 6.358178 TCTATGATATGTACTCCCTCCGATC 58.642 44.000 0.00 0.00 0.00 3.69
212 213 6.328782 TCTATGATATGTACTCCCTCCGAT 57.671 41.667 0.00 0.00 0.00 4.18
213 214 5.339282 CCTCTATGATATGTACTCCCTCCGA 60.339 48.000 0.00 0.00 0.00 4.55
214 215 4.884744 CCTCTATGATATGTACTCCCTCCG 59.115 50.000 0.00 0.00 0.00 4.63
215 216 4.647399 GCCTCTATGATATGTACTCCCTCC 59.353 50.000 0.00 0.00 0.00 4.30
216 217 5.515106 AGCCTCTATGATATGTACTCCCTC 58.485 45.833 0.00 0.00 0.00 4.30
217 218 5.015710 TGAGCCTCTATGATATGTACTCCCT 59.984 44.000 0.00 0.00 0.00 4.20
218 219 5.265191 TGAGCCTCTATGATATGTACTCCC 58.735 45.833 0.00 0.00 0.00 4.30
219 220 7.416964 AATGAGCCTCTATGATATGTACTCC 57.583 40.000 0.00 0.00 0.00 3.85
220 221 7.763528 CCAAATGAGCCTCTATGATATGTACTC 59.236 40.741 0.00 0.00 0.00 2.59
221 222 7.236432 ACCAAATGAGCCTCTATGATATGTACT 59.764 37.037 0.00 0.00 0.00 2.73
222 223 7.390027 ACCAAATGAGCCTCTATGATATGTAC 58.610 38.462 0.00 0.00 0.00 2.90
223 224 7.559335 ACCAAATGAGCCTCTATGATATGTA 57.441 36.000 0.00 0.00 0.00 2.29
224 225 6.445451 ACCAAATGAGCCTCTATGATATGT 57.555 37.500 0.00 0.00 0.00 2.29
225 226 6.349115 GCAACCAAATGAGCCTCTATGATATG 60.349 42.308 0.00 0.00 0.00 1.78
226 227 5.709164 GCAACCAAATGAGCCTCTATGATAT 59.291 40.000 0.00 0.00 0.00 1.63
227 228 5.065914 GCAACCAAATGAGCCTCTATGATA 58.934 41.667 0.00 0.00 0.00 2.15
228 229 3.887716 GCAACCAAATGAGCCTCTATGAT 59.112 43.478 0.00 0.00 0.00 2.45
229 230 3.282021 GCAACCAAATGAGCCTCTATGA 58.718 45.455 0.00 0.00 0.00 2.15
230 231 2.032550 CGCAACCAAATGAGCCTCTATG 59.967 50.000 0.00 0.00 0.00 2.23
231 232 2.292267 CGCAACCAAATGAGCCTCTAT 58.708 47.619 0.00 0.00 0.00 1.98
232 233 1.678728 CCGCAACCAAATGAGCCTCTA 60.679 52.381 0.00 0.00 0.00 2.43
233 234 0.962356 CCGCAACCAAATGAGCCTCT 60.962 55.000 0.00 0.00 0.00 3.69
234 235 1.508088 CCGCAACCAAATGAGCCTC 59.492 57.895 0.00 0.00 0.00 4.70
235 236 2.639327 GCCGCAACCAAATGAGCCT 61.639 57.895 0.00 0.00 0.00 4.58
236 237 2.125952 GCCGCAACCAAATGAGCC 60.126 61.111 0.00 0.00 0.00 4.70
237 238 1.312371 TAGGCCGCAACCAAATGAGC 61.312 55.000 0.00 0.00 0.00 4.26
238 239 0.451783 GTAGGCCGCAACCAAATGAG 59.548 55.000 0.00 0.00 0.00 2.90
239 240 0.037590 AGTAGGCCGCAACCAAATGA 59.962 50.000 0.00 0.00 0.00 2.57
240 241 1.670811 CTAGTAGGCCGCAACCAAATG 59.329 52.381 0.00 0.00 0.00 2.32
241 242 1.280998 ACTAGTAGGCCGCAACCAAAT 59.719 47.619 0.00 0.00 0.00 2.32
242 243 0.688487 ACTAGTAGGCCGCAACCAAA 59.312 50.000 0.00 0.00 0.00 3.28
243 244 1.479323 CTACTAGTAGGCCGCAACCAA 59.521 52.381 20.44 0.00 0.00 3.67
244 245 1.108776 CTACTAGTAGGCCGCAACCA 58.891 55.000 20.44 0.00 0.00 3.67
245 246 0.388294 CCTACTAGTAGGCCGCAACC 59.612 60.000 31.23 0.00 45.36 3.77
246 247 3.961576 CCTACTAGTAGGCCGCAAC 57.038 57.895 31.23 0.00 45.36 4.17
254 255 7.436933 TCATGCATCACAAATCCTACTAGTAG 58.563 38.462 21.11 21.11 0.00 2.57
255 256 7.360113 TCATGCATCACAAATCCTACTAGTA 57.640 36.000 0.00 1.89 0.00 1.82
256 257 6.239217 TCATGCATCACAAATCCTACTAGT 57.761 37.500 0.00 0.00 0.00 2.57
257 258 5.699915 CCTCATGCATCACAAATCCTACTAG 59.300 44.000 0.00 0.00 0.00 2.57
258 259 5.614308 CCTCATGCATCACAAATCCTACTA 58.386 41.667 0.00 0.00 0.00 1.82
259 260 4.458397 CCTCATGCATCACAAATCCTACT 58.542 43.478 0.00 0.00 0.00 2.57
260 261 3.004106 GCCTCATGCATCACAAATCCTAC 59.996 47.826 0.00 0.00 40.77 3.18
261 262 3.117776 AGCCTCATGCATCACAAATCCTA 60.118 43.478 0.00 0.00 44.83 2.94
262 263 2.029623 GCCTCATGCATCACAAATCCT 58.970 47.619 0.00 0.00 40.77 3.24
263 264 2.029623 AGCCTCATGCATCACAAATCC 58.970 47.619 0.00 0.00 44.83 3.01
264 265 2.686405 TGAGCCTCATGCATCACAAATC 59.314 45.455 0.00 0.00 44.83 2.17
265 266 2.730382 TGAGCCTCATGCATCACAAAT 58.270 42.857 0.00 0.00 44.83 2.32
266 267 2.203470 TGAGCCTCATGCATCACAAA 57.797 45.000 0.00 0.00 44.83 2.83
267 268 2.430248 ATGAGCCTCATGCATCACAA 57.570 45.000 6.37 0.00 44.83 3.33
268 269 2.430248 AATGAGCCTCATGCATCACA 57.570 45.000 8.21 0.00 44.83 3.58
269 270 2.950309 AGAAATGAGCCTCATGCATCAC 59.050 45.455 8.21 0.00 44.83 3.06
270 271 3.118000 AGAGAAATGAGCCTCATGCATCA 60.118 43.478 8.21 0.00 44.83 3.07
271 272 3.478509 AGAGAAATGAGCCTCATGCATC 58.521 45.455 8.21 7.53 44.83 3.91
272 273 3.579534 AGAGAAATGAGCCTCATGCAT 57.420 42.857 8.21 0.00 44.83 3.96
273 274 3.198417 TGTAGAGAAATGAGCCTCATGCA 59.802 43.478 8.21 0.00 44.83 3.96
274 275 3.801698 TGTAGAGAAATGAGCCTCATGC 58.198 45.455 8.21 3.89 37.15 4.06
275 276 6.939132 AAATGTAGAGAAATGAGCCTCATG 57.061 37.500 8.21 0.00 37.15 3.07
276 277 7.951347 AAAAATGTAGAGAAATGAGCCTCAT 57.049 32.000 0.08 0.08 39.09 2.90
317 318 2.216750 AATTGTCGCACATGGCTGCC 62.217 55.000 12.87 12.87 41.67 4.85
318 319 0.388907 AAATTGTCGCACATGGCTGC 60.389 50.000 0.00 0.00 41.67 5.25
319 320 2.917701 TAAATTGTCGCACATGGCTG 57.082 45.000 0.00 0.00 41.67 4.85
320 321 4.175516 CAAATAAATTGTCGCACATGGCT 58.824 39.130 0.00 0.00 35.76 4.75
321 322 4.503767 CAAATAAATTGTCGCACATGGC 57.496 40.909 0.00 0.00 35.05 4.40
337 338 9.521841 TCCAACCATAATACAGTTCAACAAATA 57.478 29.630 0.00 0.00 0.00 1.40
338 339 8.415950 TCCAACCATAATACAGTTCAACAAAT 57.584 30.769 0.00 0.00 0.00 2.32
339 340 7.825331 TCCAACCATAATACAGTTCAACAAA 57.175 32.000 0.00 0.00 0.00 2.83
340 341 7.667635 TCATCCAACCATAATACAGTTCAACAA 59.332 33.333 0.00 0.00 0.00 2.83
341 342 7.171653 TCATCCAACCATAATACAGTTCAACA 58.828 34.615 0.00 0.00 0.00 3.33
342 343 7.624360 TCATCCAACCATAATACAGTTCAAC 57.376 36.000 0.00 0.00 0.00 3.18
343 344 8.052141 TCATCATCCAACCATAATACAGTTCAA 58.948 33.333 0.00 0.00 0.00 2.69
344 345 7.572814 TCATCATCCAACCATAATACAGTTCA 58.427 34.615 0.00 0.00 0.00 3.18
345 346 8.345565 GTTCATCATCCAACCATAATACAGTTC 58.654 37.037 0.00 0.00 0.00 3.01
346 347 8.055181 AGTTCATCATCCAACCATAATACAGTT 58.945 33.333 0.00 0.00 0.00 3.16
347 348 7.577303 AGTTCATCATCCAACCATAATACAGT 58.423 34.615 0.00 0.00 0.00 3.55
348 349 8.455903 AAGTTCATCATCCAACCATAATACAG 57.544 34.615 0.00 0.00 0.00 2.74
349 350 8.685427 CAAAGTTCATCATCCAACCATAATACA 58.315 33.333 0.00 0.00 0.00 2.29
350 351 8.902806 TCAAAGTTCATCATCCAACCATAATAC 58.097 33.333 0.00 0.00 0.00 1.89
351 352 9.645128 ATCAAAGTTCATCATCCAACCATAATA 57.355 29.630 0.00 0.00 0.00 0.98
352 353 7.959658 TCAAAGTTCATCATCCAACCATAAT 57.040 32.000 0.00 0.00 0.00 1.28
353 354 7.835682 AGATCAAAGTTCATCATCCAACCATAA 59.164 33.333 0.00 0.00 0.00 1.90
354 355 7.283807 CAGATCAAAGTTCATCATCCAACCATA 59.716 37.037 0.00 0.00 0.00 2.74
355 356 6.096423 CAGATCAAAGTTCATCATCCAACCAT 59.904 38.462 0.00 0.00 0.00 3.55
356 357 5.416639 CAGATCAAAGTTCATCATCCAACCA 59.583 40.000 0.00 0.00 0.00 3.67
357 358 5.649395 TCAGATCAAAGTTCATCATCCAACC 59.351 40.000 0.00 0.00 0.00 3.77
358 359 6.748333 TCAGATCAAAGTTCATCATCCAAC 57.252 37.500 0.00 0.00 0.00 3.77
359 360 9.465199 TTTATCAGATCAAAGTTCATCATCCAA 57.535 29.630 0.00 0.00 0.00 3.53
360 361 9.636789 ATTTATCAGATCAAAGTTCATCATCCA 57.363 29.630 0.00 0.00 0.00 3.41
370 371 9.247861 ACAGCCTTTTATTTATCAGATCAAAGT 57.752 29.630 0.00 0.00 0.00 2.66
371 372 9.512435 CACAGCCTTTTATTTATCAGATCAAAG 57.488 33.333 0.00 0.00 0.00 2.77
372 373 9.023962 ACACAGCCTTTTATTTATCAGATCAAA 57.976 29.630 0.00 0.00 0.00 2.69
373 374 8.461222 CACACAGCCTTTTATTTATCAGATCAA 58.539 33.333 0.00 0.00 0.00 2.57
374 375 7.415541 GCACACAGCCTTTTATTTATCAGATCA 60.416 37.037 0.00 0.00 37.23 2.92
375 376 6.914757 GCACACAGCCTTTTATTTATCAGATC 59.085 38.462 0.00 0.00 37.23 2.75
376 377 6.799512 GCACACAGCCTTTTATTTATCAGAT 58.200 36.000 0.00 0.00 37.23 2.90
377 378 6.194796 GCACACAGCCTTTTATTTATCAGA 57.805 37.500 0.00 0.00 37.23 3.27
392 393 6.910536 ATTATAACTCTAACAGCACACAGC 57.089 37.500 0.00 0.00 46.19 4.40
883 1015 3.637273 GACGGGAGGTGGGTTGCT 61.637 66.667 0.00 0.00 0.00 3.91
923 1055 3.785859 GGATCTGGCACGGGAGCA 61.786 66.667 0.00 0.00 35.83 4.26
996 1133 1.203052 CCCGATGCAGCAGACATTTTT 59.797 47.619 1.53 0.00 0.00 1.94
1037 1175 1.414158 ACCATCGAAGATCACCGGAT 58.586 50.000 9.46 0.00 45.12 4.18
1179 1317 0.680061 GAAGAACCAGTGGAGTCGGT 59.320 55.000 18.40 6.39 33.32 4.69
1242 1380 1.202234 ACACGATCAGCAGTCTCATCG 60.202 52.381 0.00 0.00 43.06 3.84
1262 1400 4.934356 AGCCAAAACCCTCTCATCATAAA 58.066 39.130 0.00 0.00 0.00 1.40
1674 1812 0.611714 GGGGCTCAAACTCCTTACGA 59.388 55.000 0.00 0.00 0.00 3.43
1847 1985 1.139734 GCACTCGAGCGAGAATGGA 59.860 57.895 24.81 0.00 44.53 3.41
2494 2638 1.897802 GTCCAACTCCGAAAGACCCTA 59.102 52.381 0.00 0.00 0.00 3.53
2504 2648 0.036010 ATGAAGCCAGTCCAACTCCG 60.036 55.000 0.00 0.00 0.00 4.63
2744 2888 0.522180 AGGACGCTTAGACACTGACG 59.478 55.000 0.00 0.00 0.00 4.35
2792 2936 1.375523 GAAGCGAAAGGAGCCGGAA 60.376 57.895 5.05 0.00 34.64 4.30
2844 2988 6.622679 GCCATGTGTAACGAGAAAAATCATCA 60.623 38.462 0.00 0.00 42.39 3.07
3174 3318 3.181456 GCTGAAGGTTGATGAGATAGGCT 60.181 47.826 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.