Multiple sequence alignment - TraesCS7D01G297800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G297800 chr7D 100.000 5470 0 0 1 5470 376564626 376559157 0.000000e+00 10102.0
1 TraesCS7D01G297800 chr7D 83.333 870 115 20 1 850 125910535 125911394 0.000000e+00 776.0
2 TraesCS7D01G297800 chr7A 90.684 1739 121 25 1 1714 424321357 424319635 0.000000e+00 2276.0
3 TraesCS7D01G297800 chr7A 87.290 1188 75 22 1768 2916 424319636 424318486 0.000000e+00 1288.0
4 TraesCS7D01G297800 chr7A 88.824 689 46 11 3010 3690 424318487 424317822 0.000000e+00 817.0
5 TraesCS7D01G297800 chr7A 84.644 801 106 12 1 788 518552066 518551270 0.000000e+00 782.0
6 TraesCS7D01G297800 chr7A 87.638 542 34 15 4335 4865 424317027 424316508 2.820000e-167 599.0
7 TraesCS7D01G297800 chr7A 97.288 295 7 1 5177 5470 424316195 424315901 2.940000e-137 499.0
8 TraesCS7D01G297800 chr7A 92.941 340 13 6 3676 4008 424317751 424317416 8.240000e-133 484.0
9 TraesCS7D01G297800 chr7A 92.760 221 5 4 4007 4216 424317363 424317143 5.320000e-80 309.0
10 TraesCS7D01G297800 chr7B 91.676 901 44 8 3095 3987 371735492 371734615 0.000000e+00 1219.0
11 TraesCS7D01G297800 chr7B 89.032 1012 51 22 862 1862 371737815 371736853 0.000000e+00 1199.0
12 TraesCS7D01G297800 chr7B 88.549 1013 67 14 1918 2916 371736610 371735633 0.000000e+00 1182.0
13 TraesCS7D01G297800 chr7B 87.254 863 90 13 1 852 371744063 371743210 0.000000e+00 966.0
14 TraesCS7D01G297800 chr7B 90.441 544 38 10 4335 4865 371734181 371733639 0.000000e+00 704.0
15 TraesCS7D01G297800 chr7B 89.493 276 22 5 5132 5401 371733146 371732872 5.250000e-90 342.0
16 TraesCS7D01G297800 chr7B 91.403 221 8 5 4007 4216 371734546 371734326 5.360000e-75 292.0
17 TraesCS7D01G297800 chr7B 84.211 285 24 13 4871 5135 371733587 371733304 1.950000e-64 257.0
18 TraesCS7D01G297800 chr7B 95.714 70 3 0 4241 4310 371734238 371734169 4.480000e-21 113.0
19 TraesCS7D01G297800 chr7B 95.745 47 1 1 1871 1917 371736674 371736629 2.110000e-09 75.0
20 TraesCS7D01G297800 chr1B 83.392 849 118 15 22 852 598845605 598846448 0.000000e+00 765.0
21 TraesCS7D01G297800 chr1B 83.066 809 118 15 6 803 632773660 632772860 0.000000e+00 717.0
22 TraesCS7D01G297800 chr1B 100.000 28 0 0 4308 4335 30008193 30008220 1.000000e-02 52.8
23 TraesCS7D01G297800 chr6D 82.604 868 126 17 1 852 15396416 15397274 0.000000e+00 743.0
24 TraesCS7D01G297800 chr6D 100.000 28 0 0 4308 4335 65485622 65485649 1.000000e-02 52.8
25 TraesCS7D01G297800 chr6A 83.924 790 107 14 1 779 495455571 495454791 0.000000e+00 737.0
26 TraesCS7D01G297800 chr2D 84.739 747 98 10 21 756 304334225 304334966 0.000000e+00 734.0
27 TraesCS7D01G297800 chr5A 86.567 335 42 3 3087 3420 32952657 32952325 3.110000e-97 366.0
28 TraesCS7D01G297800 chr3A 86.567 335 41 4 3087 3420 336005842 336005511 3.110000e-97 366.0
29 TraesCS7D01G297800 chr6B 86.850 327 41 2 3087 3412 80801036 80801361 1.120000e-96 364.0
30 TraesCS7D01G297800 chrUn 86.269 335 43 3 3087 3420 73441466 73441798 1.450000e-95 361.0
31 TraesCS7D01G297800 chr5B 86.310 336 41 5 3087 3420 52319185 52319517 1.450000e-95 361.0
32 TraesCS7D01G297800 chr5B 86.239 327 43 2 3087 3412 535100570 535100245 2.420000e-93 353.0
33 TraesCS7D01G297800 chr2B 88.024 167 18 2 3087 3252 657481833 657481668 4.320000e-46 196.0
34 TraesCS7D01G297800 chr2B 100.000 28 0 0 4308 4335 798341987 798341960 1.000000e-02 52.8
35 TraesCS7D01G297800 chr4D 92.727 110 6 2 2907 3015 177433309 177433201 2.040000e-34 158.0
36 TraesCS7D01G297800 chr4D 89.831 118 10 2 2896 3012 13198263 13198379 3.410000e-32 150.0
37 TraesCS7D01G297800 chr2A 93.333 105 6 1 2908 3012 68155926 68155823 2.640000e-33 154.0
38 TraesCS7D01G297800 chr2A 92.453 106 6 2 2912 3015 660286771 660286876 3.410000e-32 150.0
39 TraesCS7D01G297800 chr2A 100.000 28 0 0 4308 4335 87661212 87661185 1.000000e-02 52.8
40 TraesCS7D01G297800 chr3D 93.269 104 5 2 2915 3016 71512908 71512805 9.490000e-33 152.0
41 TraesCS7D01G297800 chr1D 91.743 109 9 0 2908 3016 225936845 225936953 9.490000e-33 152.0
42 TraesCS7D01G297800 chr1D 91.589 107 9 0 2908 3014 225943935 225944041 1.230000e-31 148.0
43 TraesCS7D01G297800 chr1D 90.826 109 10 0 2906 3014 220408731 220408839 4.420000e-31 147.0
44 TraesCS7D01G297800 chr4B 91.667 108 7 2 2905 3011 646855886 646855992 1.230000e-31 148.0
45 TraesCS7D01G297800 chr3B 100.000 28 0 0 823 850 167777816 167777789 1.000000e-02 52.8
46 TraesCS7D01G297800 chr3B 100.000 28 0 0 4308 4335 445172346 445172319 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G297800 chr7D 376559157 376564626 5469 True 10102.000000 10102 100.000000 1 5470 1 chr7D.!!$R1 5469
1 TraesCS7D01G297800 chr7D 125910535 125911394 859 False 776.000000 776 83.333000 1 850 1 chr7D.!!$F1 849
2 TraesCS7D01G297800 chr7A 424315901 424321357 5456 True 896.000000 2276 91.060714 1 5470 7 chr7A.!!$R2 5469
3 TraesCS7D01G297800 chr7A 518551270 518552066 796 True 782.000000 782 84.644000 1 788 1 chr7A.!!$R1 787
4 TraesCS7D01G297800 chr7B 371743210 371744063 853 True 966.000000 966 87.254000 1 852 1 chr7B.!!$R1 851
5 TraesCS7D01G297800 chr7B 371732872 371737815 4943 True 598.111111 1219 90.696000 862 5401 9 chr7B.!!$R2 4539
6 TraesCS7D01G297800 chr1B 598845605 598846448 843 False 765.000000 765 83.392000 22 852 1 chr1B.!!$F2 830
7 TraesCS7D01G297800 chr1B 632772860 632773660 800 True 717.000000 717 83.066000 6 803 1 chr1B.!!$R1 797
8 TraesCS7D01G297800 chr6D 15396416 15397274 858 False 743.000000 743 82.604000 1 852 1 chr6D.!!$F1 851
9 TraesCS7D01G297800 chr6A 495454791 495455571 780 True 737.000000 737 83.924000 1 779 1 chr6A.!!$R1 778
10 TraesCS7D01G297800 chr2D 304334225 304334966 741 False 734.000000 734 84.739000 21 756 1 chr2D.!!$F1 735


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
942 980 0.389426 GCTCACCGGCTCGTTCTTAA 60.389 55.000 0.0 0.0 0.00 1.85 F
1710 1770 0.462789 AACTCACGTTCCGGTTGACT 59.537 50.000 0.0 0.0 0.00 3.41 F
2092 2339 0.111639 TCCACCCCCAGCAAGTAAAC 59.888 55.000 0.0 0.0 0.00 2.01 F
2093 2340 0.178975 CCACCCCCAGCAAGTAAACA 60.179 55.000 0.0 0.0 0.00 2.83 F
2244 2491 1.374631 TGTGCATGAGTCGGTCAGC 60.375 57.895 0.0 0.0 39.07 4.26 F
2253 2500 1.936547 GAGTCGGTCAGCAAATCATCC 59.063 52.381 0.0 0.0 0.00 3.51 F
3009 3269 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.0 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 2183 0.108138 CCTGTGCGGGAGAAACCTAG 60.108 60.000 0.00 0.0 38.98 3.02 R
2996 3256 1.140452 GGAAAATACTCCCTCCGTCCC 59.860 57.143 0.00 0.0 0.00 4.46 R
3336 3657 1.377725 CCTGGAAGCTTCACCGCAT 60.378 57.895 27.02 0.0 0.00 4.73 R
3766 4175 1.922447 TCAGCAACCCTTCCATACCAT 59.078 47.619 0.00 0.0 0.00 3.55 R
4108 4573 1.542915 ACCGCACTACTACGACACATT 59.457 47.619 0.00 0.0 0.00 2.71 R
4169 4645 6.225981 TGTATGAGAGCAGTATGAACATGT 57.774 37.500 0.00 0.0 39.69 3.21 R
4869 5417 0.811616 AGATCTTGTCGCAATCGGCC 60.812 55.000 0.00 0.0 40.09 6.13 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 77 5.726980 TTAGTCAAATGCCATTGAGCTTT 57.273 34.783 1.83 0.00 39.84 3.51
103 110 5.702865 ACGCTATGTCGTTTTTAGAGTACA 58.297 37.500 0.00 0.00 40.07 2.90
158 166 3.285816 TGTTGTACGATGCGTAGTTGA 57.714 42.857 0.00 0.00 43.06 3.18
161 169 1.814394 TGTACGATGCGTAGTTGACCT 59.186 47.619 0.00 0.00 43.06 3.85
707 737 6.869315 TTTTGATGAATATCGGCCGATTTA 57.131 33.333 42.74 28.12 36.04 1.40
737 767 8.786826 AATTCTGTCCGATTAGTTCAAATACA 57.213 30.769 0.00 0.00 0.00 2.29
773 803 0.390735 GGTAACGTTGGATGACGGCT 60.391 55.000 11.99 0.00 46.77 5.52
803 833 0.963962 GTGTTCGTGGTCTAGTCCCA 59.036 55.000 3.42 1.85 0.00 4.37
829 867 3.328505 GTGAACGGGAGGAAATTTACGA 58.671 45.455 0.00 0.00 0.00 3.43
834 872 2.547826 GGGAGGAAATTTACGAGTCGG 58.452 52.381 18.30 0.00 0.00 4.79
856 894 3.512680 CGTCGGAGATGCCCTTATATTC 58.487 50.000 0.00 0.00 40.67 1.75
894 932 5.293814 TGTGATTAAACCGAAGAACAAACGA 59.706 36.000 0.00 0.00 0.00 3.85
941 979 1.214589 GCTCACCGGCTCGTTCTTA 59.785 57.895 0.00 0.00 0.00 2.10
942 980 0.389426 GCTCACCGGCTCGTTCTTAA 60.389 55.000 0.00 0.00 0.00 1.85
1026 1071 2.606551 GCTTGAGTGCTGGAGAAAAAGC 60.607 50.000 0.00 0.00 39.96 3.51
1067 1112 1.842010 CCGTATCCCCCTCCCTTCC 60.842 68.421 0.00 0.00 0.00 3.46
1068 1113 1.236282 CGTATCCCCCTCCCTTCCT 59.764 63.158 0.00 0.00 0.00 3.36
1069 1114 0.832559 CGTATCCCCCTCCCTTCCTC 60.833 65.000 0.00 0.00 0.00 3.71
1129 1174 4.168291 GGCCTCCTCAAGCCCGAG 62.168 72.222 0.00 0.00 43.76 4.63
1164 1209 3.273654 ACCTCCCCTCCACTCGGA 61.274 66.667 0.00 0.00 39.79 4.55
1238 1289 2.525381 CCCCTCCTCGGCTGCTAT 60.525 66.667 0.00 0.00 0.00 2.97
1367 1419 1.911702 CTTCCCTCCCCCTTTCCGTC 61.912 65.000 0.00 0.00 0.00 4.79
1441 1493 1.488705 CCTGCCCTTACCCTGTGTGA 61.489 60.000 0.00 0.00 0.00 3.58
1540 1592 3.251729 ACATGACACATGAACTCAACTGC 59.748 43.478 16.86 0.00 0.00 4.40
1542 1594 0.588252 ACACATGAACTCAACTGCGC 59.412 50.000 0.00 0.00 0.00 6.09
1543 1595 0.587768 CACATGAACTCAACTGCGCA 59.412 50.000 10.98 10.98 0.00 6.09
1544 1596 1.198408 CACATGAACTCAACTGCGCAT 59.802 47.619 12.24 0.00 0.00 4.73
1545 1597 2.416202 CACATGAACTCAACTGCGCATA 59.584 45.455 12.24 0.00 0.00 3.14
1557 1609 3.700961 CGCATAGCCGCTTACGTT 58.299 55.556 0.00 0.00 37.70 3.99
1558 1610 1.272715 CGCATAGCCGCTTACGTTG 59.727 57.895 0.00 0.00 37.70 4.10
1584 1644 1.597578 TTGAGAGTGCGTGCATGCA 60.598 52.632 29.30 29.30 43.95 3.96
1661 1721 2.334307 CCTTGTTGTGGCACCTCTG 58.666 57.895 16.26 1.62 0.00 3.35
1707 1767 2.836479 AAAAACTCACGTTCCGGTTG 57.164 45.000 0.00 0.00 31.66 3.77
1710 1770 0.462789 AACTCACGTTCCGGTTGACT 59.537 50.000 0.00 0.00 0.00 3.41
1715 1775 3.346315 TCACGTTCCGGTTGACTATAGA 58.654 45.455 6.78 0.00 0.00 1.98
1728 1788 4.226384 TGACTATAGATCCAGTGTGGCAT 58.774 43.478 6.78 0.00 37.47 4.40
1755 1815 9.724839 TTTCCACTTTTATTTTCGTAACTTCAG 57.275 29.630 0.00 0.00 0.00 3.02
1758 1818 9.724839 CCACTTTTATTTTCGTAACTTCAGAAA 57.275 29.630 0.00 0.00 32.76 2.52
1766 1826 6.476243 TTCGTAACTTCAGAAATGCCTTAC 57.524 37.500 0.00 0.00 0.00 2.34
1818 1878 0.748005 GTGTGTATTCGGGGCATGCT 60.748 55.000 18.92 0.00 0.00 3.79
1846 1906 3.513515 TGCATGTGTATACCACTGTCTCA 59.486 43.478 0.00 0.00 44.81 3.27
1847 1907 4.115516 GCATGTGTATACCACTGTCTCAG 58.884 47.826 0.00 0.00 44.81 3.35
1862 1922 8.633561 CCACTGTCTCAGTTTGATGATATACTA 58.366 37.037 0.00 0.00 42.59 1.82
1922 2169 8.547967 CTTTACCAAAGTTCAGTATAAGCTGA 57.452 34.615 0.00 0.00 43.03 4.26
1948 2195 3.983044 TTCTCTTGCTAGGTTTCTCCC 57.017 47.619 0.00 0.00 36.75 4.30
1996 2243 2.798976 TGCAAATTCTTGGTGCAGAC 57.201 45.000 0.00 0.00 43.09 3.51
2037 2284 5.773575 CGTCTATACTGTATGTGAGCCAAT 58.226 41.667 10.51 0.00 0.00 3.16
2069 2316 3.863142 CTGGATTTTCTTGCCTTCCAG 57.137 47.619 3.11 3.11 45.32 3.86
2071 2318 3.575687 CTGGATTTTCTTGCCTTCCAGTT 59.424 43.478 8.73 0.00 45.45 3.16
2073 2320 4.408596 TGGATTTTCTTGCCTTCCAGTTTT 59.591 37.500 0.00 0.00 32.80 2.43
2074 2321 4.991056 GGATTTTCTTGCCTTCCAGTTTTC 59.009 41.667 0.00 0.00 0.00 2.29
2075 2322 4.400529 TTTTCTTGCCTTCCAGTTTTCC 57.599 40.909 0.00 0.00 0.00 3.13
2076 2323 2.746279 TCTTGCCTTCCAGTTTTCCA 57.254 45.000 0.00 0.00 0.00 3.53
2077 2324 2.306847 TCTTGCCTTCCAGTTTTCCAC 58.693 47.619 0.00 0.00 0.00 4.02
2078 2325 1.341209 CTTGCCTTCCAGTTTTCCACC 59.659 52.381 0.00 0.00 0.00 4.61
2079 2326 0.469144 TGCCTTCCAGTTTTCCACCC 60.469 55.000 0.00 0.00 0.00 4.61
2080 2327 1.185618 GCCTTCCAGTTTTCCACCCC 61.186 60.000 0.00 0.00 0.00 4.95
2092 2339 0.111639 TCCACCCCCAGCAAGTAAAC 59.888 55.000 0.00 0.00 0.00 2.01
2093 2340 0.178975 CCACCCCCAGCAAGTAAACA 60.179 55.000 0.00 0.00 0.00 2.83
2101 2348 4.396166 CCCCAGCAAGTAAACACTTATCAG 59.604 45.833 0.00 0.00 0.00 2.90
2108 2355 7.931948 AGCAAGTAAACACTTATCAGTACTTGT 59.068 33.333 16.31 0.00 42.74 3.16
2109 2356 9.199982 GCAAGTAAACACTTATCAGTACTTGTA 57.800 33.333 16.31 0.00 42.74 2.41
2120 2367 9.701098 CTTATCAGTACTTGTAAGTTGTAACCA 57.299 33.333 12.71 0.00 40.37 3.67
2127 2374 7.272037 ACTTGTAAGTTGTAACCAAAGGATG 57.728 36.000 0.00 0.00 35.21 3.51
2175 2422 9.938280 TTGTACTAAACTAGTAATTGCTGATGT 57.062 29.630 6.28 0.12 42.45 3.06
2188 2435 3.797039 TGCTGATGTGTTATCCTAGCAC 58.203 45.455 0.00 0.00 39.90 4.40
2189 2436 3.452264 TGCTGATGTGTTATCCTAGCACT 59.548 43.478 0.00 0.00 40.11 4.40
2190 2437 4.649218 TGCTGATGTGTTATCCTAGCACTA 59.351 41.667 0.00 0.00 40.11 2.74
2191 2438 5.221322 TGCTGATGTGTTATCCTAGCACTAG 60.221 44.000 0.00 0.00 40.11 2.57
2192 2439 5.201713 TGATGTGTTATCCTAGCACTAGC 57.798 43.478 0.00 0.00 40.11 3.42
2193 2440 4.649218 TGATGTGTTATCCTAGCACTAGCA 59.351 41.667 0.00 0.00 45.49 3.49
2197 2444 5.046591 TGTGTTATCCTAGCACTAGCAAACT 60.047 40.000 0.00 0.00 45.49 2.66
2207 2454 5.535333 AGCACTAGCAAACTAAACGTAGAA 58.465 37.500 0.00 0.00 45.49 2.10
2210 2457 6.128634 GCACTAGCAAACTAAACGTAGAATGT 60.129 38.462 0.00 0.00 41.58 2.71
2212 2459 5.030874 AGCAAACTAAACGTAGAATGTGC 57.969 39.130 0.00 0.00 0.00 4.57
2233 2480 4.142924 TGCGAACAATAACTAGTGTGCATG 60.143 41.667 0.00 0.00 34.43 4.06
2238 2485 4.864806 ACAATAACTAGTGTGCATGAGTCG 59.135 41.667 0.00 0.00 32.76 4.18
2239 2486 2.370281 AACTAGTGTGCATGAGTCGG 57.630 50.000 0.00 0.00 0.00 4.79
2244 2491 1.374631 TGTGCATGAGTCGGTCAGC 60.375 57.895 0.00 0.00 39.07 4.26
2253 2500 1.936547 GAGTCGGTCAGCAAATCATCC 59.063 52.381 0.00 0.00 0.00 3.51
2259 2506 2.450476 GTCAGCAAATCATCCTTGGGT 58.550 47.619 0.00 0.00 0.00 4.51
2267 2514 5.239525 GCAAATCATCCTTGGGTACTGTATC 59.760 44.000 0.00 0.00 0.00 2.24
2270 2517 5.871396 TCATCCTTGGGTACTGTATCTTC 57.129 43.478 0.00 0.00 0.00 2.87
2271 2518 5.529289 TCATCCTTGGGTACTGTATCTTCT 58.471 41.667 0.00 0.00 0.00 2.85
2272 2519 5.363868 TCATCCTTGGGTACTGTATCTTCTG 59.636 44.000 0.00 0.00 0.00 3.02
2308 2555 7.033185 GCACAATAAACCTTCGAATGGTATTT 58.967 34.615 16.39 11.83 36.69 1.40
2309 2556 7.544217 GCACAATAAACCTTCGAATGGTATTTT 59.456 33.333 16.39 11.31 36.69 1.82
2310 2557 8.859156 CACAATAAACCTTCGAATGGTATTTTG 58.141 33.333 16.39 18.31 36.69 2.44
2311 2558 7.544217 ACAATAAACCTTCGAATGGTATTTTGC 59.456 33.333 16.39 0.00 36.69 3.68
2314 2561 4.331968 ACCTTCGAATGGTATTTTGCTGA 58.668 39.130 15.03 0.00 35.80 4.26
2319 2576 7.441157 CCTTCGAATGGTATTTTGCTGATACTA 59.559 37.037 0.00 0.00 32.02 1.82
2346 2604 4.020662 GCCTATCTTACATCCTCCCTTGAG 60.021 50.000 0.00 0.00 38.42 3.02
2361 2619 4.518970 TCCCTTGAGCAGTATTTTGACAAC 59.481 41.667 0.00 0.00 0.00 3.32
2409 2668 2.090760 TCAACTTGTCAAGTGCTGCAA 58.909 42.857 18.84 0.00 41.91 4.08
2428 2687 8.132995 TGCTGCAATTACTGATAATCATTTCAG 58.867 33.333 0.00 7.60 43.97 3.02
2455 2714 6.911250 TTGTGAAGGAGATACTCTTGTACA 57.089 37.500 0.00 0.00 0.00 2.90
2456 2715 6.516739 TGTGAAGGAGATACTCTTGTACAG 57.483 41.667 0.00 0.00 0.00 2.74
2457 2716 6.246163 TGTGAAGGAGATACTCTTGTACAGA 58.754 40.000 0.00 0.00 0.00 3.41
2474 2733 8.589335 TTGTACAGAACAGAAGTAACAAGATC 57.411 34.615 0.00 0.00 39.87 2.75
2599 2858 3.057245 GCTTGTGAAAGGGATGAAAGGTC 60.057 47.826 0.00 0.00 0.00 3.85
2690 2949 4.201657 TGCTTGATATGATCAGTTGGTGG 58.798 43.478 0.09 0.00 40.94 4.61
2747 3006 6.006275 AGTTTACTTCATGGTCCATAGCAT 57.994 37.500 3.38 0.00 44.57 3.79
2809 3069 7.932120 TGGACAACATATTTTTGGTTTAACG 57.068 32.000 0.00 0.00 0.00 3.18
2866 3126 2.040278 CTCAGAAATGGGGAGGACAACA 59.960 50.000 0.00 0.00 0.00 3.33
2887 3147 8.984764 ACAACAAAACCTTCTTTTTAGTTTCAC 58.015 29.630 0.00 0.00 31.47 3.18
2910 3170 8.213679 TCACTTCTCCCTCCTTTATTCATTATG 58.786 37.037 0.00 0.00 0.00 1.90
2924 3184 9.502091 TTTATTCATTATGATTTACTCCCTCCG 57.498 33.333 0.00 0.00 0.00 4.63
2925 3185 6.494666 TTCATTATGATTTACTCCCTCCGT 57.505 37.500 0.00 0.00 0.00 4.69
2926 3186 6.494666 TCATTATGATTTACTCCCTCCGTT 57.505 37.500 0.00 0.00 0.00 4.44
2927 3187 6.522054 TCATTATGATTTACTCCCTCCGTTC 58.478 40.000 0.00 0.00 0.00 3.95
2928 3188 3.840124 ATGATTTACTCCCTCCGTTCC 57.160 47.619 0.00 0.00 0.00 3.62
2929 3189 2.542550 TGATTTACTCCCTCCGTTCCA 58.457 47.619 0.00 0.00 0.00 3.53
2930 3190 2.907696 TGATTTACTCCCTCCGTTCCAA 59.092 45.455 0.00 0.00 0.00 3.53
2931 3191 3.328343 TGATTTACTCCCTCCGTTCCAAA 59.672 43.478 0.00 0.00 0.00 3.28
2932 3192 3.860968 TTTACTCCCTCCGTTCCAAAA 57.139 42.857 0.00 0.00 0.00 2.44
2933 3193 4.376225 TTTACTCCCTCCGTTCCAAAAT 57.624 40.909 0.00 0.00 0.00 1.82
2934 3194 5.502089 TTTACTCCCTCCGTTCCAAAATA 57.498 39.130 0.00 0.00 0.00 1.40
2935 3195 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2936 3196 2.238898 ACTCCCTCCGTTCCAAAATAGG 59.761 50.000 0.00 0.00 0.00 2.57
2937 3197 2.238898 CTCCCTCCGTTCCAAAATAGGT 59.761 50.000 0.00 0.00 0.00 3.08
2938 3198 2.026636 TCCCTCCGTTCCAAAATAGGTG 60.027 50.000 0.00 0.00 0.00 4.00
2939 3199 2.290705 CCCTCCGTTCCAAAATAGGTGT 60.291 50.000 0.00 0.00 0.00 4.16
2940 3200 3.007635 CCTCCGTTCCAAAATAGGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2941 3201 3.307480 CCTCCGTTCCAAAATAGGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2942 3202 3.933332 CTCCGTTCCAAAATAGGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2943 3203 3.325425 TCCGTTCCAAAATAGGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2944 3204 4.069304 CCGTTCCAAAATAGGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2945 3205 4.083484 CCGTTCCAAAATAGGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2946 3206 4.755123 CGTTCCAAAATAGGTGTCTCAACT 59.245 41.667 0.00 0.00 34.83 3.16
2947 3207 5.238650 CGTTCCAAAATAGGTGTCTCAACTT 59.761 40.000 0.00 0.00 31.86 2.66
2948 3208 6.238648 CGTTCCAAAATAGGTGTCTCAACTTT 60.239 38.462 0.00 0.00 31.86 2.66
2949 3209 6.633500 TCCAAAATAGGTGTCTCAACTTTG 57.367 37.500 0.00 0.00 31.86 2.77
2950 3210 6.126409 TCCAAAATAGGTGTCTCAACTTTGT 58.874 36.000 0.00 0.00 31.86 2.83
2951 3211 7.284074 TCCAAAATAGGTGTCTCAACTTTGTA 58.716 34.615 0.00 0.00 31.86 2.41
2952 3212 7.227910 TCCAAAATAGGTGTCTCAACTTTGTAC 59.772 37.037 0.00 0.00 31.86 2.90
2953 3213 7.228706 CCAAAATAGGTGTCTCAACTTTGTACT 59.771 37.037 0.00 0.00 31.86 2.73
2954 3214 9.268268 CAAAATAGGTGTCTCAACTTTGTACTA 57.732 33.333 0.00 0.00 31.86 1.82
2955 3215 9.841295 AAAATAGGTGTCTCAACTTTGTACTAA 57.159 29.630 0.00 0.00 31.86 2.24
2956 3216 9.490379 AAATAGGTGTCTCAACTTTGTACTAAG 57.510 33.333 14.42 14.42 31.86 2.18
2957 3217 6.481434 AGGTGTCTCAACTTTGTACTAAGT 57.519 37.500 15.68 15.68 39.97 2.24
2958 3218 6.885922 AGGTGTCTCAACTTTGTACTAAGTT 58.114 36.000 23.96 23.96 46.42 2.66
2959 3219 7.336396 AGGTGTCTCAACTTTGTACTAAGTTT 58.664 34.615 26.14 13.30 43.85 2.66
2960 3220 8.480501 AGGTGTCTCAACTTTGTACTAAGTTTA 58.519 33.333 26.14 19.67 43.85 2.01
2961 3221 8.762426 GGTGTCTCAACTTTGTACTAAGTTTAG 58.238 37.037 26.14 25.76 43.85 1.85
2962 3222 9.310716 GTGTCTCAACTTTGTACTAAGTTTAGT 57.689 33.333 27.80 12.56 43.85 2.24
2999 3259 9.856162 ACTAAAGTTAAGACACTTATTTTGGGA 57.144 29.630 0.00 0.00 35.87 4.37
3001 3261 6.796705 AGTTAAGACACTTATTTTGGGACG 57.203 37.500 0.00 0.00 0.00 4.79
3002 3262 5.704053 AGTTAAGACACTTATTTTGGGACGG 59.296 40.000 0.00 0.00 0.00 4.79
3003 3263 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
3004 3264 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
3005 3265 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3006 3266 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3007 3267 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3008 3268 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3009 3269 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3018 3278 2.438392 GGACGGAGGGAGTATTTTCCAT 59.562 50.000 0.00 0.00 39.09 3.41
3023 3283 3.481453 GAGGGAGTATTTTCCATGCCTC 58.519 50.000 0.00 0.00 39.09 4.70
3121 3438 5.416083 TCACATTCGTTTCATAGGTAGGTG 58.584 41.667 0.00 0.00 0.00 4.00
3131 3448 6.796785 TTCATAGGTAGGTGTAGGGTTAAC 57.203 41.667 0.00 0.00 0.00 2.01
3132 3449 5.211201 TCATAGGTAGGTGTAGGGTTAACC 58.789 45.833 16.85 16.85 40.67 2.85
3165 3486 5.666462 TGCCTCCTTTTGTTTTCTAAAACC 58.334 37.500 14.08 0.06 45.82 3.27
3166 3487 5.423931 TGCCTCCTTTTGTTTTCTAAAACCT 59.576 36.000 14.08 0.00 45.82 3.50
3184 3505 9.313118 CTAAAACCTACAATTGAAATATTGGCC 57.687 33.333 13.59 0.00 39.33 5.36
3213 3534 4.950475 TGGGATCTCCTAGAATGTATAGCG 59.050 45.833 0.00 0.00 36.20 4.26
3235 3556 4.982916 CGTACCAGTATGCAAGGACTAATC 59.017 45.833 0.00 0.00 31.97 1.75
3261 3582 7.484140 TGTAGTCTTGTATGCTAGATTCTGTG 58.516 38.462 0.00 0.00 0.00 3.66
3270 3591 3.515502 TGCTAGATTCTGTGCTTACCTGT 59.484 43.478 12.47 0.00 0.00 4.00
3301 3622 3.199727 TGCTTAGGTGGATGTCAAGCATA 59.800 43.478 3.35 0.00 44.79 3.14
3336 3657 2.184533 TCCCTAAGGTCATTGCTCGAA 58.815 47.619 0.00 0.00 0.00 3.71
3339 3660 2.289002 CCTAAGGTCATTGCTCGAATGC 59.711 50.000 0.00 0.00 41.29 3.56
3366 3687 7.226918 GGTGAAGCTTCCAGGTATAATAACTTC 59.773 40.741 23.42 0.00 0.00 3.01
3404 3725 6.598064 CCCTTCATCTTATTAGTTGACCGTTT 59.402 38.462 0.00 0.00 31.49 3.60
3405 3726 7.767198 CCCTTCATCTTATTAGTTGACCGTTTA 59.233 37.037 0.00 0.00 31.49 2.01
3412 3733 8.928733 TCTTATTAGTTGACCGTTTACATGTTC 58.071 33.333 2.30 0.00 0.00 3.18
3457 3778 6.500684 AGTTATGACTTTGCATTCGTTGAT 57.499 33.333 0.00 0.00 29.87 2.57
3490 3811 9.667107 AAGAGAATGTACGAGGAATATTTTGAA 57.333 29.630 0.00 0.00 0.00 2.69
3526 3847 9.454859 AAGCTAGTAAGATTCTAAATGCAGTTT 57.545 29.630 4.05 2.06 0.00 2.66
3563 3884 8.437360 TTGCTTGTTCAGATATAATACCTGTG 57.563 34.615 0.00 0.00 0.00 3.66
3564 3885 7.564793 TGCTTGTTCAGATATAATACCTGTGT 58.435 34.615 0.00 0.00 0.00 3.72
3579 3900 4.973168 ACCTGTGTTCTTTCAGCTTATGA 58.027 39.130 0.00 0.00 35.62 2.15
3590 3911 6.261603 TCTTTCAGCTTATGATTGCCATAGTG 59.738 38.462 0.00 0.00 38.82 2.74
3598 3919 4.824479 TGATTGCCATAGTGTTCTCTCA 57.176 40.909 0.00 0.00 0.00 3.27
3666 3987 5.586243 AGCTACAATTTTCATACACAGCGAT 59.414 36.000 0.00 0.00 0.00 4.58
3803 4212 2.797792 GCTGATCCGCTAGTGAGTTCTG 60.798 54.545 4.44 4.16 0.00 3.02
3807 4216 3.746045 TCCGCTAGTGAGTTCTGTTTT 57.254 42.857 4.44 0.00 0.00 2.43
3822 4231 8.281212 AGTTCTGTTTTCTTTCTTTTGAGCTA 57.719 30.769 0.00 0.00 0.00 3.32
3987 4403 2.091939 AGCATGGTAGCTCTCTCTCTCA 60.092 50.000 0.00 0.00 42.18 3.27
3988 4404 2.892852 GCATGGTAGCTCTCTCTCTCAT 59.107 50.000 0.00 0.00 0.00 2.90
3989 4405 4.078537 GCATGGTAGCTCTCTCTCTCATA 58.921 47.826 0.00 0.00 0.00 2.15
3990 4406 4.706476 GCATGGTAGCTCTCTCTCTCATAT 59.294 45.833 0.00 0.00 0.00 1.78
3991 4407 5.393352 GCATGGTAGCTCTCTCTCTCATATG 60.393 48.000 0.00 0.00 0.00 1.78
3992 4408 5.317600 TGGTAGCTCTCTCTCTCATATGT 57.682 43.478 1.90 0.00 0.00 2.29
3993 4409 5.312895 TGGTAGCTCTCTCTCTCATATGTC 58.687 45.833 1.90 0.00 0.00 3.06
3994 4410 5.073008 TGGTAGCTCTCTCTCTCATATGTCT 59.927 44.000 1.90 0.00 0.00 3.41
3995 4411 5.412594 GGTAGCTCTCTCTCTCATATGTCTG 59.587 48.000 1.90 0.00 0.00 3.51
3996 4412 5.052693 AGCTCTCTCTCTCATATGTCTGT 57.947 43.478 1.90 0.00 0.00 3.41
3997 4413 5.065914 AGCTCTCTCTCTCATATGTCTGTC 58.934 45.833 1.90 0.00 0.00 3.51
4001 4417 6.003326 TCTCTCTCTCATATGTCTGTCCATC 58.997 44.000 1.90 0.00 0.00 3.51
4002 4418 5.951204 TCTCTCTCATATGTCTGTCCATCT 58.049 41.667 1.90 0.00 0.00 2.90
4003 4419 6.003326 TCTCTCTCATATGTCTGTCCATCTC 58.997 44.000 1.90 0.00 0.00 2.75
4004 4420 5.699143 TCTCTCATATGTCTGTCCATCTCA 58.301 41.667 1.90 0.00 0.00 3.27
4005 4421 6.313324 TCTCTCATATGTCTGTCCATCTCAT 58.687 40.000 1.90 0.00 0.00 2.90
4122 4587 5.232202 CACCAGCAATAATGTGTCGTAGTAG 59.768 44.000 0.00 0.00 0.00 2.57
4126 4591 4.317139 GCAATAATGTGTCGTAGTAGTGCG 60.317 45.833 1.11 1.11 31.70 5.34
4132 4608 2.095768 GTGTCGTAGTAGTGCGGTACAA 60.096 50.000 8.24 0.00 31.82 2.41
4185 4661 5.808042 ATTGTGACATGTTCATACTGCTC 57.192 39.130 0.00 0.00 36.32 4.26
4216 4692 8.432805 ACATATCTTGTGGACCTTAGGATTTAG 58.567 37.037 4.77 0.00 37.11 1.85
4218 4694 6.697641 TCTTGTGGACCTTAGGATTTAGTT 57.302 37.500 4.77 0.00 0.00 2.24
4219 4695 7.086685 TCTTGTGGACCTTAGGATTTAGTTT 57.913 36.000 4.77 0.00 0.00 2.66
4220 4696 8.209802 TCTTGTGGACCTTAGGATTTAGTTTA 57.790 34.615 4.77 0.00 0.00 2.01
4221 4697 8.098912 TCTTGTGGACCTTAGGATTTAGTTTAC 58.901 37.037 4.77 0.00 0.00 2.01
4222 4698 7.563724 TGTGGACCTTAGGATTTAGTTTACT 57.436 36.000 4.77 0.00 0.00 2.24
4223 4699 7.981142 TGTGGACCTTAGGATTTAGTTTACTT 58.019 34.615 4.77 0.00 0.00 2.24
4224 4700 8.442374 TGTGGACCTTAGGATTTAGTTTACTTT 58.558 33.333 4.77 0.00 0.00 2.66
4225 4701 8.727910 GTGGACCTTAGGATTTAGTTTACTTTG 58.272 37.037 4.77 0.00 0.00 2.77
4226 4702 8.442374 TGGACCTTAGGATTTAGTTTACTTTGT 58.558 33.333 4.77 0.00 0.00 2.83
4227 4703 8.727910 GGACCTTAGGATTTAGTTTACTTTGTG 58.272 37.037 4.77 0.00 0.00 3.33
4228 4704 8.631480 ACCTTAGGATTTAGTTTACTTTGTGG 57.369 34.615 4.77 0.00 0.00 4.17
4230 4706 8.727910 CCTTAGGATTTAGTTTACTTTGTGGAC 58.272 37.037 0.00 0.00 0.00 4.02
4232 4708 6.849151 AGGATTTAGTTTACTTTGTGGACCT 58.151 36.000 0.00 0.00 0.00 3.85
4235 4711 8.727910 GGATTTAGTTTACTTTGTGGACCTTAG 58.272 37.037 0.00 0.00 0.00 2.18
4236 4712 8.631480 ATTTAGTTTACTTTGTGGACCTTAGG 57.369 34.615 0.00 0.00 0.00 2.69
4238 4714 6.449830 AGTTTACTTTGTGGACCTTAGGAT 57.550 37.500 4.77 0.00 0.00 3.24
4239 4715 6.849151 AGTTTACTTTGTGGACCTTAGGATT 58.151 36.000 4.77 0.00 0.00 3.01
4247 4786 9.462606 CTTTGTGGACCTTAGGATTTAGTTTAT 57.537 33.333 4.77 0.00 0.00 1.40
4317 4856 9.936759 TTATTTGATATGCTGATACATTACCGA 57.063 29.630 0.00 0.00 0.00 4.69
4318 4857 8.846943 ATTTGATATGCTGATACATTACCGAA 57.153 30.769 0.00 0.00 0.00 4.30
4319 4858 8.669946 TTTGATATGCTGATACATTACCGAAA 57.330 30.769 0.00 0.00 0.00 3.46
4320 4859 8.669946 TTGATATGCTGATACATTACCGAAAA 57.330 30.769 0.00 0.00 0.00 2.29
4321 4860 8.669946 TGATATGCTGATACATTACCGAAAAA 57.330 30.769 0.00 0.00 0.00 1.94
4322 4861 8.773645 TGATATGCTGATACATTACCGAAAAAG 58.226 33.333 0.00 0.00 0.00 2.27
4323 4862 5.811399 TGCTGATACATTACCGAAAAAGG 57.189 39.130 0.00 0.00 37.30 3.11
4324 4863 4.095782 TGCTGATACATTACCGAAAAAGGC 59.904 41.667 0.00 0.00 33.69 4.35
4325 4864 4.335594 GCTGATACATTACCGAAAAAGGCT 59.664 41.667 0.00 0.00 33.69 4.58
4326 4865 5.163652 GCTGATACATTACCGAAAAAGGCTT 60.164 40.000 0.00 0.00 33.69 4.35
4327 4866 6.625081 GCTGATACATTACCGAAAAAGGCTTT 60.625 38.462 6.68 6.68 33.69 3.51
4328 4867 6.848451 TGATACATTACCGAAAAAGGCTTTC 58.152 36.000 13.76 0.41 33.69 2.62
4330 4869 2.691984 TTACCGAAAAAGGCTTTCGC 57.308 45.000 13.76 7.41 46.89 4.70
4340 4879 2.946762 GCTTTCGCCCCGATATGC 59.053 61.111 0.00 0.00 35.23 3.14
4341 4880 1.598130 GCTTTCGCCCCGATATGCT 60.598 57.895 0.00 0.00 35.23 3.79
4342 4881 1.166531 GCTTTCGCCCCGATATGCTT 61.167 55.000 0.00 0.00 35.23 3.91
4343 4882 1.876416 GCTTTCGCCCCGATATGCTTA 60.876 52.381 0.00 0.00 35.23 3.09
4344 4883 2.699954 CTTTCGCCCCGATATGCTTAT 58.300 47.619 0.00 0.00 35.23 1.73
4345 4884 3.857052 CTTTCGCCCCGATATGCTTATA 58.143 45.455 0.00 0.00 35.23 0.98
4346 4885 2.953466 TCGCCCCGATATGCTTATAC 57.047 50.000 0.00 0.00 0.00 1.47
4350 4889 3.938963 CGCCCCGATATGCTTATACATTT 59.061 43.478 0.00 0.00 0.00 2.32
4353 4892 5.253330 CCCCGATATGCTTATACATTTGGT 58.747 41.667 0.00 0.00 0.00 3.67
4372 4911 3.285484 GGTGCATCATCCTTCTCATGTT 58.715 45.455 0.00 0.00 0.00 2.71
4376 4915 6.261118 GTGCATCATCCTTCTCATGTTTTAC 58.739 40.000 0.00 0.00 0.00 2.01
4407 4946 8.842358 ACTTGATCTTAATTAACAAAGGACGA 57.158 30.769 0.00 0.00 0.00 4.20
4409 4948 8.842358 TTGATCTTAATTAACAAAGGACGAGT 57.158 30.769 0.00 0.00 0.00 4.18
4411 4950 9.932207 TGATCTTAATTAACAAAGGACGAGTAA 57.068 29.630 0.00 0.00 0.00 2.24
4481 5021 4.761235 AGATGACTGACTTTGCAACATG 57.239 40.909 0.00 0.00 0.00 3.21
4482 5022 4.392047 AGATGACTGACTTTGCAACATGA 58.608 39.130 0.00 0.00 0.00 3.07
4505 5045 8.250143 TGATGTGTACTCCATAGATGTTGTAT 57.750 34.615 0.00 0.00 0.00 2.29
4516 5056 7.347222 TCCATAGATGTTGTATACTTCCCTTGT 59.653 37.037 4.17 0.00 32.71 3.16
4618 5158 3.411446 TGACAGCTTTGGATGTAGTTGG 58.589 45.455 0.00 0.00 42.53 3.77
4621 5161 2.749621 CAGCTTTGGATGTAGTTGGACC 59.250 50.000 0.00 0.00 0.00 4.46
4632 5172 2.528041 AGTTGGACCGTCTTCAAGAC 57.472 50.000 7.56 7.56 41.71 3.01
4645 5185 6.030849 CGTCTTCAAGACTACTAATCACCAG 58.969 44.000 15.66 0.00 42.92 4.00
4705 5246 6.994496 TCTATAGCCACATCAGGAATGAAAAG 59.006 38.462 0.00 0.00 38.83 2.27
4706 5247 2.494870 AGCCACATCAGGAATGAAAAGC 59.505 45.455 0.00 0.00 38.83 3.51
4707 5248 2.231964 GCCACATCAGGAATGAAAAGCA 59.768 45.455 0.00 0.00 38.83 3.91
4708 5249 3.841643 CCACATCAGGAATGAAAAGCAC 58.158 45.455 0.00 0.00 38.83 4.40
4709 5250 3.256383 CCACATCAGGAATGAAAAGCACA 59.744 43.478 0.00 0.00 38.83 4.57
4710 5251 4.081862 CCACATCAGGAATGAAAAGCACAT 60.082 41.667 0.00 0.00 38.83 3.21
4712 5253 5.014858 ACATCAGGAATGAAAAGCACATCT 58.985 37.500 0.00 0.00 38.83 2.90
4713 5254 5.105877 ACATCAGGAATGAAAAGCACATCTG 60.106 40.000 0.00 0.00 38.83 2.90
4714 5255 4.401022 TCAGGAATGAAAAGCACATCTGT 58.599 39.130 0.00 0.00 0.00 3.41
4715 5256 7.115071 CATCAGGAATGAAAAGCACATCTGTG 61.115 42.308 5.95 5.95 42.23 3.66
4724 5266 2.435586 ACATCTGTGCGCCTGAGC 60.436 61.111 4.18 0.00 37.71 4.26
4744 5286 0.390866 CAATGGAGTCGCTCAGCAGT 60.391 55.000 0.00 0.00 31.08 4.40
4760 5302 6.535150 GCTCAGCAGTTACTAATACAATCACA 59.465 38.462 0.00 0.00 0.00 3.58
4763 5305 8.040727 TCAGCAGTTACTAATACAATCACACAT 58.959 33.333 0.00 0.00 0.00 3.21
4765 5307 7.222805 AGCAGTTACTAATACAATCACACATCG 59.777 37.037 0.00 0.00 0.00 3.84
4766 5308 7.222031 GCAGTTACTAATACAATCACACATCGA 59.778 37.037 0.00 0.00 0.00 3.59
4767 5309 8.532341 CAGTTACTAATACAATCACACATCGAC 58.468 37.037 0.00 0.00 0.00 4.20
4768 5310 8.248253 AGTTACTAATACAATCACACATCGACA 58.752 33.333 0.00 0.00 0.00 4.35
4769 5311 9.031360 GTTACTAATACAATCACACATCGACAT 57.969 33.333 0.00 0.00 0.00 3.06
4783 5329 5.754890 CACATCGACATATCATGGTCTTGAA 59.245 40.000 0.00 0.00 33.60 2.69
4820 5368 5.636543 TCATATCTCTGTTCGCATTATGCAG 59.363 40.000 17.75 9.94 45.36 4.41
4840 5388 4.805719 GCAGTTTCTTTTGTTTCTTCTGGG 59.194 41.667 0.00 0.00 0.00 4.45
4849 5397 0.112412 TTTCTTCTGGGGGAGGCAAC 59.888 55.000 0.00 0.00 0.00 4.17
4865 5413 0.171903 CAACTAACAGCATGCCTGGC 59.828 55.000 15.66 12.87 46.14 4.85
4892 5487 1.594862 CGATTGCGACAAGATCTTCCC 59.405 52.381 4.57 0.00 40.82 3.97
4893 5488 2.632377 GATTGCGACAAGATCTTCCCA 58.368 47.619 4.57 0.00 0.00 4.37
4916 5511 0.695924 TGGGTGGATCAATTGGTCGT 59.304 50.000 12.50 0.00 0.00 4.34
4932 5527 3.958147 TGGTCGTCCATGTATGATGTACT 59.042 43.478 0.00 0.00 39.03 2.73
4945 5540 8.888332 TGTATGATGTACTAAAATTTTGCGTG 57.112 30.769 13.76 4.05 0.00 5.34
4946 5541 8.508062 TGTATGATGTACTAAAATTTTGCGTGT 58.492 29.630 13.76 9.15 0.00 4.49
4950 5545 8.747666 TGATGTACTAAAATTTTGCGTGTTTTC 58.252 29.630 13.76 7.56 0.00 2.29
4951 5546 7.452630 TGTACTAAAATTTTGCGTGTTTTCC 57.547 32.000 13.76 0.00 0.00 3.13
4954 5549 5.751509 ACTAAAATTTTGCGTGTTTTCCCTC 59.248 36.000 13.76 0.00 0.00 4.30
4957 5552 2.642154 TTTGCGTGTTTTCCCTCCTA 57.358 45.000 0.00 0.00 0.00 2.94
4970 5567 4.074799 TCCCTCCTAAGGAAAGTGATGA 57.925 45.455 0.00 0.00 46.67 2.92
4975 5572 3.055094 TCCTAAGGAAAGTGATGAGCCAC 60.055 47.826 0.00 0.00 37.32 5.01
4982 5579 3.308438 AAGTGATGAGCCACAAAATGC 57.692 42.857 0.00 0.00 39.42 3.56
4986 5583 1.406539 GATGAGCCACAAAATGCCGAT 59.593 47.619 0.00 0.00 0.00 4.18
4988 5585 0.527565 GAGCCACAAAATGCCGATGT 59.472 50.000 0.00 0.00 0.00 3.06
4991 5588 1.712401 CCACAAAATGCCGATGTTGG 58.288 50.000 0.00 0.00 31.69 3.77
4996 5596 3.559242 ACAAAATGCCGATGTTGGTTTTG 59.441 39.130 11.00 11.00 39.25 2.44
4998 5598 0.607620 ATGCCGATGTTGGTTTTGGG 59.392 50.000 0.00 0.00 0.00 4.12
5003 5603 3.093057 CCGATGTTGGTTTTGGGGAATA 58.907 45.455 0.00 0.00 0.00 1.75
5020 5620 7.287061 TGGGGAATATGTTAATCACTAACCAG 58.713 38.462 0.00 0.00 39.43 4.00
5042 5642 2.037902 TCAGCTGGTAACCGATGTTCAA 59.962 45.455 15.13 0.00 35.87 2.69
5063 5663 9.274206 GTTCAATTGAGTAACTTAAGTTCCTCT 57.726 33.333 29.86 22.76 40.36 3.69
5107 5721 0.758685 TTGTTTTGGGGTGGCCTGAG 60.759 55.000 3.32 0.00 0.00 3.35
5120 5734 1.609320 GGCCTGAGGAACACTGAAGTC 60.609 57.143 0.65 0.00 0.00 3.01
5209 5988 3.737305 GCTTGTAGACTTAAAAGCGCAG 58.263 45.455 11.47 0.00 39.62 5.18
5308 6088 4.446719 GGTAGTAGAGTTTCAACCAACACG 59.553 45.833 0.00 0.00 0.00 4.49
5467 6249 7.014711 ACGATCTATGATAACCACTCTTGTCAT 59.985 37.037 0.00 0.00 36.36 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 110 0.103208 CGAGTAGCTCGCCATCCTTT 59.897 55.000 5.60 0.00 46.75 3.11
158 166 4.451900 CCTACAAAATCCGCAGATAAGGT 58.548 43.478 0.00 0.00 30.42 3.50
161 169 3.879998 TGCCTACAAAATCCGCAGATAA 58.120 40.909 0.00 0.00 30.42 1.75
192 212 1.985159 ACTTGATGCCAGAAGGTACCA 59.015 47.619 15.94 0.00 37.19 3.25
392 413 5.864628 AGAGAAAGCAAAACTTACGATCC 57.135 39.130 0.00 0.00 37.75 3.36
449 471 4.127171 GGGCTACATAATGTGTACACCAG 58.873 47.826 22.91 10.44 42.29 4.00
635 664 8.858094 TCATCCATACATAGCATGCAAATTAAA 58.142 29.630 21.98 0.00 0.00 1.52
707 737 8.786826 TTGAACTAATCGGACAGAATTTATGT 57.213 30.769 0.00 0.00 0.00 2.29
773 803 2.036217 ACCACGAACACAGATACGGAAA 59.964 45.455 0.00 0.00 0.00 3.13
788 818 0.323178 GGACTGGGACTAGACCACGA 60.323 60.000 13.36 0.00 33.53 4.35
829 867 4.194720 GCATCTCCGACGCCGACT 62.195 66.667 0.00 0.00 38.22 4.18
834 872 0.601558 TATAAGGGCATCTCCGACGC 59.398 55.000 0.00 0.00 34.94 5.19
854 892 9.297586 GTTTAATCACAGTGAGATATGTACGAA 57.702 33.333 9.64 0.00 0.00 3.85
856 894 7.096599 CGGTTTAATCACAGTGAGATATGTACG 60.097 40.741 9.64 3.57 0.00 3.67
894 932 7.396419 CCAGTTTACGTTTTAATCGATCGAAT 58.604 34.615 23.50 17.01 0.00 3.34
905 943 3.071312 TGAGCCTCCCAGTTTACGTTTTA 59.929 43.478 0.00 0.00 0.00 1.52
932 970 6.462073 TTCAAAATCGGACTTAAGAACGAG 57.538 37.500 22.88 13.96 38.85 4.18
941 979 4.039124 AGCATGGTTTTCAAAATCGGACTT 59.961 37.500 0.00 0.00 0.00 3.01
942 980 3.573967 AGCATGGTTTTCAAAATCGGACT 59.426 39.130 0.00 0.00 0.00 3.85
1158 1203 3.688086 GGAGAGCAGTGTCCGAGT 58.312 61.111 0.00 0.00 0.00 4.18
1238 1289 4.063967 CTACCGCCAGTGCCGTCA 62.064 66.667 0.00 0.00 31.32 4.35
1350 1401 2.285144 GACGGAAAGGGGGAGGGA 60.285 66.667 0.00 0.00 0.00 4.20
1367 1419 1.213537 CAGCAGCGAATTTGTGGGG 59.786 57.895 0.00 0.00 0.00 4.96
1441 1493 1.068741 GATCCCGAAGCACCTAACGAT 59.931 52.381 0.00 0.00 0.00 3.73
1540 1592 1.272715 CAACGTAAGCGGCTATGCG 59.727 57.895 1.35 11.50 43.45 4.73
1542 1594 0.937304 ATGCAACGTAAGCGGCTATG 59.063 50.000 1.35 0.00 43.45 2.23
1543 1595 1.330521 CAATGCAACGTAAGCGGCTAT 59.669 47.619 1.35 0.00 43.45 2.97
1544 1596 0.724549 CAATGCAACGTAAGCGGCTA 59.275 50.000 1.35 0.00 43.45 3.93
1545 1597 0.953471 TCAATGCAACGTAAGCGGCT 60.953 50.000 0.00 0.00 43.45 5.52
1547 1599 0.796312 ACTCAATGCAACGTAAGCGG 59.204 50.000 8.18 1.72 43.45 5.52
1548 1600 2.096466 TCAACTCAATGCAACGTAAGCG 60.096 45.455 8.18 0.00 45.62 4.68
1549 1601 3.186409 TCTCAACTCAATGCAACGTAAGC 59.814 43.478 6.00 6.00 45.62 3.09
1550 1602 8.931501 GCACTCTCAACTCAATGCAACGTAAG 62.932 46.154 0.00 0.00 36.80 2.34
1552 1604 3.740832 CACTCTCAACTCAATGCAACGTA 59.259 43.478 0.00 0.00 0.00 3.57
1554 1606 2.663879 GCACTCTCAACTCAATGCAACG 60.664 50.000 0.00 0.00 33.27 4.10
1555 1607 2.663879 CGCACTCTCAACTCAATGCAAC 60.664 50.000 0.00 0.00 33.27 4.17
1556 1608 1.532437 CGCACTCTCAACTCAATGCAA 59.468 47.619 0.00 0.00 33.27 4.08
1557 1609 1.150827 CGCACTCTCAACTCAATGCA 58.849 50.000 0.00 0.00 33.27 3.96
1558 1610 1.136141 CACGCACTCTCAACTCAATGC 60.136 52.381 0.00 0.00 0.00 3.56
1584 1644 7.231722 AGGTAGTCTTAGAATTAGATGCGTCAT 59.768 37.037 8.99 0.00 0.00 3.06
1595 1655 5.500234 TGCAATGCAGGTAGTCTTAGAATT 58.500 37.500 2.72 0.00 33.32 2.17
1656 1716 1.336440 CGCATGAGTAGAGGACAGAGG 59.664 57.143 0.00 0.00 0.00 3.69
1659 1719 2.949451 AACGCATGAGTAGAGGACAG 57.051 50.000 1.37 0.00 0.00 3.51
1661 1721 4.096682 AGTCTTAACGCATGAGTAGAGGAC 59.903 45.833 14.47 14.47 0.00 3.85
1699 1759 4.341235 CACTGGATCTATAGTCAACCGGAA 59.659 45.833 9.46 0.00 0.00 4.30
1707 1767 4.881019 ATGCCACACTGGATCTATAGTC 57.119 45.455 0.00 0.00 40.96 2.59
1710 1770 5.104151 TGGAAAATGCCACACTGGATCTATA 60.104 40.000 0.00 0.00 40.96 1.31
1715 1775 2.307496 TGGAAAATGCCACACTGGAT 57.693 45.000 0.00 0.00 40.96 3.41
1738 1798 8.106247 AGGCATTTCTGAAGTTACGAAAATAA 57.894 30.769 0.00 0.00 31.30 1.40
1755 1815 4.884164 AGCAAGACCATAGTAAGGCATTTC 59.116 41.667 0.00 0.00 0.00 2.17
1758 1818 5.832539 ATAGCAAGACCATAGTAAGGCAT 57.167 39.130 0.00 0.00 0.00 4.40
1759 1819 5.630415 AATAGCAAGACCATAGTAAGGCA 57.370 39.130 0.00 0.00 0.00 4.75
1799 1859 0.748005 AGCATGCCCCGAATACACAC 60.748 55.000 15.66 0.00 0.00 3.82
1809 1869 2.360767 TGCATTCCAAGCATGCCCC 61.361 57.895 15.66 0.00 45.59 5.80
1922 2169 5.320277 AGAAACCTAGCAAGAGAAAGCAAT 58.680 37.500 0.00 0.00 0.00 3.56
1936 2183 0.108138 CCTGTGCGGGAGAAACCTAG 60.108 60.000 0.00 0.00 38.98 3.02
1948 2195 2.047465 AGAAGCTGAGCCTGTGCG 60.047 61.111 0.00 0.00 44.33 5.34
1990 2237 3.610040 ACTTCAATACATCGGTCTGCA 57.390 42.857 0.00 0.00 0.00 4.41
1996 2243 2.006888 ACGCCAACTTCAATACATCGG 58.993 47.619 0.00 0.00 0.00 4.18
2062 2309 0.541998 GGGGGTGGAAAACTGGAAGG 60.542 60.000 0.00 0.00 39.30 3.46
2069 2316 0.759060 ACTTGCTGGGGGTGGAAAAC 60.759 55.000 0.00 0.00 0.00 2.43
2071 2318 0.854218 TTACTTGCTGGGGGTGGAAA 59.146 50.000 0.00 0.00 0.00 3.13
2073 2320 0.111639 GTTTACTTGCTGGGGGTGGA 59.888 55.000 0.00 0.00 0.00 4.02
2074 2321 0.178975 TGTTTACTTGCTGGGGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
2075 2322 0.958822 GTGTTTACTTGCTGGGGGTG 59.041 55.000 0.00 0.00 0.00 4.61
2076 2323 0.850784 AGTGTTTACTTGCTGGGGGT 59.149 50.000 0.00 0.00 31.66 4.95
2077 2324 1.995376 AAGTGTTTACTTGCTGGGGG 58.005 50.000 0.00 0.00 45.17 5.40
2078 2325 4.331968 TGATAAGTGTTTACTTGCTGGGG 58.668 43.478 3.11 0.00 46.28 4.96
2079 2326 5.003804 ACTGATAAGTGTTTACTTGCTGGG 58.996 41.667 3.11 0.00 46.28 4.45
2080 2327 6.874134 AGTACTGATAAGTGTTTACTTGCTGG 59.126 38.462 0.00 0.00 46.28 4.85
2093 2340 9.702494 GGTTACAACTTACAAGTACTGATAAGT 57.298 33.333 19.39 19.39 38.57 2.24
2101 2348 7.790823 TCCTTTGGTTACAACTTACAAGTAC 57.209 36.000 0.00 0.00 38.57 2.73
2108 2355 5.381757 ACAGCATCCTTTGGTTACAACTTA 58.618 37.500 0.00 0.00 36.06 2.24
2109 2356 4.215109 ACAGCATCCTTTGGTTACAACTT 58.785 39.130 0.00 0.00 36.06 2.66
2110 2357 3.832527 ACAGCATCCTTTGGTTACAACT 58.167 40.909 0.00 0.00 36.06 3.16
2111 2358 5.897377 ATACAGCATCCTTTGGTTACAAC 57.103 39.130 0.00 0.00 36.06 3.32
2112 2359 6.007076 TCAATACAGCATCCTTTGGTTACAA 58.993 36.000 0.00 0.00 32.51 2.41
2113 2360 5.414454 GTCAATACAGCATCCTTTGGTTACA 59.586 40.000 0.00 0.00 32.51 2.41
2114 2361 5.447279 CGTCAATACAGCATCCTTTGGTTAC 60.447 44.000 0.00 0.00 32.51 2.50
2120 2367 8.585881 AGTATATACGTCAATACAGCATCCTTT 58.414 33.333 17.63 0.00 32.14 3.11
2156 2403 8.893727 GGATAACACATCAGCAATTACTAGTTT 58.106 33.333 0.00 0.00 0.00 2.66
2157 2404 8.267894 AGGATAACACATCAGCAATTACTAGTT 58.732 33.333 0.00 0.00 0.00 2.24
2158 2405 7.796054 AGGATAACACATCAGCAATTACTAGT 58.204 34.615 0.00 0.00 0.00 2.57
2159 2406 9.416794 CTAGGATAACACATCAGCAATTACTAG 57.583 37.037 0.00 0.00 0.00 2.57
2160 2407 7.872993 GCTAGGATAACACATCAGCAATTACTA 59.127 37.037 0.00 0.00 0.00 1.82
2161 2408 6.708054 GCTAGGATAACACATCAGCAATTACT 59.292 38.462 0.00 0.00 0.00 2.24
2162 2409 6.483307 TGCTAGGATAACACATCAGCAATTAC 59.517 38.462 0.00 0.00 34.82 1.89
2175 2422 5.677319 AGTTTGCTAGTGCTAGGATAACA 57.323 39.130 17.90 4.91 40.48 2.41
2188 2435 6.241385 GCACATTCTACGTTTAGTTTGCTAG 58.759 40.000 0.00 0.00 0.00 3.42
2189 2436 5.164031 CGCACATTCTACGTTTAGTTTGCTA 60.164 40.000 0.00 0.00 0.00 3.49
2190 2437 4.377022 CGCACATTCTACGTTTAGTTTGCT 60.377 41.667 0.00 0.00 0.00 3.91
2191 2438 3.838550 CGCACATTCTACGTTTAGTTTGC 59.161 43.478 0.00 0.00 0.00 3.68
2192 2439 5.258685 TCGCACATTCTACGTTTAGTTTG 57.741 39.130 0.00 0.00 0.00 2.93
2193 2440 5.234757 TGTTCGCACATTCTACGTTTAGTTT 59.765 36.000 0.00 0.00 0.00 2.66
2197 2444 5.849357 ATTGTTCGCACATTCTACGTTTA 57.151 34.783 0.00 0.00 31.06 2.01
2207 2454 4.142902 GCACACTAGTTATTGTTCGCACAT 60.143 41.667 0.00 0.00 31.06 3.21
2210 2457 3.394719 TGCACACTAGTTATTGTTCGCA 58.605 40.909 0.00 0.00 0.00 5.10
2212 2459 5.348724 ACTCATGCACACTAGTTATTGTTCG 59.651 40.000 0.00 0.00 0.00 3.95
2233 2480 1.936547 GGATGATTTGCTGACCGACTC 59.063 52.381 0.00 0.00 0.00 3.36
2238 2485 1.753073 CCCAAGGATGATTTGCTGACC 59.247 52.381 0.00 0.00 0.00 4.02
2239 2486 2.450476 ACCCAAGGATGATTTGCTGAC 58.550 47.619 0.00 0.00 0.00 3.51
2244 2491 6.595682 AGATACAGTACCCAAGGATGATTTG 58.404 40.000 0.00 0.00 0.00 2.32
2253 2500 6.092807 GCTTTTCAGAAGATACAGTACCCAAG 59.907 42.308 0.00 0.00 0.00 3.61
2259 2506 7.986889 TGCATATGCTTTTCAGAAGATACAGTA 59.013 33.333 27.13 0.00 42.66 2.74
2267 2514 8.589629 GTTTATTGTGCATATGCTTTTCAGAAG 58.410 33.333 27.13 0.00 42.66 2.85
2270 2517 7.037438 AGGTTTATTGTGCATATGCTTTTCAG 58.963 34.615 27.13 0.00 42.66 3.02
2271 2518 6.934056 AGGTTTATTGTGCATATGCTTTTCA 58.066 32.000 27.13 17.29 42.66 2.69
2272 2519 7.253750 CGAAGGTTTATTGTGCATATGCTTTTC 60.254 37.037 27.13 15.20 42.66 2.29
2308 2555 8.482943 TGTAAGATAGGCTTTTAGTATCAGCAA 58.517 33.333 0.00 0.00 38.05 3.91
2309 2556 8.018537 TGTAAGATAGGCTTTTAGTATCAGCA 57.981 34.615 0.00 0.00 38.05 4.41
2310 2557 9.145865 GATGTAAGATAGGCTTTTAGTATCAGC 57.854 37.037 0.00 0.00 38.05 4.26
2311 2558 9.646427 GGATGTAAGATAGGCTTTTAGTATCAG 57.354 37.037 0.00 0.00 38.05 2.90
2314 2561 8.817876 GGAGGATGTAAGATAGGCTTTTAGTAT 58.182 37.037 0.00 0.00 38.05 2.12
2319 2576 4.978388 AGGGAGGATGTAAGATAGGCTTTT 59.022 41.667 0.00 0.00 38.05 2.27
2329 2587 2.503356 ACTGCTCAAGGGAGGATGTAAG 59.497 50.000 0.00 0.00 40.97 2.34
2346 2604 5.637006 TGGGTATGTTGTCAAAATACTGC 57.363 39.130 20.50 8.90 0.00 4.40
2361 2619 3.385433 ACAATGCACAATCCATGGGTATG 59.615 43.478 13.02 8.40 36.68 2.39
2409 2668 9.911788 ACAAGGTCTGAAATGATTATCAGTAAT 57.088 29.630 0.29 0.00 42.86 1.89
2453 2712 5.844004 ACGATCTTGTTACTTCTGTTCTGT 58.156 37.500 0.00 0.00 0.00 3.41
2454 2713 6.346919 CCAACGATCTTGTTACTTCTGTTCTG 60.347 42.308 0.00 0.00 0.00 3.02
2455 2714 5.696724 CCAACGATCTTGTTACTTCTGTTCT 59.303 40.000 0.00 0.00 0.00 3.01
2456 2715 5.694910 TCCAACGATCTTGTTACTTCTGTTC 59.305 40.000 0.00 0.00 0.00 3.18
2457 2716 5.607477 TCCAACGATCTTGTTACTTCTGTT 58.393 37.500 0.00 0.00 0.00 3.16
2474 2733 0.877071 AGCTCAGTGCATTTCCAACG 59.123 50.000 0.00 0.00 45.94 4.10
2516 2775 3.627395 AGTGACGAATATCCCTGCAAA 57.373 42.857 0.00 0.00 0.00 3.68
2599 2858 6.463995 AGTATCTCTTGGCAACTTCTAGAG 57.536 41.667 0.00 0.00 34.94 2.43
2716 2975 7.383687 TGGACCATGAAGTAAACTACAAGTAG 58.616 38.462 5.72 5.72 39.04 2.57
2719 2978 7.011482 GCTATGGACCATGAAGTAAACTACAAG 59.989 40.741 17.73 2.19 0.00 3.16
2727 2986 5.372343 ACATGCTATGGACCATGAAGTAA 57.628 39.130 17.73 1.30 40.92 2.24
2733 2992 7.041635 TGAAAATTACATGCTATGGACCATG 57.958 36.000 17.73 8.23 43.34 3.66
2752 3011 9.809096 TGAAAGTTACATGCAATTAACTGAAAA 57.191 25.926 18.96 7.45 38.32 2.29
2753 3012 9.462174 CTGAAAGTTACATGCAATTAACTGAAA 57.538 29.630 18.96 9.91 38.32 2.69
2773 3032 7.687941 AATATGTTGTCCAACCTACTGAAAG 57.312 36.000 7.64 0.00 40.46 2.62
2845 3105 2.040278 TGTTGTCCTCCCCATTTCTGAG 59.960 50.000 0.00 0.00 0.00 3.35
2852 3112 1.503347 AGGTTTTGTTGTCCTCCCCAT 59.497 47.619 0.00 0.00 0.00 4.00
2855 3115 2.945456 AGAAGGTTTTGTTGTCCTCCC 58.055 47.619 0.00 0.00 0.00 4.30
2887 3147 9.804977 AATCATAATGAATAAAGGAGGGAGAAG 57.195 33.333 0.00 0.00 0.00 2.85
2910 3170 3.622166 TTGGAACGGAGGGAGTAAATC 57.378 47.619 0.00 0.00 0.00 2.17
2915 3175 2.238898 CCTATTTTGGAACGGAGGGAGT 59.761 50.000 0.00 0.00 0.00 3.85
2916 3176 2.238898 ACCTATTTTGGAACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2917 3177 2.026636 CACCTATTTTGGAACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2918 3178 2.290705 ACACCTATTTTGGAACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2919 3179 3.007635 GACACCTATTTTGGAACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2920 3180 3.933332 GAGACACCTATTTTGGAACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2921 3181 3.325425 TGAGACACCTATTTTGGAACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2922 3182 3.670625 TGAGACACCTATTTTGGAACGG 58.329 45.455 0.00 0.00 0.00 4.44
2923 3183 4.755123 AGTTGAGACACCTATTTTGGAACG 59.245 41.667 0.00 0.00 0.00 3.95
2924 3184 6.635030 AAGTTGAGACACCTATTTTGGAAC 57.365 37.500 0.00 0.00 0.00 3.62
2925 3185 6.605594 ACAAAGTTGAGACACCTATTTTGGAA 59.394 34.615 0.00 0.00 0.00 3.53
2926 3186 6.126409 ACAAAGTTGAGACACCTATTTTGGA 58.874 36.000 0.00 0.00 0.00 3.53
2927 3187 6.391227 ACAAAGTTGAGACACCTATTTTGG 57.609 37.500 0.00 0.00 0.00 3.28
2928 3188 8.154649 AGTACAAAGTTGAGACACCTATTTTG 57.845 34.615 0.00 0.00 0.00 2.44
2929 3189 9.841295 TTAGTACAAAGTTGAGACACCTATTTT 57.159 29.630 0.00 0.00 0.00 1.82
2930 3190 9.490379 CTTAGTACAAAGTTGAGACACCTATTT 57.510 33.333 0.00 0.00 0.00 1.40
2931 3191 8.648693 ACTTAGTACAAAGTTGAGACACCTATT 58.351 33.333 0.00 0.00 36.26 1.73
2932 3192 8.191534 ACTTAGTACAAAGTTGAGACACCTAT 57.808 34.615 0.00 0.00 36.26 2.57
2933 3193 7.592885 ACTTAGTACAAAGTTGAGACACCTA 57.407 36.000 0.00 0.00 36.26 3.08
2934 3194 6.481434 ACTTAGTACAAAGTTGAGACACCT 57.519 37.500 0.00 0.00 36.26 4.00
2935 3195 7.549615 AAACTTAGTACAAAGTTGAGACACC 57.450 36.000 2.97 0.00 46.40 4.16
2936 3196 9.310716 ACTAAACTTAGTACAAAGTTGAGACAC 57.689 33.333 17.00 0.00 45.36 3.67
2973 3233 9.856162 TCCCAAAATAAGTGTCTTAACTTTAGT 57.144 29.630 0.00 0.00 40.77 2.24
2975 3235 8.776470 CGTCCCAAAATAAGTGTCTTAACTTTA 58.224 33.333 0.00 0.00 40.77 1.85
2976 3236 7.255346 CCGTCCCAAAATAAGTGTCTTAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
2977 3237 6.206048 CCGTCCCAAAATAAGTGTCTTAACTT 59.794 38.462 0.00 0.00 42.89 2.66
2978 3238 5.704053 CCGTCCCAAAATAAGTGTCTTAACT 59.296 40.000 0.00 0.00 0.00 2.24
2979 3239 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
2980 3240 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
2981 3241 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
2982 3242 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2983 3243 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2984 3244 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2985 3245 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2986 3246 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2987 3247 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2988 3248 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2989 3249 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2990 3250 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2991 3251 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2992 3252 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2993 3253 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2994 3254 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
2995 3255 1.835531 GAAAATACTCCCTCCGTCCCA 59.164 52.381 0.00 0.00 0.00 4.37
2996 3256 1.140452 GGAAAATACTCCCTCCGTCCC 59.860 57.143 0.00 0.00 0.00 4.46
2997 3257 1.835531 TGGAAAATACTCCCTCCGTCC 59.164 52.381 0.00 0.00 34.22 4.79
2998 3258 3.467803 CATGGAAAATACTCCCTCCGTC 58.532 50.000 0.00 0.00 34.22 4.79
2999 3259 2.421529 GCATGGAAAATACTCCCTCCGT 60.422 50.000 0.00 0.00 34.22 4.69
3000 3260 2.222027 GCATGGAAAATACTCCCTCCG 58.778 52.381 0.00 0.00 34.22 4.63
3001 3261 2.175715 AGGCATGGAAAATACTCCCTCC 59.824 50.000 0.00 0.00 34.22 4.30
3002 3262 3.137360 AGAGGCATGGAAAATACTCCCTC 59.863 47.826 0.00 0.00 34.22 4.30
3003 3263 3.117738 CAGAGGCATGGAAAATACTCCCT 60.118 47.826 0.00 0.00 34.22 4.20
3004 3264 3.217626 CAGAGGCATGGAAAATACTCCC 58.782 50.000 0.00 0.00 34.22 4.30
3005 3265 3.891049 ACAGAGGCATGGAAAATACTCC 58.109 45.455 0.00 0.00 35.88 3.85
3006 3266 7.573968 AATAACAGAGGCATGGAAAATACTC 57.426 36.000 0.00 0.00 0.00 2.59
3007 3267 8.494433 TCTAATAACAGAGGCATGGAAAATACT 58.506 33.333 0.00 0.00 0.00 2.12
3008 3268 8.677148 TCTAATAACAGAGGCATGGAAAATAC 57.323 34.615 0.00 0.00 0.00 1.89
3009 3269 9.866655 AATCTAATAACAGAGGCATGGAAAATA 57.133 29.630 0.00 0.00 0.00 1.40
3093 3410 7.435488 CCTACCTATGAAACGAATGTGAAGTAG 59.565 40.741 0.00 0.00 0.00 2.57
3097 3414 5.872617 CACCTACCTATGAAACGAATGTGAA 59.127 40.000 0.00 0.00 0.00 3.18
3105 3422 3.703052 ACCCTACACCTACCTATGAAACG 59.297 47.826 0.00 0.00 0.00 3.60
3121 3438 8.473358 AGGCAATTATTATTGGTTAACCCTAC 57.527 34.615 21.97 0.00 41.21 3.18
3131 3448 8.791327 AAACAAAAGGAGGCAATTATTATTGG 57.209 30.769 6.57 0.00 41.21 3.16
3165 3486 8.667463 CAAAAAGGGCCAATATTTCAATTGTAG 58.333 33.333 6.18 0.00 35.48 2.74
3166 3487 7.609532 CCAAAAAGGGCCAATATTTCAATTGTA 59.390 33.333 6.18 0.00 35.48 2.41
3184 3505 5.760131 ACATTCTAGGAGATCCCAAAAAGG 58.240 41.667 0.00 0.00 37.41 3.11
3197 3518 5.628130 ACTGGTACGCTATACATTCTAGGA 58.372 41.667 0.00 0.00 0.00 2.94
3204 3525 5.462530 TTGCATACTGGTACGCTATACAT 57.537 39.130 0.81 0.00 0.00 2.29
3213 3534 5.986135 CAGATTAGTCCTTGCATACTGGTAC 59.014 44.000 7.04 0.00 0.00 3.34
3235 3556 7.647318 CACAGAATCTAGCATACAAGACTACAG 59.353 40.741 0.00 0.00 0.00 2.74
3261 3582 7.094334 ACCTAAGCAATTTTTAGACAGGTAAGC 60.094 37.037 7.68 0.00 31.26 3.09
3270 3591 6.945435 TGACATCCACCTAAGCAATTTTTAGA 59.055 34.615 7.68 0.00 31.26 2.10
3301 3622 5.965091 ACCTTAGGGAATCTACAGCTAAAGT 59.035 40.000 2.32 0.00 36.25 2.66
3336 3657 1.377725 CCTGGAAGCTTCACCGCAT 60.378 57.895 27.02 0.00 0.00 4.73
3339 3660 3.536956 TTATACCTGGAAGCTTCACCG 57.463 47.619 27.02 15.14 0.00 4.94
3448 3769 3.930336 TCTCTTGTCTGCATCAACGAAT 58.070 40.909 0.00 0.00 0.00 3.34
3457 3778 3.367395 CCTCGTACATTCTCTTGTCTGCA 60.367 47.826 0.00 0.00 0.00 4.41
3530 3851 9.995003 ATTATATCTGAACAAGCAAACCAAAAA 57.005 25.926 0.00 0.00 0.00 1.94
3563 3884 5.314923 TGGCAATCATAAGCTGAAAGAAC 57.685 39.130 0.00 0.00 37.44 3.01
3564 3885 6.830324 ACTATGGCAATCATAAGCTGAAAGAA 59.170 34.615 0.00 0.00 37.83 2.52
3579 3900 6.491714 ACTATGAGAGAACACTATGGCAAT 57.508 37.500 0.00 0.00 0.00 3.56
3598 3919 7.006509 CCATGGGGAATCTTGTATGAAACTAT 58.993 38.462 2.85 0.00 35.59 2.12
3766 4175 1.922447 TCAGCAACCCTTCCATACCAT 59.078 47.619 0.00 0.00 0.00 3.55
3803 4212 8.909671 CATGTCATAGCTCAAAAGAAAGAAAAC 58.090 33.333 0.00 0.00 0.00 2.43
3807 4216 9.671279 TTATCATGTCATAGCTCAAAAGAAAGA 57.329 29.630 0.00 0.00 0.00 2.52
3822 4231 7.118723 ACCATGTAACACCTTTATCATGTCAT 58.881 34.615 0.00 0.00 33.27 3.06
3987 4403 7.609097 ACAAGTATGAGATGGACAGACATAT 57.391 36.000 0.00 0.00 32.81 1.78
3988 4404 7.423844 AACAAGTATGAGATGGACAGACATA 57.576 36.000 0.00 0.00 32.81 2.29
3989 4405 5.946942 ACAAGTATGAGATGGACAGACAT 57.053 39.130 0.00 0.00 32.81 3.06
3990 4406 5.745312 AACAAGTATGAGATGGACAGACA 57.255 39.130 0.00 0.00 32.81 3.41
3991 4407 7.324178 AGTAAACAAGTATGAGATGGACAGAC 58.676 38.462 0.00 0.00 0.00 3.51
3992 4408 7.482169 AGTAAACAAGTATGAGATGGACAGA 57.518 36.000 0.00 0.00 0.00 3.41
3993 4409 9.823647 ATAAGTAAACAAGTATGAGATGGACAG 57.176 33.333 0.00 0.00 0.00 3.51
4050 4515 8.696374 CAGACTAAAGTACAGATATCCCAAGAA 58.304 37.037 0.00 0.00 0.00 2.52
4108 4573 1.542915 ACCGCACTACTACGACACATT 59.457 47.619 0.00 0.00 0.00 2.71
4169 4645 6.225981 TGTATGAGAGCAGTATGAACATGT 57.774 37.500 0.00 0.00 39.69 3.21
4185 4661 7.233553 TCCTAAGGTCCACAAGATATGTATGAG 59.766 40.741 0.00 0.00 41.46 2.90
4216 4692 7.520451 AAATCCTAAGGTCCACAAAGTAAAC 57.480 36.000 0.00 0.00 0.00 2.01
4218 4694 7.981142 ACTAAATCCTAAGGTCCACAAAGTAA 58.019 34.615 0.00 0.00 0.00 2.24
4219 4695 7.563724 ACTAAATCCTAAGGTCCACAAAGTA 57.436 36.000 0.00 0.00 0.00 2.24
4220 4696 6.449830 ACTAAATCCTAAGGTCCACAAAGT 57.550 37.500 0.00 0.00 0.00 2.66
4221 4697 7.761038 AAACTAAATCCTAAGGTCCACAAAG 57.239 36.000 0.00 0.00 0.00 2.77
4222 4698 9.816787 AATAAACTAAATCCTAAGGTCCACAAA 57.183 29.630 0.00 0.00 0.00 2.83
4223 4699 9.816787 AAATAAACTAAATCCTAAGGTCCACAA 57.183 29.630 0.00 0.00 0.00 3.33
4224 4700 9.816787 AAAATAAACTAAATCCTAAGGTCCACA 57.183 29.630 0.00 0.00 0.00 4.17
4226 4702 9.816787 ACAAAATAAACTAAATCCTAAGGTCCA 57.183 29.630 0.00 0.00 0.00 4.02
4228 4704 9.569167 GCACAAAATAAACTAAATCCTAAGGTC 57.431 33.333 0.00 0.00 0.00 3.85
4305 4844 5.963586 CGAAAGCCTTTTTCGGTAATGTATC 59.036 40.000 12.72 0.00 45.17 2.24
4324 4863 2.163818 TAAGCATATCGGGGCGAAAG 57.836 50.000 0.00 0.00 39.99 2.62
4325 4864 2.851263 ATAAGCATATCGGGGCGAAA 57.149 45.000 0.00 0.00 39.99 3.46
4326 4865 2.563620 TGTATAAGCATATCGGGGCGAA 59.436 45.455 0.00 0.00 39.99 4.70
4327 4866 2.172679 TGTATAAGCATATCGGGGCGA 58.827 47.619 0.00 0.00 41.13 5.54
4328 4867 2.665649 TGTATAAGCATATCGGGGCG 57.334 50.000 0.00 0.00 34.54 6.13
4329 4868 4.096382 CCAAATGTATAAGCATATCGGGGC 59.904 45.833 0.00 0.00 0.00 5.80
4330 4869 5.123820 CACCAAATGTATAAGCATATCGGGG 59.876 44.000 0.00 0.00 0.00 5.73
4331 4870 5.391950 GCACCAAATGTATAAGCATATCGGG 60.392 44.000 0.00 0.00 0.00 5.14
4332 4871 5.181056 TGCACCAAATGTATAAGCATATCGG 59.819 40.000 0.00 0.00 0.00 4.18
4333 4872 6.239908 TGCACCAAATGTATAAGCATATCG 57.760 37.500 0.00 0.00 0.00 2.92
4334 4873 7.819644 TGATGCACCAAATGTATAAGCATATC 58.180 34.615 0.00 0.00 40.86 1.63
4335 4874 7.764141 TGATGCACCAAATGTATAAGCATAT 57.236 32.000 0.00 0.00 40.86 1.78
4336 4875 7.094248 GGATGATGCACCAAATGTATAAGCATA 60.094 37.037 0.00 0.00 40.86 3.14
4337 4876 6.294899 GGATGATGCACCAAATGTATAAGCAT 60.295 38.462 0.00 0.00 43.17 3.79
4338 4877 5.009911 GGATGATGCACCAAATGTATAAGCA 59.990 40.000 0.00 0.00 33.14 3.91
4339 4878 5.242393 AGGATGATGCACCAAATGTATAAGC 59.758 40.000 0.00 0.00 33.14 3.09
4340 4879 6.889301 AGGATGATGCACCAAATGTATAAG 57.111 37.500 0.00 0.00 33.14 1.73
4341 4880 7.062322 AGAAGGATGATGCACCAAATGTATAA 58.938 34.615 0.00 0.00 33.14 0.98
4342 4881 6.604171 AGAAGGATGATGCACCAAATGTATA 58.396 36.000 0.00 0.00 33.14 1.47
4343 4882 5.452255 AGAAGGATGATGCACCAAATGTAT 58.548 37.500 0.00 0.00 36.15 2.29
4344 4883 4.858850 AGAAGGATGATGCACCAAATGTA 58.141 39.130 0.00 0.00 0.00 2.29
4345 4884 3.698040 GAGAAGGATGATGCACCAAATGT 59.302 43.478 0.00 0.00 0.00 2.71
4346 4885 3.697542 TGAGAAGGATGATGCACCAAATG 59.302 43.478 0.00 0.00 0.00 2.32
4350 4889 2.240414 ACATGAGAAGGATGATGCACCA 59.760 45.455 0.00 0.00 0.00 4.17
4353 4892 6.182627 AGTAAAACATGAGAAGGATGATGCA 58.817 36.000 0.00 0.00 0.00 3.96
4404 4943 3.688694 TGGCACCTACAAATTACTCGT 57.311 42.857 0.00 0.00 0.00 4.18
4405 4944 5.331902 CAATTGGCACCTACAAATTACTCG 58.668 41.667 0.00 0.00 0.00 4.18
4407 4946 4.466015 CCCAATTGGCACCTACAAATTACT 59.534 41.667 19.75 0.00 0.00 2.24
4409 4948 3.772025 CCCCAATTGGCACCTACAAATTA 59.228 43.478 19.75 0.00 0.00 1.40
4411 4950 2.187100 CCCCAATTGGCACCTACAAAT 58.813 47.619 19.75 0.00 0.00 2.32
4481 5021 9.627395 GTATACAACATCTATGGAGTACACATC 57.373 37.037 6.37 0.00 0.00 3.06
4482 5022 9.368416 AGTATACAACATCTATGGAGTACACAT 57.632 33.333 5.50 7.98 0.00 3.21
4593 5133 2.885135 ACATCCAAAGCTGTCATCCA 57.115 45.000 0.00 0.00 0.00 3.41
4632 5172 4.039730 CCATGTCTCCCTGGTGATTAGTAG 59.960 50.000 0.00 0.00 0.00 2.57
4645 5185 4.415596 ACTCTATCTCATCCATGTCTCCC 58.584 47.826 0.00 0.00 0.00 4.30
4685 5226 2.494870 GCTTTTCATTCCTGATGTGGCT 59.505 45.455 0.00 0.00 37.06 4.75
4707 5248 2.435586 GCTCAGGCGCACAGATGT 60.436 61.111 10.83 0.00 0.00 3.06
4708 5249 3.200593 GGCTCAGGCGCACAGATG 61.201 66.667 10.83 0.00 39.81 2.90
4709 5250 2.547640 ATTGGCTCAGGCGCACAGAT 62.548 55.000 10.83 0.00 39.81 2.90
4710 5251 3.258228 ATTGGCTCAGGCGCACAGA 62.258 57.895 10.83 2.14 39.81 3.41
4712 5253 3.057548 CATTGGCTCAGGCGCACA 61.058 61.111 10.83 0.00 39.81 4.57
4713 5254 3.818787 CCATTGGCTCAGGCGCAC 61.819 66.667 10.83 0.00 39.81 5.34
4714 5255 3.982316 CTCCATTGGCTCAGGCGCA 62.982 63.158 10.83 0.00 39.81 6.09
4715 5256 3.207669 CTCCATTGGCTCAGGCGC 61.208 66.667 0.00 0.00 39.81 6.53
4724 5266 1.078918 TGCTGAGCGACTCCATTGG 60.079 57.895 0.00 0.00 0.00 3.16
4760 5302 5.535753 TCAAGACCATGATATGTCGATGT 57.464 39.130 0.00 0.00 0.00 3.06
4763 5305 6.581712 TCAATTCAAGACCATGATATGTCGA 58.418 36.000 0.00 0.00 0.00 4.20
4765 5307 7.446319 TCCATCAATTCAAGACCATGATATGTC 59.554 37.037 0.00 0.00 0.00 3.06
4766 5308 7.230108 GTCCATCAATTCAAGACCATGATATGT 59.770 37.037 0.00 0.00 0.00 2.29
4767 5309 7.447545 AGTCCATCAATTCAAGACCATGATATG 59.552 37.037 0.00 0.00 0.00 1.78
4768 5310 7.524290 AGTCCATCAATTCAAGACCATGATAT 58.476 34.615 0.00 0.00 0.00 1.63
4769 5311 6.903516 AGTCCATCAATTCAAGACCATGATA 58.096 36.000 0.00 0.00 0.00 2.15
4770 5312 5.763355 AGTCCATCAATTCAAGACCATGAT 58.237 37.500 0.00 0.00 0.00 2.45
4771 5313 5.183530 AGTCCATCAATTCAAGACCATGA 57.816 39.130 0.00 0.00 0.00 3.07
4820 5368 4.404394 TCCCCCAGAAGAAACAAAAGAAAC 59.596 41.667 0.00 0.00 0.00 2.78
4840 5388 1.098050 CATGCTGTTAGTTGCCTCCC 58.902 55.000 0.00 0.00 0.00 4.30
4849 5397 4.324471 TGCCAGGCATGCTGTTAG 57.676 55.556 18.92 3.60 31.71 2.34
4865 5413 2.327002 CTTGTCGCAATCGGCCCATG 62.327 60.000 0.00 0.00 40.09 3.66
4867 5415 2.535485 ATCTTGTCGCAATCGGCCCA 62.535 55.000 0.00 0.00 40.09 5.36
4868 5416 1.776034 GATCTTGTCGCAATCGGCCC 61.776 60.000 0.00 0.00 40.09 5.80
4869 5417 0.811616 AGATCTTGTCGCAATCGGCC 60.812 55.000 0.00 0.00 40.09 6.13
4892 5487 2.899256 ACCAATTGATCCACCCACTTTG 59.101 45.455 7.12 0.00 0.00 2.77
4893 5488 3.165071 GACCAATTGATCCACCCACTTT 58.835 45.455 7.12 0.00 0.00 2.66
4932 5527 5.051153 GGAGGGAAAACACGCAAAATTTTA 58.949 37.500 2.44 0.00 0.00 1.52
4950 5545 3.432890 GCTCATCACTTTCCTTAGGAGGG 60.433 52.174 0.00 1.11 43.72 4.30
4951 5546 3.432890 GGCTCATCACTTTCCTTAGGAGG 60.433 52.174 0.00 1.48 45.02 4.30
4954 5549 3.274288 GTGGCTCATCACTTTCCTTAGG 58.726 50.000 0.00 0.00 34.98 2.69
4957 5552 2.957402 TGTGGCTCATCACTTTCCTT 57.043 45.000 0.00 0.00 38.40 3.36
4975 5572 3.059051 CCAAAACCAACATCGGCATTTTG 60.059 43.478 0.00 0.00 34.29 2.44
4982 5579 1.333177 TTCCCCAAAACCAACATCGG 58.667 50.000 0.00 0.00 0.00 4.18
4986 5583 6.996180 TTAACATATTCCCCAAAACCAACA 57.004 33.333 0.00 0.00 0.00 3.33
4988 5585 7.456269 AGTGATTAACATATTCCCCAAAACCAA 59.544 33.333 0.00 0.00 0.00 3.67
4991 5588 9.797556 GTTAGTGATTAACATATTCCCCAAAAC 57.202 33.333 0.00 0.00 41.11 2.43
4996 5596 7.287810 ACTGGTTAGTGATTAACATATTCCCC 58.712 38.462 0.34 0.00 42.85 4.81
4998 5598 8.958119 TGACTGGTTAGTGATTAACATATTCC 57.042 34.615 0.34 0.00 42.85 3.01
5003 5603 5.877012 CAGCTGACTGGTTAGTGATTAACAT 59.123 40.000 8.42 0.00 42.85 2.71
5020 5620 2.000447 GAACATCGGTTACCAGCTGAC 59.000 52.381 17.39 5.24 37.36 3.51
5034 5634 9.827411 GGAACTTAAGTTACTCAATTGAACATC 57.173 33.333 21.31 4.14 38.56 3.06
5107 5721 3.654414 AGATTGTCGACTTCAGTGTTCC 58.346 45.455 17.92 0.00 0.00 3.62
5308 6088 7.982919 GGTAAGAAAGATAAAGAGGAGTCTTCC 59.017 40.741 0.00 0.00 42.59 3.46



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.