Multiple sequence alignment - TraesCS7D01G297400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G297400 | chr7D | 100.000 | 6938 | 0 | 0 | 1 | 6938 | 376069192 | 376062255 | 0.000000e+00 | 12813.0 |
1 | TraesCS7D01G297400 | chr7D | 81.545 | 699 | 94 | 15 | 2597 | 3270 | 66827409 | 66826721 | 1.700000e-150 | 544.0 |
2 | TraesCS7D01G297400 | chr7D | 96.364 | 165 | 6 | 0 | 6352 | 6516 | 296507680 | 296507844 | 8.870000e-69 | 272.0 |
3 | TraesCS7D01G297400 | chr7D | 89.216 | 102 | 10 | 1 | 2224 | 2324 | 533906529 | 533906630 | 7.310000e-25 | 126.0 |
4 | TraesCS7D01G297400 | chr7D | 100.000 | 41 | 0 | 0 | 6528 | 6568 | 376062626 | 376062586 | 7.460000e-10 | 76.8 |
5 | TraesCS7D01G297400 | chr7D | 100.000 | 41 | 0 | 0 | 6567 | 6607 | 376062665 | 376062625 | 7.460000e-10 | 76.8 |
6 | TraesCS7D01G297400 | chr7A | 93.411 | 3096 | 142 | 16 | 780 | 3854 | 422655707 | 422652653 | 0.000000e+00 | 4530.0 |
7 | TraesCS7D01G297400 | chr7A | 92.038 | 1683 | 92 | 13 | 3856 | 5513 | 422652529 | 422650864 | 0.000000e+00 | 2327.0 |
8 | TraesCS7D01G297400 | chr7A | 94.021 | 853 | 40 | 6 | 5512 | 6358 | 422650575 | 422649728 | 0.000000e+00 | 1282.0 |
9 | TraesCS7D01G297400 | chr7A | 88.663 | 688 | 53 | 18 | 1 | 672 | 422656443 | 422655765 | 0.000000e+00 | 815.0 |
10 | TraesCS7D01G297400 | chr7A | 98.058 | 206 | 1 | 2 | 6567 | 6772 | 422649726 | 422649524 | 8.560000e-94 | 355.0 |
11 | TraesCS7D01G297400 | chr7A | 94.578 | 166 | 6 | 1 | 6767 | 6929 | 422649484 | 422649319 | 3.210000e-63 | 254.0 |
12 | TraesCS7D01G297400 | chr7A | 87.255 | 102 | 12 | 1 | 2224 | 2324 | 613633951 | 613634052 | 1.580000e-21 | 115.0 |
13 | TraesCS7D01G297400 | chr7A | 100.000 | 50 | 0 | 0 | 6519 | 6568 | 422649735 | 422649686 | 7.410000e-15 | 93.5 |
14 | TraesCS7D01G297400 | chr7B | 93.949 | 2859 | 139 | 14 | 3528 | 6358 | 371028813 | 371025961 | 0.000000e+00 | 4290.0 |
15 | TraesCS7D01G297400 | chr7B | 94.743 | 2739 | 114 | 15 | 751 | 3483 | 371031524 | 371028810 | 0.000000e+00 | 4233.0 |
16 | TraesCS7D01G297400 | chr7B | 96.618 | 207 | 4 | 2 | 6567 | 6772 | 371025959 | 371025755 | 2.400000e-89 | 340.0 |
17 | TraesCS7D01G297400 | chr7B | 93.103 | 174 | 11 | 1 | 6355 | 6528 | 626602505 | 626602333 | 3.210000e-63 | 254.0 |
18 | TraesCS7D01G297400 | chr7B | 85.816 | 141 | 17 | 3 | 5204 | 5342 | 479997147 | 479997008 | 5.610000e-31 | 147.0 |
19 | TraesCS7D01G297400 | chr7B | 100.000 | 49 | 0 | 0 | 6519 | 6567 | 371025968 | 371025920 | 2.660000e-14 | 91.6 |
20 | TraesCS7D01G297400 | chr6D | 80.483 | 953 | 126 | 38 | 2335 | 3271 | 186783238 | 186782330 | 0.000000e+00 | 675.0 |
21 | TraesCS7D01G297400 | chr6D | 95.506 | 178 | 5 | 3 | 6341 | 6517 | 423084148 | 423084323 | 1.470000e-71 | 281.0 |
22 | TraesCS7D01G297400 | chr3B | 81.969 | 782 | 109 | 21 | 3571 | 4332 | 133427447 | 133428216 | 9.820000e-178 | 634.0 |
23 | TraesCS7D01G297400 | chr5A | 86.023 | 601 | 64 | 16 | 2334 | 2918 | 172464918 | 172465514 | 1.640000e-175 | 627.0 |
24 | TraesCS7D01G297400 | chr5A | 83.361 | 601 | 80 | 17 | 2334 | 2918 | 172582617 | 172583213 | 7.920000e-149 | 538.0 |
25 | TraesCS7D01G297400 | chr5A | 88.889 | 315 | 27 | 5 | 2334 | 2641 | 172509225 | 172509538 | 1.410000e-101 | 381.0 |
26 | TraesCS7D01G297400 | chr5A | 76.115 | 381 | 52 | 21 | 3764 | 4135 | 366765998 | 366765648 | 5.570000e-36 | 163.0 |
27 | TraesCS7D01G297400 | chr5D | 82.874 | 689 | 93 | 13 | 2597 | 3270 | 299422183 | 299422861 | 4.630000e-166 | 595.0 |
28 | TraesCS7D01G297400 | chr5D | 89.206 | 315 | 25 | 6 | 2485 | 2791 | 137055348 | 137055035 | 1.090000e-102 | 385.0 |
29 | TraesCS7D01G297400 | chr5D | 75.926 | 378 | 58 | 20 | 3764 | 4135 | 277637482 | 277637132 | 5.570000e-36 | 163.0 |
30 | TraesCS7D01G297400 | chr5D | 78.571 | 238 | 38 | 7 | 3571 | 3797 | 389518337 | 389518572 | 2.020000e-30 | 145.0 |
31 | TraesCS7D01G297400 | chr2D | 83.283 | 664 | 67 | 29 | 2490 | 3137 | 416403640 | 416404275 | 7.810000e-159 | 571.0 |
32 | TraesCS7D01G297400 | chr2D | 94.643 | 168 | 8 | 1 | 6350 | 6516 | 87407358 | 87407525 | 6.900000e-65 | 259.0 |
33 | TraesCS7D01G297400 | chr2D | 94.083 | 169 | 10 | 0 | 6350 | 6518 | 81004752 | 81004920 | 2.480000e-64 | 257.0 |
34 | TraesCS7D01G297400 | chr1A | 78.288 | 958 | 138 | 37 | 4607 | 5536 | 36163380 | 36164295 | 2.830000e-153 | 553.0 |
35 | TraesCS7D01G297400 | chr1A | 92.275 | 233 | 18 | 0 | 2335 | 2567 | 162990717 | 162990485 | 1.440000e-86 | 331.0 |
36 | TraesCS7D01G297400 | chr2A | 82.519 | 675 | 72 | 26 | 2490 | 3143 | 582640545 | 582641194 | 1.020000e-152 | 551.0 |
37 | TraesCS7D01G297400 | chr2A | 77.503 | 809 | 109 | 32 | 3572 | 4340 | 718606094 | 718605319 | 1.080000e-112 | 418.0 |
38 | TraesCS7D01G297400 | chr6A | 81.636 | 697 | 93 | 14 | 2600 | 3271 | 39499606 | 39498920 | 4.730000e-151 | 545.0 |
39 | TraesCS7D01G297400 | chr5B | 84.007 | 594 | 57 | 25 | 2334 | 2917 | 185723739 | 185723174 | 2.850000e-148 | 536.0 |
40 | TraesCS7D01G297400 | chr5B | 91.351 | 185 | 12 | 4 | 6341 | 6522 | 45271428 | 45271611 | 4.150000e-62 | 250.0 |
41 | TraesCS7D01G297400 | chr5B | 76.842 | 190 | 35 | 5 | 4151 | 4340 | 315864284 | 315864104 | 1.590000e-16 | 99.0 |
42 | TraesCS7D01G297400 | chr1B | 80.876 | 685 | 113 | 12 | 2597 | 3271 | 132063964 | 132063288 | 2.220000e-144 | 523.0 |
43 | TraesCS7D01G297400 | chr4B | 92.275 | 233 | 18 | 0 | 2335 | 2567 | 127102239 | 127102007 | 1.440000e-86 | 331.0 |
44 | TraesCS7D01G297400 | chr4B | 92.275 | 233 | 18 | 0 | 2335 | 2567 | 240104558 | 240104790 | 1.440000e-86 | 331.0 |
45 | TraesCS7D01G297400 | chr4A | 94.706 | 170 | 8 | 1 | 6352 | 6521 | 517406468 | 517406636 | 5.340000e-66 | 263.0 |
46 | TraesCS7D01G297400 | chr1D | 95.706 | 163 | 7 | 0 | 6355 | 6517 | 338937373 | 338937211 | 5.340000e-66 | 263.0 |
47 | TraesCS7D01G297400 | chr1D | 92.308 | 182 | 12 | 2 | 6336 | 6516 | 463381886 | 463382066 | 2.480000e-64 | 257.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G297400 | chr7D | 376062255 | 376069192 | 6937 | True | 12813.00 | 12813 | 100.000000 | 1 | 6938 | 1 | chr7D.!!$R2 | 6937 |
1 | TraesCS7D01G297400 | chr7D | 66826721 | 66827409 | 688 | True | 544.00 | 544 | 81.545000 | 2597 | 3270 | 1 | chr7D.!!$R1 | 673 |
2 | TraesCS7D01G297400 | chr7A | 422649319 | 422656443 | 7124 | True | 1379.50 | 4530 | 94.395571 | 1 | 6929 | 7 | chr7A.!!$R1 | 6928 |
3 | TraesCS7D01G297400 | chr7B | 371025755 | 371031524 | 5769 | True | 2238.65 | 4290 | 96.327500 | 751 | 6772 | 4 | chr7B.!!$R3 | 6021 |
4 | TraesCS7D01G297400 | chr6D | 186782330 | 186783238 | 908 | True | 675.00 | 675 | 80.483000 | 2335 | 3271 | 1 | chr6D.!!$R1 | 936 |
5 | TraesCS7D01G297400 | chr3B | 133427447 | 133428216 | 769 | False | 634.00 | 634 | 81.969000 | 3571 | 4332 | 1 | chr3B.!!$F1 | 761 |
6 | TraesCS7D01G297400 | chr5A | 172464918 | 172465514 | 596 | False | 627.00 | 627 | 86.023000 | 2334 | 2918 | 1 | chr5A.!!$F1 | 584 |
7 | TraesCS7D01G297400 | chr5A | 172582617 | 172583213 | 596 | False | 538.00 | 538 | 83.361000 | 2334 | 2918 | 1 | chr5A.!!$F3 | 584 |
8 | TraesCS7D01G297400 | chr5D | 299422183 | 299422861 | 678 | False | 595.00 | 595 | 82.874000 | 2597 | 3270 | 1 | chr5D.!!$F1 | 673 |
9 | TraesCS7D01G297400 | chr2D | 416403640 | 416404275 | 635 | False | 571.00 | 571 | 83.283000 | 2490 | 3137 | 1 | chr2D.!!$F3 | 647 |
10 | TraesCS7D01G297400 | chr1A | 36163380 | 36164295 | 915 | False | 553.00 | 553 | 78.288000 | 4607 | 5536 | 1 | chr1A.!!$F1 | 929 |
11 | TraesCS7D01G297400 | chr2A | 582640545 | 582641194 | 649 | False | 551.00 | 551 | 82.519000 | 2490 | 3143 | 1 | chr2A.!!$F1 | 653 |
12 | TraesCS7D01G297400 | chr2A | 718605319 | 718606094 | 775 | True | 418.00 | 418 | 77.503000 | 3572 | 4340 | 1 | chr2A.!!$R1 | 768 |
13 | TraesCS7D01G297400 | chr6A | 39498920 | 39499606 | 686 | True | 545.00 | 545 | 81.636000 | 2600 | 3271 | 1 | chr6A.!!$R1 | 671 |
14 | TraesCS7D01G297400 | chr5B | 185723174 | 185723739 | 565 | True | 536.00 | 536 | 84.007000 | 2334 | 2917 | 1 | chr5B.!!$R1 | 583 |
15 | TraesCS7D01G297400 | chr1B | 132063288 | 132063964 | 676 | True | 523.00 | 523 | 80.876000 | 2597 | 3271 | 1 | chr1B.!!$R1 | 674 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
631 | 646 | 0.036022 | AGGTGAGTTGCTGCTTCCTC | 59.964 | 55.0 | 0.0 | 4.17 | 0.00 | 3.71 | F |
749 | 764 | 0.324091 | AGTCGGTCGGTCCCATACTT | 60.324 | 55.0 | 0.0 | 0.00 | 0.00 | 2.24 | F |
863 | 878 | 0.326264 | CCCAGAAACCAGAGTCCCTG | 59.674 | 60.0 | 0.0 | 0.00 | 42.55 | 4.45 | F |
2240 | 2266 | 0.821711 | AGGCACTAAAACGCAAGGCA | 60.822 | 50.0 | 0.0 | 0.00 | 38.92 | 4.75 | F |
2852 | 2908 | 0.044855 | AGGGGTGGGATAGAAGCAGT | 59.955 | 55.0 | 0.0 | 0.00 | 0.00 | 4.40 | F |
3740 | 3850 | 0.320771 | AAGTGACAGACGGCACCATC | 60.321 | 55.0 | 0.0 | 0.00 | 35.67 | 3.51 | F |
4647 | 4918 | 0.106669 | GGTAGGGGTGGGCAGAAATC | 60.107 | 60.0 | 0.0 | 0.00 | 0.00 | 2.17 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2522 | 2548 | 0.110147 | GAGCTACATCCGACGATCCG | 60.110 | 60.000 | 0.0 | 0.0 | 0.00 | 4.18 | R |
2691 | 2723 | 2.592512 | ACCTCTTCTCTCCTTCCCCATA | 59.407 | 50.000 | 0.0 | 0.0 | 0.00 | 2.74 | R |
2757 | 2789 | 1.007600 | TCCTTCTCCTCTGCATCCAGA | 59.992 | 52.381 | 0.0 | 0.0 | 45.54 | 3.86 | R |
3824 | 3939 | 0.178975 | TTGATGGGTTTTGGGCGACT | 60.179 | 50.000 | 0.0 | 0.0 | 0.00 | 4.18 | R |
4149 | 4414 | 0.240945 | CGTGGGTGCTGATTTTGGTC | 59.759 | 55.000 | 0.0 | 0.0 | 0.00 | 4.02 | R |
4871 | 5154 | 0.107312 | CGAGGTAGGAGAACGGAGGA | 60.107 | 60.000 | 0.0 | 0.0 | 0.00 | 3.71 | R |
6568 | 7184 | 0.036577 | GACCACTCAGTCAGCAGCAT | 60.037 | 55.000 | 0.0 | 0.0 | 36.73 | 3.79 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
38 | 40 | 8.661352 | TTCTTTCCATTTTTCATCTGTTTTCC | 57.339 | 30.769 | 0.00 | 0.00 | 0.00 | 3.13 |
42 | 44 | 7.219484 | TCCATTTTTCATCTGTTTTCCTCTC | 57.781 | 36.000 | 0.00 | 0.00 | 0.00 | 3.20 |
85 | 89 | 6.328641 | ACACGTGTCTACTCTTCTTTACAT | 57.671 | 37.500 | 17.22 | 0.00 | 0.00 | 2.29 |
159 | 163 | 7.514784 | TTCCAATATATGCCTTTGACATCTG | 57.485 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
191 | 200 | 6.591062 | TCATGTACGTTGTTTTCCTATACACC | 59.409 | 38.462 | 0.00 | 0.00 | 0.00 | 4.16 |
212 | 221 | 6.659242 | ACACCAGGAACATTCTTTTATACCAG | 59.341 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
216 | 225 | 9.238368 | CCAGGAACATTCTTTTATACCAGTTTA | 57.762 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
316 | 325 | 9.921637 | ATGTTTTCATATCGGTTGTACATTTTT | 57.078 | 25.926 | 0.00 | 0.00 | 38.95 | 1.94 |
610 | 625 | 3.727258 | CATTGACCGGGCTCCCCA | 61.727 | 66.667 | 9.82 | 0.00 | 45.83 | 4.96 |
631 | 646 | 0.036022 | AGGTGAGTTGCTGCTTCCTC | 59.964 | 55.000 | 0.00 | 4.17 | 0.00 | 3.71 |
739 | 754 | 4.541085 | AAAACAAAAGTTAGTCGGTCGG | 57.459 | 40.909 | 0.00 | 0.00 | 0.00 | 4.79 |
747 | 762 | 1.066152 | GTTAGTCGGTCGGTCCCATAC | 59.934 | 57.143 | 0.00 | 0.00 | 0.00 | 2.39 |
748 | 763 | 0.548031 | TAGTCGGTCGGTCCCATACT | 59.452 | 55.000 | 0.00 | 0.00 | 0.00 | 2.12 |
749 | 764 | 0.324091 | AGTCGGTCGGTCCCATACTT | 60.324 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
785 | 800 | 1.069636 | CAAGTTGTCGAAAGAGCAGGC | 60.070 | 52.381 | 0.00 | 0.00 | 43.49 | 4.85 |
863 | 878 | 0.326264 | CCCAGAAACCAGAGTCCCTG | 59.674 | 60.000 | 0.00 | 0.00 | 42.55 | 4.45 |
958 | 974 | 4.803426 | CTGCCGACCAGCGTCCTC | 62.803 | 72.222 | 0.00 | 0.00 | 38.67 | 3.71 |
1289 | 1305 | 6.402226 | GCGTAATTAGTCAATGCCTATAAGCC | 60.402 | 42.308 | 0.00 | 0.00 | 0.00 | 4.35 |
1311 | 1327 | 2.615493 | GCCTGCCTGTTTTAGTAGAGCA | 60.615 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1314 | 1330 | 4.081642 | CCTGCCTGTTTTAGTAGAGCACTA | 60.082 | 45.833 | 0.00 | 0.00 | 38.80 | 2.74 |
1460 | 1478 | 1.219213 | TGGTTGGTTCCTGTTGGGATT | 59.781 | 47.619 | 0.00 | 0.00 | 44.66 | 3.01 |
1509 | 1528 | 6.948886 | TGGTGCAATGGTTAAGGTTTATCTTA | 59.051 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
1583 | 1603 | 1.905215 | ACTAGTGATGGTTGCTCTGCT | 59.095 | 47.619 | 0.00 | 0.00 | 0.00 | 4.24 |
1677 | 1698 | 2.238646 | TGGTATCCACGCTTCCTGAAAT | 59.761 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
1689 | 1711 | 7.218773 | CACGCTTCCTGAAATACATACAATTTG | 59.781 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
1902 | 1924 | 2.386661 | CCAGACATGGTTAGCTCGTT | 57.613 | 50.000 | 0.00 | 0.00 | 42.17 | 3.85 |
1919 | 1942 | 4.712763 | CTCGTTCTGTACCAAAAATCTGC | 58.287 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
1942 | 1965 | 5.972382 | GCTAGTACTCGTTTGATCTTGGTAG | 59.028 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1960 | 1983 | 8.818860 | TCTTGGTAGGTTAAGCTTCTTGTAATA | 58.181 | 33.333 | 13.21 | 0.00 | 0.00 | 0.98 |
2118 | 2144 | 2.841881 | GGTCCCTTAATCCCAGTACACA | 59.158 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
2123 | 2149 | 5.968167 | TCCCTTAATCCCAGTACACATTACT | 59.032 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2144 | 2170 | 8.534333 | TTACTCATGTAACAATCTGAACAGTC | 57.466 | 34.615 | 1.73 | 0.00 | 34.10 | 3.51 |
2196 | 2222 | 5.983118 | GGTTTAAAAGCTAACATTGTGCTGT | 59.017 | 36.000 | 2.70 | 0.00 | 37.11 | 4.40 |
2197 | 2223 | 6.074356 | GGTTTAAAAGCTAACATTGTGCTGTG | 60.074 | 38.462 | 2.70 | 0.00 | 37.11 | 3.66 |
2225 | 2251 | 4.143333 | GTAAGGCGAGGCGAGGCA | 62.143 | 66.667 | 10.83 | 0.00 | 36.55 | 4.75 |
2234 | 2260 | 1.967597 | GAGGCGAGGCACTAAAACGC | 61.968 | 60.000 | 0.00 | 0.00 | 45.25 | 4.84 |
2240 | 2266 | 0.821711 | AGGCACTAAAACGCAAGGCA | 60.822 | 50.000 | 0.00 | 0.00 | 38.92 | 4.75 |
2243 | 2269 | 1.001815 | GCACTAAAACGCAAGGCAAGA | 60.002 | 47.619 | 0.00 | 0.00 | 46.39 | 3.02 |
2307 | 2333 | 8.947115 | ACAATTAGGAGATTTAACAACTAGCAC | 58.053 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
2350 | 2376 | 8.965819 | ACATACATATGTGTTTAAGGAATTGCA | 58.034 | 29.630 | 18.81 | 0.00 | 44.66 | 4.08 |
2480 | 2506 | 4.690748 | CCACACAATGTACACTGGAGTAAG | 59.309 | 45.833 | 9.42 | 0.00 | 0.00 | 2.34 |
2522 | 2548 | 2.369394 | CAGAACCCATACTTCCAAGCC | 58.631 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
2691 | 2723 | 5.426689 | TCACTAGAGCAACCAGATCAAAT | 57.573 | 39.130 | 0.00 | 0.00 | 34.30 | 2.32 |
2757 | 2789 | 2.174424 | GGAGAAGCAGATTTGGGAGGAT | 59.826 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2758 | 2790 | 3.475575 | GAGAAGCAGATTTGGGAGGATC | 58.524 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2845 | 2901 | 2.907042 | GAGTATTGGAGGGGTGGGATAG | 59.093 | 54.545 | 0.00 | 0.00 | 0.00 | 2.08 |
2852 | 2908 | 0.044855 | AGGGGTGGGATAGAAGCAGT | 59.955 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3006 | 3068 | 4.443658 | AGAGGAGAAAAGGAATCCCTCTT | 58.556 | 43.478 | 0.00 | 0.00 | 45.82 | 2.85 |
3027 | 3089 | 0.515564 | CGTGGATTGGACGTTTGGTC | 59.484 | 55.000 | 0.00 | 0.00 | 45.31 | 4.02 |
3092 | 3176 | 1.078347 | GTGGGCCCAATCTTTCCCA | 59.922 | 57.895 | 30.64 | 0.00 | 45.87 | 4.37 |
3284 | 3368 | 1.909700 | CGCCCCTATTGCCATTACAT | 58.090 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3293 | 3377 | 5.351465 | CCTATTGCCATTACATACGCCTTAG | 59.649 | 44.000 | 0.00 | 0.00 | 0.00 | 2.18 |
3303 | 3387 | 4.839121 | ACATACGCCTTAGAAACAATGGA | 58.161 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
3307 | 3391 | 2.223572 | CGCCTTAGAAACAATGGATGGC | 60.224 | 50.000 | 0.00 | 0.00 | 35.02 | 4.40 |
3318 | 3402 | 6.564557 | AACAATGGATGGCATATCCTTTTT | 57.435 | 33.333 | 17.15 | 9.55 | 38.95 | 1.94 |
3425 | 3509 | 4.301072 | TGGGCAGCTAAGTTGAACTAAT | 57.699 | 40.909 | 0.00 | 0.00 | 0.00 | 1.73 |
3526 | 3610 | 7.445945 | AGTGAAGATTGCTTGTTACTAGAAGT | 58.554 | 34.615 | 0.00 | 0.00 | 33.61 | 3.01 |
3595 | 3681 | 4.713553 | TGCTTCAGTGTTCCTTGTATTGA | 58.286 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
3740 | 3850 | 0.320771 | AAGTGACAGACGGCACCATC | 60.321 | 55.000 | 0.00 | 0.00 | 35.67 | 3.51 |
3824 | 3939 | 5.907207 | TCCATCAAATCAAAACGGAAACAA | 58.093 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
3920 | 4157 | 2.938428 | TGCCTATCCCCAAACCAAAT | 57.062 | 45.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3921 | 4158 | 2.465813 | TGCCTATCCCCAAACCAAATG | 58.534 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
3943 | 4180 | 6.624352 | TGAAAACTGAAAGAAGGATCACAG | 57.376 | 37.500 | 0.00 | 0.00 | 37.43 | 3.66 |
4010 | 4247 | 4.278669 | AGTCACACGACATGAAGTAGTTCT | 59.721 | 41.667 | 11.52 | 0.00 | 45.23 | 3.01 |
4051 | 4288 | 2.102578 | GCAACATATTCTGGTGGCCTT | 58.897 | 47.619 | 3.32 | 0.00 | 43.24 | 4.35 |
4060 | 4297 | 0.540365 | CTGGTGGCCTTGGTGATGTT | 60.540 | 55.000 | 3.32 | 0.00 | 0.00 | 2.71 |
4063 | 4300 | 1.549203 | GTGGCCTTGGTGATGTTGAT | 58.451 | 50.000 | 3.32 | 0.00 | 0.00 | 2.57 |
4102 | 4342 | 1.461127 | GATGCCGACACTGAACTTGTC | 59.539 | 52.381 | 0.00 | 0.00 | 40.10 | 3.18 |
4122 | 4362 | 1.492599 | CCTTCCCCTCCTTCATCCTTC | 59.507 | 57.143 | 0.00 | 0.00 | 0.00 | 3.46 |
4149 | 4414 | 5.833082 | AGTTGAACTATCTGTGCCTATACG | 58.167 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
4190 | 4456 | 3.956199 | GAGGCCAAGAAATCATTCATCCA | 59.044 | 43.478 | 5.01 | 0.00 | 38.06 | 3.41 |
4207 | 4473 | 0.746063 | CCATTGTGGCGGCATTACAT | 59.254 | 50.000 | 17.19 | 1.92 | 0.00 | 2.29 |
4215 | 4481 | 0.944386 | GCGGCATTACATCGGTTCAT | 59.056 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4259 | 4525 | 2.815647 | GAACCCCGCGAGCTTGAG | 60.816 | 66.667 | 8.23 | 0.21 | 0.00 | 3.02 |
4305 | 4571 | 1.972223 | CACGGAGGAGTGGACGACT | 60.972 | 63.158 | 0.00 | 0.00 | 38.40 | 4.18 |
4353 | 4619 | 3.270877 | GCAATAGGTCGAGGTTCAACAT | 58.729 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
4362 | 4628 | 1.003580 | GAGGTTCAACATGGAGGAGCA | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
4368 | 4634 | 1.134580 | CAACATGGAGGAGCAGACGAT | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 3.73 |
4399 | 4665 | 0.379669 | GCCCAATCTCGTTGATGCAG | 59.620 | 55.000 | 0.00 | 0.00 | 40.37 | 4.41 |
4400 | 4666 | 0.379669 | CCCAATCTCGTTGATGCAGC | 59.620 | 55.000 | 0.00 | 0.00 | 40.37 | 5.25 |
4491 | 4757 | 3.222354 | GACGCCACAGTCTCCGGTT | 62.222 | 63.158 | 0.00 | 0.00 | 38.09 | 4.44 |
4646 | 4917 | 1.921869 | CGGTAGGGGTGGGCAGAAAT | 61.922 | 60.000 | 0.00 | 0.00 | 0.00 | 2.17 |
4647 | 4918 | 0.106669 | GGTAGGGGTGGGCAGAAATC | 60.107 | 60.000 | 0.00 | 0.00 | 0.00 | 2.17 |
4649 | 4920 | 0.551377 | TAGGGGTGGGCAGAAATCCA | 60.551 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4726 | 4999 | 4.448210 | TGTTCAAAACCGAACTTAGCTCT | 58.552 | 39.130 | 0.00 | 0.00 | 44.59 | 4.09 |
4871 | 5154 | 1.475751 | CCATTCTTCACCATAGCGCCT | 60.476 | 52.381 | 2.29 | 0.00 | 0.00 | 5.52 |
4956 | 5259 | 0.745845 | CTTCTGTCCTTCATGGCCGG | 60.746 | 60.000 | 0.00 | 0.00 | 35.26 | 6.13 |
4983 | 5286 | 1.486310 | TGCCAGAATCTCCTAACGCAT | 59.514 | 47.619 | 0.00 | 0.00 | 0.00 | 4.73 |
5020 | 5323 | 0.333993 | ATGGCTTCACATGGCTTCCT | 59.666 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
5131 | 5437 | 4.464947 | CATTTCCTTCCTCCTACCATTCC | 58.535 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
5135 | 5441 | 0.830648 | TTCCTCCTACCATTCCTGCG | 59.169 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 |
5192 | 5498 | 9.267096 | GTTTCTTGCTTATTAAGATTTGACTCG | 57.733 | 33.333 | 7.63 | 0.00 | 34.42 | 4.18 |
5206 | 5512 | 4.336889 | TTGACTCGTGATTTGTTCCTCT | 57.663 | 40.909 | 0.00 | 0.00 | 0.00 | 3.69 |
5389 | 5695 | 3.163467 | AGACCAAACGCCTAGTCTAACT | 58.837 | 45.455 | 0.00 | 0.00 | 37.81 | 2.24 |
5428 | 5734 | 7.176690 | AGTGACAAAAAGTAAATCCCATGTAGG | 59.823 | 37.037 | 0.00 | 0.00 | 37.03 | 3.18 |
5429 | 5735 | 7.007723 | TGACAAAAAGTAAATCCCATGTAGGT | 58.992 | 34.615 | 0.00 | 0.00 | 34.66 | 3.08 |
5430 | 5736 | 7.175990 | TGACAAAAAGTAAATCCCATGTAGGTC | 59.824 | 37.037 | 0.00 | 0.00 | 34.66 | 3.85 |
5471 | 5792 | 1.247567 | AAGTCGTGGGGCAAAATCTG | 58.752 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
5504 | 5825 | 6.491403 | ACACCTTAATTGATTGTGAGAGCTTT | 59.509 | 34.615 | 6.93 | 0.00 | 0.00 | 3.51 |
5546 | 6158 | 4.393062 | AGTGAATTAAAGGACGAGTGCATG | 59.607 | 41.667 | 0.00 | 0.00 | 0.00 | 4.06 |
5636 | 6249 | 4.876125 | AGTTGCCTGTATGTCAGATATCG | 58.124 | 43.478 | 0.00 | 0.00 | 46.27 | 2.92 |
5646 | 6259 | 5.535753 | ATGTCAGATATCGTTCATGTCCA | 57.464 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
5682 | 6295 | 1.858458 | CCATGTATGTTACGCCACTCG | 59.142 | 52.381 | 0.00 | 0.00 | 45.38 | 4.18 |
5694 | 6307 | 0.450583 | GCCACTCGTGTCATACTCGA | 59.549 | 55.000 | 4.44 | 4.44 | 41.06 | 4.04 |
5700 | 6313 | 0.169672 | CGTGTCATACTCGACCGGTT | 59.830 | 55.000 | 9.42 | 0.00 | 37.28 | 4.44 |
5715 | 6328 | 7.446625 | ACTCGACCGGTTAATTAGTATATCTGT | 59.553 | 37.037 | 9.42 | 0.00 | 0.00 | 3.41 |
5740 | 6354 | 1.322637 | CACTCGATGCATCTGTTCGTG | 59.677 | 52.381 | 23.73 | 17.20 | 34.60 | 4.35 |
5954 | 6568 | 6.183360 | GGCGGCTGATTGATATAGTTTATTCC | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
6177 | 6791 | 4.098044 | TGACGTCATTAGATCAGGTCCTTC | 59.902 | 45.833 | 15.76 | 0.00 | 0.00 | 3.46 |
6281 | 6897 | 3.909995 | TCCCTGAAATTTCCTGAGACTCA | 59.090 | 43.478 | 15.48 | 4.78 | 0.00 | 3.41 |
6283 | 6899 | 4.457257 | CCCTGAAATTTCCTGAGACTCAAC | 59.543 | 45.833 | 15.48 | 0.00 | 0.00 | 3.18 |
6286 | 6902 | 6.433847 | TGAAATTTCCTGAGACTCAACCTA | 57.566 | 37.500 | 15.48 | 0.00 | 0.00 | 3.08 |
6350 | 6966 | 3.253188 | TGAGAAGTGCTAACATTGTTGGC | 59.747 | 43.478 | 25.67 | 25.67 | 0.00 | 4.52 |
6351 | 6967 | 3.221771 | AGAAGTGCTAACATTGTTGGCA | 58.778 | 40.909 | 29.61 | 29.61 | 0.00 | 4.92 |
6352 | 6968 | 3.828451 | AGAAGTGCTAACATTGTTGGCAT | 59.172 | 39.130 | 33.63 | 23.28 | 35.37 | 4.40 |
6353 | 6969 | 3.581024 | AGTGCTAACATTGTTGGCATG | 57.419 | 42.857 | 33.63 | 4.03 | 35.37 | 4.06 |
6354 | 6970 | 2.892852 | AGTGCTAACATTGTTGGCATGT | 59.107 | 40.909 | 33.63 | 24.18 | 35.37 | 3.21 |
6355 | 6971 | 4.078537 | AGTGCTAACATTGTTGGCATGTA | 58.921 | 39.130 | 33.63 | 15.43 | 35.37 | 2.29 |
6356 | 6972 | 4.082787 | AGTGCTAACATTGTTGGCATGTAC | 60.083 | 41.667 | 33.63 | 23.68 | 35.37 | 2.90 |
6357 | 6973 | 4.078537 | TGCTAACATTGTTGGCATGTACT | 58.921 | 39.130 | 29.61 | 0.00 | 0.00 | 2.73 |
6358 | 6974 | 4.155826 | TGCTAACATTGTTGGCATGTACTC | 59.844 | 41.667 | 29.61 | 6.28 | 0.00 | 2.59 |
6359 | 6975 | 4.438744 | GCTAACATTGTTGGCATGTACTCC | 60.439 | 45.833 | 26.93 | 0.43 | 0.00 | 3.85 |
6360 | 6976 | 2.446435 | ACATTGTTGGCATGTACTCCC | 58.554 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
6361 | 6977 | 2.041620 | ACATTGTTGGCATGTACTCCCT | 59.958 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
6362 | 6978 | 2.489938 | TTGTTGGCATGTACTCCCTC | 57.510 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
6363 | 6979 | 0.618458 | TGTTGGCATGTACTCCCTCC | 59.382 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
6364 | 6980 | 0.462047 | GTTGGCATGTACTCCCTCCG | 60.462 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
6365 | 6981 | 0.907704 | TTGGCATGTACTCCCTCCGT | 60.908 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
6366 | 6982 | 0.907704 | TGGCATGTACTCCCTCCGTT | 60.908 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
6367 | 6983 | 0.179081 | GGCATGTACTCCCTCCGTTC | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 3.95 |
6368 | 6984 | 0.179081 | GCATGTACTCCCTCCGTTCC | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 3.62 |
6369 | 6985 | 1.486211 | CATGTACTCCCTCCGTTCCT | 58.514 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
6370 | 6986 | 2.662866 | CATGTACTCCCTCCGTTCCTA | 58.337 | 52.381 | 0.00 | 0.00 | 0.00 | 2.94 |
6371 | 6987 | 2.905415 | TGTACTCCCTCCGTTCCTAA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
6372 | 6988 | 3.173953 | TGTACTCCCTCCGTTCCTAAA | 57.826 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
6373 | 6989 | 3.716431 | TGTACTCCCTCCGTTCCTAAAT | 58.284 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
6374 | 6990 | 4.870636 | TGTACTCCCTCCGTTCCTAAATA | 58.129 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
6375 | 6991 | 5.461327 | TGTACTCCCTCCGTTCCTAAATAT | 58.539 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
6376 | 6992 | 6.613699 | TGTACTCCCTCCGTTCCTAAATATA | 58.386 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
6377 | 6993 | 7.068702 | TGTACTCCCTCCGTTCCTAAATATAA | 58.931 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
6378 | 6994 | 6.667558 | ACTCCCTCCGTTCCTAAATATAAG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
6379 | 6995 | 6.141790 | ACTCCCTCCGTTCCTAAATATAAGT | 58.858 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
6380 | 6996 | 6.267242 | ACTCCCTCCGTTCCTAAATATAAGTC | 59.733 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
6381 | 6997 | 6.379579 | TCCCTCCGTTCCTAAATATAAGTCT | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
6382 | 6998 | 6.842807 | TCCCTCCGTTCCTAAATATAAGTCTT | 59.157 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
6383 | 6999 | 7.346436 | TCCCTCCGTTCCTAAATATAAGTCTTT | 59.654 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
6384 | 7000 | 7.991460 | CCCTCCGTTCCTAAATATAAGTCTTTT | 59.009 | 37.037 | 0.00 | 0.00 | 0.00 | 2.27 |
6385 | 7001 | 9.392259 | CCTCCGTTCCTAAATATAAGTCTTTTT | 57.608 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
6401 | 7017 | 7.856145 | AGTCTTTTTAGAGATTGCACTATGG | 57.144 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
6402 | 7018 | 7.624549 | AGTCTTTTTAGAGATTGCACTATGGA | 58.375 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
6403 | 7019 | 7.550906 | AGTCTTTTTAGAGATTGCACTATGGAC | 59.449 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
6404 | 7020 | 7.550906 | GTCTTTTTAGAGATTGCACTATGGACT | 59.449 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
6405 | 7021 | 8.758829 | TCTTTTTAGAGATTGCACTATGGACTA | 58.241 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
6406 | 7022 | 8.718102 | TTTTTAGAGATTGCACTATGGACTAC | 57.282 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
6407 | 7023 | 7.418337 | TTTAGAGATTGCACTATGGACTACA | 57.582 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
6408 | 7024 | 7.603180 | TTAGAGATTGCACTATGGACTACAT | 57.397 | 36.000 | 0.00 | 0.00 | 43.68 | 2.29 |
6409 | 7025 | 8.706322 | TTAGAGATTGCACTATGGACTACATA | 57.294 | 34.615 | 0.00 | 0.00 | 41.03 | 2.29 |
6410 | 7026 | 6.987386 | AGAGATTGCACTATGGACTACATAC | 58.013 | 40.000 | 0.00 | 0.00 | 41.03 | 2.39 |
6411 | 7027 | 5.773575 | AGATTGCACTATGGACTACATACG | 58.226 | 41.667 | 0.00 | 0.00 | 41.03 | 3.06 |
6412 | 7028 | 4.316205 | TTGCACTATGGACTACATACGG | 57.684 | 45.455 | 0.00 | 0.00 | 41.03 | 4.02 |
6413 | 7029 | 3.558033 | TGCACTATGGACTACATACGGA | 58.442 | 45.455 | 0.00 | 0.00 | 41.03 | 4.69 |
6414 | 7030 | 3.568430 | TGCACTATGGACTACATACGGAG | 59.432 | 47.826 | 0.00 | 0.00 | 41.03 | 4.63 |
6415 | 7031 | 3.612004 | GCACTATGGACTACATACGGAGC | 60.612 | 52.174 | 0.00 | 0.00 | 41.03 | 4.70 |
6416 | 7032 | 3.568430 | CACTATGGACTACATACGGAGCA | 59.432 | 47.826 | 0.00 | 0.00 | 41.03 | 4.26 |
6417 | 7033 | 4.037565 | CACTATGGACTACATACGGAGCAA | 59.962 | 45.833 | 0.00 | 0.00 | 41.03 | 3.91 |
6418 | 7034 | 4.647853 | ACTATGGACTACATACGGAGCAAA | 59.352 | 41.667 | 0.00 | 0.00 | 41.03 | 3.68 |
6419 | 7035 | 3.965379 | TGGACTACATACGGAGCAAAA | 57.035 | 42.857 | 0.00 | 0.00 | 0.00 | 2.44 |
6420 | 7036 | 4.481368 | TGGACTACATACGGAGCAAAAT | 57.519 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
6421 | 7037 | 4.188462 | TGGACTACATACGGAGCAAAATG | 58.812 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
6422 | 7038 | 4.081365 | TGGACTACATACGGAGCAAAATGA | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
6423 | 7039 | 4.508124 | GGACTACATACGGAGCAAAATGAG | 59.492 | 45.833 | 0.00 | 0.00 | 0.00 | 2.90 |
6424 | 7040 | 5.086104 | ACTACATACGGAGCAAAATGAGT | 57.914 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
6425 | 7041 | 4.870426 | ACTACATACGGAGCAAAATGAGTG | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
6426 | 7042 | 3.937814 | ACATACGGAGCAAAATGAGTGA | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
6427 | 7043 | 4.323417 | ACATACGGAGCAAAATGAGTGAA | 58.677 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
6428 | 7044 | 4.943705 | ACATACGGAGCAAAATGAGTGAAT | 59.056 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
6429 | 7045 | 5.065218 | ACATACGGAGCAAAATGAGTGAATC | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
6430 | 7046 | 3.679389 | ACGGAGCAAAATGAGTGAATCT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
6431 | 7047 | 4.832248 | ACGGAGCAAAATGAGTGAATCTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 1.98 |
6432 | 7048 | 5.431765 | ACGGAGCAAAATGAGTGAATCTAT | 58.568 | 37.500 | 0.00 | 0.00 | 0.00 | 1.98 |
6433 | 7049 | 6.582636 | ACGGAGCAAAATGAGTGAATCTATA | 58.417 | 36.000 | 0.00 | 0.00 | 0.00 | 1.31 |
6434 | 7050 | 7.220030 | ACGGAGCAAAATGAGTGAATCTATAT | 58.780 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
6435 | 7051 | 7.716998 | ACGGAGCAAAATGAGTGAATCTATATT | 59.283 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
6436 | 7052 | 8.226448 | CGGAGCAAAATGAGTGAATCTATATTC | 58.774 | 37.037 | 0.00 | 0.00 | 41.69 | 1.75 |
6437 | 7053 | 9.282569 | GGAGCAAAATGAGTGAATCTATATTCT | 57.717 | 33.333 | 2.89 | 0.00 | 41.83 | 2.40 |
6468 | 7084 | 8.783833 | ATGTCTATATACATCCGTACGTAGTT | 57.216 | 34.615 | 15.21 | 0.00 | 37.47 | 2.24 |
6469 | 7085 | 8.607441 | TGTCTATATACATCCGTACGTAGTTT | 57.393 | 34.615 | 15.21 | 7.24 | 37.78 | 2.66 |
6470 | 7086 | 8.498358 | TGTCTATATACATCCGTACGTAGTTTG | 58.502 | 37.037 | 15.21 | 6.57 | 37.78 | 2.93 |
6471 | 7087 | 8.499162 | GTCTATATACATCCGTACGTAGTTTGT | 58.501 | 37.037 | 15.21 | 11.74 | 37.78 | 2.83 |
6472 | 7088 | 9.705290 | TCTATATACATCCGTACGTAGTTTGTA | 57.295 | 33.333 | 15.21 | 13.36 | 37.78 | 2.41 |
6473 | 7089 | 9.964253 | CTATATACATCCGTACGTAGTTTGTAG | 57.036 | 37.037 | 15.21 | 11.53 | 37.78 | 2.74 |
6474 | 7090 | 6.683974 | ATACATCCGTACGTAGTTTGTAGT | 57.316 | 37.500 | 15.21 | 3.94 | 37.78 | 2.73 |
6475 | 7091 | 4.726416 | ACATCCGTACGTAGTTTGTAGTG | 58.274 | 43.478 | 15.21 | 0.00 | 37.78 | 2.74 |
6476 | 7092 | 3.829886 | TCCGTACGTAGTTTGTAGTGG | 57.170 | 47.619 | 15.21 | 0.00 | 37.78 | 4.00 |
6477 | 7093 | 3.407698 | TCCGTACGTAGTTTGTAGTGGA | 58.592 | 45.455 | 15.21 | 0.00 | 37.78 | 4.02 |
6478 | 7094 | 3.818210 | TCCGTACGTAGTTTGTAGTGGAA | 59.182 | 43.478 | 15.21 | 0.00 | 37.78 | 3.53 |
6479 | 7095 | 4.458989 | TCCGTACGTAGTTTGTAGTGGAAT | 59.541 | 41.667 | 15.21 | 0.00 | 37.78 | 3.01 |
6480 | 7096 | 4.795278 | CCGTACGTAGTTTGTAGTGGAATC | 59.205 | 45.833 | 15.21 | 0.00 | 37.78 | 2.52 |
6481 | 7097 | 5.392380 | CCGTACGTAGTTTGTAGTGGAATCT | 60.392 | 44.000 | 15.21 | 0.00 | 37.78 | 2.40 |
6482 | 7098 | 6.088824 | CGTACGTAGTTTGTAGTGGAATCTT | 58.911 | 40.000 | 7.22 | 0.00 | 37.78 | 2.40 |
6483 | 7099 | 6.583806 | CGTACGTAGTTTGTAGTGGAATCTTT | 59.416 | 38.462 | 7.22 | 0.00 | 37.78 | 2.52 |
6484 | 7100 | 7.750458 | CGTACGTAGTTTGTAGTGGAATCTTTA | 59.250 | 37.037 | 7.22 | 0.00 | 37.78 | 1.85 |
6485 | 7101 | 9.410556 | GTACGTAGTTTGTAGTGGAATCTTTAA | 57.589 | 33.333 | 0.00 | 0.00 | 37.78 | 1.52 |
6486 | 7102 | 8.530269 | ACGTAGTTTGTAGTGGAATCTTTAAG | 57.470 | 34.615 | 0.00 | 0.00 | 37.78 | 1.85 |
6487 | 7103 | 8.362639 | ACGTAGTTTGTAGTGGAATCTTTAAGA | 58.637 | 33.333 | 0.00 | 0.00 | 37.78 | 2.10 |
6488 | 7104 | 9.199982 | CGTAGTTTGTAGTGGAATCTTTAAGAA | 57.800 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
6510 | 7126 | 9.780186 | AAGAAGATTTATATTTAGGAACGGAGG | 57.220 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
6511 | 7127 | 8.376270 | AGAAGATTTATATTTAGGAACGGAGGG | 58.624 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
6512 | 7128 | 7.867160 | AGATTTATATTTAGGAACGGAGGGA | 57.133 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
6513 | 7129 | 7.908453 | AGATTTATATTTAGGAACGGAGGGAG | 58.092 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
6514 | 7130 | 7.513091 | AGATTTATATTTAGGAACGGAGGGAGT | 59.487 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
6515 | 7131 | 8.731591 | ATTTATATTTAGGAACGGAGGGAGTA | 57.268 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
6516 | 7132 | 7.771927 | TTATATTTAGGAACGGAGGGAGTAG | 57.228 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
6517 | 7133 | 3.463048 | TTTAGGAACGGAGGGAGTAGT | 57.537 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
6558 | 7174 | 3.584406 | TGACTGAGTGGTCAAAGATGGAT | 59.416 | 43.478 | 0.00 | 0.00 | 42.35 | 3.41 |
6559 | 7175 | 3.937706 | GACTGAGTGGTCAAAGATGGATG | 59.062 | 47.826 | 0.00 | 0.00 | 36.35 | 3.51 |
6560 | 7176 | 3.584406 | ACTGAGTGGTCAAAGATGGATGA | 59.416 | 43.478 | 0.00 | 0.00 | 30.14 | 2.92 |
6561 | 7177 | 4.190001 | CTGAGTGGTCAAAGATGGATGAG | 58.810 | 47.826 | 0.00 | 0.00 | 30.14 | 2.90 |
6562 | 7178 | 3.584406 | TGAGTGGTCAAAGATGGATGAGT | 59.416 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
6563 | 7179 | 4.777366 | TGAGTGGTCAAAGATGGATGAGTA | 59.223 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
6564 | 7180 | 5.105187 | TGAGTGGTCAAAGATGGATGAGTAG | 60.105 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
6565 | 7181 | 5.026121 | AGTGGTCAAAGATGGATGAGTAGA | 58.974 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
6566 | 7182 | 5.128499 | AGTGGTCAAAGATGGATGAGTAGAG | 59.872 | 44.000 | 0.00 | 0.00 | 0.00 | 2.43 |
6567 | 7183 | 4.141846 | TGGTCAAAGATGGATGAGTAGAGC | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 4.09 |
6568 | 7184 | 4.141846 | GGTCAAAGATGGATGAGTAGAGCA | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 4.26 |
6569 | 7185 | 5.454471 | GGTCAAAGATGGATGAGTAGAGCAT | 60.454 | 44.000 | 0.00 | 0.00 | 0.00 | 3.79 |
6570 | 7186 | 5.466058 | GTCAAAGATGGATGAGTAGAGCATG | 59.534 | 44.000 | 0.00 | 0.00 | 0.00 | 4.06 |
6571 | 7187 | 3.681593 | AGATGGATGAGTAGAGCATGC | 57.318 | 47.619 | 10.51 | 10.51 | 35.04 | 4.06 |
6572 | 7188 | 3.241156 | AGATGGATGAGTAGAGCATGCT | 58.759 | 45.455 | 22.92 | 22.92 | 35.44 | 3.79 |
6573 | 7189 | 2.904697 | TGGATGAGTAGAGCATGCTG | 57.095 | 50.000 | 28.27 | 0.00 | 35.44 | 4.41 |
6574 | 7190 | 1.202615 | TGGATGAGTAGAGCATGCTGC | 60.203 | 52.381 | 28.27 | 16.52 | 45.46 | 5.25 |
6583 | 7199 | 4.298009 | GCATGCTGCTGACTGAGT | 57.702 | 55.556 | 11.37 | 0.00 | 40.96 | 3.41 |
6584 | 7200 | 1.794864 | GCATGCTGCTGACTGAGTG | 59.205 | 57.895 | 11.37 | 0.00 | 40.96 | 3.51 |
6585 | 7201 | 1.645704 | GCATGCTGCTGACTGAGTGG | 61.646 | 60.000 | 11.37 | 0.00 | 40.96 | 4.00 |
6586 | 7202 | 0.321387 | CATGCTGCTGACTGAGTGGT | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
6587 | 7203 | 0.036577 | ATGCTGCTGACTGAGTGGTC | 60.037 | 55.000 | 0.00 | 0.00 | 36.81 | 4.02 |
6588 | 7204 | 1.368950 | GCTGCTGACTGAGTGGTCA | 59.631 | 57.895 | 0.00 | 0.00 | 42.96 | 4.02 |
6589 | 7205 | 0.250038 | GCTGCTGACTGAGTGGTCAA | 60.250 | 55.000 | 0.00 | 0.00 | 44.24 | 3.18 |
6590 | 7206 | 1.811558 | GCTGCTGACTGAGTGGTCAAA | 60.812 | 52.381 | 0.00 | 0.00 | 44.24 | 2.69 |
6591 | 7207 | 2.141517 | CTGCTGACTGAGTGGTCAAAG | 58.858 | 52.381 | 0.00 | 0.00 | 44.24 | 2.77 |
6592 | 7208 | 1.762370 | TGCTGACTGAGTGGTCAAAGA | 59.238 | 47.619 | 0.00 | 0.00 | 44.24 | 2.52 |
6593 | 7209 | 2.369860 | TGCTGACTGAGTGGTCAAAGAT | 59.630 | 45.455 | 0.00 | 0.00 | 44.24 | 2.40 |
6594 | 7210 | 2.740981 | GCTGACTGAGTGGTCAAAGATG | 59.259 | 50.000 | 0.00 | 0.00 | 44.24 | 2.90 |
6595 | 7211 | 3.332919 | CTGACTGAGTGGTCAAAGATGG | 58.667 | 50.000 | 0.00 | 0.00 | 44.24 | 3.51 |
6596 | 7212 | 2.972021 | TGACTGAGTGGTCAAAGATGGA | 59.028 | 45.455 | 0.00 | 0.00 | 42.35 | 3.41 |
6735 | 7351 | 3.771160 | GACGCCACCATCCCTCGT | 61.771 | 66.667 | 0.00 | 0.00 | 35.98 | 4.18 |
6736 | 7352 | 3.310860 | GACGCCACCATCCCTCGTT | 62.311 | 63.158 | 0.00 | 0.00 | 33.21 | 3.85 |
6737 | 7353 | 2.819595 | CGCCACCATCCCTCGTTG | 60.820 | 66.667 | 0.00 | 0.00 | 0.00 | 4.10 |
6804 | 7465 | 1.472878 | TGTACTCTACTCCTGCGCTTG | 59.527 | 52.381 | 9.73 | 0.76 | 0.00 | 4.01 |
6866 | 7530 | 6.144724 | CGAGAGAAAGAGAAAAGTAAGGTGTG | 59.855 | 42.308 | 0.00 | 0.00 | 0.00 | 3.82 |
6895 | 7559 | 4.863131 | GGTCGAGAGAATGATACACGTTTT | 59.137 | 41.667 | 0.00 | 0.00 | 45.01 | 2.43 |
6897 | 7561 | 5.800941 | GTCGAGAGAATGATACACGTTTTCT | 59.199 | 40.000 | 0.00 | 0.00 | 45.01 | 2.52 |
6921 | 7585 | 0.945099 | CTAGCATCAGGAGACGCGTA | 59.055 | 55.000 | 13.97 | 0.00 | 0.00 | 4.42 |
6925 | 7589 | 1.802880 | GCATCAGGAGACGCGTACAAT | 60.803 | 52.381 | 13.97 | 0.00 | 0.00 | 2.71 |
6929 | 7593 | 3.011818 | TCAGGAGACGCGTACAATAAGA | 58.988 | 45.455 | 13.97 | 1.56 | 0.00 | 2.10 |
6930 | 7594 | 3.106672 | CAGGAGACGCGTACAATAAGAC | 58.893 | 50.000 | 13.97 | 0.00 | 0.00 | 3.01 |
6931 | 7595 | 2.107178 | GGAGACGCGTACAATAAGACG | 58.893 | 52.381 | 13.97 | 0.00 | 41.97 | 4.18 |
6932 | 7596 | 2.223112 | GGAGACGCGTACAATAAGACGA | 60.223 | 50.000 | 13.97 | 0.00 | 41.60 | 4.20 |
6933 | 7597 | 3.547613 | GGAGACGCGTACAATAAGACGAT | 60.548 | 47.826 | 13.97 | 0.00 | 41.60 | 3.73 |
6934 | 7598 | 3.360533 | AGACGCGTACAATAAGACGATG | 58.639 | 45.455 | 13.97 | 0.00 | 41.60 | 3.84 |
6935 | 7599 | 3.103738 | GACGCGTACAATAAGACGATGT | 58.896 | 45.455 | 13.97 | 0.00 | 41.60 | 3.06 |
6936 | 7600 | 4.034394 | AGACGCGTACAATAAGACGATGTA | 59.966 | 41.667 | 13.97 | 0.00 | 41.60 | 2.29 |
6937 | 7601 | 4.661125 | ACGCGTACAATAAGACGATGTAA | 58.339 | 39.130 | 11.67 | 0.00 | 41.60 | 2.41 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
56 | 58 | 8.483307 | AAAGAAGAGTAGACACGTGTTAAAAA | 57.517 | 30.769 | 24.26 | 4.00 | 0.00 | 1.94 |
57 | 59 | 9.023967 | GTAAAGAAGAGTAGACACGTGTTAAAA | 57.976 | 33.333 | 24.26 | 5.89 | 0.00 | 1.52 |
58 | 60 | 8.190122 | TGTAAAGAAGAGTAGACACGTGTTAAA | 58.810 | 33.333 | 24.26 | 8.56 | 0.00 | 1.52 |
59 | 61 | 7.706159 | TGTAAAGAAGAGTAGACACGTGTTAA | 58.294 | 34.615 | 24.26 | 11.29 | 0.00 | 2.01 |
132 | 136 | 9.151177 | AGATGTCAAAGGCATATATTGGAAAAT | 57.849 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
135 | 139 | 6.016024 | GCAGATGTCAAAGGCATATATTGGAA | 60.016 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
136 | 140 | 5.474532 | GCAGATGTCAAAGGCATATATTGGA | 59.525 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
173 | 177 | 4.571919 | TCCTGGTGTATAGGAAAACAACG | 58.428 | 43.478 | 0.00 | 0.00 | 41.24 | 4.10 |
288 | 297 | 7.857734 | ATGTACAACCGATATGAAAACATCA | 57.142 | 32.000 | 0.00 | 0.00 | 43.67 | 3.07 |
444 | 456 | 9.612620 | AAACGTTGAAAAATGCAAACAATTTTA | 57.387 | 22.222 | 0.00 | 0.00 | 38.65 | 1.52 |
454 | 466 | 9.994432 | AAAATATTGAAAACGTTGAAAAATGCA | 57.006 | 22.222 | 0.00 | 0.00 | 0.00 | 3.96 |
568 | 583 | 1.219124 | CCCACATACTGCTCAGCGT | 59.781 | 57.895 | 0.00 | 0.00 | 0.00 | 5.07 |
572 | 587 | 1.897423 | CCGACCCACATACTGCTCA | 59.103 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
601 | 616 | 3.086600 | CTCACCTCTGGGGAGCCC | 61.087 | 72.222 | 0.00 | 0.00 | 45.71 | 5.19 |
610 | 625 | 0.036022 | GGAAGCAGCAACTCACCTCT | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
613 | 628 | 1.294659 | CGAGGAAGCAGCAACTCACC | 61.295 | 60.000 | 10.45 | 0.00 | 0.00 | 4.02 |
614 | 629 | 0.319900 | TCGAGGAAGCAGCAACTCAC | 60.320 | 55.000 | 10.45 | 0.00 | 0.00 | 3.51 |
615 | 630 | 0.392706 | TTCGAGGAAGCAGCAACTCA | 59.607 | 50.000 | 10.45 | 0.00 | 0.00 | 3.41 |
691 | 706 | 2.864343 | CAAATCCGACCGCCTAAAGTAG | 59.136 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
692 | 707 | 2.896168 | CAAATCCGACCGCCTAAAGTA | 58.104 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
693 | 708 | 1.734163 | CAAATCCGACCGCCTAAAGT | 58.266 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
694 | 709 | 0.377203 | GCAAATCCGACCGCCTAAAG | 59.623 | 55.000 | 0.00 | 0.00 | 0.00 | 1.85 |
695 | 710 | 0.035820 | AGCAAATCCGACCGCCTAAA | 60.036 | 50.000 | 0.00 | 0.00 | 0.00 | 1.85 |
696 | 711 | 0.461339 | GAGCAAATCCGACCGCCTAA | 60.461 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
697 | 712 | 1.143183 | GAGCAAATCCGACCGCCTA | 59.857 | 57.895 | 0.00 | 0.00 | 0.00 | 3.93 |
698 | 713 | 2.125106 | GAGCAAATCCGACCGCCT | 60.125 | 61.111 | 0.00 | 0.00 | 0.00 | 5.52 |
699 | 714 | 1.582610 | TTTGAGCAAATCCGACCGCC | 61.583 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
721 | 736 | 2.546584 | GGACCGACCGACTAACTTTTGT | 60.547 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
770 | 785 | 1.004560 | CCAGCCTGCTCTTTCGACA | 60.005 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
774 | 789 | 2.753446 | GGCCCAGCCTGCTCTTTC | 60.753 | 66.667 | 0.00 | 0.00 | 46.69 | 2.62 |
863 | 878 | 0.467804 | GGAGAGGGAGATTGAGTGGC | 59.532 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
972 | 988 | 3.195698 | GAAAGCTCGCCGCCGATT | 61.196 | 61.111 | 0.00 | 0.00 | 43.47 | 3.34 |
1226 | 1242 | 6.470278 | GGATGAAGATGATCATACCATGTGA | 58.530 | 40.000 | 8.54 | 0.00 | 40.08 | 3.58 |
1289 | 1305 | 2.271800 | CTCTACTAAAACAGGCAGGCG | 58.728 | 52.381 | 0.00 | 0.00 | 0.00 | 5.52 |
1311 | 1327 | 4.780021 | AGGGAATCAAGCGATCCATATAGT | 59.220 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
1314 | 1330 | 5.026121 | TCTAGGGAATCAAGCGATCCATAT | 58.974 | 41.667 | 0.00 | 0.00 | 0.00 | 1.78 |
1460 | 1478 | 4.160439 | AGAATCTGGAATCGCAAGTCTACA | 59.840 | 41.667 | 0.00 | 0.00 | 39.48 | 2.74 |
1565 | 1585 | 2.302733 | TGAAGCAGAGCAACCATCACTA | 59.697 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
1583 | 1603 | 4.111375 | GACTGCTAGGAAGTCGAATGAA | 57.889 | 45.455 | 0.00 | 0.00 | 35.12 | 2.57 |
1625 | 1646 | 2.375174 | ACAACACCCCTGAATTGAGCTA | 59.625 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
1689 | 1711 | 6.473758 | ACCATGTCTTTAGAACTTTAGACCC | 58.526 | 40.000 | 0.00 | 0.00 | 36.94 | 4.46 |
1722 | 1744 | 2.343101 | GCACACGTGATGCCTTACTTA | 58.657 | 47.619 | 25.01 | 0.00 | 37.08 | 2.24 |
1800 | 1822 | 3.748645 | ACACAGAGACCCACTAGAGAT | 57.251 | 47.619 | 0.00 | 0.00 | 0.00 | 2.75 |
1850 | 1872 | 9.968743 | CTAGAGGCACTAATTTAAAACTTAACG | 57.031 | 33.333 | 0.00 | 0.00 | 41.55 | 3.18 |
1864 | 1886 | 5.047519 | GTCTGGTTAACACTAGAGGCACTAA | 60.048 | 44.000 | 8.10 | 0.00 | 40.95 | 2.24 |
1902 | 1924 | 7.241042 | AGTACTAGCAGATTTTTGGTACAGA | 57.759 | 36.000 | 0.00 | 0.00 | 42.39 | 3.41 |
1919 | 1942 | 6.095160 | ACCTACCAAGATCAAACGAGTACTAG | 59.905 | 42.308 | 0.00 | 0.00 | 0.00 | 2.57 |
1960 | 1983 | 9.212593 | ACCTTATGAAATTACCTGGCATTATTT | 57.787 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2088 | 2114 | 4.202727 | TGGGATTAAGGGACCAACATTTCA | 60.203 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
2118 | 2144 | 9.155975 | GACTGTTCAGATTGTTACATGAGTAAT | 57.844 | 33.333 | 0.00 | 0.00 | 41.86 | 1.89 |
2123 | 2149 | 4.929211 | CCGACTGTTCAGATTGTTACATGA | 59.071 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
2144 | 2170 | 4.444056 | GGTTCACACAACAATTCAATTCCG | 59.556 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2196 | 2222 | 3.689161 | CCTCGCCTTACAAACATTGATCA | 59.311 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
2197 | 2223 | 3.487544 | GCCTCGCCTTACAAACATTGATC | 60.488 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
2225 | 2251 | 1.263217 | CGTCTTGCCTTGCGTTTTAGT | 59.737 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
2240 | 2266 | 0.956633 | TGTGTCTAAGGCGTCGTCTT | 59.043 | 50.000 | 17.35 | 17.35 | 0.00 | 3.01 |
2243 | 2269 | 1.814394 | TGTATGTGTCTAAGGCGTCGT | 59.186 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
2350 | 2376 | 6.809428 | TCCATGGAGATTAGGATAGAGATGT | 58.191 | 40.000 | 11.44 | 0.00 | 0.00 | 3.06 |
2449 | 2475 | 3.501828 | GTGTACATTGTGTGGCAAGATGA | 59.498 | 43.478 | 0.00 | 0.00 | 40.86 | 2.92 |
2450 | 2476 | 3.503363 | AGTGTACATTGTGTGGCAAGATG | 59.497 | 43.478 | 0.00 | 0.00 | 40.86 | 2.90 |
2480 | 2506 | 3.181459 | GGCCAGATTTAGAGAGGAAGGAC | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 3.85 |
2483 | 2509 | 3.708631 | TCTGGCCAGATTTAGAGAGGAAG | 59.291 | 47.826 | 32.00 | 0.66 | 31.41 | 3.46 |
2522 | 2548 | 0.110147 | GAGCTACATCCGACGATCCG | 60.110 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2691 | 2723 | 2.592512 | ACCTCTTCTCTCCTTCCCCATA | 59.407 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2757 | 2789 | 1.007600 | TCCTTCTCCTCTGCATCCAGA | 59.992 | 52.381 | 0.00 | 0.00 | 45.54 | 3.86 |
2758 | 2790 | 1.493861 | TCCTTCTCCTCTGCATCCAG | 58.506 | 55.000 | 0.00 | 0.00 | 40.54 | 3.86 |
2845 | 2901 | 1.073897 | ACCTGCCCTTCACTGCTTC | 59.926 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
2852 | 2908 | 1.376466 | GCTTCTCACCTGCCCTTCA | 59.624 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
2972 | 3033 | 2.704190 | TCTCCTCTCTCACCTTTGGT | 57.296 | 50.000 | 0.00 | 0.00 | 35.62 | 3.67 |
2981 | 3042 | 4.037222 | AGGGATTCCTTTTCTCCTCTCTC | 58.963 | 47.826 | 2.01 | 0.00 | 41.56 | 3.20 |
3006 | 3068 | 1.511318 | CCAAACGTCCAATCCACGCA | 61.511 | 55.000 | 0.00 | 0.00 | 41.10 | 5.24 |
3027 | 3089 | 2.206536 | GGGCAGGAGAGAGGATCGG | 61.207 | 68.421 | 0.00 | 0.00 | 42.67 | 4.18 |
3092 | 3176 | 2.854522 | CCGAGCGGGAAACTTTCAT | 58.145 | 52.632 | 0.00 | 0.00 | 38.47 | 2.57 |
3164 | 3248 | 0.991146 | TTCCTAGGCATGCAAGGTGA | 59.009 | 50.000 | 28.05 | 19.09 | 0.00 | 4.02 |
3272 | 3356 | 4.968259 | TCTAAGGCGTATGTAATGGCAAT | 58.032 | 39.130 | 0.00 | 0.00 | 42.10 | 3.56 |
3273 | 3357 | 4.409718 | TCTAAGGCGTATGTAATGGCAA | 57.590 | 40.909 | 0.00 | 0.00 | 42.10 | 4.52 |
3274 | 3358 | 4.409718 | TTCTAAGGCGTATGTAATGGCA | 57.590 | 40.909 | 0.00 | 0.00 | 42.10 | 4.92 |
3275 | 3359 | 4.573201 | TGTTTCTAAGGCGTATGTAATGGC | 59.427 | 41.667 | 0.00 | 0.00 | 39.96 | 4.40 |
3277 | 3361 | 7.011950 | TCCATTGTTTCTAAGGCGTATGTAATG | 59.988 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
3278 | 3362 | 7.051623 | TCCATTGTTTCTAAGGCGTATGTAAT | 58.948 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
3284 | 3368 | 4.196193 | CCATCCATTGTTTCTAAGGCGTA | 58.804 | 43.478 | 0.00 | 0.00 | 0.00 | 4.42 |
3293 | 3377 | 5.796424 | AAGGATATGCCATCCATTGTTTC | 57.204 | 39.130 | 14.93 | 0.00 | 40.61 | 2.78 |
3334 | 3418 | 1.208535 | CCAAAATGGCATGCATCACCT | 59.791 | 47.619 | 21.36 | 0.00 | 0.00 | 4.00 |
3337 | 3421 | 3.243941 | GCTATCCAAAATGGCATGCATCA | 60.244 | 43.478 | 21.36 | 9.76 | 37.47 | 3.07 |
3425 | 3509 | 7.345653 | ACTCTGAAATACCTCCACAGAATATCA | 59.654 | 37.037 | 0.00 | 0.00 | 37.20 | 2.15 |
3595 | 3681 | 0.973632 | TGTGGCTGACCGTGTTCTAT | 59.026 | 50.000 | 0.00 | 0.00 | 39.70 | 1.98 |
3740 | 3850 | 1.228124 | TGTTCTTGCGTTGGGGAGG | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 4.30 |
3824 | 3939 | 0.178975 | TTGATGGGTTTTGGGCGACT | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3920 | 4157 | 5.009010 | GCTGTGATCCTTCTTTCAGTTTTCA | 59.991 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3921 | 4158 | 5.009010 | TGCTGTGATCCTTCTTTCAGTTTTC | 59.991 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3943 | 4180 | 5.804639 | ACCATCCTTTATTTTCCCTTTTGC | 58.195 | 37.500 | 0.00 | 0.00 | 0.00 | 3.68 |
4010 | 4247 | 2.096980 | CGAGTCCAGCGAGTATGTGTAA | 59.903 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
4102 | 4342 | 1.492599 | GAAGGATGAAGGAGGGGAAGG | 59.507 | 57.143 | 0.00 | 0.00 | 0.00 | 3.46 |
4122 | 4362 | 2.159653 | GGCACAGATAGTTCAACTTGCG | 60.160 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4149 | 4414 | 0.240945 | CGTGGGTGCTGATTTTGGTC | 59.759 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4190 | 4456 | 0.662619 | CGATGTAATGCCGCCACAAT | 59.337 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
4207 | 4473 | 1.614903 | ACCGTTGACACTATGAACCGA | 59.385 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
4215 | 4481 | 4.525487 | ACCTTCTATTCACCGTTGACACTA | 59.475 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
4248 | 4514 | 4.845580 | ATGGCCCTCAAGCTCGCG | 62.846 | 66.667 | 0.00 | 0.00 | 0.00 | 5.87 |
4259 | 4525 | 1.885871 | GACTGTTTCAGCATGGCCC | 59.114 | 57.895 | 0.00 | 0.00 | 34.37 | 5.80 |
4297 | 4563 | 1.540267 | GCAGAGTGTAGAAGTCGTCCA | 59.460 | 52.381 | 0.00 | 0.00 | 33.01 | 4.02 |
4305 | 4571 | 3.327757 | ACAAGATTGGGCAGAGTGTAGAA | 59.672 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
4353 | 4619 | 0.323816 | AGACATCGTCTGCTCCTCCA | 60.324 | 55.000 | 0.00 | 0.00 | 41.76 | 3.86 |
4362 | 4628 | 1.746220 | GGCAGAGTGTAGACATCGTCT | 59.254 | 52.381 | 1.75 | 1.75 | 45.54 | 4.18 |
4368 | 4634 | 2.497675 | GAGATTGGGCAGAGTGTAGACA | 59.502 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4472 | 4738 | 3.680786 | CCGGAGACTGTGGCGTCA | 61.681 | 66.667 | 0.00 | 0.00 | 36.38 | 4.35 |
4646 | 4917 | 2.940994 | TCCAGTTTTCGGTTCATGGA | 57.059 | 45.000 | 0.00 | 0.00 | 34.54 | 3.41 |
4647 | 4918 | 2.095853 | CGATCCAGTTTTCGGTTCATGG | 59.904 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
4649 | 4920 | 3.056107 | TCTCGATCCAGTTTTCGGTTCAT | 60.056 | 43.478 | 0.00 | 0.00 | 36.08 | 2.57 |
4726 | 4999 | 5.591472 | CCTTGATGCAATATCTCAGTCCAAA | 59.409 | 40.000 | 0.00 | 0.00 | 0.00 | 3.28 |
4792 | 5065 | 4.339247 | GGATGTAAGGCTACGTAGGTGTAA | 59.661 | 45.833 | 23.47 | 0.00 | 0.00 | 2.41 |
4871 | 5154 | 0.107312 | CGAGGTAGGAGAACGGAGGA | 60.107 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
4956 | 5259 | 1.280421 | AGGAGATTCTGGCACAACCTC | 59.720 | 52.381 | 0.00 | 0.00 | 38.70 | 3.85 |
4967 | 5270 | 4.038162 | GGACACTATGCGTTAGGAGATTCT | 59.962 | 45.833 | 0.00 | 0.00 | 31.68 | 2.40 |
4969 | 5272 | 3.243434 | CGGACACTATGCGTTAGGAGATT | 60.243 | 47.826 | 0.00 | 0.00 | 37.38 | 2.40 |
4983 | 5286 | 1.068125 | CATGTGAACGACCGGACACTA | 60.068 | 52.381 | 9.46 | 2.52 | 34.81 | 2.74 |
5039 | 5342 | 1.693606 | TGCTATCATCGGCCATGAAGA | 59.306 | 47.619 | 17.97 | 5.21 | 45.06 | 2.87 |
5131 | 5437 | 1.465354 | GCAGAAATCAAGCACTCGCAG | 60.465 | 52.381 | 0.00 | 0.00 | 42.27 | 5.18 |
5135 | 5441 | 2.072298 | ACGAGCAGAAATCAAGCACTC | 58.928 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
5192 | 5498 | 7.247019 | GCTATTTTCTGAGAGGAACAAATCAC | 58.753 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
5206 | 5512 | 3.513912 | TGAAGAGGACCGCTATTTTCTGA | 59.486 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
5389 | 5695 | 3.415457 | TTGTCACTGTATGGCATGTCA | 57.585 | 42.857 | 10.98 | 0.60 | 44.20 | 3.58 |
5395 | 5701 | 6.806739 | GGATTTACTTTTTGTCACTGTATGGC | 59.193 | 38.462 | 0.00 | 0.00 | 0.00 | 4.40 |
5400 | 5706 | 6.323739 | ACATGGGATTTACTTTTTGTCACTGT | 59.676 | 34.615 | 0.00 | 0.00 | 0.00 | 3.55 |
5429 | 5735 | 1.754380 | CTTGGTCACTCGGTGGGTGA | 61.754 | 60.000 | 0.00 | 0.00 | 40.78 | 4.02 |
5430 | 5736 | 1.301716 | CTTGGTCACTCGGTGGGTG | 60.302 | 63.158 | 4.52 | 0.00 | 33.87 | 4.61 |
5471 | 5792 | 9.906660 | TCACAATCAATTAAGGTGTACAATTTC | 57.093 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
5504 | 5825 | 4.479796 | TCACTCTAAGCTACCTAGGGGTTA | 59.520 | 45.833 | 14.81 | 11.10 | 44.73 | 2.85 |
5636 | 6249 | 4.202101 | TGTTGACCAAACATGGACATGAAC | 60.202 | 41.667 | 18.38 | 10.52 | 43.96 | 3.18 |
5682 | 6295 | 3.492421 | TTAACCGGTCGAGTATGACAC | 57.508 | 47.619 | 8.04 | 0.00 | 40.72 | 3.67 |
5715 | 6328 | 4.091365 | CGAACAGATGCATCGAGTGTTTTA | 59.909 | 41.667 | 25.07 | 0.00 | 38.82 | 1.52 |
5740 | 6354 | 8.911965 | ACTACTTTACTAGTTTCCATAGTAGCC | 58.088 | 37.037 | 15.39 | 0.00 | 38.10 | 3.93 |
5954 | 6568 | 0.108138 | ATCTCACGGCCGAGAAAAGG | 60.108 | 55.000 | 35.90 | 17.62 | 44.92 | 3.11 |
6202 | 6816 | 1.025812 | AATGTTCGGCGTTCCAAACA | 58.974 | 45.000 | 12.50 | 12.50 | 0.00 | 2.83 |
6281 | 6897 | 4.356289 | GAAAACACGCAACAACATAGGTT | 58.644 | 39.130 | 0.00 | 0.00 | 37.87 | 3.50 |
6283 | 6899 | 3.305110 | GGAAAACACGCAACAACATAGG | 58.695 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
6286 | 6902 | 1.478510 | TGGGAAAACACGCAACAACAT | 59.521 | 42.857 | 0.00 | 0.00 | 0.00 | 2.71 |
6350 | 6966 | 1.486211 | AGGAACGGAGGGAGTACATG | 58.514 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
6351 | 6967 | 3.393426 | TTAGGAACGGAGGGAGTACAT | 57.607 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
6352 | 6968 | 2.905415 | TTAGGAACGGAGGGAGTACA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
6353 | 6969 | 7.232330 | ACTTATATTTAGGAACGGAGGGAGTAC | 59.768 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
6354 | 6970 | 7.300658 | ACTTATATTTAGGAACGGAGGGAGTA | 58.699 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
6355 | 6971 | 6.141790 | ACTTATATTTAGGAACGGAGGGAGT | 58.858 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
6356 | 6972 | 6.494146 | AGACTTATATTTAGGAACGGAGGGAG | 59.506 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
6357 | 6973 | 6.379579 | AGACTTATATTTAGGAACGGAGGGA | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
6358 | 6974 | 6.667558 | AGACTTATATTTAGGAACGGAGGG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
6359 | 6975 | 8.959705 | AAAAGACTTATATTTAGGAACGGAGG | 57.040 | 34.615 | 0.00 | 0.00 | 0.00 | 4.30 |
6375 | 6991 | 9.383519 | CCATAGTGCAATCTCTAAAAAGACTTA | 57.616 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
6376 | 6992 | 8.103305 | TCCATAGTGCAATCTCTAAAAAGACTT | 58.897 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
6377 | 6993 | 7.550906 | GTCCATAGTGCAATCTCTAAAAAGACT | 59.449 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
6378 | 6994 | 7.550906 | AGTCCATAGTGCAATCTCTAAAAAGAC | 59.449 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
6379 | 6995 | 7.624549 | AGTCCATAGTGCAATCTCTAAAAAGA | 58.375 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
6380 | 6996 | 7.856145 | AGTCCATAGTGCAATCTCTAAAAAG | 57.144 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
6381 | 6997 | 8.318412 | TGTAGTCCATAGTGCAATCTCTAAAAA | 58.682 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
6382 | 6998 | 7.847096 | TGTAGTCCATAGTGCAATCTCTAAAA | 58.153 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
6383 | 6999 | 7.418337 | TGTAGTCCATAGTGCAATCTCTAAA | 57.582 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
6384 | 7000 | 7.603180 | ATGTAGTCCATAGTGCAATCTCTAA | 57.397 | 36.000 | 0.00 | 0.00 | 29.82 | 2.10 |
6385 | 7001 | 7.094762 | CGTATGTAGTCCATAGTGCAATCTCTA | 60.095 | 40.741 | 0.00 | 0.00 | 36.71 | 2.43 |
6386 | 7002 | 6.294231 | CGTATGTAGTCCATAGTGCAATCTCT | 60.294 | 42.308 | 0.00 | 0.00 | 36.71 | 3.10 |
6387 | 7003 | 5.859114 | CGTATGTAGTCCATAGTGCAATCTC | 59.141 | 44.000 | 0.00 | 0.00 | 36.71 | 2.75 |
6388 | 7004 | 5.279006 | CCGTATGTAGTCCATAGTGCAATCT | 60.279 | 44.000 | 0.00 | 0.00 | 36.71 | 2.40 |
6389 | 7005 | 4.923871 | CCGTATGTAGTCCATAGTGCAATC | 59.076 | 45.833 | 0.00 | 0.00 | 36.71 | 2.67 |
6390 | 7006 | 4.587262 | TCCGTATGTAGTCCATAGTGCAAT | 59.413 | 41.667 | 0.00 | 0.00 | 36.71 | 3.56 |
6391 | 7007 | 3.955551 | TCCGTATGTAGTCCATAGTGCAA | 59.044 | 43.478 | 0.00 | 0.00 | 36.71 | 4.08 |
6392 | 7008 | 3.558033 | TCCGTATGTAGTCCATAGTGCA | 58.442 | 45.455 | 0.00 | 0.00 | 36.71 | 4.57 |
6393 | 7009 | 3.612004 | GCTCCGTATGTAGTCCATAGTGC | 60.612 | 52.174 | 0.00 | 0.00 | 36.71 | 4.40 |
6394 | 7010 | 3.568430 | TGCTCCGTATGTAGTCCATAGTG | 59.432 | 47.826 | 0.00 | 0.00 | 36.71 | 2.74 |
6395 | 7011 | 3.828921 | TGCTCCGTATGTAGTCCATAGT | 58.171 | 45.455 | 0.00 | 0.00 | 36.71 | 2.12 |
6396 | 7012 | 4.848562 | TTGCTCCGTATGTAGTCCATAG | 57.151 | 45.455 | 0.00 | 0.00 | 36.71 | 2.23 |
6397 | 7013 | 5.601583 | TTTTGCTCCGTATGTAGTCCATA | 57.398 | 39.130 | 0.00 | 0.00 | 34.86 | 2.74 |
6398 | 7014 | 4.481368 | TTTTGCTCCGTATGTAGTCCAT | 57.519 | 40.909 | 0.00 | 0.00 | 37.58 | 3.41 |
6399 | 7015 | 3.965379 | TTTTGCTCCGTATGTAGTCCA | 57.035 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
6400 | 7016 | 4.439057 | TCATTTTGCTCCGTATGTAGTCC | 58.561 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
6401 | 7017 | 5.005779 | CACTCATTTTGCTCCGTATGTAGTC | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
6402 | 7018 | 4.870426 | CACTCATTTTGCTCCGTATGTAGT | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
6403 | 7019 | 5.109210 | TCACTCATTTTGCTCCGTATGTAG | 58.891 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
6404 | 7020 | 5.079689 | TCACTCATTTTGCTCCGTATGTA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
6405 | 7021 | 3.937814 | TCACTCATTTTGCTCCGTATGT | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
6406 | 7022 | 4.944962 | TTCACTCATTTTGCTCCGTATG | 57.055 | 40.909 | 0.00 | 0.00 | 0.00 | 2.39 |
6407 | 7023 | 5.431765 | AGATTCACTCATTTTGCTCCGTAT | 58.568 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
6408 | 7024 | 4.832248 | AGATTCACTCATTTTGCTCCGTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
6409 | 7025 | 3.679389 | AGATTCACTCATTTTGCTCCGT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
6410 | 7026 | 5.998454 | ATAGATTCACTCATTTTGCTCCG | 57.002 | 39.130 | 0.00 | 0.00 | 0.00 | 4.63 |
6411 | 7027 | 9.282569 | AGAATATAGATTCACTCATTTTGCTCC | 57.717 | 33.333 | 12.39 | 0.00 | 43.51 | 4.70 |
6442 | 7058 | 9.875691 | AACTACGTACGGATGTATATAGACATA | 57.124 | 33.333 | 21.06 | 0.00 | 40.18 | 2.29 |
6443 | 7059 | 8.783833 | AACTACGTACGGATGTATATAGACAT | 57.216 | 34.615 | 21.06 | 12.70 | 42.82 | 3.06 |
6444 | 7060 | 8.498358 | CAAACTACGTACGGATGTATATAGACA | 58.502 | 37.037 | 21.06 | 2.07 | 32.11 | 3.41 |
6445 | 7061 | 8.499162 | ACAAACTACGTACGGATGTATATAGAC | 58.501 | 37.037 | 21.06 | 0.00 | 32.11 | 2.59 |
6446 | 7062 | 8.607441 | ACAAACTACGTACGGATGTATATAGA | 57.393 | 34.615 | 21.06 | 0.00 | 32.11 | 1.98 |
6447 | 7063 | 9.964253 | CTACAAACTACGTACGGATGTATATAG | 57.036 | 37.037 | 21.06 | 11.46 | 32.11 | 1.31 |
6448 | 7064 | 9.489084 | ACTACAAACTACGTACGGATGTATATA | 57.511 | 33.333 | 21.06 | 0.00 | 32.11 | 0.86 |
6449 | 7065 | 8.285394 | CACTACAAACTACGTACGGATGTATAT | 58.715 | 37.037 | 21.06 | 5.66 | 32.11 | 0.86 |
6450 | 7066 | 7.254761 | CCACTACAAACTACGTACGGATGTATA | 60.255 | 40.741 | 21.06 | 0.30 | 32.11 | 1.47 |
6451 | 7067 | 6.458751 | CCACTACAAACTACGTACGGATGTAT | 60.459 | 42.308 | 21.06 | 4.88 | 32.11 | 2.29 |
6452 | 7068 | 5.163764 | CCACTACAAACTACGTACGGATGTA | 60.164 | 44.000 | 21.06 | 15.28 | 0.00 | 2.29 |
6453 | 7069 | 4.379813 | CCACTACAAACTACGTACGGATGT | 60.380 | 45.833 | 21.06 | 14.94 | 0.00 | 3.06 |
6454 | 7070 | 4.100529 | CCACTACAAACTACGTACGGATG | 58.899 | 47.826 | 21.06 | 9.21 | 0.00 | 3.51 |
6455 | 7071 | 4.009675 | TCCACTACAAACTACGTACGGAT | 58.990 | 43.478 | 21.06 | 1.34 | 0.00 | 4.18 |
6456 | 7072 | 3.407698 | TCCACTACAAACTACGTACGGA | 58.592 | 45.455 | 21.06 | 10.81 | 0.00 | 4.69 |
6457 | 7073 | 3.829886 | TCCACTACAAACTACGTACGG | 57.170 | 47.619 | 21.06 | 5.00 | 0.00 | 4.02 |
6458 | 7074 | 5.634896 | AGATTCCACTACAAACTACGTACG | 58.365 | 41.667 | 15.01 | 15.01 | 0.00 | 3.67 |
6459 | 7075 | 7.880059 | AAAGATTCCACTACAAACTACGTAC | 57.120 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
6460 | 7076 | 9.630098 | CTTAAAGATTCCACTACAAACTACGTA | 57.370 | 33.333 | 0.00 | 0.00 | 0.00 | 3.57 |
6461 | 7077 | 8.362639 | TCTTAAAGATTCCACTACAAACTACGT | 58.637 | 33.333 | 0.00 | 0.00 | 0.00 | 3.57 |
6462 | 7078 | 8.752766 | TCTTAAAGATTCCACTACAAACTACG | 57.247 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
6484 | 7100 | 9.780186 | CCTCCGTTCCTAAATATAAATCTTCTT | 57.220 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
6485 | 7101 | 8.376270 | CCCTCCGTTCCTAAATATAAATCTTCT | 58.624 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
6486 | 7102 | 8.373220 | TCCCTCCGTTCCTAAATATAAATCTTC | 58.627 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
6487 | 7103 | 8.271398 | TCCCTCCGTTCCTAAATATAAATCTT | 57.729 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
6488 | 7104 | 7.513091 | ACTCCCTCCGTTCCTAAATATAAATCT | 59.487 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
6489 | 7105 | 7.677892 | ACTCCCTCCGTTCCTAAATATAAATC | 58.322 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
6490 | 7106 | 7.628501 | ACTCCCTCCGTTCCTAAATATAAAT | 57.371 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
6491 | 7107 | 7.786464 | ACTACTCCCTCCGTTCCTAAATATAAA | 59.214 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
6492 | 7108 | 7.300658 | ACTACTCCCTCCGTTCCTAAATATAA | 58.699 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
6493 | 7109 | 6.856757 | ACTACTCCCTCCGTTCCTAAATATA | 58.143 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
6494 | 7110 | 5.713807 | ACTACTCCCTCCGTTCCTAAATAT | 58.286 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
6495 | 7111 | 5.134725 | ACTACTCCCTCCGTTCCTAAATA | 57.865 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
6496 | 7112 | 3.959449 | GACTACTCCCTCCGTTCCTAAAT | 59.041 | 47.826 | 0.00 | 0.00 | 0.00 | 1.40 |
6497 | 7113 | 3.245371 | TGACTACTCCCTCCGTTCCTAAA | 60.245 | 47.826 | 0.00 | 0.00 | 0.00 | 1.85 |
6498 | 7114 | 2.309755 | TGACTACTCCCTCCGTTCCTAA | 59.690 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
6499 | 7115 | 1.918262 | TGACTACTCCCTCCGTTCCTA | 59.082 | 52.381 | 0.00 | 0.00 | 0.00 | 2.94 |
6500 | 7116 | 0.702902 | TGACTACTCCCTCCGTTCCT | 59.297 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
6501 | 7117 | 1.409427 | CATGACTACTCCCTCCGTTCC | 59.591 | 57.143 | 0.00 | 0.00 | 0.00 | 3.62 |
6502 | 7118 | 2.100989 | ACATGACTACTCCCTCCGTTC | 58.899 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
6503 | 7119 | 2.233305 | ACATGACTACTCCCTCCGTT | 57.767 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
6504 | 7120 | 2.241685 | AGTACATGACTACTCCCTCCGT | 59.758 | 50.000 | 0.00 | 0.00 | 36.27 | 4.69 |
6505 | 7121 | 2.619177 | CAGTACATGACTACTCCCTCCG | 59.381 | 54.545 | 0.00 | 0.00 | 35.64 | 4.63 |
6506 | 7122 | 2.959707 | CCAGTACATGACTACTCCCTCC | 59.040 | 54.545 | 0.00 | 0.00 | 35.64 | 4.30 |
6507 | 7123 | 2.362717 | GCCAGTACATGACTACTCCCTC | 59.637 | 54.545 | 0.00 | 0.00 | 35.64 | 4.30 |
6508 | 7124 | 2.292257 | TGCCAGTACATGACTACTCCCT | 60.292 | 50.000 | 0.00 | 0.00 | 35.64 | 4.20 |
6509 | 7125 | 2.108168 | TGCCAGTACATGACTACTCCC | 58.892 | 52.381 | 0.00 | 0.00 | 35.64 | 4.30 |
6567 | 7183 | 0.321387 | ACCACTCAGTCAGCAGCATG | 60.321 | 55.000 | 0.00 | 0.00 | 40.87 | 4.06 |
6568 | 7184 | 0.036577 | GACCACTCAGTCAGCAGCAT | 60.037 | 55.000 | 0.00 | 0.00 | 36.73 | 3.79 |
6569 | 7185 | 1.368950 | GACCACTCAGTCAGCAGCA | 59.631 | 57.895 | 0.00 | 0.00 | 36.73 | 4.41 |
6570 | 7186 | 0.250038 | TTGACCACTCAGTCAGCAGC | 60.250 | 55.000 | 0.00 | 0.00 | 46.90 | 5.25 |
6571 | 7187 | 2.141517 | CTTTGACCACTCAGTCAGCAG | 58.858 | 52.381 | 0.00 | 0.00 | 46.90 | 4.24 |
6572 | 7188 | 1.762370 | TCTTTGACCACTCAGTCAGCA | 59.238 | 47.619 | 0.00 | 0.00 | 46.90 | 4.41 |
6573 | 7189 | 2.533266 | TCTTTGACCACTCAGTCAGC | 57.467 | 50.000 | 0.00 | 0.00 | 46.90 | 4.26 |
6574 | 7190 | 3.007290 | TCCATCTTTGACCACTCAGTCAG | 59.993 | 47.826 | 0.00 | 0.00 | 46.90 | 3.51 |
6575 | 7191 | 2.972021 | TCCATCTTTGACCACTCAGTCA | 59.028 | 45.455 | 0.00 | 0.00 | 44.89 | 3.41 |
6576 | 7192 | 3.685139 | TCCATCTTTGACCACTCAGTC | 57.315 | 47.619 | 0.00 | 0.00 | 37.28 | 3.51 |
6577 | 7193 | 3.584406 | TCATCCATCTTTGACCACTCAGT | 59.416 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
6578 | 7194 | 4.190001 | CTCATCCATCTTTGACCACTCAG | 58.810 | 47.826 | 0.00 | 0.00 | 0.00 | 3.35 |
6579 | 7195 | 3.584406 | ACTCATCCATCTTTGACCACTCA | 59.416 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
6580 | 7196 | 4.213564 | ACTCATCCATCTTTGACCACTC | 57.786 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
6581 | 7197 | 5.026121 | TCTACTCATCCATCTTTGACCACT | 58.974 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
6582 | 7198 | 5.344743 | TCTACTCATCCATCTTTGACCAC | 57.655 | 43.478 | 0.00 | 0.00 | 0.00 | 4.16 |
6583 | 7199 | 4.141846 | GCTCTACTCATCCATCTTTGACCA | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
6584 | 7200 | 4.376146 | GCTCTACTCATCCATCTTTGACC | 58.624 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
6585 | 7201 | 4.047822 | CGCTCTACTCATCCATCTTTGAC | 58.952 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
6586 | 7202 | 3.491619 | GCGCTCTACTCATCCATCTTTGA | 60.492 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
6587 | 7203 | 2.799412 | GCGCTCTACTCATCCATCTTTG | 59.201 | 50.000 | 0.00 | 0.00 | 0.00 | 2.77 |
6588 | 7204 | 2.432146 | TGCGCTCTACTCATCCATCTTT | 59.568 | 45.455 | 9.73 | 0.00 | 0.00 | 2.52 |
6589 | 7205 | 2.034878 | TGCGCTCTACTCATCCATCTT | 58.965 | 47.619 | 9.73 | 0.00 | 0.00 | 2.40 |
6590 | 7206 | 1.697284 | TGCGCTCTACTCATCCATCT | 58.303 | 50.000 | 9.73 | 0.00 | 0.00 | 2.90 |
6591 | 7207 | 2.335752 | CATGCGCTCTACTCATCCATC | 58.664 | 52.381 | 9.73 | 0.00 | 0.00 | 3.51 |
6592 | 7208 | 1.001746 | CCATGCGCTCTACTCATCCAT | 59.998 | 52.381 | 9.73 | 0.00 | 0.00 | 3.41 |
6593 | 7209 | 0.390492 | CCATGCGCTCTACTCATCCA | 59.610 | 55.000 | 9.73 | 0.00 | 0.00 | 3.41 |
6594 | 7210 | 0.390860 | ACCATGCGCTCTACTCATCC | 59.609 | 55.000 | 9.73 | 0.00 | 0.00 | 3.51 |
6595 | 7211 | 2.231215 | AACCATGCGCTCTACTCATC | 57.769 | 50.000 | 9.73 | 0.00 | 0.00 | 2.92 |
6596 | 7212 | 2.283298 | CAAACCATGCGCTCTACTCAT | 58.717 | 47.619 | 9.73 | 0.00 | 0.00 | 2.90 |
6735 | 7351 | 2.267426 | CACAGACAGACACACGAACAA | 58.733 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
6736 | 7352 | 1.203758 | ACACAGACAGACACACGAACA | 59.796 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
6737 | 7353 | 1.922570 | ACACAGACAGACACACGAAC | 58.077 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
6866 | 7530 | 0.895530 | TCATTCTCTCGACCCACACC | 59.104 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
6895 | 7559 | 2.692557 | GTCTCCTGATGCTAGCAGAAGA | 59.307 | 50.000 | 23.89 | 16.30 | 35.39 | 2.87 |
6897 | 7561 | 1.406898 | CGTCTCCTGATGCTAGCAGAA | 59.593 | 52.381 | 23.89 | 12.46 | 35.39 | 3.02 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.