Multiple sequence alignment - TraesCS7D01G297400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G297400 chr7D 100.000 6938 0 0 1 6938 376069192 376062255 0.000000e+00 12813.0
1 TraesCS7D01G297400 chr7D 81.545 699 94 15 2597 3270 66827409 66826721 1.700000e-150 544.0
2 TraesCS7D01G297400 chr7D 96.364 165 6 0 6352 6516 296507680 296507844 8.870000e-69 272.0
3 TraesCS7D01G297400 chr7D 89.216 102 10 1 2224 2324 533906529 533906630 7.310000e-25 126.0
4 TraesCS7D01G297400 chr7D 100.000 41 0 0 6528 6568 376062626 376062586 7.460000e-10 76.8
5 TraesCS7D01G297400 chr7D 100.000 41 0 0 6567 6607 376062665 376062625 7.460000e-10 76.8
6 TraesCS7D01G297400 chr7A 93.411 3096 142 16 780 3854 422655707 422652653 0.000000e+00 4530.0
7 TraesCS7D01G297400 chr7A 92.038 1683 92 13 3856 5513 422652529 422650864 0.000000e+00 2327.0
8 TraesCS7D01G297400 chr7A 94.021 853 40 6 5512 6358 422650575 422649728 0.000000e+00 1282.0
9 TraesCS7D01G297400 chr7A 88.663 688 53 18 1 672 422656443 422655765 0.000000e+00 815.0
10 TraesCS7D01G297400 chr7A 98.058 206 1 2 6567 6772 422649726 422649524 8.560000e-94 355.0
11 TraesCS7D01G297400 chr7A 94.578 166 6 1 6767 6929 422649484 422649319 3.210000e-63 254.0
12 TraesCS7D01G297400 chr7A 87.255 102 12 1 2224 2324 613633951 613634052 1.580000e-21 115.0
13 TraesCS7D01G297400 chr7A 100.000 50 0 0 6519 6568 422649735 422649686 7.410000e-15 93.5
14 TraesCS7D01G297400 chr7B 93.949 2859 139 14 3528 6358 371028813 371025961 0.000000e+00 4290.0
15 TraesCS7D01G297400 chr7B 94.743 2739 114 15 751 3483 371031524 371028810 0.000000e+00 4233.0
16 TraesCS7D01G297400 chr7B 96.618 207 4 2 6567 6772 371025959 371025755 2.400000e-89 340.0
17 TraesCS7D01G297400 chr7B 93.103 174 11 1 6355 6528 626602505 626602333 3.210000e-63 254.0
18 TraesCS7D01G297400 chr7B 85.816 141 17 3 5204 5342 479997147 479997008 5.610000e-31 147.0
19 TraesCS7D01G297400 chr7B 100.000 49 0 0 6519 6567 371025968 371025920 2.660000e-14 91.6
20 TraesCS7D01G297400 chr6D 80.483 953 126 38 2335 3271 186783238 186782330 0.000000e+00 675.0
21 TraesCS7D01G297400 chr6D 95.506 178 5 3 6341 6517 423084148 423084323 1.470000e-71 281.0
22 TraesCS7D01G297400 chr3B 81.969 782 109 21 3571 4332 133427447 133428216 9.820000e-178 634.0
23 TraesCS7D01G297400 chr5A 86.023 601 64 16 2334 2918 172464918 172465514 1.640000e-175 627.0
24 TraesCS7D01G297400 chr5A 83.361 601 80 17 2334 2918 172582617 172583213 7.920000e-149 538.0
25 TraesCS7D01G297400 chr5A 88.889 315 27 5 2334 2641 172509225 172509538 1.410000e-101 381.0
26 TraesCS7D01G297400 chr5A 76.115 381 52 21 3764 4135 366765998 366765648 5.570000e-36 163.0
27 TraesCS7D01G297400 chr5D 82.874 689 93 13 2597 3270 299422183 299422861 4.630000e-166 595.0
28 TraesCS7D01G297400 chr5D 89.206 315 25 6 2485 2791 137055348 137055035 1.090000e-102 385.0
29 TraesCS7D01G297400 chr5D 75.926 378 58 20 3764 4135 277637482 277637132 5.570000e-36 163.0
30 TraesCS7D01G297400 chr5D 78.571 238 38 7 3571 3797 389518337 389518572 2.020000e-30 145.0
31 TraesCS7D01G297400 chr2D 83.283 664 67 29 2490 3137 416403640 416404275 7.810000e-159 571.0
32 TraesCS7D01G297400 chr2D 94.643 168 8 1 6350 6516 87407358 87407525 6.900000e-65 259.0
33 TraesCS7D01G297400 chr2D 94.083 169 10 0 6350 6518 81004752 81004920 2.480000e-64 257.0
34 TraesCS7D01G297400 chr1A 78.288 958 138 37 4607 5536 36163380 36164295 2.830000e-153 553.0
35 TraesCS7D01G297400 chr1A 92.275 233 18 0 2335 2567 162990717 162990485 1.440000e-86 331.0
36 TraesCS7D01G297400 chr2A 82.519 675 72 26 2490 3143 582640545 582641194 1.020000e-152 551.0
37 TraesCS7D01G297400 chr2A 77.503 809 109 32 3572 4340 718606094 718605319 1.080000e-112 418.0
38 TraesCS7D01G297400 chr6A 81.636 697 93 14 2600 3271 39499606 39498920 4.730000e-151 545.0
39 TraesCS7D01G297400 chr5B 84.007 594 57 25 2334 2917 185723739 185723174 2.850000e-148 536.0
40 TraesCS7D01G297400 chr5B 91.351 185 12 4 6341 6522 45271428 45271611 4.150000e-62 250.0
41 TraesCS7D01G297400 chr5B 76.842 190 35 5 4151 4340 315864284 315864104 1.590000e-16 99.0
42 TraesCS7D01G297400 chr1B 80.876 685 113 12 2597 3271 132063964 132063288 2.220000e-144 523.0
43 TraesCS7D01G297400 chr4B 92.275 233 18 0 2335 2567 127102239 127102007 1.440000e-86 331.0
44 TraesCS7D01G297400 chr4B 92.275 233 18 0 2335 2567 240104558 240104790 1.440000e-86 331.0
45 TraesCS7D01G297400 chr4A 94.706 170 8 1 6352 6521 517406468 517406636 5.340000e-66 263.0
46 TraesCS7D01G297400 chr1D 95.706 163 7 0 6355 6517 338937373 338937211 5.340000e-66 263.0
47 TraesCS7D01G297400 chr1D 92.308 182 12 2 6336 6516 463381886 463382066 2.480000e-64 257.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G297400 chr7D 376062255 376069192 6937 True 12813.00 12813 100.000000 1 6938 1 chr7D.!!$R2 6937
1 TraesCS7D01G297400 chr7D 66826721 66827409 688 True 544.00 544 81.545000 2597 3270 1 chr7D.!!$R1 673
2 TraesCS7D01G297400 chr7A 422649319 422656443 7124 True 1379.50 4530 94.395571 1 6929 7 chr7A.!!$R1 6928
3 TraesCS7D01G297400 chr7B 371025755 371031524 5769 True 2238.65 4290 96.327500 751 6772 4 chr7B.!!$R3 6021
4 TraesCS7D01G297400 chr6D 186782330 186783238 908 True 675.00 675 80.483000 2335 3271 1 chr6D.!!$R1 936
5 TraesCS7D01G297400 chr3B 133427447 133428216 769 False 634.00 634 81.969000 3571 4332 1 chr3B.!!$F1 761
6 TraesCS7D01G297400 chr5A 172464918 172465514 596 False 627.00 627 86.023000 2334 2918 1 chr5A.!!$F1 584
7 TraesCS7D01G297400 chr5A 172582617 172583213 596 False 538.00 538 83.361000 2334 2918 1 chr5A.!!$F3 584
8 TraesCS7D01G297400 chr5D 299422183 299422861 678 False 595.00 595 82.874000 2597 3270 1 chr5D.!!$F1 673
9 TraesCS7D01G297400 chr2D 416403640 416404275 635 False 571.00 571 83.283000 2490 3137 1 chr2D.!!$F3 647
10 TraesCS7D01G297400 chr1A 36163380 36164295 915 False 553.00 553 78.288000 4607 5536 1 chr1A.!!$F1 929
11 TraesCS7D01G297400 chr2A 582640545 582641194 649 False 551.00 551 82.519000 2490 3143 1 chr2A.!!$F1 653
12 TraesCS7D01G297400 chr2A 718605319 718606094 775 True 418.00 418 77.503000 3572 4340 1 chr2A.!!$R1 768
13 TraesCS7D01G297400 chr6A 39498920 39499606 686 True 545.00 545 81.636000 2600 3271 1 chr6A.!!$R1 671
14 TraesCS7D01G297400 chr5B 185723174 185723739 565 True 536.00 536 84.007000 2334 2917 1 chr5B.!!$R1 583
15 TraesCS7D01G297400 chr1B 132063288 132063964 676 True 523.00 523 80.876000 2597 3271 1 chr1B.!!$R1 674


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
631 646 0.036022 AGGTGAGTTGCTGCTTCCTC 59.964 55.0 0.0 4.17 0.00 3.71 F
749 764 0.324091 AGTCGGTCGGTCCCATACTT 60.324 55.0 0.0 0.00 0.00 2.24 F
863 878 0.326264 CCCAGAAACCAGAGTCCCTG 59.674 60.0 0.0 0.00 42.55 4.45 F
2240 2266 0.821711 AGGCACTAAAACGCAAGGCA 60.822 50.0 0.0 0.00 38.92 4.75 F
2852 2908 0.044855 AGGGGTGGGATAGAAGCAGT 59.955 55.0 0.0 0.00 0.00 4.40 F
3740 3850 0.320771 AAGTGACAGACGGCACCATC 60.321 55.0 0.0 0.00 35.67 3.51 F
4647 4918 0.106669 GGTAGGGGTGGGCAGAAATC 60.107 60.0 0.0 0.00 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2522 2548 0.110147 GAGCTACATCCGACGATCCG 60.110 60.000 0.0 0.0 0.00 4.18 R
2691 2723 2.592512 ACCTCTTCTCTCCTTCCCCATA 59.407 50.000 0.0 0.0 0.00 2.74 R
2757 2789 1.007600 TCCTTCTCCTCTGCATCCAGA 59.992 52.381 0.0 0.0 45.54 3.86 R
3824 3939 0.178975 TTGATGGGTTTTGGGCGACT 60.179 50.000 0.0 0.0 0.00 4.18 R
4149 4414 0.240945 CGTGGGTGCTGATTTTGGTC 59.759 55.000 0.0 0.0 0.00 4.02 R
4871 5154 0.107312 CGAGGTAGGAGAACGGAGGA 60.107 60.000 0.0 0.0 0.00 3.71 R
6568 7184 0.036577 GACCACTCAGTCAGCAGCAT 60.037 55.000 0.0 0.0 36.73 3.79 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 40 8.661352 TTCTTTCCATTTTTCATCTGTTTTCC 57.339 30.769 0.00 0.00 0.00 3.13
42 44 7.219484 TCCATTTTTCATCTGTTTTCCTCTC 57.781 36.000 0.00 0.00 0.00 3.20
85 89 6.328641 ACACGTGTCTACTCTTCTTTACAT 57.671 37.500 17.22 0.00 0.00 2.29
159 163 7.514784 TTCCAATATATGCCTTTGACATCTG 57.485 36.000 0.00 0.00 0.00 2.90
191 200 6.591062 TCATGTACGTTGTTTTCCTATACACC 59.409 38.462 0.00 0.00 0.00 4.16
212 221 6.659242 ACACCAGGAACATTCTTTTATACCAG 59.341 38.462 0.00 0.00 0.00 4.00
216 225 9.238368 CCAGGAACATTCTTTTATACCAGTTTA 57.762 33.333 0.00 0.00 0.00 2.01
316 325 9.921637 ATGTTTTCATATCGGTTGTACATTTTT 57.078 25.926 0.00 0.00 38.95 1.94
610 625 3.727258 CATTGACCGGGCTCCCCA 61.727 66.667 9.82 0.00 45.83 4.96
631 646 0.036022 AGGTGAGTTGCTGCTTCCTC 59.964 55.000 0.00 4.17 0.00 3.71
739 754 4.541085 AAAACAAAAGTTAGTCGGTCGG 57.459 40.909 0.00 0.00 0.00 4.79
747 762 1.066152 GTTAGTCGGTCGGTCCCATAC 59.934 57.143 0.00 0.00 0.00 2.39
748 763 0.548031 TAGTCGGTCGGTCCCATACT 59.452 55.000 0.00 0.00 0.00 2.12
749 764 0.324091 AGTCGGTCGGTCCCATACTT 60.324 55.000 0.00 0.00 0.00 2.24
785 800 1.069636 CAAGTTGTCGAAAGAGCAGGC 60.070 52.381 0.00 0.00 43.49 4.85
863 878 0.326264 CCCAGAAACCAGAGTCCCTG 59.674 60.000 0.00 0.00 42.55 4.45
958 974 4.803426 CTGCCGACCAGCGTCCTC 62.803 72.222 0.00 0.00 38.67 3.71
1289 1305 6.402226 GCGTAATTAGTCAATGCCTATAAGCC 60.402 42.308 0.00 0.00 0.00 4.35
1311 1327 2.615493 GCCTGCCTGTTTTAGTAGAGCA 60.615 50.000 0.00 0.00 0.00 4.26
1314 1330 4.081642 CCTGCCTGTTTTAGTAGAGCACTA 60.082 45.833 0.00 0.00 38.80 2.74
1460 1478 1.219213 TGGTTGGTTCCTGTTGGGATT 59.781 47.619 0.00 0.00 44.66 3.01
1509 1528 6.948886 TGGTGCAATGGTTAAGGTTTATCTTA 59.051 34.615 0.00 0.00 0.00 2.10
1583 1603 1.905215 ACTAGTGATGGTTGCTCTGCT 59.095 47.619 0.00 0.00 0.00 4.24
1677 1698 2.238646 TGGTATCCACGCTTCCTGAAAT 59.761 45.455 0.00 0.00 0.00 2.17
1689 1711 7.218773 CACGCTTCCTGAAATACATACAATTTG 59.781 37.037 0.00 0.00 0.00 2.32
1902 1924 2.386661 CCAGACATGGTTAGCTCGTT 57.613 50.000 0.00 0.00 42.17 3.85
1919 1942 4.712763 CTCGTTCTGTACCAAAAATCTGC 58.287 43.478 0.00 0.00 0.00 4.26
1942 1965 5.972382 GCTAGTACTCGTTTGATCTTGGTAG 59.028 44.000 0.00 0.00 0.00 3.18
1960 1983 8.818860 TCTTGGTAGGTTAAGCTTCTTGTAATA 58.181 33.333 13.21 0.00 0.00 0.98
2118 2144 2.841881 GGTCCCTTAATCCCAGTACACA 59.158 50.000 0.00 0.00 0.00 3.72
2123 2149 5.968167 TCCCTTAATCCCAGTACACATTACT 59.032 40.000 0.00 0.00 0.00 2.24
2144 2170 8.534333 TTACTCATGTAACAATCTGAACAGTC 57.466 34.615 1.73 0.00 34.10 3.51
2196 2222 5.983118 GGTTTAAAAGCTAACATTGTGCTGT 59.017 36.000 2.70 0.00 37.11 4.40
2197 2223 6.074356 GGTTTAAAAGCTAACATTGTGCTGTG 60.074 38.462 2.70 0.00 37.11 3.66
2225 2251 4.143333 GTAAGGCGAGGCGAGGCA 62.143 66.667 10.83 0.00 36.55 4.75
2234 2260 1.967597 GAGGCGAGGCACTAAAACGC 61.968 60.000 0.00 0.00 45.25 4.84
2240 2266 0.821711 AGGCACTAAAACGCAAGGCA 60.822 50.000 0.00 0.00 38.92 4.75
2243 2269 1.001815 GCACTAAAACGCAAGGCAAGA 60.002 47.619 0.00 0.00 46.39 3.02
2307 2333 8.947115 ACAATTAGGAGATTTAACAACTAGCAC 58.053 33.333 0.00 0.00 0.00 4.40
2350 2376 8.965819 ACATACATATGTGTTTAAGGAATTGCA 58.034 29.630 18.81 0.00 44.66 4.08
2480 2506 4.690748 CCACACAATGTACACTGGAGTAAG 59.309 45.833 9.42 0.00 0.00 2.34
2522 2548 2.369394 CAGAACCCATACTTCCAAGCC 58.631 52.381 0.00 0.00 0.00 4.35
2691 2723 5.426689 TCACTAGAGCAACCAGATCAAAT 57.573 39.130 0.00 0.00 34.30 2.32
2757 2789 2.174424 GGAGAAGCAGATTTGGGAGGAT 59.826 50.000 0.00 0.00 0.00 3.24
2758 2790 3.475575 GAGAAGCAGATTTGGGAGGATC 58.524 50.000 0.00 0.00 0.00 3.36
2845 2901 2.907042 GAGTATTGGAGGGGTGGGATAG 59.093 54.545 0.00 0.00 0.00 2.08
2852 2908 0.044855 AGGGGTGGGATAGAAGCAGT 59.955 55.000 0.00 0.00 0.00 4.40
3006 3068 4.443658 AGAGGAGAAAAGGAATCCCTCTT 58.556 43.478 0.00 0.00 45.82 2.85
3027 3089 0.515564 CGTGGATTGGACGTTTGGTC 59.484 55.000 0.00 0.00 45.31 4.02
3092 3176 1.078347 GTGGGCCCAATCTTTCCCA 59.922 57.895 30.64 0.00 45.87 4.37
3284 3368 1.909700 CGCCCCTATTGCCATTACAT 58.090 50.000 0.00 0.00 0.00 2.29
3293 3377 5.351465 CCTATTGCCATTACATACGCCTTAG 59.649 44.000 0.00 0.00 0.00 2.18
3303 3387 4.839121 ACATACGCCTTAGAAACAATGGA 58.161 39.130 0.00 0.00 0.00 3.41
3307 3391 2.223572 CGCCTTAGAAACAATGGATGGC 60.224 50.000 0.00 0.00 35.02 4.40
3318 3402 6.564557 AACAATGGATGGCATATCCTTTTT 57.435 33.333 17.15 9.55 38.95 1.94
3425 3509 4.301072 TGGGCAGCTAAGTTGAACTAAT 57.699 40.909 0.00 0.00 0.00 1.73
3526 3610 7.445945 AGTGAAGATTGCTTGTTACTAGAAGT 58.554 34.615 0.00 0.00 33.61 3.01
3595 3681 4.713553 TGCTTCAGTGTTCCTTGTATTGA 58.286 39.130 0.00 0.00 0.00 2.57
3740 3850 0.320771 AAGTGACAGACGGCACCATC 60.321 55.000 0.00 0.00 35.67 3.51
3824 3939 5.907207 TCCATCAAATCAAAACGGAAACAA 58.093 33.333 0.00 0.00 0.00 2.83
3920 4157 2.938428 TGCCTATCCCCAAACCAAAT 57.062 45.000 0.00 0.00 0.00 2.32
3921 4158 2.465813 TGCCTATCCCCAAACCAAATG 58.534 47.619 0.00 0.00 0.00 2.32
3943 4180 6.624352 TGAAAACTGAAAGAAGGATCACAG 57.376 37.500 0.00 0.00 37.43 3.66
4010 4247 4.278669 AGTCACACGACATGAAGTAGTTCT 59.721 41.667 11.52 0.00 45.23 3.01
4051 4288 2.102578 GCAACATATTCTGGTGGCCTT 58.897 47.619 3.32 0.00 43.24 4.35
4060 4297 0.540365 CTGGTGGCCTTGGTGATGTT 60.540 55.000 3.32 0.00 0.00 2.71
4063 4300 1.549203 GTGGCCTTGGTGATGTTGAT 58.451 50.000 3.32 0.00 0.00 2.57
4102 4342 1.461127 GATGCCGACACTGAACTTGTC 59.539 52.381 0.00 0.00 40.10 3.18
4122 4362 1.492599 CCTTCCCCTCCTTCATCCTTC 59.507 57.143 0.00 0.00 0.00 3.46
4149 4414 5.833082 AGTTGAACTATCTGTGCCTATACG 58.167 41.667 0.00 0.00 0.00 3.06
4190 4456 3.956199 GAGGCCAAGAAATCATTCATCCA 59.044 43.478 5.01 0.00 38.06 3.41
4207 4473 0.746063 CCATTGTGGCGGCATTACAT 59.254 50.000 17.19 1.92 0.00 2.29
4215 4481 0.944386 GCGGCATTACATCGGTTCAT 59.056 50.000 0.00 0.00 0.00 2.57
4259 4525 2.815647 GAACCCCGCGAGCTTGAG 60.816 66.667 8.23 0.21 0.00 3.02
4305 4571 1.972223 CACGGAGGAGTGGACGACT 60.972 63.158 0.00 0.00 38.40 4.18
4353 4619 3.270877 GCAATAGGTCGAGGTTCAACAT 58.729 45.455 0.00 0.00 0.00 2.71
4362 4628 1.003580 GAGGTTCAACATGGAGGAGCA 59.996 52.381 0.00 0.00 0.00 4.26
4368 4634 1.134580 CAACATGGAGGAGCAGACGAT 60.135 52.381 0.00 0.00 0.00 3.73
4399 4665 0.379669 GCCCAATCTCGTTGATGCAG 59.620 55.000 0.00 0.00 40.37 4.41
4400 4666 0.379669 CCCAATCTCGTTGATGCAGC 59.620 55.000 0.00 0.00 40.37 5.25
4491 4757 3.222354 GACGCCACAGTCTCCGGTT 62.222 63.158 0.00 0.00 38.09 4.44
4646 4917 1.921869 CGGTAGGGGTGGGCAGAAAT 61.922 60.000 0.00 0.00 0.00 2.17
4647 4918 0.106669 GGTAGGGGTGGGCAGAAATC 60.107 60.000 0.00 0.00 0.00 2.17
4649 4920 0.551377 TAGGGGTGGGCAGAAATCCA 60.551 55.000 0.00 0.00 0.00 3.41
4726 4999 4.448210 TGTTCAAAACCGAACTTAGCTCT 58.552 39.130 0.00 0.00 44.59 4.09
4871 5154 1.475751 CCATTCTTCACCATAGCGCCT 60.476 52.381 2.29 0.00 0.00 5.52
4956 5259 0.745845 CTTCTGTCCTTCATGGCCGG 60.746 60.000 0.00 0.00 35.26 6.13
4983 5286 1.486310 TGCCAGAATCTCCTAACGCAT 59.514 47.619 0.00 0.00 0.00 4.73
5020 5323 0.333993 ATGGCTTCACATGGCTTCCT 59.666 50.000 0.00 0.00 0.00 3.36
5131 5437 4.464947 CATTTCCTTCCTCCTACCATTCC 58.535 47.826 0.00 0.00 0.00 3.01
5135 5441 0.830648 TTCCTCCTACCATTCCTGCG 59.169 55.000 0.00 0.00 0.00 5.18
5192 5498 9.267096 GTTTCTTGCTTATTAAGATTTGACTCG 57.733 33.333 7.63 0.00 34.42 4.18
5206 5512 4.336889 TTGACTCGTGATTTGTTCCTCT 57.663 40.909 0.00 0.00 0.00 3.69
5389 5695 3.163467 AGACCAAACGCCTAGTCTAACT 58.837 45.455 0.00 0.00 37.81 2.24
5428 5734 7.176690 AGTGACAAAAAGTAAATCCCATGTAGG 59.823 37.037 0.00 0.00 37.03 3.18
5429 5735 7.007723 TGACAAAAAGTAAATCCCATGTAGGT 58.992 34.615 0.00 0.00 34.66 3.08
5430 5736 7.175990 TGACAAAAAGTAAATCCCATGTAGGTC 59.824 37.037 0.00 0.00 34.66 3.85
5471 5792 1.247567 AAGTCGTGGGGCAAAATCTG 58.752 50.000 0.00 0.00 0.00 2.90
5504 5825 6.491403 ACACCTTAATTGATTGTGAGAGCTTT 59.509 34.615 6.93 0.00 0.00 3.51
5546 6158 4.393062 AGTGAATTAAAGGACGAGTGCATG 59.607 41.667 0.00 0.00 0.00 4.06
5636 6249 4.876125 AGTTGCCTGTATGTCAGATATCG 58.124 43.478 0.00 0.00 46.27 2.92
5646 6259 5.535753 ATGTCAGATATCGTTCATGTCCA 57.464 39.130 0.00 0.00 0.00 4.02
5682 6295 1.858458 CCATGTATGTTACGCCACTCG 59.142 52.381 0.00 0.00 45.38 4.18
5694 6307 0.450583 GCCACTCGTGTCATACTCGA 59.549 55.000 4.44 4.44 41.06 4.04
5700 6313 0.169672 CGTGTCATACTCGACCGGTT 59.830 55.000 9.42 0.00 37.28 4.44
5715 6328 7.446625 ACTCGACCGGTTAATTAGTATATCTGT 59.553 37.037 9.42 0.00 0.00 3.41
5740 6354 1.322637 CACTCGATGCATCTGTTCGTG 59.677 52.381 23.73 17.20 34.60 4.35
5954 6568 6.183360 GGCGGCTGATTGATATAGTTTATTCC 60.183 42.308 0.00 0.00 0.00 3.01
6177 6791 4.098044 TGACGTCATTAGATCAGGTCCTTC 59.902 45.833 15.76 0.00 0.00 3.46
6281 6897 3.909995 TCCCTGAAATTTCCTGAGACTCA 59.090 43.478 15.48 4.78 0.00 3.41
6283 6899 4.457257 CCCTGAAATTTCCTGAGACTCAAC 59.543 45.833 15.48 0.00 0.00 3.18
6286 6902 6.433847 TGAAATTTCCTGAGACTCAACCTA 57.566 37.500 15.48 0.00 0.00 3.08
6350 6966 3.253188 TGAGAAGTGCTAACATTGTTGGC 59.747 43.478 25.67 25.67 0.00 4.52
6351 6967 3.221771 AGAAGTGCTAACATTGTTGGCA 58.778 40.909 29.61 29.61 0.00 4.92
6352 6968 3.828451 AGAAGTGCTAACATTGTTGGCAT 59.172 39.130 33.63 23.28 35.37 4.40
6353 6969 3.581024 AGTGCTAACATTGTTGGCATG 57.419 42.857 33.63 4.03 35.37 4.06
6354 6970 2.892852 AGTGCTAACATTGTTGGCATGT 59.107 40.909 33.63 24.18 35.37 3.21
6355 6971 4.078537 AGTGCTAACATTGTTGGCATGTA 58.921 39.130 33.63 15.43 35.37 2.29
6356 6972 4.082787 AGTGCTAACATTGTTGGCATGTAC 60.083 41.667 33.63 23.68 35.37 2.90
6357 6973 4.078537 TGCTAACATTGTTGGCATGTACT 58.921 39.130 29.61 0.00 0.00 2.73
6358 6974 4.155826 TGCTAACATTGTTGGCATGTACTC 59.844 41.667 29.61 6.28 0.00 2.59
6359 6975 4.438744 GCTAACATTGTTGGCATGTACTCC 60.439 45.833 26.93 0.43 0.00 3.85
6360 6976 2.446435 ACATTGTTGGCATGTACTCCC 58.554 47.619 0.00 0.00 0.00 4.30
6361 6977 2.041620 ACATTGTTGGCATGTACTCCCT 59.958 45.455 0.00 0.00 0.00 4.20
6362 6978 2.489938 TTGTTGGCATGTACTCCCTC 57.510 50.000 0.00 0.00 0.00 4.30
6363 6979 0.618458 TGTTGGCATGTACTCCCTCC 59.382 55.000 0.00 0.00 0.00 4.30
6364 6980 0.462047 GTTGGCATGTACTCCCTCCG 60.462 60.000 0.00 0.00 0.00 4.63
6365 6981 0.907704 TTGGCATGTACTCCCTCCGT 60.908 55.000 0.00 0.00 0.00 4.69
6366 6982 0.907704 TGGCATGTACTCCCTCCGTT 60.908 55.000 0.00 0.00 0.00 4.44
6367 6983 0.179081 GGCATGTACTCCCTCCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
6368 6984 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
6369 6985 1.486211 CATGTACTCCCTCCGTTCCT 58.514 55.000 0.00 0.00 0.00 3.36
6370 6986 2.662866 CATGTACTCCCTCCGTTCCTA 58.337 52.381 0.00 0.00 0.00 2.94
6371 6987 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
6372 6988 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
6373 6989 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
6374 6990 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
6375 6991 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
6376 6992 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
6377 6993 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
6378 6994 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
6379 6995 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
6380 6996 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
6381 6997 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
6382 6998 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
6383 6999 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
6384 7000 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
6385 7001 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
6401 7017 7.856145 AGTCTTTTTAGAGATTGCACTATGG 57.144 36.000 0.00 0.00 0.00 2.74
6402 7018 7.624549 AGTCTTTTTAGAGATTGCACTATGGA 58.375 34.615 0.00 0.00 0.00 3.41
6403 7019 7.550906 AGTCTTTTTAGAGATTGCACTATGGAC 59.449 37.037 0.00 0.00 0.00 4.02
6404 7020 7.550906 GTCTTTTTAGAGATTGCACTATGGACT 59.449 37.037 0.00 0.00 0.00 3.85
6405 7021 8.758829 TCTTTTTAGAGATTGCACTATGGACTA 58.241 33.333 0.00 0.00 0.00 2.59
6406 7022 8.718102 TTTTTAGAGATTGCACTATGGACTAC 57.282 34.615 0.00 0.00 0.00 2.73
6407 7023 7.418337 TTTAGAGATTGCACTATGGACTACA 57.582 36.000 0.00 0.00 0.00 2.74
6408 7024 7.603180 TTAGAGATTGCACTATGGACTACAT 57.397 36.000 0.00 0.00 43.68 2.29
6409 7025 8.706322 TTAGAGATTGCACTATGGACTACATA 57.294 34.615 0.00 0.00 41.03 2.29
6410 7026 6.987386 AGAGATTGCACTATGGACTACATAC 58.013 40.000 0.00 0.00 41.03 2.39
6411 7027 5.773575 AGATTGCACTATGGACTACATACG 58.226 41.667 0.00 0.00 41.03 3.06
6412 7028 4.316205 TTGCACTATGGACTACATACGG 57.684 45.455 0.00 0.00 41.03 4.02
6413 7029 3.558033 TGCACTATGGACTACATACGGA 58.442 45.455 0.00 0.00 41.03 4.69
6414 7030 3.568430 TGCACTATGGACTACATACGGAG 59.432 47.826 0.00 0.00 41.03 4.63
6415 7031 3.612004 GCACTATGGACTACATACGGAGC 60.612 52.174 0.00 0.00 41.03 4.70
6416 7032 3.568430 CACTATGGACTACATACGGAGCA 59.432 47.826 0.00 0.00 41.03 4.26
6417 7033 4.037565 CACTATGGACTACATACGGAGCAA 59.962 45.833 0.00 0.00 41.03 3.91
6418 7034 4.647853 ACTATGGACTACATACGGAGCAAA 59.352 41.667 0.00 0.00 41.03 3.68
6419 7035 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
6420 7036 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
6421 7037 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
6422 7038 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
6423 7039 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
6424 7040 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
6425 7041 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
6426 7042 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
6427 7043 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
6428 7044 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
6429 7045 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
6430 7046 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
6431 7047 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
6432 7048 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
6433 7049 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
6434 7050 7.220030 ACGGAGCAAAATGAGTGAATCTATAT 58.780 34.615 0.00 0.00 0.00 0.86
6435 7051 7.716998 ACGGAGCAAAATGAGTGAATCTATATT 59.283 33.333 0.00 0.00 0.00 1.28
6436 7052 8.226448 CGGAGCAAAATGAGTGAATCTATATTC 58.774 37.037 0.00 0.00 41.69 1.75
6437 7053 9.282569 GGAGCAAAATGAGTGAATCTATATTCT 57.717 33.333 2.89 0.00 41.83 2.40
6468 7084 8.783833 ATGTCTATATACATCCGTACGTAGTT 57.216 34.615 15.21 0.00 37.47 2.24
6469 7085 8.607441 TGTCTATATACATCCGTACGTAGTTT 57.393 34.615 15.21 7.24 37.78 2.66
6470 7086 8.498358 TGTCTATATACATCCGTACGTAGTTTG 58.502 37.037 15.21 6.57 37.78 2.93
6471 7087 8.499162 GTCTATATACATCCGTACGTAGTTTGT 58.501 37.037 15.21 11.74 37.78 2.83
6472 7088 9.705290 TCTATATACATCCGTACGTAGTTTGTA 57.295 33.333 15.21 13.36 37.78 2.41
6473 7089 9.964253 CTATATACATCCGTACGTAGTTTGTAG 57.036 37.037 15.21 11.53 37.78 2.74
6474 7090 6.683974 ATACATCCGTACGTAGTTTGTAGT 57.316 37.500 15.21 3.94 37.78 2.73
6475 7091 4.726416 ACATCCGTACGTAGTTTGTAGTG 58.274 43.478 15.21 0.00 37.78 2.74
6476 7092 3.829886 TCCGTACGTAGTTTGTAGTGG 57.170 47.619 15.21 0.00 37.78 4.00
6477 7093 3.407698 TCCGTACGTAGTTTGTAGTGGA 58.592 45.455 15.21 0.00 37.78 4.02
6478 7094 3.818210 TCCGTACGTAGTTTGTAGTGGAA 59.182 43.478 15.21 0.00 37.78 3.53
6479 7095 4.458989 TCCGTACGTAGTTTGTAGTGGAAT 59.541 41.667 15.21 0.00 37.78 3.01
6480 7096 4.795278 CCGTACGTAGTTTGTAGTGGAATC 59.205 45.833 15.21 0.00 37.78 2.52
6481 7097 5.392380 CCGTACGTAGTTTGTAGTGGAATCT 60.392 44.000 15.21 0.00 37.78 2.40
6482 7098 6.088824 CGTACGTAGTTTGTAGTGGAATCTT 58.911 40.000 7.22 0.00 37.78 2.40
6483 7099 6.583806 CGTACGTAGTTTGTAGTGGAATCTTT 59.416 38.462 7.22 0.00 37.78 2.52
6484 7100 7.750458 CGTACGTAGTTTGTAGTGGAATCTTTA 59.250 37.037 7.22 0.00 37.78 1.85
6485 7101 9.410556 GTACGTAGTTTGTAGTGGAATCTTTAA 57.589 33.333 0.00 0.00 37.78 1.52
6486 7102 8.530269 ACGTAGTTTGTAGTGGAATCTTTAAG 57.470 34.615 0.00 0.00 37.78 1.85
6487 7103 8.362639 ACGTAGTTTGTAGTGGAATCTTTAAGA 58.637 33.333 0.00 0.00 37.78 2.10
6488 7104 9.199982 CGTAGTTTGTAGTGGAATCTTTAAGAA 57.800 33.333 0.00 0.00 0.00 2.52
6510 7126 9.780186 AAGAAGATTTATATTTAGGAACGGAGG 57.220 33.333 0.00 0.00 0.00 4.30
6511 7127 8.376270 AGAAGATTTATATTTAGGAACGGAGGG 58.624 37.037 0.00 0.00 0.00 4.30
6512 7128 7.867160 AGATTTATATTTAGGAACGGAGGGA 57.133 36.000 0.00 0.00 0.00 4.20
6513 7129 7.908453 AGATTTATATTTAGGAACGGAGGGAG 58.092 38.462 0.00 0.00 0.00 4.30
6514 7130 7.513091 AGATTTATATTTAGGAACGGAGGGAGT 59.487 37.037 0.00 0.00 0.00 3.85
6515 7131 8.731591 ATTTATATTTAGGAACGGAGGGAGTA 57.268 34.615 0.00 0.00 0.00 2.59
6516 7132 7.771927 TTATATTTAGGAACGGAGGGAGTAG 57.228 40.000 0.00 0.00 0.00 2.57
6517 7133 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
6558 7174 3.584406 TGACTGAGTGGTCAAAGATGGAT 59.416 43.478 0.00 0.00 42.35 3.41
6559 7175 3.937706 GACTGAGTGGTCAAAGATGGATG 59.062 47.826 0.00 0.00 36.35 3.51
6560 7176 3.584406 ACTGAGTGGTCAAAGATGGATGA 59.416 43.478 0.00 0.00 30.14 2.92
6561 7177 4.190001 CTGAGTGGTCAAAGATGGATGAG 58.810 47.826 0.00 0.00 30.14 2.90
6562 7178 3.584406 TGAGTGGTCAAAGATGGATGAGT 59.416 43.478 0.00 0.00 0.00 3.41
6563 7179 4.777366 TGAGTGGTCAAAGATGGATGAGTA 59.223 41.667 0.00 0.00 0.00 2.59
6564 7180 5.105187 TGAGTGGTCAAAGATGGATGAGTAG 60.105 44.000 0.00 0.00 0.00 2.57
6565 7181 5.026121 AGTGGTCAAAGATGGATGAGTAGA 58.974 41.667 0.00 0.00 0.00 2.59
6566 7182 5.128499 AGTGGTCAAAGATGGATGAGTAGAG 59.872 44.000 0.00 0.00 0.00 2.43
6567 7183 4.141846 TGGTCAAAGATGGATGAGTAGAGC 60.142 45.833 0.00 0.00 0.00 4.09
6568 7184 4.141846 GGTCAAAGATGGATGAGTAGAGCA 60.142 45.833 0.00 0.00 0.00 4.26
6569 7185 5.454471 GGTCAAAGATGGATGAGTAGAGCAT 60.454 44.000 0.00 0.00 0.00 3.79
6570 7186 5.466058 GTCAAAGATGGATGAGTAGAGCATG 59.534 44.000 0.00 0.00 0.00 4.06
6571 7187 3.681593 AGATGGATGAGTAGAGCATGC 57.318 47.619 10.51 10.51 35.04 4.06
6572 7188 3.241156 AGATGGATGAGTAGAGCATGCT 58.759 45.455 22.92 22.92 35.44 3.79
6573 7189 2.904697 TGGATGAGTAGAGCATGCTG 57.095 50.000 28.27 0.00 35.44 4.41
6574 7190 1.202615 TGGATGAGTAGAGCATGCTGC 60.203 52.381 28.27 16.52 45.46 5.25
6583 7199 4.298009 GCATGCTGCTGACTGAGT 57.702 55.556 11.37 0.00 40.96 3.41
6584 7200 1.794864 GCATGCTGCTGACTGAGTG 59.205 57.895 11.37 0.00 40.96 3.51
6585 7201 1.645704 GCATGCTGCTGACTGAGTGG 61.646 60.000 11.37 0.00 40.96 4.00
6586 7202 0.321387 CATGCTGCTGACTGAGTGGT 60.321 55.000 0.00 0.00 0.00 4.16
6587 7203 0.036577 ATGCTGCTGACTGAGTGGTC 60.037 55.000 0.00 0.00 36.81 4.02
6588 7204 1.368950 GCTGCTGACTGAGTGGTCA 59.631 57.895 0.00 0.00 42.96 4.02
6589 7205 0.250038 GCTGCTGACTGAGTGGTCAA 60.250 55.000 0.00 0.00 44.24 3.18
6590 7206 1.811558 GCTGCTGACTGAGTGGTCAAA 60.812 52.381 0.00 0.00 44.24 2.69
6591 7207 2.141517 CTGCTGACTGAGTGGTCAAAG 58.858 52.381 0.00 0.00 44.24 2.77
6592 7208 1.762370 TGCTGACTGAGTGGTCAAAGA 59.238 47.619 0.00 0.00 44.24 2.52
6593 7209 2.369860 TGCTGACTGAGTGGTCAAAGAT 59.630 45.455 0.00 0.00 44.24 2.40
6594 7210 2.740981 GCTGACTGAGTGGTCAAAGATG 59.259 50.000 0.00 0.00 44.24 2.90
6595 7211 3.332919 CTGACTGAGTGGTCAAAGATGG 58.667 50.000 0.00 0.00 44.24 3.51
6596 7212 2.972021 TGACTGAGTGGTCAAAGATGGA 59.028 45.455 0.00 0.00 42.35 3.41
6735 7351 3.771160 GACGCCACCATCCCTCGT 61.771 66.667 0.00 0.00 35.98 4.18
6736 7352 3.310860 GACGCCACCATCCCTCGTT 62.311 63.158 0.00 0.00 33.21 3.85
6737 7353 2.819595 CGCCACCATCCCTCGTTG 60.820 66.667 0.00 0.00 0.00 4.10
6804 7465 1.472878 TGTACTCTACTCCTGCGCTTG 59.527 52.381 9.73 0.76 0.00 4.01
6866 7530 6.144724 CGAGAGAAAGAGAAAAGTAAGGTGTG 59.855 42.308 0.00 0.00 0.00 3.82
6895 7559 4.863131 GGTCGAGAGAATGATACACGTTTT 59.137 41.667 0.00 0.00 45.01 2.43
6897 7561 5.800941 GTCGAGAGAATGATACACGTTTTCT 59.199 40.000 0.00 0.00 45.01 2.52
6921 7585 0.945099 CTAGCATCAGGAGACGCGTA 59.055 55.000 13.97 0.00 0.00 4.42
6925 7589 1.802880 GCATCAGGAGACGCGTACAAT 60.803 52.381 13.97 0.00 0.00 2.71
6929 7593 3.011818 TCAGGAGACGCGTACAATAAGA 58.988 45.455 13.97 1.56 0.00 2.10
6930 7594 3.106672 CAGGAGACGCGTACAATAAGAC 58.893 50.000 13.97 0.00 0.00 3.01
6931 7595 2.107178 GGAGACGCGTACAATAAGACG 58.893 52.381 13.97 0.00 41.97 4.18
6932 7596 2.223112 GGAGACGCGTACAATAAGACGA 60.223 50.000 13.97 0.00 41.60 4.20
6933 7597 3.547613 GGAGACGCGTACAATAAGACGAT 60.548 47.826 13.97 0.00 41.60 3.73
6934 7598 3.360533 AGACGCGTACAATAAGACGATG 58.639 45.455 13.97 0.00 41.60 3.84
6935 7599 3.103738 GACGCGTACAATAAGACGATGT 58.896 45.455 13.97 0.00 41.60 3.06
6936 7600 4.034394 AGACGCGTACAATAAGACGATGTA 59.966 41.667 13.97 0.00 41.60 2.29
6937 7601 4.661125 ACGCGTACAATAAGACGATGTAA 58.339 39.130 11.67 0.00 41.60 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 8.483307 AAAGAAGAGTAGACACGTGTTAAAAA 57.517 30.769 24.26 4.00 0.00 1.94
57 59 9.023967 GTAAAGAAGAGTAGACACGTGTTAAAA 57.976 33.333 24.26 5.89 0.00 1.52
58 60 8.190122 TGTAAAGAAGAGTAGACACGTGTTAAA 58.810 33.333 24.26 8.56 0.00 1.52
59 61 7.706159 TGTAAAGAAGAGTAGACACGTGTTAA 58.294 34.615 24.26 11.29 0.00 2.01
132 136 9.151177 AGATGTCAAAGGCATATATTGGAAAAT 57.849 29.630 0.00 0.00 0.00 1.82
135 139 6.016024 GCAGATGTCAAAGGCATATATTGGAA 60.016 38.462 0.00 0.00 0.00 3.53
136 140 5.474532 GCAGATGTCAAAGGCATATATTGGA 59.525 40.000 0.00 0.00 0.00 3.53
173 177 4.571919 TCCTGGTGTATAGGAAAACAACG 58.428 43.478 0.00 0.00 41.24 4.10
288 297 7.857734 ATGTACAACCGATATGAAAACATCA 57.142 32.000 0.00 0.00 43.67 3.07
444 456 9.612620 AAACGTTGAAAAATGCAAACAATTTTA 57.387 22.222 0.00 0.00 38.65 1.52
454 466 9.994432 AAAATATTGAAAACGTTGAAAAATGCA 57.006 22.222 0.00 0.00 0.00 3.96
568 583 1.219124 CCCACATACTGCTCAGCGT 59.781 57.895 0.00 0.00 0.00 5.07
572 587 1.897423 CCGACCCACATACTGCTCA 59.103 57.895 0.00 0.00 0.00 4.26
601 616 3.086600 CTCACCTCTGGGGAGCCC 61.087 72.222 0.00 0.00 45.71 5.19
610 625 0.036022 GGAAGCAGCAACTCACCTCT 59.964 55.000 0.00 0.00 0.00 3.69
613 628 1.294659 CGAGGAAGCAGCAACTCACC 61.295 60.000 10.45 0.00 0.00 4.02
614 629 0.319900 TCGAGGAAGCAGCAACTCAC 60.320 55.000 10.45 0.00 0.00 3.51
615 630 0.392706 TTCGAGGAAGCAGCAACTCA 59.607 50.000 10.45 0.00 0.00 3.41
691 706 2.864343 CAAATCCGACCGCCTAAAGTAG 59.136 50.000 0.00 0.00 0.00 2.57
692 707 2.896168 CAAATCCGACCGCCTAAAGTA 58.104 47.619 0.00 0.00 0.00 2.24
693 708 1.734163 CAAATCCGACCGCCTAAAGT 58.266 50.000 0.00 0.00 0.00 2.66
694 709 0.377203 GCAAATCCGACCGCCTAAAG 59.623 55.000 0.00 0.00 0.00 1.85
695 710 0.035820 AGCAAATCCGACCGCCTAAA 60.036 50.000 0.00 0.00 0.00 1.85
696 711 0.461339 GAGCAAATCCGACCGCCTAA 60.461 55.000 0.00 0.00 0.00 2.69
697 712 1.143183 GAGCAAATCCGACCGCCTA 59.857 57.895 0.00 0.00 0.00 3.93
698 713 2.125106 GAGCAAATCCGACCGCCT 60.125 61.111 0.00 0.00 0.00 5.52
699 714 1.582610 TTTGAGCAAATCCGACCGCC 61.583 55.000 0.00 0.00 0.00 6.13
721 736 2.546584 GGACCGACCGACTAACTTTTGT 60.547 50.000 0.00 0.00 0.00 2.83
770 785 1.004560 CCAGCCTGCTCTTTCGACA 60.005 57.895 0.00 0.00 0.00 4.35
774 789 2.753446 GGCCCAGCCTGCTCTTTC 60.753 66.667 0.00 0.00 46.69 2.62
863 878 0.467804 GGAGAGGGAGATTGAGTGGC 59.532 60.000 0.00 0.00 0.00 5.01
972 988 3.195698 GAAAGCTCGCCGCCGATT 61.196 61.111 0.00 0.00 43.47 3.34
1226 1242 6.470278 GGATGAAGATGATCATACCATGTGA 58.530 40.000 8.54 0.00 40.08 3.58
1289 1305 2.271800 CTCTACTAAAACAGGCAGGCG 58.728 52.381 0.00 0.00 0.00 5.52
1311 1327 4.780021 AGGGAATCAAGCGATCCATATAGT 59.220 41.667 0.00 0.00 0.00 2.12
1314 1330 5.026121 TCTAGGGAATCAAGCGATCCATAT 58.974 41.667 0.00 0.00 0.00 1.78
1460 1478 4.160439 AGAATCTGGAATCGCAAGTCTACA 59.840 41.667 0.00 0.00 39.48 2.74
1565 1585 2.302733 TGAAGCAGAGCAACCATCACTA 59.697 45.455 0.00 0.00 0.00 2.74
1583 1603 4.111375 GACTGCTAGGAAGTCGAATGAA 57.889 45.455 0.00 0.00 35.12 2.57
1625 1646 2.375174 ACAACACCCCTGAATTGAGCTA 59.625 45.455 0.00 0.00 0.00 3.32
1689 1711 6.473758 ACCATGTCTTTAGAACTTTAGACCC 58.526 40.000 0.00 0.00 36.94 4.46
1722 1744 2.343101 GCACACGTGATGCCTTACTTA 58.657 47.619 25.01 0.00 37.08 2.24
1800 1822 3.748645 ACACAGAGACCCACTAGAGAT 57.251 47.619 0.00 0.00 0.00 2.75
1850 1872 9.968743 CTAGAGGCACTAATTTAAAACTTAACG 57.031 33.333 0.00 0.00 41.55 3.18
1864 1886 5.047519 GTCTGGTTAACACTAGAGGCACTAA 60.048 44.000 8.10 0.00 40.95 2.24
1902 1924 7.241042 AGTACTAGCAGATTTTTGGTACAGA 57.759 36.000 0.00 0.00 42.39 3.41
1919 1942 6.095160 ACCTACCAAGATCAAACGAGTACTAG 59.905 42.308 0.00 0.00 0.00 2.57
1960 1983 9.212593 ACCTTATGAAATTACCTGGCATTATTT 57.787 29.630 0.00 0.00 0.00 1.40
2088 2114 4.202727 TGGGATTAAGGGACCAACATTTCA 60.203 41.667 0.00 0.00 0.00 2.69
2118 2144 9.155975 GACTGTTCAGATTGTTACATGAGTAAT 57.844 33.333 0.00 0.00 41.86 1.89
2123 2149 4.929211 CCGACTGTTCAGATTGTTACATGA 59.071 41.667 0.00 0.00 0.00 3.07
2144 2170 4.444056 GGTTCACACAACAATTCAATTCCG 59.556 41.667 0.00 0.00 0.00 4.30
2196 2222 3.689161 CCTCGCCTTACAAACATTGATCA 59.311 43.478 0.00 0.00 0.00 2.92
2197 2223 3.487544 GCCTCGCCTTACAAACATTGATC 60.488 47.826 0.00 0.00 0.00 2.92
2225 2251 1.263217 CGTCTTGCCTTGCGTTTTAGT 59.737 47.619 0.00 0.00 0.00 2.24
2240 2266 0.956633 TGTGTCTAAGGCGTCGTCTT 59.043 50.000 17.35 17.35 0.00 3.01
2243 2269 1.814394 TGTATGTGTCTAAGGCGTCGT 59.186 47.619 0.00 0.00 0.00 4.34
2350 2376 6.809428 TCCATGGAGATTAGGATAGAGATGT 58.191 40.000 11.44 0.00 0.00 3.06
2449 2475 3.501828 GTGTACATTGTGTGGCAAGATGA 59.498 43.478 0.00 0.00 40.86 2.92
2450 2476 3.503363 AGTGTACATTGTGTGGCAAGATG 59.497 43.478 0.00 0.00 40.86 2.90
2480 2506 3.181459 GGCCAGATTTAGAGAGGAAGGAC 60.181 52.174 0.00 0.00 0.00 3.85
2483 2509 3.708631 TCTGGCCAGATTTAGAGAGGAAG 59.291 47.826 32.00 0.66 31.41 3.46
2522 2548 0.110147 GAGCTACATCCGACGATCCG 60.110 60.000 0.00 0.00 0.00 4.18
2691 2723 2.592512 ACCTCTTCTCTCCTTCCCCATA 59.407 50.000 0.00 0.00 0.00 2.74
2757 2789 1.007600 TCCTTCTCCTCTGCATCCAGA 59.992 52.381 0.00 0.00 45.54 3.86
2758 2790 1.493861 TCCTTCTCCTCTGCATCCAG 58.506 55.000 0.00 0.00 40.54 3.86
2845 2901 1.073897 ACCTGCCCTTCACTGCTTC 59.926 57.895 0.00 0.00 0.00 3.86
2852 2908 1.376466 GCTTCTCACCTGCCCTTCA 59.624 57.895 0.00 0.00 0.00 3.02
2972 3033 2.704190 TCTCCTCTCTCACCTTTGGT 57.296 50.000 0.00 0.00 35.62 3.67
2981 3042 4.037222 AGGGATTCCTTTTCTCCTCTCTC 58.963 47.826 2.01 0.00 41.56 3.20
3006 3068 1.511318 CCAAACGTCCAATCCACGCA 61.511 55.000 0.00 0.00 41.10 5.24
3027 3089 2.206536 GGGCAGGAGAGAGGATCGG 61.207 68.421 0.00 0.00 42.67 4.18
3092 3176 2.854522 CCGAGCGGGAAACTTTCAT 58.145 52.632 0.00 0.00 38.47 2.57
3164 3248 0.991146 TTCCTAGGCATGCAAGGTGA 59.009 50.000 28.05 19.09 0.00 4.02
3272 3356 4.968259 TCTAAGGCGTATGTAATGGCAAT 58.032 39.130 0.00 0.00 42.10 3.56
3273 3357 4.409718 TCTAAGGCGTATGTAATGGCAA 57.590 40.909 0.00 0.00 42.10 4.52
3274 3358 4.409718 TTCTAAGGCGTATGTAATGGCA 57.590 40.909 0.00 0.00 42.10 4.92
3275 3359 4.573201 TGTTTCTAAGGCGTATGTAATGGC 59.427 41.667 0.00 0.00 39.96 4.40
3277 3361 7.011950 TCCATTGTTTCTAAGGCGTATGTAATG 59.988 37.037 0.00 0.00 0.00 1.90
3278 3362 7.051623 TCCATTGTTTCTAAGGCGTATGTAAT 58.948 34.615 0.00 0.00 0.00 1.89
3284 3368 4.196193 CCATCCATTGTTTCTAAGGCGTA 58.804 43.478 0.00 0.00 0.00 4.42
3293 3377 5.796424 AAGGATATGCCATCCATTGTTTC 57.204 39.130 14.93 0.00 40.61 2.78
3334 3418 1.208535 CCAAAATGGCATGCATCACCT 59.791 47.619 21.36 0.00 0.00 4.00
3337 3421 3.243941 GCTATCCAAAATGGCATGCATCA 60.244 43.478 21.36 9.76 37.47 3.07
3425 3509 7.345653 ACTCTGAAATACCTCCACAGAATATCA 59.654 37.037 0.00 0.00 37.20 2.15
3595 3681 0.973632 TGTGGCTGACCGTGTTCTAT 59.026 50.000 0.00 0.00 39.70 1.98
3740 3850 1.228124 TGTTCTTGCGTTGGGGAGG 60.228 57.895 0.00 0.00 0.00 4.30
3824 3939 0.178975 TTGATGGGTTTTGGGCGACT 60.179 50.000 0.00 0.00 0.00 4.18
3920 4157 5.009010 GCTGTGATCCTTCTTTCAGTTTTCA 59.991 40.000 0.00 0.00 0.00 2.69
3921 4158 5.009010 TGCTGTGATCCTTCTTTCAGTTTTC 59.991 40.000 0.00 0.00 0.00 2.29
3943 4180 5.804639 ACCATCCTTTATTTTCCCTTTTGC 58.195 37.500 0.00 0.00 0.00 3.68
4010 4247 2.096980 CGAGTCCAGCGAGTATGTGTAA 59.903 50.000 0.00 0.00 0.00 2.41
4102 4342 1.492599 GAAGGATGAAGGAGGGGAAGG 59.507 57.143 0.00 0.00 0.00 3.46
4122 4362 2.159653 GGCACAGATAGTTCAACTTGCG 60.160 50.000 0.00 0.00 0.00 4.85
4149 4414 0.240945 CGTGGGTGCTGATTTTGGTC 59.759 55.000 0.00 0.00 0.00 4.02
4190 4456 0.662619 CGATGTAATGCCGCCACAAT 59.337 50.000 0.00 0.00 0.00 2.71
4207 4473 1.614903 ACCGTTGACACTATGAACCGA 59.385 47.619 0.00 0.00 0.00 4.69
4215 4481 4.525487 ACCTTCTATTCACCGTTGACACTA 59.475 41.667 0.00 0.00 0.00 2.74
4248 4514 4.845580 ATGGCCCTCAAGCTCGCG 62.846 66.667 0.00 0.00 0.00 5.87
4259 4525 1.885871 GACTGTTTCAGCATGGCCC 59.114 57.895 0.00 0.00 34.37 5.80
4297 4563 1.540267 GCAGAGTGTAGAAGTCGTCCA 59.460 52.381 0.00 0.00 33.01 4.02
4305 4571 3.327757 ACAAGATTGGGCAGAGTGTAGAA 59.672 43.478 0.00 0.00 0.00 2.10
4353 4619 0.323816 AGACATCGTCTGCTCCTCCA 60.324 55.000 0.00 0.00 41.76 3.86
4362 4628 1.746220 GGCAGAGTGTAGACATCGTCT 59.254 52.381 1.75 1.75 45.54 4.18
4368 4634 2.497675 GAGATTGGGCAGAGTGTAGACA 59.502 50.000 0.00 0.00 0.00 3.41
4472 4738 3.680786 CCGGAGACTGTGGCGTCA 61.681 66.667 0.00 0.00 36.38 4.35
4646 4917 2.940994 TCCAGTTTTCGGTTCATGGA 57.059 45.000 0.00 0.00 34.54 3.41
4647 4918 2.095853 CGATCCAGTTTTCGGTTCATGG 59.904 50.000 0.00 0.00 0.00 3.66
4649 4920 3.056107 TCTCGATCCAGTTTTCGGTTCAT 60.056 43.478 0.00 0.00 36.08 2.57
4726 4999 5.591472 CCTTGATGCAATATCTCAGTCCAAA 59.409 40.000 0.00 0.00 0.00 3.28
4792 5065 4.339247 GGATGTAAGGCTACGTAGGTGTAA 59.661 45.833 23.47 0.00 0.00 2.41
4871 5154 0.107312 CGAGGTAGGAGAACGGAGGA 60.107 60.000 0.00 0.00 0.00 3.71
4956 5259 1.280421 AGGAGATTCTGGCACAACCTC 59.720 52.381 0.00 0.00 38.70 3.85
4967 5270 4.038162 GGACACTATGCGTTAGGAGATTCT 59.962 45.833 0.00 0.00 31.68 2.40
4969 5272 3.243434 CGGACACTATGCGTTAGGAGATT 60.243 47.826 0.00 0.00 37.38 2.40
4983 5286 1.068125 CATGTGAACGACCGGACACTA 60.068 52.381 9.46 2.52 34.81 2.74
5039 5342 1.693606 TGCTATCATCGGCCATGAAGA 59.306 47.619 17.97 5.21 45.06 2.87
5131 5437 1.465354 GCAGAAATCAAGCACTCGCAG 60.465 52.381 0.00 0.00 42.27 5.18
5135 5441 2.072298 ACGAGCAGAAATCAAGCACTC 58.928 47.619 0.00 0.00 0.00 3.51
5192 5498 7.247019 GCTATTTTCTGAGAGGAACAAATCAC 58.753 38.462 0.00 0.00 0.00 3.06
5206 5512 3.513912 TGAAGAGGACCGCTATTTTCTGA 59.486 43.478 0.00 0.00 0.00 3.27
5389 5695 3.415457 TTGTCACTGTATGGCATGTCA 57.585 42.857 10.98 0.60 44.20 3.58
5395 5701 6.806739 GGATTTACTTTTTGTCACTGTATGGC 59.193 38.462 0.00 0.00 0.00 4.40
5400 5706 6.323739 ACATGGGATTTACTTTTTGTCACTGT 59.676 34.615 0.00 0.00 0.00 3.55
5429 5735 1.754380 CTTGGTCACTCGGTGGGTGA 61.754 60.000 0.00 0.00 40.78 4.02
5430 5736 1.301716 CTTGGTCACTCGGTGGGTG 60.302 63.158 4.52 0.00 33.87 4.61
5471 5792 9.906660 TCACAATCAATTAAGGTGTACAATTTC 57.093 29.630 0.00 0.00 0.00 2.17
5504 5825 4.479796 TCACTCTAAGCTACCTAGGGGTTA 59.520 45.833 14.81 11.10 44.73 2.85
5636 6249 4.202101 TGTTGACCAAACATGGACATGAAC 60.202 41.667 18.38 10.52 43.96 3.18
5682 6295 3.492421 TTAACCGGTCGAGTATGACAC 57.508 47.619 8.04 0.00 40.72 3.67
5715 6328 4.091365 CGAACAGATGCATCGAGTGTTTTA 59.909 41.667 25.07 0.00 38.82 1.52
5740 6354 8.911965 ACTACTTTACTAGTTTCCATAGTAGCC 58.088 37.037 15.39 0.00 38.10 3.93
5954 6568 0.108138 ATCTCACGGCCGAGAAAAGG 60.108 55.000 35.90 17.62 44.92 3.11
6202 6816 1.025812 AATGTTCGGCGTTCCAAACA 58.974 45.000 12.50 12.50 0.00 2.83
6281 6897 4.356289 GAAAACACGCAACAACATAGGTT 58.644 39.130 0.00 0.00 37.87 3.50
6283 6899 3.305110 GGAAAACACGCAACAACATAGG 58.695 45.455 0.00 0.00 0.00 2.57
6286 6902 1.478510 TGGGAAAACACGCAACAACAT 59.521 42.857 0.00 0.00 0.00 2.71
6350 6966 1.486211 AGGAACGGAGGGAGTACATG 58.514 55.000 0.00 0.00 0.00 3.21
6351 6967 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
6352 6968 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
6353 6969 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
6354 6970 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
6355 6971 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
6356 6972 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
6357 6973 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
6358 6974 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
6359 6975 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
6375 6991 9.383519 CCATAGTGCAATCTCTAAAAAGACTTA 57.616 33.333 0.00 0.00 0.00 2.24
6376 6992 8.103305 TCCATAGTGCAATCTCTAAAAAGACTT 58.897 33.333 0.00 0.00 0.00 3.01
6377 6993 7.550906 GTCCATAGTGCAATCTCTAAAAAGACT 59.449 37.037 0.00 0.00 0.00 3.24
6378 6994 7.550906 AGTCCATAGTGCAATCTCTAAAAAGAC 59.449 37.037 0.00 0.00 0.00 3.01
6379 6995 7.624549 AGTCCATAGTGCAATCTCTAAAAAGA 58.375 34.615 0.00 0.00 0.00 2.52
6380 6996 7.856145 AGTCCATAGTGCAATCTCTAAAAAG 57.144 36.000 0.00 0.00 0.00 2.27
6381 6997 8.318412 TGTAGTCCATAGTGCAATCTCTAAAAA 58.682 33.333 0.00 0.00 0.00 1.94
6382 6998 7.847096 TGTAGTCCATAGTGCAATCTCTAAAA 58.153 34.615 0.00 0.00 0.00 1.52
6383 6999 7.418337 TGTAGTCCATAGTGCAATCTCTAAA 57.582 36.000 0.00 0.00 0.00 1.85
6384 7000 7.603180 ATGTAGTCCATAGTGCAATCTCTAA 57.397 36.000 0.00 0.00 29.82 2.10
6385 7001 7.094762 CGTATGTAGTCCATAGTGCAATCTCTA 60.095 40.741 0.00 0.00 36.71 2.43
6386 7002 6.294231 CGTATGTAGTCCATAGTGCAATCTCT 60.294 42.308 0.00 0.00 36.71 3.10
6387 7003 5.859114 CGTATGTAGTCCATAGTGCAATCTC 59.141 44.000 0.00 0.00 36.71 2.75
6388 7004 5.279006 CCGTATGTAGTCCATAGTGCAATCT 60.279 44.000 0.00 0.00 36.71 2.40
6389 7005 4.923871 CCGTATGTAGTCCATAGTGCAATC 59.076 45.833 0.00 0.00 36.71 2.67
6390 7006 4.587262 TCCGTATGTAGTCCATAGTGCAAT 59.413 41.667 0.00 0.00 36.71 3.56
6391 7007 3.955551 TCCGTATGTAGTCCATAGTGCAA 59.044 43.478 0.00 0.00 36.71 4.08
6392 7008 3.558033 TCCGTATGTAGTCCATAGTGCA 58.442 45.455 0.00 0.00 36.71 4.57
6393 7009 3.612004 GCTCCGTATGTAGTCCATAGTGC 60.612 52.174 0.00 0.00 36.71 4.40
6394 7010 3.568430 TGCTCCGTATGTAGTCCATAGTG 59.432 47.826 0.00 0.00 36.71 2.74
6395 7011 3.828921 TGCTCCGTATGTAGTCCATAGT 58.171 45.455 0.00 0.00 36.71 2.12
6396 7012 4.848562 TTGCTCCGTATGTAGTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
6397 7013 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
6398 7014 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
6399 7015 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
6400 7016 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
6401 7017 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
6402 7018 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
6403 7019 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
6404 7020 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
6405 7021 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
6406 7022 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
6407 7023 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
6408 7024 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
6409 7025 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
6410 7026 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
6411 7027 9.282569 AGAATATAGATTCACTCATTTTGCTCC 57.717 33.333 12.39 0.00 43.51 4.70
6442 7058 9.875691 AACTACGTACGGATGTATATAGACATA 57.124 33.333 21.06 0.00 40.18 2.29
6443 7059 8.783833 AACTACGTACGGATGTATATAGACAT 57.216 34.615 21.06 12.70 42.82 3.06
6444 7060 8.498358 CAAACTACGTACGGATGTATATAGACA 58.502 37.037 21.06 2.07 32.11 3.41
6445 7061 8.499162 ACAAACTACGTACGGATGTATATAGAC 58.501 37.037 21.06 0.00 32.11 2.59
6446 7062 8.607441 ACAAACTACGTACGGATGTATATAGA 57.393 34.615 21.06 0.00 32.11 1.98
6447 7063 9.964253 CTACAAACTACGTACGGATGTATATAG 57.036 37.037 21.06 11.46 32.11 1.31
6448 7064 9.489084 ACTACAAACTACGTACGGATGTATATA 57.511 33.333 21.06 0.00 32.11 0.86
6449 7065 8.285394 CACTACAAACTACGTACGGATGTATAT 58.715 37.037 21.06 5.66 32.11 0.86
6450 7066 7.254761 CCACTACAAACTACGTACGGATGTATA 60.255 40.741 21.06 0.30 32.11 1.47
6451 7067 6.458751 CCACTACAAACTACGTACGGATGTAT 60.459 42.308 21.06 4.88 32.11 2.29
6452 7068 5.163764 CCACTACAAACTACGTACGGATGTA 60.164 44.000 21.06 15.28 0.00 2.29
6453 7069 4.379813 CCACTACAAACTACGTACGGATGT 60.380 45.833 21.06 14.94 0.00 3.06
6454 7070 4.100529 CCACTACAAACTACGTACGGATG 58.899 47.826 21.06 9.21 0.00 3.51
6455 7071 4.009675 TCCACTACAAACTACGTACGGAT 58.990 43.478 21.06 1.34 0.00 4.18
6456 7072 3.407698 TCCACTACAAACTACGTACGGA 58.592 45.455 21.06 10.81 0.00 4.69
6457 7073 3.829886 TCCACTACAAACTACGTACGG 57.170 47.619 21.06 5.00 0.00 4.02
6458 7074 5.634896 AGATTCCACTACAAACTACGTACG 58.365 41.667 15.01 15.01 0.00 3.67
6459 7075 7.880059 AAAGATTCCACTACAAACTACGTAC 57.120 36.000 0.00 0.00 0.00 3.67
6460 7076 9.630098 CTTAAAGATTCCACTACAAACTACGTA 57.370 33.333 0.00 0.00 0.00 3.57
6461 7077 8.362639 TCTTAAAGATTCCACTACAAACTACGT 58.637 33.333 0.00 0.00 0.00 3.57
6462 7078 8.752766 TCTTAAAGATTCCACTACAAACTACG 57.247 34.615 0.00 0.00 0.00 3.51
6484 7100 9.780186 CCTCCGTTCCTAAATATAAATCTTCTT 57.220 33.333 0.00 0.00 0.00 2.52
6485 7101 8.376270 CCCTCCGTTCCTAAATATAAATCTTCT 58.624 37.037 0.00 0.00 0.00 2.85
6486 7102 8.373220 TCCCTCCGTTCCTAAATATAAATCTTC 58.627 37.037 0.00 0.00 0.00 2.87
6487 7103 8.271398 TCCCTCCGTTCCTAAATATAAATCTT 57.729 34.615 0.00 0.00 0.00 2.40
6488 7104 7.513091 ACTCCCTCCGTTCCTAAATATAAATCT 59.487 37.037 0.00 0.00 0.00 2.40
6489 7105 7.677892 ACTCCCTCCGTTCCTAAATATAAATC 58.322 38.462 0.00 0.00 0.00 2.17
6490 7106 7.628501 ACTCCCTCCGTTCCTAAATATAAAT 57.371 36.000 0.00 0.00 0.00 1.40
6491 7107 7.786464 ACTACTCCCTCCGTTCCTAAATATAAA 59.214 37.037 0.00 0.00 0.00 1.40
6492 7108 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
6493 7109 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
6494 7110 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
6495 7111 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
6496 7112 3.959449 GACTACTCCCTCCGTTCCTAAAT 59.041 47.826 0.00 0.00 0.00 1.40
6497 7113 3.245371 TGACTACTCCCTCCGTTCCTAAA 60.245 47.826 0.00 0.00 0.00 1.85
6498 7114 2.309755 TGACTACTCCCTCCGTTCCTAA 59.690 50.000 0.00 0.00 0.00 2.69
6499 7115 1.918262 TGACTACTCCCTCCGTTCCTA 59.082 52.381 0.00 0.00 0.00 2.94
6500 7116 0.702902 TGACTACTCCCTCCGTTCCT 59.297 55.000 0.00 0.00 0.00 3.36
6501 7117 1.409427 CATGACTACTCCCTCCGTTCC 59.591 57.143 0.00 0.00 0.00 3.62
6502 7118 2.100989 ACATGACTACTCCCTCCGTTC 58.899 52.381 0.00 0.00 0.00 3.95
6503 7119 2.233305 ACATGACTACTCCCTCCGTT 57.767 50.000 0.00 0.00 0.00 4.44
6504 7120 2.241685 AGTACATGACTACTCCCTCCGT 59.758 50.000 0.00 0.00 36.27 4.69
6505 7121 2.619177 CAGTACATGACTACTCCCTCCG 59.381 54.545 0.00 0.00 35.64 4.63
6506 7122 2.959707 CCAGTACATGACTACTCCCTCC 59.040 54.545 0.00 0.00 35.64 4.30
6507 7123 2.362717 GCCAGTACATGACTACTCCCTC 59.637 54.545 0.00 0.00 35.64 4.30
6508 7124 2.292257 TGCCAGTACATGACTACTCCCT 60.292 50.000 0.00 0.00 35.64 4.20
6509 7125 2.108168 TGCCAGTACATGACTACTCCC 58.892 52.381 0.00 0.00 35.64 4.30
6567 7183 0.321387 ACCACTCAGTCAGCAGCATG 60.321 55.000 0.00 0.00 40.87 4.06
6568 7184 0.036577 GACCACTCAGTCAGCAGCAT 60.037 55.000 0.00 0.00 36.73 3.79
6569 7185 1.368950 GACCACTCAGTCAGCAGCA 59.631 57.895 0.00 0.00 36.73 4.41
6570 7186 0.250038 TTGACCACTCAGTCAGCAGC 60.250 55.000 0.00 0.00 46.90 5.25
6571 7187 2.141517 CTTTGACCACTCAGTCAGCAG 58.858 52.381 0.00 0.00 46.90 4.24
6572 7188 1.762370 TCTTTGACCACTCAGTCAGCA 59.238 47.619 0.00 0.00 46.90 4.41
6573 7189 2.533266 TCTTTGACCACTCAGTCAGC 57.467 50.000 0.00 0.00 46.90 4.26
6574 7190 3.007290 TCCATCTTTGACCACTCAGTCAG 59.993 47.826 0.00 0.00 46.90 3.51
6575 7191 2.972021 TCCATCTTTGACCACTCAGTCA 59.028 45.455 0.00 0.00 44.89 3.41
6576 7192 3.685139 TCCATCTTTGACCACTCAGTC 57.315 47.619 0.00 0.00 37.28 3.51
6577 7193 3.584406 TCATCCATCTTTGACCACTCAGT 59.416 43.478 0.00 0.00 0.00 3.41
6578 7194 4.190001 CTCATCCATCTTTGACCACTCAG 58.810 47.826 0.00 0.00 0.00 3.35
6579 7195 3.584406 ACTCATCCATCTTTGACCACTCA 59.416 43.478 0.00 0.00 0.00 3.41
6580 7196 4.213564 ACTCATCCATCTTTGACCACTC 57.786 45.455 0.00 0.00 0.00 3.51
6581 7197 5.026121 TCTACTCATCCATCTTTGACCACT 58.974 41.667 0.00 0.00 0.00 4.00
6582 7198 5.344743 TCTACTCATCCATCTTTGACCAC 57.655 43.478 0.00 0.00 0.00 4.16
6583 7199 4.141846 GCTCTACTCATCCATCTTTGACCA 60.142 45.833 0.00 0.00 0.00 4.02
6584 7200 4.376146 GCTCTACTCATCCATCTTTGACC 58.624 47.826 0.00 0.00 0.00 4.02
6585 7201 4.047822 CGCTCTACTCATCCATCTTTGAC 58.952 47.826 0.00 0.00 0.00 3.18
6586 7202 3.491619 GCGCTCTACTCATCCATCTTTGA 60.492 47.826 0.00 0.00 0.00 2.69
6587 7203 2.799412 GCGCTCTACTCATCCATCTTTG 59.201 50.000 0.00 0.00 0.00 2.77
6588 7204 2.432146 TGCGCTCTACTCATCCATCTTT 59.568 45.455 9.73 0.00 0.00 2.52
6589 7205 2.034878 TGCGCTCTACTCATCCATCTT 58.965 47.619 9.73 0.00 0.00 2.40
6590 7206 1.697284 TGCGCTCTACTCATCCATCT 58.303 50.000 9.73 0.00 0.00 2.90
6591 7207 2.335752 CATGCGCTCTACTCATCCATC 58.664 52.381 9.73 0.00 0.00 3.51
6592 7208 1.001746 CCATGCGCTCTACTCATCCAT 59.998 52.381 9.73 0.00 0.00 3.41
6593 7209 0.390492 CCATGCGCTCTACTCATCCA 59.610 55.000 9.73 0.00 0.00 3.41
6594 7210 0.390860 ACCATGCGCTCTACTCATCC 59.609 55.000 9.73 0.00 0.00 3.51
6595 7211 2.231215 AACCATGCGCTCTACTCATC 57.769 50.000 9.73 0.00 0.00 2.92
6596 7212 2.283298 CAAACCATGCGCTCTACTCAT 58.717 47.619 9.73 0.00 0.00 2.90
6735 7351 2.267426 CACAGACAGACACACGAACAA 58.733 47.619 0.00 0.00 0.00 2.83
6736 7352 1.203758 ACACAGACAGACACACGAACA 59.796 47.619 0.00 0.00 0.00 3.18
6737 7353 1.922570 ACACAGACAGACACACGAAC 58.077 50.000 0.00 0.00 0.00 3.95
6866 7530 0.895530 TCATTCTCTCGACCCACACC 59.104 55.000 0.00 0.00 0.00 4.16
6895 7559 2.692557 GTCTCCTGATGCTAGCAGAAGA 59.307 50.000 23.89 16.30 35.39 2.87
6897 7561 1.406898 CGTCTCCTGATGCTAGCAGAA 59.593 52.381 23.89 12.46 35.39 3.02



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.