Multiple sequence alignment - TraesCS7D01G296800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G296800 chr7D 100.000 5860 0 0 1 5860 373657372 373651513 0.000000e+00 10822.0
1 TraesCS7D01G296800 chr7D 90.466 451 37 5 1007 1455 552932788 552933234 1.820000e-164 590.0
2 TraesCS7D01G296800 chr7D 81.533 574 91 8 52 612 587736167 587735596 5.350000e-125 459.0
3 TraesCS7D01G296800 chr7D 79.253 241 36 11 3161 3398 373654041 373653812 7.860000e-34 156.0
4 TraesCS7D01G296800 chr7D 79.253 241 36 10 3332 3561 373654212 373653975 7.860000e-34 156.0
5 TraesCS7D01G296800 chr7A 92.982 3021 159 29 784 3770 419780824 419777823 0.000000e+00 4355.0
6 TraesCS7D01G296800 chr7A 87.730 2396 172 57 3316 5656 419778029 419775701 0.000000e+00 2684.0
7 TraesCS7D01G296800 chr7A 87.821 468 35 6 46 504 419933017 419932563 4.020000e-146 529.0
8 TraesCS7D01G296800 chr7A 81.791 335 47 11 3565 3894 419778450 419778125 9.680000e-68 268.0
9 TraesCS7D01G296800 chr7A 82.237 304 39 15 404 696 119735949 119736248 1.260000e-61 248.0
10 TraesCS7D01G296800 chr7A 78.682 258 42 8 3315 3561 419778451 419778196 6.080000e-35 159.0
11 TraesCS7D01G296800 chr7A 86.806 144 15 4 3585 3725 419777587 419777445 2.190000e-34 158.0
12 TraesCS7D01G296800 chr7A 79.654 231 23 9 5651 5858 419768535 419768306 1.700000e-30 145.0
13 TraesCS7D01G296800 chr7A 85.714 133 15 4 3161 3290 419778262 419778131 2.850000e-28 137.0
14 TraesCS7D01G296800 chr7B 94.696 1659 69 10 769 2415 368808439 368806788 0.000000e+00 2558.0
15 TraesCS7D01G296800 chr7B 88.147 2067 138 46 3316 5354 368805602 368803615 0.000000e+00 2361.0
16 TraesCS7D01G296800 chr7B 92.095 1341 82 16 2442 3770 368806725 368805397 0.000000e+00 1868.0
17 TraesCS7D01G296800 chr7B 82.672 479 32 20 5347 5789 368803400 368802937 1.540000e-100 377.0
18 TraesCS7D01G296800 chr7B 82.315 311 43 9 3585 3890 368806000 368805697 5.830000e-65 259.0
19 TraesCS7D01G296800 chr7B 81.533 287 36 15 3189 3468 368805300 368805024 2.750000e-53 220.0
20 TraesCS7D01G296800 chr7B 79.352 247 36 8 3328 3561 368806008 368805764 6.080000e-35 159.0
21 TraesCS7D01G296800 chr7B 85.714 133 15 4 3161 3290 368805830 368805699 2.850000e-28 137.0
22 TraesCS7D01G296800 chr7B 85.271 129 17 1 3164 3290 368805583 368805455 1.330000e-26 132.0
23 TraesCS7D01G296800 chr2A 87.027 1056 102 17 2958 3999 731540703 731541737 0.000000e+00 1158.0
24 TraesCS7D01G296800 chr2A 83.163 392 48 8 1590 1978 748876690 748876314 5.620000e-90 342.0
25 TraesCS7D01G296800 chr2A 88.571 280 29 2 2672 2951 731540378 731540654 2.620000e-88 337.0
26 TraesCS7D01G296800 chr2A 81.210 314 48 9 3164 3469 731541322 731541632 5.870000e-60 243.0
27 TraesCS7D01G296800 chr2A 86.420 162 19 3 3567 3725 731541478 731541639 2.170000e-39 174.0
28 TraesCS7D01G296800 chr2A 77.606 259 43 9 3316 3561 731541302 731541558 6.120000e-30 143.0
29 TraesCS7D01G296800 chr5B 84.280 528 72 9 53 569 593231022 593231549 6.780000e-139 505.0
30 TraesCS7D01G296800 chr5B 76.096 502 80 16 193 680 606536789 606537264 5.910000e-55 226.0
31 TraesCS7D01G296800 chr5D 80.323 681 108 21 54 715 328575816 328575143 5.280000e-135 492.0
32 TraesCS7D01G296800 chr2D 82.253 586 85 15 52 622 515830437 515829856 6.830000e-134 488.0
33 TraesCS7D01G296800 chr4A 79.909 662 116 13 52 697 4622969 4623629 2.470000e-128 470.0
34 TraesCS7D01G296800 chr1A 82.798 529 74 13 53 568 96313319 96313843 1.920000e-124 457.0
35 TraesCS7D01G296800 chr6A 81.552 580 77 16 1403 1977 490994212 490994766 8.950000e-123 451.0
36 TraesCS7D01G296800 chr4B 81.081 592 89 17 52 629 599824078 599823496 8.950000e-123 451.0
37 TraesCS7D01G296800 chr6B 78.390 671 127 15 52 708 482756412 482757078 2.530000e-113 420.0
38 TraesCS7D01G296800 chr3B 81.400 500 56 18 1403 1895 542642957 542642488 1.990000e-99 374.0
39 TraesCS7D01G296800 chr3B 77.711 166 20 13 5583 5739 790796149 790795992 1.050000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G296800 chr7D 373651513 373657372 5859 True 3711.333333 10822 86.168667 1 5860 3 chr7D.!!$R2 5859
1 TraesCS7D01G296800 chr7D 587735596 587736167 571 True 459.000000 459 81.533000 52 612 1 chr7D.!!$R1 560
2 TraesCS7D01G296800 chr7A 419775701 419780824 5123 True 1293.500000 4355 85.617500 784 5656 6 chr7A.!!$R3 4872
3 TraesCS7D01G296800 chr7B 368802937 368808439 5502 True 896.777778 2558 85.755000 769 5789 9 chr7B.!!$R1 5020
4 TraesCS7D01G296800 chr2A 731540378 731541737 1359 False 411.000000 1158 84.166800 2672 3999 5 chr2A.!!$F1 1327
5 TraesCS7D01G296800 chr5B 593231022 593231549 527 False 505.000000 505 84.280000 53 569 1 chr5B.!!$F1 516
6 TraesCS7D01G296800 chr5D 328575143 328575816 673 True 492.000000 492 80.323000 54 715 1 chr5D.!!$R1 661
7 TraesCS7D01G296800 chr2D 515829856 515830437 581 True 488.000000 488 82.253000 52 622 1 chr2D.!!$R1 570
8 TraesCS7D01G296800 chr4A 4622969 4623629 660 False 470.000000 470 79.909000 52 697 1 chr4A.!!$F1 645
9 TraesCS7D01G296800 chr1A 96313319 96313843 524 False 457.000000 457 82.798000 53 568 1 chr1A.!!$F1 515
10 TraesCS7D01G296800 chr6A 490994212 490994766 554 False 451.000000 451 81.552000 1403 1977 1 chr6A.!!$F1 574
11 TraesCS7D01G296800 chr4B 599823496 599824078 582 True 451.000000 451 81.081000 52 629 1 chr4B.!!$R1 577
12 TraesCS7D01G296800 chr6B 482756412 482757078 666 False 420.000000 420 78.390000 52 708 1 chr6B.!!$F1 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.107312 CATGGGAGAAGGTGCTGGAG 60.107 60.0 0.00 0.00 0.00 3.86 F
714 741 0.108186 CGACTGCTGCCCTACATGAA 60.108 55.0 0.00 0.00 0.00 2.57 F
725 752 0.179171 CTACATGAACGTCGCGAGGT 60.179 55.0 27.26 27.26 0.00 3.85 F
2566 2663 0.397941 CTGAGCACCTCCAGTTCCAA 59.602 55.0 0.00 0.00 0.00 3.53 F
2883 2980 0.309922 GATGGCTGCAATGATGGACG 59.690 55.0 0.50 0.00 0.00 4.79 F
3302 3450 0.321298 TCCACTTACGCCCTTGCTTC 60.321 55.0 0.00 0.00 34.43 3.86 F
3303 3451 0.321653 CCACTTACGCCCTTGCTTCT 60.322 55.0 0.00 0.00 34.43 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1896 1935 0.323629 GTTGTACACTGCCCCAGCTA 59.676 55.000 0.00 0.00 40.80 3.32 R
2631 2728 0.024873 GCGCACAACAAAACAACAGC 59.975 50.000 0.30 0.00 0.00 4.40 R
2724 2821 3.850122 TTGTCCTCATACTGTGTCTCG 57.150 47.619 0.00 0.00 0.00 4.04 R
4056 4465 1.021202 TGAACTGCCAAAACGTCTGG 58.979 50.000 11.42 11.42 36.99 3.86 R
4787 5210 0.581529 CAAACTCGTTCTGCGCTTCA 59.418 50.000 9.73 0.00 41.07 3.02 R
4793 5216 1.136611 CGTAGCACAAACTCGTTCTGC 60.137 52.381 4.92 4.92 0.00 4.26 R
5234 5658 2.791383 TTTCTGAAAACATGCCGTGG 57.209 45.000 0.00 0.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.071874 TGTTAAGCATGGGAGAAGGTG 57.928 47.619 0.00 0.00 0.00 4.00
21 22 1.745653 GTTAAGCATGGGAGAAGGTGC 59.254 52.381 0.00 0.00 37.84 5.01
22 23 3.832175 AGCATGGGAGAAGGTGCT 58.168 55.556 0.00 0.00 42.66 4.40
23 24 0.323178 AAGCATGGGAGAAGGTGCTG 60.323 55.000 0.00 0.00 46.37 4.41
24 25 1.751927 GCATGGGAGAAGGTGCTGG 60.752 63.158 0.00 0.00 34.85 4.85
25 26 1.993653 CATGGGAGAAGGTGCTGGA 59.006 57.895 0.00 0.00 0.00 3.86
26 27 0.107312 CATGGGAGAAGGTGCTGGAG 60.107 60.000 0.00 0.00 0.00 3.86
27 28 0.548682 ATGGGAGAAGGTGCTGGAGT 60.549 55.000 0.00 0.00 0.00 3.85
28 29 0.116342 TGGGAGAAGGTGCTGGAGTA 59.884 55.000 0.00 0.00 0.00 2.59
29 30 1.276622 GGGAGAAGGTGCTGGAGTAA 58.723 55.000 0.00 0.00 0.00 2.24
30 31 1.066071 GGGAGAAGGTGCTGGAGTAAC 60.066 57.143 0.00 0.00 0.00 2.50
31 32 1.066071 GGAGAAGGTGCTGGAGTAACC 60.066 57.143 0.00 0.00 39.54 2.85
32 33 1.903183 GAGAAGGTGCTGGAGTAACCT 59.097 52.381 0.00 0.00 46.40 3.50
35 36 2.568623 AGGTGCTGGAGTAACCTTTG 57.431 50.000 0.00 0.00 41.65 2.77
36 37 2.054799 AGGTGCTGGAGTAACCTTTGA 58.945 47.619 0.00 0.00 41.65 2.69
37 38 2.441750 AGGTGCTGGAGTAACCTTTGAA 59.558 45.455 0.00 0.00 41.65 2.69
38 39 3.117663 AGGTGCTGGAGTAACCTTTGAAA 60.118 43.478 0.00 0.00 41.65 2.69
39 40 3.634910 GGTGCTGGAGTAACCTTTGAAAA 59.365 43.478 0.00 0.00 39.86 2.29
40 41 4.261614 GGTGCTGGAGTAACCTTTGAAAAG 60.262 45.833 0.00 0.00 39.86 2.27
80 81 7.712264 TGAGAAACACCTGCAATTTTATTTG 57.288 32.000 0.00 0.00 0.00 2.32
107 108 8.997621 ACTCATAACAATTACAGATACGTTGT 57.002 30.769 0.00 0.00 34.74 3.32
208 215 6.403049 TCACGGTATCAATCTCTGCTAAAAA 58.597 36.000 0.00 0.00 0.00 1.94
248 256 9.985730 ACTTTGATAAAGAGATTGCAATTGAAA 57.014 25.926 14.33 5.21 41.02 2.69
275 288 2.169832 ACAATGTTGTCACTCTCCGG 57.830 50.000 0.00 0.00 36.50 5.14
286 299 3.927142 GTCACTCTCCGGACAAACATTAG 59.073 47.826 0.00 0.00 34.22 1.73
314 327 3.380142 TGATTTTTGAAAGCGCCTTGAC 58.620 40.909 2.29 0.00 0.00 3.18
387 401 3.406764 GGATGATCCCATAGAAGTGCAC 58.593 50.000 9.40 9.40 32.09 4.57
388 402 3.406764 GATGATCCCATAGAAGTGCACC 58.593 50.000 14.63 0.00 32.09 5.01
494 512 6.716628 ACACACCAACATAAACTCATCAGATT 59.283 34.615 0.00 0.00 0.00 2.40
539 557 9.261035 AGGACAGAAAACTCTCTAATCTTATGA 57.739 33.333 0.00 0.00 0.00 2.15
562 581 6.535150 TGACACTGTCAAAAGAACAAGAGTAG 59.465 38.462 9.54 0.00 39.78 2.57
566 585 8.879759 CACTGTCAAAAGAACAAGAGTAGTTTA 58.120 33.333 0.00 0.00 0.00 2.01
600 626 8.301730 AGTTTGATTACTAAACGATGACGAAA 57.698 30.769 0.00 0.00 41.61 3.46
602 628 9.537848 GTTTGATTACTAAACGATGACGAAAAT 57.462 29.630 0.00 0.00 42.66 1.82
621 647 7.387180 CGAAAATCGTAGAACTTCTGAAGATG 58.613 38.462 23.36 7.01 43.58 2.90
626 652 4.437524 CGTAGAACTTCTGAAGATGCGAGA 60.438 45.833 23.36 0.13 0.00 4.04
629 655 4.402155 AGAACTTCTGAAGATGCGAGATCT 59.598 41.667 23.36 0.00 0.00 2.75
630 656 4.734398 ACTTCTGAAGATGCGAGATCTT 57.266 40.909 23.36 9.25 40.72 2.40
639 665 5.083533 AGATGCGAGATCTTCAATATCCC 57.916 43.478 0.00 0.00 0.00 3.85
640 666 3.303881 TGCGAGATCTTCAATATCCCG 57.696 47.619 0.00 0.00 0.00 5.14
641 667 2.029020 TGCGAGATCTTCAATATCCCGG 60.029 50.000 0.00 0.00 0.00 5.73
642 668 2.028930 GCGAGATCTTCAATATCCCGGT 60.029 50.000 0.00 0.00 0.00 5.28
651 678 2.976185 TCAATATCCCGGTGCCAAGATA 59.024 45.455 0.00 0.00 0.00 1.98
660 687 0.393537 GTGCCAAGATAGCAGCCAGT 60.394 55.000 0.00 0.00 41.87 4.00
685 712 2.180674 GGGACCAACAATTCTCGGC 58.819 57.895 0.00 0.00 0.00 5.54
686 713 1.644786 GGGACCAACAATTCTCGGCG 61.645 60.000 0.00 0.00 0.00 6.46
687 714 0.672401 GGACCAACAATTCTCGGCGA 60.672 55.000 10.14 10.14 0.00 5.54
688 715 0.442699 GACCAACAATTCTCGGCGAC 59.557 55.000 4.99 0.00 0.00 5.19
689 716 0.953960 ACCAACAATTCTCGGCGACC 60.954 55.000 4.99 0.00 0.00 4.79
711 738 2.187946 GCGACTGCTGCCCTACAT 59.812 61.111 0.00 0.00 38.39 2.29
712 739 2.176273 GCGACTGCTGCCCTACATG 61.176 63.158 0.00 0.00 38.39 3.21
713 740 1.517361 CGACTGCTGCCCTACATGA 59.483 57.895 0.00 0.00 0.00 3.07
714 741 0.108186 CGACTGCTGCCCTACATGAA 60.108 55.000 0.00 0.00 0.00 2.57
715 742 1.373570 GACTGCTGCCCTACATGAAC 58.626 55.000 0.00 0.00 0.00 3.18
716 743 0.391661 ACTGCTGCCCTACATGAACG 60.392 55.000 0.00 0.00 0.00 3.95
717 744 0.391661 CTGCTGCCCTACATGAACGT 60.392 55.000 0.00 0.00 0.00 3.99
718 745 0.391130 TGCTGCCCTACATGAACGTC 60.391 55.000 0.00 0.00 0.00 4.34
719 746 1.421410 GCTGCCCTACATGAACGTCG 61.421 60.000 0.00 0.00 0.00 5.12
720 747 1.421410 CTGCCCTACATGAACGTCGC 61.421 60.000 0.00 0.00 0.00 5.19
721 748 2.514013 GCCCTACATGAACGTCGCG 61.514 63.158 0.00 0.00 0.00 5.87
722 749 1.138036 CCCTACATGAACGTCGCGA 59.862 57.895 3.71 3.71 0.00 5.87
723 750 0.866061 CCCTACATGAACGTCGCGAG 60.866 60.000 10.24 6.53 0.00 5.03
724 751 0.866061 CCTACATGAACGTCGCGAGG 60.866 60.000 25.84 25.84 0.00 4.63
725 752 0.179171 CTACATGAACGTCGCGAGGT 60.179 55.000 27.26 27.26 0.00 3.85
726 753 0.455464 TACATGAACGTCGCGAGGTG 60.455 55.000 32.26 22.13 0.00 4.00
727 754 1.443702 CATGAACGTCGCGAGGTGA 60.444 57.895 32.26 22.48 0.00 4.02
728 755 1.006825 CATGAACGTCGCGAGGTGAA 61.007 55.000 32.26 23.47 0.00 3.18
729 756 1.007336 ATGAACGTCGCGAGGTGAAC 61.007 55.000 32.26 24.68 0.00 3.18
730 757 2.704193 GAACGTCGCGAGGTGAACG 61.704 63.158 32.26 22.68 0.00 3.95
731 758 3.474230 AACGTCGCGAGGTGAACGT 62.474 57.895 32.26 23.34 33.85 3.99
732 759 2.116736 AACGTCGCGAGGTGAACGTA 62.117 55.000 32.26 0.00 32.85 3.57
733 760 2.142239 CGTCGCGAGGTGAACGTAC 61.142 63.158 20.10 0.00 0.00 3.67
734 761 1.208614 GTCGCGAGGTGAACGTACT 59.791 57.895 10.24 0.00 0.00 2.73
735 762 1.063951 GTCGCGAGGTGAACGTACTG 61.064 60.000 10.24 0.00 0.00 2.74
736 763 2.434134 CGCGAGGTGAACGTACTGC 61.434 63.158 0.00 0.00 0.00 4.40
754 781 7.736447 CGTACTGCGTACTACTATAATCATCA 58.264 38.462 14.06 0.00 36.93 3.07
755 782 8.388853 CGTACTGCGTACTACTATAATCATCAT 58.611 37.037 14.06 0.00 36.93 2.45
756 783 9.705471 GTACTGCGTACTACTATAATCATCATC 57.295 37.037 10.35 0.00 36.25 2.92
757 784 7.465173 ACTGCGTACTACTATAATCATCATCG 58.535 38.462 0.00 0.00 0.00 3.84
758 785 6.782150 TGCGTACTACTATAATCATCATCGG 58.218 40.000 0.00 0.00 0.00 4.18
759 786 6.373495 TGCGTACTACTATAATCATCATCGGT 59.627 38.462 0.00 0.00 0.00 4.69
760 787 7.094506 TGCGTACTACTATAATCATCATCGGTT 60.095 37.037 0.00 0.00 0.00 4.44
761 788 7.754027 GCGTACTACTATAATCATCATCGGTTT 59.246 37.037 0.00 0.00 0.00 3.27
762 789 9.275231 CGTACTACTATAATCATCATCGGTTTC 57.725 37.037 0.00 0.00 0.00 2.78
763 790 9.570488 GTACTACTATAATCATCATCGGTTTCC 57.430 37.037 0.00 0.00 0.00 3.13
764 791 8.190326 ACTACTATAATCATCATCGGTTTCCA 57.810 34.615 0.00 0.00 0.00 3.53
765 792 8.088981 ACTACTATAATCATCATCGGTTTCCAC 58.911 37.037 0.00 0.00 0.00 4.02
766 793 6.826668 ACTATAATCATCATCGGTTTCCACA 58.173 36.000 0.00 0.00 0.00 4.17
767 794 6.706270 ACTATAATCATCATCGGTTTCCACAC 59.294 38.462 0.00 0.00 0.00 3.82
778 805 3.186817 CGGTTTCCACACGTTTGCTATTA 59.813 43.478 0.00 0.00 0.00 0.98
1191 1218 2.504244 CTCGACGACCAAGACCGC 60.504 66.667 0.00 0.00 0.00 5.68
1240 1267 5.047306 CCCACCTTCCCATTTCTTTACTTTC 60.047 44.000 0.00 0.00 0.00 2.62
1280 1311 1.697082 TTGGTTGGTCGGTGGCAGTA 61.697 55.000 0.00 0.00 0.00 2.74
1462 1495 3.466836 CTGTGCTTACTGACTGGTCAAA 58.533 45.455 4.94 0.00 39.39 2.69
1469 1502 5.163652 GCTTACTGACTGGTCAAACTTGTTT 60.164 40.000 4.94 0.00 39.39 2.83
1576 1609 5.840715 TCGTGTATACTTTGTGTACCAACA 58.159 37.500 4.17 0.00 33.45 3.33
1631 1667 8.855110 TGATTGATTAAAAAGTGAACAGGCTAA 58.145 29.630 0.00 0.00 0.00 3.09
1645 1681 7.378728 GTGAACAGGCTAAATAGTGTTTGTTTC 59.621 37.037 0.00 0.00 33.30 2.78
1662 1698 7.427030 TGTTTGTTTCGACTGTAATTTTTCTCG 59.573 33.333 0.00 0.00 0.00 4.04
1665 1701 4.640805 TCGACTGTAATTTTTCTCGCAC 57.359 40.909 0.00 0.00 0.00 5.34
1671 1707 6.546395 ACTGTAATTTTTCTCGCACATCATC 58.454 36.000 0.00 0.00 0.00 2.92
1685 1721 1.133025 CATCATCCGTGAGTTTTGGCC 59.867 52.381 0.00 0.00 37.87 5.36
1896 1935 7.013655 GTGCCCATATCTGTTTTATTCATGACT 59.986 37.037 0.00 0.00 0.00 3.41
1919 1958 0.893270 TGGGGCAGTGTACAACATGC 60.893 55.000 16.66 16.66 34.31 4.06
2000 2040 2.175499 CAAAGATAGGAAGGCCATGGGA 59.825 50.000 15.13 0.00 36.29 4.37
2039 2079 4.589908 ACCCTCATTTGATACTGGACAAC 58.410 43.478 0.00 0.00 0.00 3.32
2048 2088 4.055360 TGATACTGGACAACTTCACAACG 58.945 43.478 0.00 0.00 0.00 4.10
2082 2122 6.652481 ACATACTTGAATCCTGAGTCACTTTG 59.348 38.462 0.00 0.00 34.95 2.77
2121 2162 9.072375 TCACCTGTTAAATGTTCATGTTCATTA 57.928 29.630 14.60 2.92 34.45 1.90
2152 2193 5.976534 TGCAGACAACAATTAACAATGTCAC 59.023 36.000 12.34 6.82 42.12 3.67
2153 2194 5.402270 GCAGACAACAATTAACAATGTCACC 59.598 40.000 12.34 2.96 42.12 4.02
2191 2232 9.921637 TCTATGTTTTTCATTGTAATTGTTCCC 57.078 29.630 0.00 0.00 37.91 3.97
2195 2236 4.775058 TTCATTGTAATTGTTCCCACCG 57.225 40.909 0.00 0.00 0.00 4.94
2197 2238 4.907809 TCATTGTAATTGTTCCCACCGTA 58.092 39.130 0.00 0.00 0.00 4.02
2221 2262 3.383505 GTGGCCTGGAAAGTAGTTTTGTT 59.616 43.478 3.32 0.00 0.00 2.83
2271 2312 6.480320 AGAATTACGATAAACATCCTGCAGTC 59.520 38.462 13.81 0.00 0.00 3.51
2282 2323 4.223700 ACATCCTGCAGTCTTCTGTAATGA 59.776 41.667 13.81 0.00 43.05 2.57
2368 2409 6.515832 TGCATATATACTCACACTGGAACTG 58.484 40.000 0.00 0.00 0.00 3.16
2372 2413 1.051812 ACTCACACTGGAACTGGAGG 58.948 55.000 0.00 0.00 0.00 4.30
2425 2502 2.945668 GCAAGGACTCTCTCTCTCTCTC 59.054 54.545 0.00 0.00 0.00 3.20
2427 2504 4.446371 CAAGGACTCTCTCTCTCTCTCTC 58.554 52.174 0.00 0.00 0.00 3.20
2429 2506 3.964031 AGGACTCTCTCTCTCTCTCTCTC 59.036 52.174 0.00 0.00 0.00 3.20
2431 2508 4.038642 GGACTCTCTCTCTCTCTCTCTCTC 59.961 54.167 0.00 0.00 0.00 3.20
2433 2510 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
2435 2512 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2437 2514 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2440 2519 3.963374 TCTCTCTCTCTCTCTCTCTCTGG 59.037 52.174 0.00 0.00 0.00 3.86
2461 2540 1.842052 TGCTCATGCATCCACACATT 58.158 45.000 0.00 0.00 45.31 2.71
2477 2558 6.942005 TCCACACATTCATACTCAAGAACAAT 59.058 34.615 0.00 0.00 0.00 2.71
2566 2663 0.397941 CTGAGCACCTCCAGTTCCAA 59.602 55.000 0.00 0.00 0.00 3.53
2578 2675 3.266772 TCCAGTTCCAATGGCTCTTATGT 59.733 43.478 0.00 0.00 37.76 2.29
2618 2715 2.022195 CTTGGCTGCTGTATGCTCATT 58.978 47.619 0.00 0.00 43.37 2.57
2631 2728 2.475818 TGCTCATTTGCTTTGTTGCTG 58.524 42.857 0.00 0.00 0.00 4.41
2648 2745 1.060986 GCTGCTGTTGTTTTGTTGTGC 59.939 47.619 0.00 0.00 0.00 4.57
2724 2821 2.706890 TGATGGTTTTCTCGTTAGCCC 58.293 47.619 0.00 0.00 0.00 5.19
2733 2830 1.880894 TCGTTAGCCCGAGACACAG 59.119 57.895 0.00 0.00 32.18 3.66
2742 2839 1.405821 CCCGAGACACAGTATGAGGAC 59.594 57.143 0.00 0.00 39.69 3.85
2770 2867 5.180271 TGTCCATTCGGAACTATGTAAACC 58.820 41.667 0.00 0.00 45.20 3.27
2775 2872 2.756760 TCGGAACTATGTAAACCGAGCT 59.243 45.455 0.00 0.00 45.87 4.09
2792 2889 4.335315 CCGAGCTGCTTTGGTATCATTTTA 59.665 41.667 2.53 0.00 0.00 1.52
2798 2895 8.367156 AGCTGCTTTGGTATCATTTTAAAGAAA 58.633 29.630 0.00 0.00 31.73 2.52
2883 2980 0.309922 GATGGCTGCAATGATGGACG 59.690 55.000 0.50 0.00 0.00 4.79
2887 2984 1.089920 GCTGCAATGATGGACGTCTT 58.910 50.000 16.46 3.14 0.00 3.01
2951 3048 4.808414 ACTATGTACTGAGCAGCTTTGA 57.192 40.909 0.00 0.00 0.00 2.69
2956 3095 2.409948 ACTGAGCAGCTTTGATACCC 57.590 50.000 0.00 0.00 0.00 3.69
3009 3151 2.627933 TCCTACCTGGTTAGTTGCCTT 58.372 47.619 3.84 0.00 37.07 4.35
3013 3155 1.702957 ACCTGGTTAGTTGCCTTGCTA 59.297 47.619 0.00 0.00 0.00 3.49
3029 3171 4.574013 CCTTGCTACAATGATGGTCTTCTC 59.426 45.833 0.00 0.00 0.00 2.87
3087 3229 7.185318 ACCCATTCAAAATTATGCATCTCAA 57.815 32.000 0.19 0.00 0.00 3.02
3105 3250 3.420893 TCAACAGCCTTGGTTATCTTGG 58.579 45.455 0.00 0.00 0.00 3.61
3109 3254 2.945668 CAGCCTTGGTTATCTTGGTAGC 59.054 50.000 0.00 0.00 0.00 3.58
3112 3257 4.412199 AGCCTTGGTTATCTTGGTAGCATA 59.588 41.667 0.00 0.00 0.00 3.14
3177 3322 5.152623 TCCTGTTTCTGTTTCAGATCGAT 57.847 39.130 0.00 0.00 40.39 3.59
3178 3323 5.551233 TCCTGTTTCTGTTTCAGATCGATT 58.449 37.500 0.00 0.00 40.39 3.34
3253 3400 8.399425 AGATGTACTTACTAATGAAGACACTCG 58.601 37.037 0.00 0.00 0.00 4.18
3292 3439 1.517257 CTGAGCGCCTCCACTTACG 60.517 63.158 2.29 0.00 0.00 3.18
3302 3450 0.321298 TCCACTTACGCCCTTGCTTC 60.321 55.000 0.00 0.00 34.43 3.86
3303 3451 0.321653 CCACTTACGCCCTTGCTTCT 60.322 55.000 0.00 0.00 34.43 2.85
3595 3752 3.565307 TGTTGCTTCCCTGTTTCTGATT 58.435 40.909 0.00 0.00 0.00 2.57
3756 3915 4.743057 ATTATTTTGCTCTGGCCCTTTC 57.257 40.909 0.00 0.00 37.74 2.62
3765 4174 2.036346 CTCTGGCCCTTTCCTGTTTTTG 59.964 50.000 0.00 0.00 0.00 2.44
3781 4190 9.179909 TCCTGTTTTTGATCTAAGTTTGTTACA 57.820 29.630 0.00 0.00 0.00 2.41
3800 4209 2.813226 AAAATGCGGAGGCTGCGGTA 62.813 55.000 29.27 10.55 38.82 4.02
3801 4210 2.608970 AAATGCGGAGGCTGCGGTAT 62.609 55.000 29.27 12.36 38.82 2.73
3836 4245 7.865889 TCGTTAACCTGATATATGTGCTTACTG 59.134 37.037 0.00 0.00 0.00 2.74
3920 4329 6.646240 TGCTTATTTGGCTTGAAGTTCATTTC 59.354 34.615 6.36 0.05 0.00 2.17
3989 4398 5.691754 CAGTTTTTATCCTCTGGTTGTTTGC 59.308 40.000 0.00 0.00 0.00 3.68
4051 4460 3.710165 GCATCCCTGGTTACTACTACCTT 59.290 47.826 0.00 0.00 36.60 3.50
4052 4461 4.202233 GCATCCCTGGTTACTACTACCTTC 60.202 50.000 0.00 0.00 36.60 3.46
4053 4462 4.680278 TCCCTGGTTACTACTACCTTCA 57.320 45.455 0.00 0.00 36.60 3.02
4054 4463 5.216665 TCCCTGGTTACTACTACCTTCAT 57.783 43.478 0.00 0.00 36.60 2.57
4055 4464 5.596763 TCCCTGGTTACTACTACCTTCATT 58.403 41.667 0.00 0.00 36.60 2.57
4056 4465 5.659971 TCCCTGGTTACTACTACCTTCATTC 59.340 44.000 0.00 0.00 36.60 2.67
4057 4466 5.163332 CCCTGGTTACTACTACCTTCATTCC 60.163 48.000 0.00 0.00 36.60 3.01
4058 4467 5.424252 CCTGGTTACTACTACCTTCATTCCA 59.576 44.000 0.00 0.00 36.60 3.53
4059 4468 6.407074 CCTGGTTACTACTACCTTCATTCCAG 60.407 46.154 0.00 0.00 36.60 3.86
4060 4469 6.258354 TGGTTACTACTACCTTCATTCCAGA 58.742 40.000 0.00 0.00 36.60 3.86
4061 4470 6.154021 TGGTTACTACTACCTTCATTCCAGAC 59.846 42.308 0.00 0.00 36.60 3.51
4062 4471 4.985538 ACTACTACCTTCATTCCAGACG 57.014 45.455 0.00 0.00 0.00 4.18
4063 4472 4.342359 ACTACTACCTTCATTCCAGACGT 58.658 43.478 0.00 0.00 0.00 4.34
4064 4473 4.771054 ACTACTACCTTCATTCCAGACGTT 59.229 41.667 0.00 0.00 0.00 3.99
4065 4474 4.618920 ACTACCTTCATTCCAGACGTTT 57.381 40.909 0.00 0.00 0.00 3.60
4066 4475 4.969484 ACTACCTTCATTCCAGACGTTTT 58.031 39.130 0.00 0.00 0.00 2.43
4067 4476 4.755123 ACTACCTTCATTCCAGACGTTTTG 59.245 41.667 0.00 0.00 0.00 2.44
4068 4477 2.884639 ACCTTCATTCCAGACGTTTTGG 59.115 45.455 12.46 12.46 37.04 3.28
4069 4478 2.351738 CCTTCATTCCAGACGTTTTGGC 60.352 50.000 13.54 0.00 35.62 4.52
4070 4479 1.974265 TCATTCCAGACGTTTTGGCA 58.026 45.000 13.54 5.22 35.62 4.92
4071 4480 1.879380 TCATTCCAGACGTTTTGGCAG 59.121 47.619 13.54 7.26 35.62 4.85
4072 4481 1.608590 CATTCCAGACGTTTTGGCAGT 59.391 47.619 13.54 1.94 35.62 4.40
4073 4482 1.757682 TTCCAGACGTTTTGGCAGTT 58.242 45.000 13.54 0.00 35.62 3.16
4074 4483 1.305201 TCCAGACGTTTTGGCAGTTC 58.695 50.000 13.54 0.00 35.62 3.01
4075 4484 1.021202 CCAGACGTTTTGGCAGTTCA 58.979 50.000 7.05 0.00 0.00 3.18
4076 4485 1.403679 CCAGACGTTTTGGCAGTTCAA 59.596 47.619 7.05 0.00 0.00 2.69
4096 4505 5.806286 TCAATTGAACTGTCAAAACGTCTC 58.194 37.500 5.45 0.00 46.66 3.36
4113 4522 9.490379 AAAACGTCTCATATTTAGAAACAGAGT 57.510 29.630 0.00 0.00 0.00 3.24
4154 4565 4.093556 GCTCTCGTTAAAGTTCATGGGAAG 59.906 45.833 0.00 0.00 32.62 3.46
4155 4566 4.000988 TCTCGTTAAAGTTCATGGGAAGC 58.999 43.478 0.00 0.00 32.62 3.86
4156 4567 3.745799 TCGTTAAAGTTCATGGGAAGCA 58.254 40.909 0.00 0.00 32.62 3.91
4157 4568 3.751175 TCGTTAAAGTTCATGGGAAGCAG 59.249 43.478 0.00 0.00 32.62 4.24
4158 4569 3.670627 CGTTAAAGTTCATGGGAAGCAGC 60.671 47.826 0.00 0.00 32.62 5.25
4159 4570 2.299326 AAAGTTCATGGGAAGCAGCT 57.701 45.000 0.00 0.00 32.62 4.24
4160 4571 2.299326 AAGTTCATGGGAAGCAGCTT 57.701 45.000 7.60 7.60 32.62 3.74
4161 4572 1.542492 AGTTCATGGGAAGCAGCTTG 58.458 50.000 13.91 0.00 32.62 4.01
4166 4577 2.699846 TCATGGGAAGCAGCTTGTTTTT 59.300 40.909 13.91 0.00 0.00 1.94
4217 4638 4.033932 GTGTTTGTGCTTGGAAATGAAACC 59.966 41.667 0.00 0.00 0.00 3.27
4237 4658 5.262588 ACCTGTCTTTGTTTGATTTGGTC 57.737 39.130 0.00 0.00 0.00 4.02
4549 4971 3.792401 TGTCACTCGTTGTTCTGATGTT 58.208 40.909 0.00 0.00 0.00 2.71
4553 4975 5.062308 GTCACTCGTTGTTCTGATGTTATCC 59.938 44.000 0.00 0.00 0.00 2.59
4561 4983 7.308589 CGTTGTTCTGATGTTATCCTCCTTTTT 60.309 37.037 0.00 0.00 0.00 1.94
4667 5089 1.339097 AGTTGCGACTCTACCAGGTT 58.661 50.000 0.00 0.00 0.00 3.50
4787 5210 1.202651 CGAGGAACTGTGGACCAAAGT 60.203 52.381 11.93 11.93 41.55 2.66
4793 5216 0.588252 CTGTGGACCAAAGTGAAGCG 59.412 55.000 3.13 0.00 0.00 4.68
5059 5482 4.431809 CAAGCAGTGAGAGTCTATCCTTG 58.568 47.826 0.00 0.00 0.00 3.61
5106 5529 5.065988 AGGGTGATATACGTTGTCAAATTGC 59.934 40.000 0.00 0.00 0.00 3.56
5177 5600 9.807921 TCCAAATAGTCCTCTTGAAACTTTAAT 57.192 29.630 0.00 0.00 0.00 1.40
5186 5609 9.074576 TCCTCTTGAAACTTTAATTAAACCCTC 57.925 33.333 6.54 4.51 0.00 4.30
5214 5638 8.535690 ACTAAGCAAACTGTAGAATACACTTC 57.464 34.615 0.00 0.00 46.14 3.01
5225 5649 6.805271 TGTAGAATACACTTCGAAGCTTACAC 59.195 38.462 24.86 12.41 46.14 2.90
5234 5658 8.015658 ACACTTCGAAGCTTACACAAAATATTC 58.984 33.333 24.86 0.00 0.00 1.75
5240 5664 4.102649 GCTTACACAAAATATTCCACGGC 58.897 43.478 0.00 0.00 0.00 5.68
5243 5667 4.108699 ACACAAAATATTCCACGGCATG 57.891 40.909 0.00 0.00 0.00 4.06
5257 5681 3.361644 CACGGCATGTTTTCAGAAAATCG 59.638 43.478 11.54 12.10 32.22 3.34
5270 5694 2.910977 AGAAAATCGTAACTCCTGGGGT 59.089 45.455 0.00 0.00 0.00 4.95
5271 5695 4.081309 CAGAAAATCGTAACTCCTGGGGTA 60.081 45.833 0.00 0.00 0.00 3.69
5426 6075 9.257428 AGGAATATTTAATGGAAACCGGTAAAA 57.743 29.630 8.00 0.69 0.00 1.52
5624 6305 3.780294 AGATTGTGGGGTCACTTATAGCA 59.220 43.478 0.00 0.00 43.94 3.49
5626 6307 1.206132 TGTGGGGTCACTTATAGCACG 59.794 52.381 0.00 0.00 43.94 5.34
5627 6308 0.177141 TGGGGTCACTTATAGCACGC 59.823 55.000 0.00 0.00 0.00 5.34
5630 6311 1.136305 GGGTCACTTATAGCACGCAGA 59.864 52.381 0.00 0.00 0.00 4.26
5684 6365 7.945033 ATTTTTCGTGCACAGTTTAATTCAT 57.055 28.000 18.64 0.00 0.00 2.57
5838 6519 8.838452 TTTTAATTCGCGAGTGTTTTCTAAAA 57.162 26.923 9.59 10.28 0.00 1.52
5839 6520 9.453325 TTTTAATTCGCGAGTGTTTTCTAAAAT 57.547 25.926 9.59 0.00 0.00 1.82
5840 6521 9.453325 TTTAATTCGCGAGTGTTTTCTAAAATT 57.547 25.926 9.59 3.95 0.00 1.82
5841 6522 7.548673 AATTCGCGAGTGTTTTCTAAAATTC 57.451 32.000 9.59 0.00 0.00 2.17
5842 6523 5.660629 TCGCGAGTGTTTTCTAAAATTCA 57.339 34.783 3.71 0.00 0.00 2.57
5843 6524 6.236017 TCGCGAGTGTTTTCTAAAATTCAT 57.764 33.333 3.71 0.00 0.00 2.57
5844 6525 6.077197 TCGCGAGTGTTTTCTAAAATTCATG 58.923 36.000 3.71 0.00 0.00 3.07
5845 6526 5.283717 CGCGAGTGTTTTCTAAAATTCATGG 59.716 40.000 0.00 0.00 0.00 3.66
5846 6527 5.572896 GCGAGTGTTTTCTAAAATTCATGGG 59.427 40.000 0.00 0.00 0.00 4.00
5847 6528 6.677913 CGAGTGTTTTCTAAAATTCATGGGT 58.322 36.000 0.00 0.00 0.00 4.51
5848 6529 7.145323 CGAGTGTTTTCTAAAATTCATGGGTT 58.855 34.615 0.00 0.00 0.00 4.11
5849 6530 7.651704 CGAGTGTTTTCTAAAATTCATGGGTTT 59.348 33.333 0.00 0.00 0.00 3.27
5850 6531 9.325198 GAGTGTTTTCTAAAATTCATGGGTTTT 57.675 29.630 11.76 11.76 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.745653 GCACCTTCTCCCATGCTTAAC 59.254 52.381 0.00 0.00 35.16 2.01
4 5 0.323178 CAGCACCTTCTCCCATGCTT 60.323 55.000 0.00 0.00 46.06 3.91
5 6 3.832175 AGCACCTTCTCCCATGCT 58.168 55.556 0.00 0.00 43.50 3.79
7 8 0.107312 CTCCAGCACCTTCTCCCATG 60.107 60.000 0.00 0.00 0.00 3.66
8 9 0.548682 ACTCCAGCACCTTCTCCCAT 60.549 55.000 0.00 0.00 0.00 4.00
9 10 0.116342 TACTCCAGCACCTTCTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
10 11 1.066071 GTTACTCCAGCACCTTCTCCC 60.066 57.143 0.00 0.00 0.00 4.30
11 12 1.066071 GGTTACTCCAGCACCTTCTCC 60.066 57.143 0.00 0.00 35.97 3.71
12 13 1.903183 AGGTTACTCCAGCACCTTCTC 59.097 52.381 0.00 0.00 37.70 2.87
13 14 2.031495 AGGTTACTCCAGCACCTTCT 57.969 50.000 0.00 0.00 37.70 2.85
14 15 2.861147 AAGGTTACTCCAGCACCTTC 57.139 50.000 5.33 0.00 46.12 3.46
16 17 2.054799 TCAAAGGTTACTCCAGCACCT 58.945 47.619 0.00 0.00 43.17 4.00
17 18 2.561478 TCAAAGGTTACTCCAGCACC 57.439 50.000 0.00 0.00 39.02 5.01
18 19 4.860072 CTTTTCAAAGGTTACTCCAGCAC 58.140 43.478 0.00 0.00 39.02 4.40
52 53 8.729805 ATAAAATTGCAGGTGTTTCTCAAAAA 57.270 26.923 0.00 0.00 0.00 1.94
53 54 8.729805 AATAAAATTGCAGGTGTTTCTCAAAA 57.270 26.923 0.00 0.00 0.00 2.44
54 55 8.610896 CAAATAAAATTGCAGGTGTTTCTCAAA 58.389 29.630 0.00 0.00 0.00 2.69
55 56 7.768120 ACAAATAAAATTGCAGGTGTTTCTCAA 59.232 29.630 0.00 0.00 33.52 3.02
56 57 7.271511 ACAAATAAAATTGCAGGTGTTTCTCA 58.728 30.769 0.00 0.00 33.52 3.27
57 58 7.713764 ACAAATAAAATTGCAGGTGTTTCTC 57.286 32.000 0.00 0.00 33.52 2.87
58 59 8.421002 AGTACAAATAAAATTGCAGGTGTTTCT 58.579 29.630 0.00 0.00 33.52 2.52
160 162 9.528018 TGAAGGTGTTTTCAAAAGATTTCATAC 57.472 29.630 6.07 0.00 34.32 2.39
215 222 8.950210 TGCAATCTCTTTATCAAAGTCTTTAGG 58.050 33.333 0.00 0.00 39.52 2.69
248 256 3.225104 AGTGACAACATTGTTGCTCCAT 58.775 40.909 25.60 9.06 42.43 3.41
286 299 5.063817 AGGCGCTTTCAAAAATCATTATTGC 59.936 36.000 7.64 0.00 0.00 3.56
314 327 2.857592 CATCTTTTTGGATGGGCGAG 57.142 50.000 0.00 0.00 39.33 5.03
376 390 1.515954 CGACGGGGTGCACTTCTAT 59.484 57.895 17.98 0.00 0.00 1.98
387 401 1.618837 AGATATTGTGATCCGACGGGG 59.381 52.381 15.25 0.00 37.02 5.73
388 402 3.243737 TGAAGATATTGTGATCCGACGGG 60.244 47.826 15.25 0.00 0.00 5.28
428 442 8.141268 GGTTTGATTCTTTGTGGAGTTGAAATA 58.859 33.333 0.00 0.00 0.00 1.40
494 512 6.566141 TGTCCTCGTACATTCGATTATTTGA 58.434 36.000 0.00 0.00 39.12 2.69
505 523 5.244178 AGAGAGTTTTCTGTCCTCGTACATT 59.756 40.000 0.00 0.00 40.55 2.71
508 526 4.769859 AGAGAGTTTTCTGTCCTCGTAC 57.230 45.455 0.00 0.00 40.55 3.67
539 557 6.407202 ACTACTCTTGTTCTTTTGACAGTGT 58.593 36.000 0.00 0.00 0.00 3.55
571 594 9.377383 CGTCATCGTTTAGTAATCAAACTTTTT 57.623 29.630 0.00 0.00 34.43 1.94
576 599 8.922738 TTTTCGTCATCGTTTAGTAATCAAAC 57.077 30.769 0.00 0.00 38.33 2.93
578 601 8.105742 CGATTTTCGTCATCGTTTAGTAATCAA 58.894 33.333 0.00 0.00 38.98 2.57
596 622 6.929587 TCTTCAGAAGTTCTACGATTTTCG 57.070 37.500 4.74 0.00 46.93 3.46
600 626 4.800993 CGCATCTTCAGAAGTTCTACGATT 59.199 41.667 4.74 0.00 0.00 3.34
602 628 3.439129 TCGCATCTTCAGAAGTTCTACGA 59.561 43.478 4.74 10.26 0.00 3.43
604 630 4.987832 TCTCGCATCTTCAGAAGTTCTAC 58.012 43.478 4.74 0.00 0.00 2.59
621 647 2.028930 ACCGGGATATTGAAGATCTCGC 60.029 50.000 15.96 0.00 44.33 5.03
626 652 1.774254 TGGCACCGGGATATTGAAGAT 59.226 47.619 6.32 0.00 0.00 2.40
629 655 1.562008 TCTTGGCACCGGGATATTGAA 59.438 47.619 6.32 0.00 0.00 2.69
630 656 1.208706 TCTTGGCACCGGGATATTGA 58.791 50.000 6.32 0.00 0.00 2.57
632 658 2.290323 GCTATCTTGGCACCGGGATATT 60.290 50.000 6.32 0.00 0.00 1.28
633 659 1.279271 GCTATCTTGGCACCGGGATAT 59.721 52.381 6.32 0.00 0.00 1.63
634 660 0.685097 GCTATCTTGGCACCGGGATA 59.315 55.000 6.32 0.72 0.00 2.59
635 661 1.344953 TGCTATCTTGGCACCGGGAT 61.345 55.000 6.32 0.00 34.56 3.85
636 662 1.971505 CTGCTATCTTGGCACCGGGA 61.972 60.000 6.32 0.00 35.71 5.14
637 663 1.524621 CTGCTATCTTGGCACCGGG 60.525 63.158 6.32 0.00 35.71 5.73
639 665 2.182842 GGCTGCTATCTTGGCACCG 61.183 63.158 0.00 0.00 35.71 4.94
640 666 1.077501 TGGCTGCTATCTTGGCACC 60.078 57.895 0.00 0.00 35.71 5.01
641 667 0.393537 ACTGGCTGCTATCTTGGCAC 60.394 55.000 0.00 0.00 35.71 5.01
642 668 0.393402 CACTGGCTGCTATCTTGGCA 60.393 55.000 0.00 0.00 38.10 4.92
660 687 2.075355 AATTGTTGGTCCCCTCGCCA 62.075 55.000 0.00 0.00 0.00 5.69
694 721 2.176273 CATGTAGGGCAGCAGTCGC 61.176 63.158 0.00 0.00 38.99 5.19
695 722 0.108186 TTCATGTAGGGCAGCAGTCG 60.108 55.000 0.00 0.00 0.00 4.18
696 723 1.373570 GTTCATGTAGGGCAGCAGTC 58.626 55.000 0.00 0.00 0.00 3.51
697 724 0.391661 CGTTCATGTAGGGCAGCAGT 60.392 55.000 0.00 0.00 0.00 4.40
698 725 0.391661 ACGTTCATGTAGGGCAGCAG 60.392 55.000 0.00 0.00 0.00 4.24
699 726 0.391130 GACGTTCATGTAGGGCAGCA 60.391 55.000 0.00 0.00 0.00 4.41
700 727 1.421410 CGACGTTCATGTAGGGCAGC 61.421 60.000 0.00 0.00 0.00 5.25
701 728 1.421410 GCGACGTTCATGTAGGGCAG 61.421 60.000 0.00 0.00 0.00 4.85
702 729 1.447140 GCGACGTTCATGTAGGGCA 60.447 57.895 0.00 0.00 0.00 5.36
703 730 2.514013 CGCGACGTTCATGTAGGGC 61.514 63.158 0.00 0.00 0.00 5.19
704 731 0.866061 CTCGCGACGTTCATGTAGGG 60.866 60.000 3.71 0.00 0.00 3.53
705 732 0.866061 CCTCGCGACGTTCATGTAGG 60.866 60.000 3.71 0.00 0.00 3.18
706 733 0.179171 ACCTCGCGACGTTCATGTAG 60.179 55.000 3.71 0.00 0.00 2.74
707 734 0.455464 CACCTCGCGACGTTCATGTA 60.455 55.000 3.71 0.00 0.00 2.29
708 735 1.733041 CACCTCGCGACGTTCATGT 60.733 57.895 3.71 0.00 0.00 3.21
709 736 1.006825 TTCACCTCGCGACGTTCATG 61.007 55.000 3.71 0.00 0.00 3.07
710 737 1.007336 GTTCACCTCGCGACGTTCAT 61.007 55.000 3.71 0.00 0.00 2.57
711 738 1.659335 GTTCACCTCGCGACGTTCA 60.659 57.895 3.71 0.00 0.00 3.18
712 739 2.704193 CGTTCACCTCGCGACGTTC 61.704 63.158 3.71 0.00 0.00 3.95
713 740 2.116736 TACGTTCACCTCGCGACGTT 62.117 55.000 23.20 10.27 45.32 3.99
714 741 3.957535 ACGTTCACCTCGCGACGT 61.958 61.111 14.55 14.55 43.12 4.34
715 742 2.142239 GTACGTTCACCTCGCGACG 61.142 63.158 3.71 9.80 41.00 5.12
716 743 1.063951 CAGTACGTTCACCTCGCGAC 61.064 60.000 3.71 0.00 0.00 5.19
717 744 1.208358 CAGTACGTTCACCTCGCGA 59.792 57.895 9.26 9.26 0.00 5.87
718 745 2.434134 GCAGTACGTTCACCTCGCG 61.434 63.158 0.00 0.00 0.00 5.87
719 746 2.434134 CGCAGTACGTTCACCTCGC 61.434 63.158 0.00 0.00 36.87 5.03
720 747 3.750162 CGCAGTACGTTCACCTCG 58.250 61.111 0.00 0.00 36.87 4.63
731 758 8.601476 CGATGATGATTATAGTAGTACGCAGTA 58.399 37.037 0.00 0.00 45.11 2.74
733 760 6.907748 CCGATGATGATTATAGTAGTACGCAG 59.092 42.308 0.00 0.00 0.00 5.18
734 761 6.373495 ACCGATGATGATTATAGTAGTACGCA 59.627 38.462 0.00 0.00 0.00 5.24
735 762 6.783162 ACCGATGATGATTATAGTAGTACGC 58.217 40.000 0.00 0.00 0.00 4.42
736 763 9.275231 GAAACCGATGATGATTATAGTAGTACG 57.725 37.037 0.00 0.00 0.00 3.67
737 764 9.570488 GGAAACCGATGATGATTATAGTAGTAC 57.430 37.037 0.00 0.00 0.00 2.73
738 765 9.304335 TGGAAACCGATGATGATTATAGTAGTA 57.696 33.333 0.00 0.00 0.00 1.82
739 766 8.088981 GTGGAAACCGATGATGATTATAGTAGT 58.911 37.037 0.00 0.00 0.00 2.73
740 767 8.088365 TGTGGAAACCGATGATGATTATAGTAG 58.912 37.037 0.00 0.00 0.00 2.57
741 768 7.870954 GTGTGGAAACCGATGATGATTATAGTA 59.129 37.037 0.00 0.00 0.00 1.82
742 769 6.706270 GTGTGGAAACCGATGATGATTATAGT 59.294 38.462 0.00 0.00 0.00 2.12
743 770 6.128822 CGTGTGGAAACCGATGATGATTATAG 60.129 42.308 0.00 0.00 0.00 1.31
744 771 5.694458 CGTGTGGAAACCGATGATGATTATA 59.306 40.000 0.00 0.00 0.00 0.98
745 772 4.511454 CGTGTGGAAACCGATGATGATTAT 59.489 41.667 0.00 0.00 0.00 1.28
746 773 3.868661 CGTGTGGAAACCGATGATGATTA 59.131 43.478 0.00 0.00 0.00 1.75
747 774 2.677836 CGTGTGGAAACCGATGATGATT 59.322 45.455 0.00 0.00 0.00 2.57
748 775 2.279741 CGTGTGGAAACCGATGATGAT 58.720 47.619 0.00 0.00 0.00 2.45
749 776 1.001520 ACGTGTGGAAACCGATGATGA 59.998 47.619 0.00 0.00 0.00 2.92
750 777 1.438651 ACGTGTGGAAACCGATGATG 58.561 50.000 0.00 0.00 0.00 3.07
751 778 2.178912 AACGTGTGGAAACCGATGAT 57.821 45.000 0.00 0.00 0.00 2.45
752 779 1.600013 CAAACGTGTGGAAACCGATGA 59.400 47.619 0.00 0.00 0.00 2.92
753 780 1.924191 GCAAACGTGTGGAAACCGATG 60.924 52.381 8.05 0.00 0.00 3.84
754 781 0.309612 GCAAACGTGTGGAAACCGAT 59.690 50.000 8.05 0.00 0.00 4.18
755 782 0.745128 AGCAAACGTGTGGAAACCGA 60.745 50.000 8.05 0.00 0.00 4.69
756 783 0.938713 TAGCAAACGTGTGGAAACCG 59.061 50.000 8.05 0.00 0.00 4.44
757 784 3.636282 AATAGCAAACGTGTGGAAACC 57.364 42.857 8.05 0.00 0.00 3.27
758 785 4.156182 GCTAATAGCAAACGTGTGGAAAC 58.844 43.478 8.05 0.00 41.89 2.78
759 786 3.189702 GGCTAATAGCAAACGTGTGGAAA 59.810 43.478 14.76 0.00 44.75 3.13
760 787 2.745281 GGCTAATAGCAAACGTGTGGAA 59.255 45.455 14.76 0.00 44.75 3.53
761 788 2.352388 GGCTAATAGCAAACGTGTGGA 58.648 47.619 14.76 0.00 44.75 4.02
762 789 1.400494 GGGCTAATAGCAAACGTGTGG 59.600 52.381 14.76 0.00 44.75 4.17
763 790 1.062002 CGGGCTAATAGCAAACGTGTG 59.938 52.381 14.76 0.00 44.75 3.82
764 791 1.338389 ACGGGCTAATAGCAAACGTGT 60.338 47.619 21.43 6.36 44.75 4.49
765 792 1.326548 GACGGGCTAATAGCAAACGTG 59.673 52.381 25.07 7.91 44.75 4.49
766 793 1.206371 AGACGGGCTAATAGCAAACGT 59.794 47.619 21.95 21.95 44.75 3.99
767 794 1.593006 CAGACGGGCTAATAGCAAACG 59.407 52.381 14.76 16.20 44.75 3.60
778 805 3.394836 GGCTTCTCCAGACGGGCT 61.395 66.667 0.00 0.00 36.21 5.19
828 855 1.330829 GCAACGCTTATGGGCTTCTAC 59.669 52.381 0.00 0.00 0.00 2.59
1191 1218 2.165301 GGATCCGACGAAACCTGCG 61.165 63.158 0.00 0.00 0.00 5.18
1240 1267 3.705604 ACCATGAGAAACGCAACAAAAG 58.294 40.909 0.00 0.00 0.00 2.27
1280 1311 2.560542 GTCATCTATGATGCTCCTCGGT 59.439 50.000 2.93 0.00 39.30 4.69
1469 1502 2.387757 ACTTTCAGCTCCTGGCAAAAA 58.612 42.857 0.00 0.00 44.79 1.94
1551 1584 5.063180 TGGTACACAAAGTATACACGAGG 57.937 43.478 5.50 0.00 34.67 4.63
1645 1681 4.383774 TGTGCGAGAAAAATTACAGTCG 57.616 40.909 0.00 0.00 0.00 4.18
1662 1698 2.414559 CCAAAACTCACGGATGATGTGC 60.415 50.000 0.00 0.00 37.26 4.57
1665 1701 1.133025 GGCCAAAACTCACGGATGATG 59.867 52.381 0.00 0.00 33.22 3.07
1671 1707 1.101049 ACAGTGGCCAAAACTCACGG 61.101 55.000 7.24 0.00 36.60 4.94
1727 1766 3.067106 GCAGGACTCAACGATTTCTGAA 58.933 45.455 0.00 0.00 0.00 3.02
1796 1835 2.094390 CACAATCAAACCATCAGGCTGG 60.094 50.000 15.73 1.55 42.35 4.85
1896 1935 0.323629 GTTGTACACTGCCCCAGCTA 59.676 55.000 0.00 0.00 40.80 3.32
2000 2040 5.385198 TGAGGGTAAGCTTCTGACATTTTT 58.615 37.500 0.00 0.00 0.00 1.94
2121 2162 3.671008 AATTGTTGTCTGCATGCATGT 57.329 38.095 26.79 0.78 0.00 3.21
2152 2193 7.999679 TGAAAAACATAGATAAAGCATGAGGG 58.000 34.615 0.00 0.00 0.00 4.30
2195 2236 3.629142 ACTACTTTCCAGGCCACATAC 57.371 47.619 5.01 0.00 0.00 2.39
2197 2238 3.525800 AAACTACTTTCCAGGCCACAT 57.474 42.857 5.01 0.00 0.00 3.21
2204 2245 8.871686 AATGCTAAAACAAAACTACTTTCCAG 57.128 30.769 0.00 0.00 0.00 3.86
2253 2294 4.269603 CAGAAGACTGCAGGATGTTTATCG 59.730 45.833 19.93 0.00 39.31 2.92
2257 2298 3.498774 ACAGAAGACTGCAGGATGTTT 57.501 42.857 19.93 4.45 46.95 2.83
2282 2323 9.607988 AGAAACCAAGAAACCGAAAAATAAAAT 57.392 25.926 0.00 0.00 0.00 1.82
2293 2334 3.995048 GGTCTAGAGAAACCAAGAAACCG 59.005 47.826 0.00 0.00 35.53 4.44
2368 2409 1.134159 AGAATCATCACAGCAGCCTCC 60.134 52.381 0.00 0.00 0.00 4.30
2372 2413 0.381089 GCCAGAATCATCACAGCAGC 59.619 55.000 0.00 0.00 0.00 5.25
2425 2502 2.684881 GAGCAACCAGAGAGAGAGAGAG 59.315 54.545 0.00 0.00 0.00 3.20
2427 2504 2.445427 TGAGCAACCAGAGAGAGAGAG 58.555 52.381 0.00 0.00 0.00 3.20
2429 2506 2.739287 GCATGAGCAACCAGAGAGAGAG 60.739 54.545 0.00 0.00 41.58 3.20
2431 2508 1.654317 GCATGAGCAACCAGAGAGAG 58.346 55.000 0.00 0.00 41.58 3.20
2453 2532 6.558771 TTGTTCTTGAGTATGAATGTGTGG 57.441 37.500 0.00 0.00 0.00 4.17
2518 2615 9.411189 TCAGATGACCAATCATGAAATAATCAA 57.589 29.630 0.00 0.00 46.01 2.57
2523 2620 9.063615 CAGAATCAGATGACCAATCATGAAATA 57.936 33.333 0.00 0.00 46.01 1.40
2536 2633 3.456280 GAGGTGCTCAGAATCAGATGAC 58.544 50.000 0.00 0.00 0.00 3.06
2578 2675 6.486657 GCCAAGACAACATATATTCTAGGCAA 59.513 38.462 0.00 0.00 36.03 4.52
2618 2715 1.067000 ACAACAGCAGCAACAAAGCAA 60.067 42.857 0.00 0.00 36.85 3.91
2631 2728 0.024873 GCGCACAACAAAACAACAGC 59.975 50.000 0.30 0.00 0.00 4.40
2648 2745 6.567769 ATTTTTAGTGTGAACTTTTGTGCG 57.432 33.333 0.00 0.00 0.00 5.34
2724 2821 3.850122 TTGTCCTCATACTGTGTCTCG 57.150 47.619 0.00 0.00 0.00 4.04
2742 2839 8.601845 TTACATAGTTCCGAATGGACATATTG 57.398 34.615 0.00 0.00 46.45 1.90
2756 2853 2.608090 GCAGCTCGGTTTACATAGTTCC 59.392 50.000 0.00 0.00 0.00 3.62
2770 2867 4.361451 AAAATGATACCAAAGCAGCTCG 57.639 40.909 0.00 0.00 0.00 5.03
2792 2889 9.301897 ACCTAACTGAAGCATAGAAATTTCTTT 57.698 29.630 25.02 15.09 38.70 2.52
2798 2895 9.167311 CAAACTACCTAACTGAAGCATAGAAAT 57.833 33.333 0.00 0.00 0.00 2.17
2816 2913 5.842907 AGGAAAATGAGCAAACAAACTACC 58.157 37.500 0.00 0.00 0.00 3.18
2883 2980 5.725325 AGTAGGTCTCAGGTTAACAAGAC 57.275 43.478 19.14 19.14 37.90 3.01
2887 2984 5.892119 CCTCATAGTAGGTCTCAGGTTAACA 59.108 44.000 8.10 0.00 31.46 2.41
2951 3048 6.094464 GTGAGGTAAAATAAGCAAACGGGTAT 59.906 38.462 0.00 0.00 0.00 2.73
2956 3095 7.867445 ATTTGTGAGGTAAAATAAGCAAACG 57.133 32.000 0.00 0.00 0.00 3.60
3009 3151 3.195610 ACGAGAAGACCATCATTGTAGCA 59.804 43.478 0.00 0.00 0.00 3.49
3013 3155 4.935808 GGTTAACGAGAAGACCATCATTGT 59.064 41.667 0.00 0.00 32.41 2.71
3029 3171 5.068234 TCATAGTTGGTCTCAGGTTAACG 57.932 43.478 0.00 0.00 0.00 3.18
3064 3206 7.042950 TGTTGAGATGCATAATTTTGAATGGG 58.957 34.615 0.00 0.00 0.00 4.00
3079 3221 1.251251 AACCAAGGCTGTTGAGATGC 58.749 50.000 0.00 0.00 0.00 3.91
3087 3229 3.622455 GCTACCAAGATAACCAAGGCTGT 60.622 47.826 0.00 0.00 0.00 4.40
3105 3250 5.746990 ACCCTCATCCTGTTATATGCTAC 57.253 43.478 0.00 0.00 0.00 3.58
3109 3254 6.935240 TCCTAACCCTCATCCTGTTATATG 57.065 41.667 0.00 0.00 0.00 1.78
3112 3257 6.848562 AAATCCTAACCCTCATCCTGTTAT 57.151 37.500 0.00 0.00 0.00 1.89
3156 3301 5.869753 AATCGATCTGAAACAGAAACAGG 57.130 39.130 0.00 0.00 44.04 4.00
3182 3327 4.527816 ACAGCAGCCTCCAAATTTCATTAA 59.472 37.500 0.00 0.00 0.00 1.40
3184 3329 2.901839 ACAGCAGCCTCCAAATTTCATT 59.098 40.909 0.00 0.00 0.00 2.57
3253 3400 9.129209 GCTCAGTTTAATAGTTTTGAATGGTTC 57.871 33.333 0.00 0.00 0.00 3.62
3292 3439 4.855715 AGTTTCTTTTAGAAGCAAGGGC 57.144 40.909 6.15 0.00 37.82 5.19
3293 3440 6.641169 AGAAGTTTCTTTTAGAAGCAAGGG 57.359 37.500 6.15 0.00 37.82 3.95
3326 3474 9.447157 AATTTAGATCAGAGACAGGAAAAGAAG 57.553 33.333 0.00 0.00 0.00 2.85
3354 3502 5.829924 CACTGTAGCCTCCAAATTCCATAAT 59.170 40.000 0.00 0.00 0.00 1.28
3595 3752 6.981559 GCCACCAGATTTTGTAACAAACTTAA 59.018 34.615 0.00 0.00 0.00 1.85
3756 3915 9.796120 TTGTAACAAACTTAGATCAAAAACAGG 57.204 29.630 0.00 0.00 0.00 4.00
3765 4174 7.302524 TCCGCATTTTGTAACAAACTTAGATC 58.697 34.615 0.00 0.00 0.00 2.75
3781 4190 2.813226 TACCGCAGCCTCCGCATTTT 62.813 55.000 0.00 0.00 37.52 1.82
3786 4195 3.272334 CAATACCGCAGCCTCCGC 61.272 66.667 0.00 0.00 0.00 5.54
3787 4196 1.024579 AAACAATACCGCAGCCTCCG 61.025 55.000 0.00 0.00 0.00 4.63
3836 4245 4.918810 ATGGTTTGAGTTTGTCTTCACC 57.081 40.909 0.00 0.00 0.00 4.02
3869 4278 1.346068 AGAAGTGGAGGTGCTCAGTTC 59.654 52.381 0.00 0.00 31.08 3.01
3920 4329 5.163854 CCAAATACTAAAGCGGAACTCACAG 60.164 44.000 0.00 0.00 0.00 3.66
3973 4382 3.515602 AGAAGCAAACAACCAGAGGAT 57.484 42.857 0.00 0.00 0.00 3.24
3989 4398 7.315890 CCAGTGGCCTAAATTTCTTTTAGAAG 58.684 38.462 3.32 0.00 46.59 2.85
4023 4432 5.661565 AGTAGTAACCAGGGATGCCATATA 58.338 41.667 5.86 0.00 0.00 0.86
4028 4437 2.367894 GGTAGTAGTAACCAGGGATGCC 59.632 54.545 0.00 0.00 36.96 4.40
4051 4460 1.879380 CTGCCAAAACGTCTGGAATGA 59.121 47.619 18.36 0.98 35.85 2.57
4052 4461 1.608590 ACTGCCAAAACGTCTGGAATG 59.391 47.619 18.36 10.22 35.85 2.67
4053 4462 1.981256 ACTGCCAAAACGTCTGGAAT 58.019 45.000 18.36 2.34 35.85 3.01
4054 4463 1.673920 GAACTGCCAAAACGTCTGGAA 59.326 47.619 18.36 8.70 35.85 3.53
4055 4464 1.305201 GAACTGCCAAAACGTCTGGA 58.695 50.000 18.36 5.16 35.85 3.86
4056 4465 1.021202 TGAACTGCCAAAACGTCTGG 58.979 50.000 11.42 11.42 36.99 3.86
4057 4466 2.842208 TTGAACTGCCAAAACGTCTG 57.158 45.000 0.00 0.00 0.00 3.51
4058 4467 3.380004 TCAATTGAACTGCCAAAACGTCT 59.620 39.130 5.45 0.00 0.00 4.18
4059 4468 3.701241 TCAATTGAACTGCCAAAACGTC 58.299 40.909 5.45 0.00 0.00 4.34
4060 4469 3.791973 TCAATTGAACTGCCAAAACGT 57.208 38.095 5.45 0.00 0.00 3.99
4072 4481 6.128145 TGAGACGTTTTGACAGTTCAATTGAA 60.128 34.615 16.91 16.91 41.50 2.69
4073 4482 5.352846 TGAGACGTTTTGACAGTTCAATTGA 59.647 36.000 3.38 3.38 41.50 2.57
4074 4483 5.568482 TGAGACGTTTTGACAGTTCAATTG 58.432 37.500 0.00 0.00 41.50 2.32
4075 4484 5.811399 TGAGACGTTTTGACAGTTCAATT 57.189 34.783 0.00 0.00 41.50 2.32
4076 4485 7.672983 ATATGAGACGTTTTGACAGTTCAAT 57.327 32.000 0.00 0.00 41.50 2.57
4085 4494 9.483916 TCTGTTTCTAAATATGAGACGTTTTGA 57.516 29.630 0.00 0.00 0.00 2.69
4118 4527 8.954350 ACTTTAACGAGAGCTTGTCTAATACTA 58.046 33.333 0.00 0.00 34.71 1.82
4119 4528 7.828712 ACTTTAACGAGAGCTTGTCTAATACT 58.171 34.615 0.00 0.00 34.71 2.12
4120 4529 8.463456 AACTTTAACGAGAGCTTGTCTAATAC 57.537 34.615 0.00 0.00 34.71 1.89
4121 4530 8.301720 TGAACTTTAACGAGAGCTTGTCTAATA 58.698 33.333 0.00 0.00 34.71 0.98
4122 4531 7.152645 TGAACTTTAACGAGAGCTTGTCTAAT 58.847 34.615 0.00 0.00 34.71 1.73
4123 4532 6.509656 TGAACTTTAACGAGAGCTTGTCTAA 58.490 36.000 0.00 0.00 34.71 2.10
4166 4577 7.885297 AGATAGCAAAGAAAACTGTGCATTAA 58.115 30.769 13.64 0.00 39.50 1.40
4217 4638 5.168526 TCGACCAAATCAAACAAAGACAG 57.831 39.130 0.00 0.00 0.00 3.51
4237 4658 1.872952 TCACCAGTCTGCAACAATTCG 59.127 47.619 0.00 0.00 0.00 3.34
4561 4983 3.966979 TGCCTGCCATAATCAGAGAAAA 58.033 40.909 0.00 0.00 33.54 2.29
4667 5089 4.507335 GCCAGATATGGAGGGCATTTCTTA 60.507 45.833 11.49 0.00 45.70 2.10
4787 5210 0.581529 CAAACTCGTTCTGCGCTTCA 59.418 50.000 9.73 0.00 41.07 3.02
4793 5216 1.136611 CGTAGCACAAACTCGTTCTGC 60.137 52.381 4.92 4.92 0.00 4.26
4938 5361 7.546778 TTTGAACACCCTTTTAAGATTTTGC 57.453 32.000 0.00 0.00 0.00 3.68
5059 5482 6.404734 CCTTTCTCCACAAACATGGTTATAGC 60.405 42.308 0.00 0.00 40.95 2.97
5177 5600 7.284820 ACAGTTTGCTTAGTAAGAGGGTTTAA 58.715 34.615 14.27 0.00 0.00 1.52
5178 5601 6.834107 ACAGTTTGCTTAGTAAGAGGGTTTA 58.166 36.000 14.27 0.00 0.00 2.01
5186 5609 9.640963 AGTGTATTCTACAGTTTGCTTAGTAAG 57.359 33.333 5.47 5.47 39.19 2.34
5214 5638 5.732647 CGTGGAATATTTTGTGTAAGCTTCG 59.267 40.000 0.00 0.00 0.00 3.79
5225 5649 5.636965 TGAAAACATGCCGTGGAATATTTTG 59.363 36.000 0.53 0.00 0.00 2.44
5234 5658 2.791383 TTTCTGAAAACATGCCGTGG 57.209 45.000 0.00 0.00 0.00 4.94
5240 5664 7.535258 CAGGAGTTACGATTTTCTGAAAACATG 59.465 37.037 17.06 12.06 32.37 3.21
5243 5667 6.371389 CCAGGAGTTACGATTTTCTGAAAAC 58.629 40.000 17.06 10.47 32.37 2.43
5257 5681 3.371965 TCAGTGATACCCCAGGAGTTAC 58.628 50.000 0.00 0.00 0.00 2.50
5271 5695 6.966534 AAAAACTCCATTGTCTTCAGTGAT 57.033 33.333 0.00 0.00 33.95 3.06
5303 5727 8.295288 CCAGGCTGATAGAAATCATTAATGTTC 58.705 37.037 17.94 11.99 41.29 3.18
5379 6024 7.675161 TCCTTGTGATATTCTCCTCAACATA 57.325 36.000 0.00 0.00 0.00 2.29
5400 6049 8.826293 TTTACCGGTTTCCATTAAATATTCCT 57.174 30.769 15.04 0.00 0.00 3.36
5419 6068 3.065095 TCTTTTCCACGTGGTTTTTACCG 59.935 43.478 32.74 14.46 36.34 4.02
5426 6075 6.399639 AAATGTAATCTTTTCCACGTGGTT 57.600 33.333 32.74 20.82 36.34 3.67
5470 6142 8.630054 TCCCGAATTTAAAATATACTCATGGG 57.370 34.615 0.00 0.00 0.00 4.00
5624 6305 3.625764 ACTAAACAACACACAATCTGCGT 59.374 39.130 0.00 0.00 0.00 5.24
5626 6307 6.885735 AAAACTAAACAACACACAATCTGC 57.114 33.333 0.00 0.00 0.00 4.26
5660 6341 7.651304 TCATGAATTAAACTGTGCACGAAAAAT 59.349 29.630 13.13 5.48 0.00 1.82
5662 6343 6.499172 TCATGAATTAAACTGTGCACGAAAA 58.501 32.000 13.13 2.45 0.00 2.29
5663 6344 6.066054 TCATGAATTAAACTGTGCACGAAA 57.934 33.333 13.13 2.08 0.00 3.46
5664 6345 5.681337 TCATGAATTAAACTGTGCACGAA 57.319 34.783 13.13 1.47 0.00 3.85
5665 6346 4.378356 GCTCATGAATTAAACTGTGCACGA 60.378 41.667 13.13 0.33 0.00 4.35
5666 6347 3.848019 GCTCATGAATTAAACTGTGCACG 59.152 43.478 13.13 9.67 0.00 5.34
5667 6348 4.618489 GTGCTCATGAATTAAACTGTGCAC 59.382 41.667 10.75 10.75 45.70 4.57
5812 6493 9.453325 TTTTAGAAAACACTCGCGAATTAAAAT 57.547 25.926 11.33 0.00 0.00 1.82
5813 6494 8.838452 TTTTAGAAAACACTCGCGAATTAAAA 57.162 26.923 11.33 4.41 0.00 1.52
5814 6495 9.453325 AATTTTAGAAAACACTCGCGAATTAAA 57.547 25.926 11.33 0.00 0.00 1.52
5815 6496 9.109533 GAATTTTAGAAAACACTCGCGAATTAA 57.890 29.630 11.33 0.00 0.00 1.40
5816 6497 8.283992 TGAATTTTAGAAAACACTCGCGAATTA 58.716 29.630 11.33 0.00 0.00 1.40
5817 6498 7.136119 TGAATTTTAGAAAACACTCGCGAATT 58.864 30.769 11.33 1.45 0.00 2.17
5818 6499 6.664515 TGAATTTTAGAAAACACTCGCGAAT 58.335 32.000 11.33 0.00 0.00 3.34
5819 6500 6.050454 TGAATTTTAGAAAACACTCGCGAA 57.950 33.333 11.33 0.00 0.00 4.70
5820 6501 5.660629 TGAATTTTAGAAAACACTCGCGA 57.339 34.783 9.26 9.26 0.00 5.87
5821 6502 5.283717 CCATGAATTTTAGAAAACACTCGCG 59.716 40.000 0.00 0.00 0.00 5.87
5822 6503 5.572896 CCCATGAATTTTAGAAAACACTCGC 59.427 40.000 0.00 0.00 0.00 5.03
5823 6504 6.677913 ACCCATGAATTTTAGAAAACACTCG 58.322 36.000 0.00 0.00 0.00 4.18
5824 6505 8.887036 AAACCCATGAATTTTAGAAAACACTC 57.113 30.769 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.