Multiple sequence alignment - TraesCS7D01G296300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G296300 chr7D 100.000 4381 0 0 1 4381 372271925 372267545 0.000000e+00 8091.0
1 TraesCS7D01G296300 chr7B 93.844 1657 57 13 2046 3673 367495738 367494098 0.000000e+00 2453.0
2 TraesCS7D01G296300 chr7B 94.964 1112 40 4 763 1873 367497190 367496094 0.000000e+00 1729.0
3 TraesCS7D01G296300 chr7B 79.408 709 125 21 18 718 513279165 513278470 8.520000e-132 481.0
4 TraesCS7D01G296300 chr7B 82.620 397 39 17 3930 4303 367493848 367493459 1.520000e-84 324.0
5 TraesCS7D01G296300 chr7B 97.765 179 3 1 1879 2056 367496137 367495959 1.530000e-79 307.0
6 TraesCS7D01G296300 chr7A 95.592 1089 43 1 763 1851 417150530 417149447 0.000000e+00 1740.0
7 TraesCS7D01G296300 chr7A 95.527 1073 39 5 2631 3695 417148910 417147839 0.000000e+00 1707.0
8 TraesCS7D01G296300 chr7A 95.568 519 19 3 2055 2571 417149447 417148931 0.000000e+00 828.0
9 TraesCS7D01G296300 chr7A 85.931 462 24 14 3741 4180 417147836 417147394 5.170000e-124 455.0
10 TraesCS7D01G296300 chr2B 84.252 635 92 6 83 716 678568743 678569370 2.900000e-171 612.0
11 TraesCS7D01G296300 chr6B 90.287 453 40 4 272 723 218672639 218672190 1.360000e-164 590.0
12 TraesCS7D01G296300 chr5D 84.832 567 82 4 153 718 52663153 52662590 6.360000e-158 568.0
13 TraesCS7D01G296300 chr5D 89.781 411 39 3 307 716 327463821 327464229 1.400000e-144 523.0
14 TraesCS7D01G296300 chr6A 84.071 565 86 4 153 716 305126132 305125571 3.850000e-150 542.0
15 TraesCS7D01G296300 chr3D 80.426 705 124 14 22 720 11012024 11011328 3.880000e-145 525.0
16 TraesCS7D01G296300 chr2A 79.520 708 124 21 18 717 665943779 665943085 6.590000e-133 484.0
17 TraesCS7D01G296300 chr6D 89.200 250 26 1 458 707 348960844 348961092 1.180000e-80 311.0
18 TraesCS7D01G296300 chr5B 89.706 68 7 0 651 718 703182123 703182190 2.170000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G296300 chr7D 372267545 372271925 4380 True 8091.00 8091 100.00000 1 4381 1 chr7D.!!$R1 4380
1 TraesCS7D01G296300 chr7B 367493459 367497190 3731 True 1203.25 2453 92.29825 763 4303 4 chr7B.!!$R2 3540
2 TraesCS7D01G296300 chr7B 513278470 513279165 695 True 481.00 481 79.40800 18 718 1 chr7B.!!$R1 700
3 TraesCS7D01G296300 chr7A 417147394 417150530 3136 True 1182.50 1740 93.15450 763 4180 4 chr7A.!!$R1 3417
4 TraesCS7D01G296300 chr2B 678568743 678569370 627 False 612.00 612 84.25200 83 716 1 chr2B.!!$F1 633
5 TraesCS7D01G296300 chr5D 52662590 52663153 563 True 568.00 568 84.83200 153 718 1 chr5D.!!$R1 565
6 TraesCS7D01G296300 chr6A 305125571 305126132 561 True 542.00 542 84.07100 153 716 1 chr6A.!!$R1 563
7 TraesCS7D01G296300 chr3D 11011328 11012024 696 True 525.00 525 80.42600 22 720 1 chr3D.!!$R1 698
8 TraesCS7D01G296300 chr2A 665943085 665943779 694 True 484.00 484 79.52000 18 717 1 chr2A.!!$R1 699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
413 414 0.036306 CCCAAAGTACAGCGGAAGGT 59.964 55.000 0.0 0.0 46.81 3.50 F
1221 1226 0.036306 ACCGCTCCCTTAACAGTTGG 59.964 55.000 0.0 0.0 0.00 3.77 F
1846 1852 1.202114 GCGCATTGTCATTTCTTCCCA 59.798 47.619 0.3 0.0 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1585 1591 1.264020 CCCACTTCACACATCAACACG 59.736 52.381 0.0 0.0 0.00 4.49 R
2606 2846 0.179086 TCAGACAACGTGCAAGCTCA 60.179 50.000 0.0 0.0 0.00 4.26 R
3703 3972 0.247736 AAGGAGACGCAAGCGATTCT 59.752 50.000 22.3 14.1 42.83 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.969894 AGGATCGGCCGATTTAGAGG 59.030 55.000 39.14 1.51 43.43 3.69
27 28 1.287425 GCCGATTTAGAGGTGGAACG 58.713 55.000 0.00 0.00 38.12 3.95
53 54 0.508641 GCACATATACGGCTGCTTCG 59.491 55.000 0.00 0.00 0.00 3.79
56 57 0.319900 CATATACGGCTGCTTCGGCT 60.320 55.000 0.00 0.00 42.37 5.52
59 60 0.249489 ATACGGCTGCTTCGGCTTAG 60.249 55.000 0.00 0.00 42.37 2.18
80 81 2.420129 GGCGATAATGTGTGAAGGAGGT 60.420 50.000 0.00 0.00 0.00 3.85
140 141 2.512056 AGCTCCTCTCTCCTGTAAGCTA 59.488 50.000 0.00 0.00 36.88 3.32
150 151 4.716784 TCTCCTGTAAGCTATTCATGTGGT 59.283 41.667 0.00 0.00 0.00 4.16
155 156 2.512692 AGCTATTCATGTGGTTGGCA 57.487 45.000 0.00 0.00 0.00 4.92
168 169 3.264574 TTGGCAGTCCAATACAGGC 57.735 52.632 0.00 0.00 46.89 4.85
189 190 0.109689 CTGGACTTCGGACAGACGAC 60.110 60.000 0.00 0.00 43.37 4.34
226 227 4.142160 GCAGGATACGATATCACCATGCTA 60.142 45.833 3.12 0.00 46.39 3.49
248 249 0.252421 TGTGTGAGCAGGAGGAGGAT 60.252 55.000 0.00 0.00 0.00 3.24
250 251 2.111384 GTGTGAGCAGGAGGAGGATAA 58.889 52.381 0.00 0.00 0.00 1.75
263 264 2.509964 GGAGGATAAGGTGGACCACATT 59.490 50.000 26.22 26.22 41.27 2.71
264 265 3.053619 GGAGGATAAGGTGGACCACATTT 60.054 47.826 27.88 20.89 39.15 2.32
267 268 4.292306 AGGATAAGGTGGACCACATTTCTT 59.708 41.667 27.88 20.87 39.15 2.52
278 279 6.127758 TGGACCACATTTCTTATACATTGTGC 60.128 38.462 0.00 0.00 34.57 4.57
279 280 6.095440 GGACCACATTTCTTATACATTGTGCT 59.905 38.462 0.00 0.00 34.57 4.40
294 295 0.967380 GTGCTTATGCCAGGCAGGTT 60.967 55.000 21.51 5.68 43.65 3.50
295 296 0.623194 TGCTTATGCCAGGCAGGTTA 59.377 50.000 21.51 4.52 43.65 2.85
299 300 2.184088 TATGCCAGGCAGGTTAGGTA 57.816 50.000 21.51 2.05 43.65 3.08
318 319 1.620822 ACCAATGCTTCACCAAGGTC 58.379 50.000 0.00 0.00 0.00 3.85
328 329 0.461961 CACCAAGGTCGAGATCCCTC 59.538 60.000 0.00 0.00 36.08 4.30
344 345 0.747283 CCTCTGGAGCTGATGCCAAC 60.747 60.000 0.00 0.00 40.80 3.77
346 347 1.483827 CTCTGGAGCTGATGCCAACTA 59.516 52.381 0.00 0.00 40.80 2.24
356 357 4.156556 GCTGATGCCAACTAGACATGAAAA 59.843 41.667 0.00 0.00 0.00 2.29
375 376 2.750350 GTGGAGGACTGGTGGGTG 59.250 66.667 0.00 0.00 0.00 4.61
378 379 3.249189 GAGGACTGGTGGGTGGCA 61.249 66.667 0.00 0.00 0.00 4.92
389 390 0.982852 TGGGTGGCATCGAGGAAGAT 60.983 55.000 0.00 0.00 0.00 2.40
399 400 0.322456 CGAGGAAGATGGTGCCCAAA 60.322 55.000 0.00 0.00 36.95 3.28
413 414 0.036306 CCCAAAGTACAGCGGAAGGT 59.964 55.000 0.00 0.00 46.81 3.50
438 439 4.900684 TCGATTCCTTTGTCATGTTGGTA 58.099 39.130 0.00 0.00 0.00 3.25
444 445 5.136828 TCCTTTGTCATGTTGGTATGTTGT 58.863 37.500 0.00 0.00 0.00 3.32
445 446 5.009510 TCCTTTGTCATGTTGGTATGTTGTG 59.990 40.000 0.00 0.00 0.00 3.33
449 451 5.586339 TGTCATGTTGGTATGTTGTGTTTG 58.414 37.500 0.00 0.00 0.00 2.93
482 484 4.604490 AGGAATGGTAGGGTTTTTGGTAGA 59.396 41.667 0.00 0.00 0.00 2.59
501 503 5.175491 GGTAGAAACGACGTGTGTAATGAAA 59.825 40.000 0.00 0.00 0.00 2.69
531 533 3.054065 GGTCAGGAACATTCTCAGGGAAT 60.054 47.826 0.00 0.00 44.66 3.01
539 541 2.205022 TTCTCAGGGAATGCCACTTG 57.795 50.000 0.00 0.00 35.15 3.16
550 552 3.294493 CCACTTGTGGGCGTTGGG 61.294 66.667 11.72 0.00 0.00 4.12
553 555 2.035626 CTTGTGGGCGTTGGGGAT 59.964 61.111 0.00 0.00 0.00 3.85
597 599 1.065851 GTGAGTAGTCGCTTAGGAGCC 59.934 57.143 3.77 0.00 46.42 4.70
598 600 1.340697 TGAGTAGTCGCTTAGGAGCCA 60.341 52.381 0.00 0.00 46.42 4.75
602 604 0.612174 AGTCGCTTAGGAGCCAGTCA 60.612 55.000 0.00 0.00 46.42 3.41
605 607 0.247736 CGCTTAGGAGCCAGTCAAGT 59.752 55.000 0.00 0.00 46.42 3.16
606 608 1.731720 GCTTAGGAGCCAGTCAAGTG 58.268 55.000 0.00 0.00 43.29 3.16
628 630 0.899019 TGTGTAGGCACGCCTTATGA 59.101 50.000 17.25 0.00 45.70 2.15
635 637 0.946528 GCACGCCTTATGATGATGCA 59.053 50.000 0.00 0.00 0.00 3.96
709 714 2.383527 GCCTTTCGTGTGCTCTCGG 61.384 63.158 9.97 0.00 0.00 4.63
741 746 2.323213 GGCTCCCGAAAACGTTTCA 58.677 52.632 15.01 0.00 0.00 2.69
742 747 0.664224 GGCTCCCGAAAACGTTTCAA 59.336 50.000 15.01 0.00 0.00 2.69
743 748 1.268625 GGCTCCCGAAAACGTTTCAAT 59.731 47.619 15.01 0.00 0.00 2.57
744 749 2.287970 GGCTCCCGAAAACGTTTCAATT 60.288 45.455 15.01 0.00 0.00 2.32
745 750 2.724174 GCTCCCGAAAACGTTTCAATTG 59.276 45.455 15.01 0.00 0.00 2.32
746 751 3.305110 CTCCCGAAAACGTTTCAATTGG 58.695 45.455 15.01 11.83 0.00 3.16
747 752 2.034812 TCCCGAAAACGTTTCAATTGGG 59.965 45.455 22.95 22.95 35.40 4.12
748 753 2.223852 CCCGAAAACGTTTCAATTGGGT 60.224 45.455 21.49 3.30 0.00 4.51
749 754 3.004524 CCCGAAAACGTTTCAATTGGGTA 59.995 43.478 21.49 0.00 0.00 3.69
750 755 4.321378 CCCGAAAACGTTTCAATTGGGTAT 60.321 41.667 21.49 1.99 0.00 2.73
751 756 5.224135 CCGAAAACGTTTCAATTGGGTATT 58.776 37.500 15.01 0.00 0.00 1.89
752 757 5.692654 CCGAAAACGTTTCAATTGGGTATTT 59.307 36.000 15.01 0.00 0.00 1.40
753 758 6.201234 CCGAAAACGTTTCAATTGGGTATTTT 59.799 34.615 15.01 6.80 0.00 1.82
754 759 7.254488 CCGAAAACGTTTCAATTGGGTATTTTT 60.254 33.333 15.01 6.65 0.00 1.94
755 760 7.790216 CGAAAACGTTTCAATTGGGTATTTTTC 59.210 33.333 15.01 13.28 0.00 2.29
756 761 8.494016 AAAACGTTTCAATTGGGTATTTTTCA 57.506 26.923 15.01 0.00 0.00 2.69
757 762 8.669946 AAACGTTTCAATTGGGTATTTTTCAT 57.330 26.923 7.96 0.00 0.00 2.57
758 763 7.650834 ACGTTTCAATTGGGTATTTTTCATG 57.349 32.000 5.42 0.00 0.00 3.07
759 764 7.213678 ACGTTTCAATTGGGTATTTTTCATGT 58.786 30.769 5.42 0.00 0.00 3.21
760 765 8.361139 ACGTTTCAATTGGGTATTTTTCATGTA 58.639 29.630 5.42 0.00 0.00 2.29
761 766 9.197694 CGTTTCAATTGGGTATTTTTCATGTAA 57.802 29.630 5.42 0.00 0.00 2.41
792 797 7.121020 GGGTATTTTTCATGTAAAACCGGTCTA 59.879 37.037 8.04 0.00 36.79 2.59
824 829 5.321959 TCATGAAAAACAAACACAGAGCA 57.678 34.783 0.00 0.00 0.00 4.26
914 919 4.394797 AAAGCTCTTCTTTCTCCCCAAT 57.605 40.909 0.00 0.00 40.89 3.16
982 987 1.080434 GCGAGCGGTGAGAGAACTT 60.080 57.895 0.00 0.00 0.00 2.66
986 991 1.179814 AGCGGTGAGAGAACTTCGGT 61.180 55.000 0.00 0.00 0.00 4.69
1127 1132 2.143925 GCTCGCTCCTGTGTTTTAGTT 58.856 47.619 0.00 0.00 0.00 2.24
1213 1218 1.188863 GTGTCCTTACCGCTCCCTTA 58.811 55.000 0.00 0.00 0.00 2.69
1217 1222 1.829222 TCCTTACCGCTCCCTTAACAG 59.171 52.381 0.00 0.00 0.00 3.16
1218 1223 1.553704 CCTTACCGCTCCCTTAACAGT 59.446 52.381 0.00 0.00 0.00 3.55
1219 1224 2.027469 CCTTACCGCTCCCTTAACAGTT 60.027 50.000 0.00 0.00 0.00 3.16
1220 1225 2.754946 TACCGCTCCCTTAACAGTTG 57.245 50.000 0.00 0.00 0.00 3.16
1221 1226 0.036306 ACCGCTCCCTTAACAGTTGG 59.964 55.000 0.00 0.00 0.00 3.77
1238 1243 6.319715 ACAGTTGGGTTTATCTTGGGTAAAT 58.680 36.000 0.00 0.00 0.00 1.40
1239 1244 6.785466 ACAGTTGGGTTTATCTTGGGTAAATT 59.215 34.615 0.00 0.00 0.00 1.82
1240 1246 7.291416 ACAGTTGGGTTTATCTTGGGTAAATTT 59.709 33.333 0.00 0.00 0.00 1.82
1241 1247 8.154203 CAGTTGGGTTTATCTTGGGTAAATTTT 58.846 33.333 0.00 0.00 0.00 1.82
1325 1331 1.838077 GGGAGGCTTGTGTACCAGTAT 59.162 52.381 0.00 0.00 0.00 2.12
1460 1466 1.887242 GCACCATGCGCTCGGATAA 60.887 57.895 20.49 0.00 31.71 1.75
1721 1727 6.592607 GGTGAATTTACCGTTCATAGACTGAA 59.407 38.462 3.30 0.00 41.61 3.02
1833 1839 4.785669 TTTTTGTTGGTAAAGCGCATTG 57.214 36.364 11.47 0.00 0.00 2.82
1834 1840 3.444703 TTTGTTGGTAAAGCGCATTGT 57.555 38.095 11.47 0.00 0.00 2.71
1835 1841 2.697431 TGTTGGTAAAGCGCATTGTC 57.303 45.000 11.47 1.82 0.00 3.18
1836 1842 1.950216 TGTTGGTAAAGCGCATTGTCA 59.050 42.857 11.47 4.19 0.00 3.58
1837 1843 2.556189 TGTTGGTAAAGCGCATTGTCAT 59.444 40.909 11.47 0.00 0.00 3.06
1838 1844 3.005261 TGTTGGTAAAGCGCATTGTCATT 59.995 39.130 11.47 0.00 0.00 2.57
1839 1845 3.932545 TGGTAAAGCGCATTGTCATTT 57.067 38.095 11.47 1.42 0.00 2.32
1840 1846 3.832276 TGGTAAAGCGCATTGTCATTTC 58.168 40.909 11.47 0.00 0.00 2.17
1841 1847 3.505680 TGGTAAAGCGCATTGTCATTTCT 59.494 39.130 11.47 0.00 0.00 2.52
1842 1848 4.022416 TGGTAAAGCGCATTGTCATTTCTT 60.022 37.500 11.47 0.00 0.00 2.52
1843 1849 4.558860 GGTAAAGCGCATTGTCATTTCTTC 59.441 41.667 11.47 0.00 0.00 2.87
1844 1850 2.927553 AGCGCATTGTCATTTCTTCC 57.072 45.000 11.47 0.00 0.00 3.46
1845 1851 1.474077 AGCGCATTGTCATTTCTTCCC 59.526 47.619 11.47 0.00 0.00 3.97
1846 1852 1.202114 GCGCATTGTCATTTCTTCCCA 59.798 47.619 0.30 0.00 0.00 4.37
1847 1853 2.867429 CGCATTGTCATTTCTTCCCAC 58.133 47.619 0.00 0.00 0.00 4.61
1848 1854 2.228582 CGCATTGTCATTTCTTCCCACA 59.771 45.455 0.00 0.00 0.00 4.17
1849 1855 3.578688 GCATTGTCATTTCTTCCCACAC 58.421 45.455 0.00 0.00 0.00 3.82
1850 1856 3.256631 GCATTGTCATTTCTTCCCACACT 59.743 43.478 0.00 0.00 0.00 3.55
1851 1857 4.458989 GCATTGTCATTTCTTCCCACACTA 59.541 41.667 0.00 0.00 0.00 2.74
1852 1858 5.048083 GCATTGTCATTTCTTCCCACACTAA 60.048 40.000 0.00 0.00 0.00 2.24
1853 1859 6.516527 GCATTGTCATTTCTTCCCACACTAAA 60.517 38.462 0.00 0.00 0.00 1.85
1854 1860 6.385649 TTGTCATTTCTTCCCACACTAAAC 57.614 37.500 0.00 0.00 0.00 2.01
1855 1861 5.441500 TGTCATTTCTTCCCACACTAAACA 58.558 37.500 0.00 0.00 0.00 2.83
1856 1862 5.530915 TGTCATTTCTTCCCACACTAAACAG 59.469 40.000 0.00 0.00 0.00 3.16
1857 1863 5.048713 GTCATTTCTTCCCACACTAAACAGG 60.049 44.000 0.00 0.00 0.00 4.00
1858 1864 4.781775 TTTCTTCCCACACTAAACAGGA 57.218 40.909 0.00 0.00 0.00 3.86
1859 1865 4.993705 TTCTTCCCACACTAAACAGGAT 57.006 40.909 0.00 0.00 0.00 3.24
1860 1866 4.993705 TCTTCCCACACTAAACAGGATT 57.006 40.909 0.00 0.00 0.00 3.01
1861 1867 5.319043 TCTTCCCACACTAAACAGGATTT 57.681 39.130 0.00 0.00 0.00 2.17
1862 1868 5.070001 TCTTCCCACACTAAACAGGATTTG 58.930 41.667 0.00 0.00 0.00 2.32
1863 1869 3.153919 TCCCACACTAAACAGGATTTGC 58.846 45.455 0.00 0.00 0.00 3.68
1864 1870 2.890311 CCCACACTAAACAGGATTTGCA 59.110 45.455 0.00 0.00 0.00 4.08
1865 1871 3.511146 CCCACACTAAACAGGATTTGCAT 59.489 43.478 0.00 0.00 0.00 3.96
1866 1872 4.487948 CCACACTAAACAGGATTTGCATG 58.512 43.478 0.00 0.00 0.00 4.06
1867 1873 4.218200 CCACACTAAACAGGATTTGCATGA 59.782 41.667 0.00 0.00 31.50 3.07
1868 1874 5.278907 CCACACTAAACAGGATTTGCATGAA 60.279 40.000 0.00 0.00 31.50 2.57
1869 1875 6.215121 CACACTAAACAGGATTTGCATGAAA 58.785 36.000 0.00 0.00 31.50 2.69
1870 1876 6.144402 CACACTAAACAGGATTTGCATGAAAC 59.856 38.462 0.00 0.00 31.50 2.78
1871 1877 6.040842 ACACTAAACAGGATTTGCATGAAACT 59.959 34.615 0.00 0.00 31.50 2.66
1872 1878 6.364165 CACTAAACAGGATTTGCATGAAACTG 59.636 38.462 0.00 0.00 31.50 3.16
1873 1879 5.534207 AAACAGGATTTGCATGAAACTGA 57.466 34.783 9.04 0.00 31.50 3.41
1874 1880 5.534207 AACAGGATTTGCATGAAACTGAA 57.466 34.783 9.04 0.00 31.50 3.02
1875 1881 4.874970 ACAGGATTTGCATGAAACTGAAC 58.125 39.130 9.04 0.00 31.50 3.18
1876 1882 4.240096 CAGGATTTGCATGAAACTGAACC 58.760 43.478 0.00 0.00 0.00 3.62
1877 1883 3.896888 AGGATTTGCATGAAACTGAACCA 59.103 39.130 0.00 0.00 0.00 3.67
1907 1913 4.513406 TTTCTTCCCACACTAAACAGGT 57.487 40.909 0.00 0.00 0.00 4.00
2021 2028 5.670792 AAATTGCATTGGAGACATGTCAT 57.329 34.783 27.02 12.53 42.32 3.06
2069 2307 6.127366 GCCCTGAATTTGTATCCTTTGATTCA 60.127 38.462 0.00 0.00 33.80 2.57
2115 2353 4.651778 TGGAAACCAATTCTTCTCGTGAT 58.348 39.130 0.00 0.00 38.18 3.06
2138 2376 4.305989 TGAACATGGCTTTTGACTGTTC 57.694 40.909 0.00 6.75 41.57 3.18
2146 2384 3.184581 GGCTTTTGACTGTTCGTACTCTG 59.815 47.826 0.00 0.00 0.00 3.35
2308 2547 5.299279 GGGGTATGATTACAGTGAAACATGG 59.701 44.000 0.00 0.00 41.43 3.66
2348 2587 7.673641 ATTTTATGTGAATTAGGCCCAATCA 57.326 32.000 0.00 0.00 0.00 2.57
2594 2834 6.543465 TGTTCAACATCTTTGTGATCTGTCTT 59.457 34.615 0.00 0.00 35.83 3.01
2629 2873 1.333258 GCTTGCACGTTGTCTGACTTC 60.333 52.381 9.51 1.50 0.00 3.01
2642 2903 7.381408 CGTTGTCTGACTTCTACTTTTATGTGA 59.619 37.037 9.51 0.00 0.00 3.58
2669 2930 4.325119 GTCCCTCTACTTTTTGAAGGACC 58.675 47.826 0.00 0.00 37.67 4.46
2723 2984 5.655974 TGTCCACCATATGTGCATTATGTTT 59.344 36.000 14.80 3.44 44.01 2.83
2724 2985 5.978919 GTCCACCATATGTGCATTATGTTTG 59.021 40.000 14.80 11.86 44.01 2.93
2773 3034 9.804758 GTACTATTTGTCTACTCTTATGTGCTT 57.195 33.333 0.00 0.00 0.00 3.91
2861 3122 4.579647 TCCAAACAACCCCTAATAGGTC 57.420 45.455 5.49 0.00 36.27 3.85
2862 3123 3.917629 TCCAAACAACCCCTAATAGGTCA 59.082 43.478 5.49 0.00 36.27 4.02
2926 3187 0.106519 AACTGCTGCTGGACCACTTT 60.107 50.000 11.29 0.00 0.00 2.66
2975 3236 2.029470 GCTGCTAGATAGTGGTGGCTAG 60.029 54.545 0.00 0.00 34.80 3.42
2987 3248 3.041211 TGGTGGCTAGATACAGCAGATT 58.959 45.455 9.40 0.00 43.67 2.40
3003 3264 5.125097 CAGCAGATTGAATAGCAAGTTCCTT 59.875 40.000 5.13 0.00 40.42 3.36
3031 3299 0.392461 ATGCCTCGCGTTGTTGGTAT 60.392 50.000 5.77 4.46 0.00 2.73
3090 3358 8.488668 TCTCATTCTCATGGAAGTTTGATATGA 58.511 33.333 0.00 0.00 37.36 2.15
3273 3541 1.598601 GCTGCTGAGCTAAGCTGATTC 59.401 52.381 29.08 11.31 42.84 2.52
3587 3855 3.432326 GGACTCCAATTCGGCTTAGATGT 60.432 47.826 0.00 0.00 33.14 3.06
3698 3967 2.774687 GACGCTTAAGTCCCAAAAGGA 58.225 47.619 4.02 0.00 44.91 3.36
3710 3979 3.945285 TCCCAAAAGGATAACAGAATCGC 59.055 43.478 0.00 0.00 40.93 4.58
3711 3980 3.947834 CCCAAAAGGATAACAGAATCGCT 59.052 43.478 0.00 0.00 38.24 4.93
3712 3981 4.399303 CCCAAAAGGATAACAGAATCGCTT 59.601 41.667 0.00 0.00 38.24 4.68
3713 3982 5.335127 CCAAAAGGATAACAGAATCGCTTG 58.665 41.667 0.00 0.00 0.00 4.01
3714 3983 4.622701 AAAGGATAACAGAATCGCTTGC 57.377 40.909 0.00 0.00 0.00 4.01
3715 3984 2.205074 AGGATAACAGAATCGCTTGCG 58.795 47.619 8.87 8.87 0.00 4.85
3716 3985 1.933853 GGATAACAGAATCGCTTGCGT 59.066 47.619 14.70 0.00 0.00 5.24
3717 3986 2.033662 GGATAACAGAATCGCTTGCGTC 60.034 50.000 14.70 6.23 0.00 5.19
3718 3987 2.363788 TAACAGAATCGCTTGCGTCT 57.636 45.000 14.70 8.43 0.00 4.18
3719 3988 1.071605 AACAGAATCGCTTGCGTCTC 58.928 50.000 14.70 11.80 0.00 3.36
3720 3989 0.737715 ACAGAATCGCTTGCGTCTCC 60.738 55.000 14.70 3.66 0.00 3.71
3721 3990 0.459237 CAGAATCGCTTGCGTCTCCT 60.459 55.000 14.70 5.70 0.00 3.69
3722 3991 0.247736 AGAATCGCTTGCGTCTCCTT 59.752 50.000 14.70 2.80 0.00 3.36
3723 3992 1.079503 GAATCGCTTGCGTCTCCTTT 58.920 50.000 14.70 1.39 0.00 3.11
3724 3993 0.798776 AATCGCTTGCGTCTCCTTTG 59.201 50.000 14.70 0.00 0.00 2.77
3725 3994 1.639298 ATCGCTTGCGTCTCCTTTGC 61.639 55.000 14.70 0.00 0.00 3.68
3726 3995 2.563427 GCTTGCGTCTCCTTTGCC 59.437 61.111 0.00 0.00 0.00 4.52
3727 3996 1.968540 GCTTGCGTCTCCTTTGCCT 60.969 57.895 0.00 0.00 0.00 4.75
3728 3997 1.916697 GCTTGCGTCTCCTTTGCCTC 61.917 60.000 0.00 0.00 0.00 4.70
3729 3998 1.301677 CTTGCGTCTCCTTTGCCTCC 61.302 60.000 0.00 0.00 0.00 4.30
3730 3999 2.436824 GCGTCTCCTTTGCCTCCC 60.437 66.667 0.00 0.00 0.00 4.30
3731 4000 3.068881 CGTCTCCTTTGCCTCCCA 58.931 61.111 0.00 0.00 0.00 4.37
3732 4001 1.376037 CGTCTCCTTTGCCTCCCAC 60.376 63.158 0.00 0.00 0.00 4.61
3733 4002 1.376037 GTCTCCTTTGCCTCCCACG 60.376 63.158 0.00 0.00 0.00 4.94
3734 4003 1.535444 TCTCCTTTGCCTCCCACGA 60.535 57.895 0.00 0.00 0.00 4.35
3735 4004 0.909610 TCTCCTTTGCCTCCCACGAT 60.910 55.000 0.00 0.00 0.00 3.73
3736 4005 0.462759 CTCCTTTGCCTCCCACGATC 60.463 60.000 0.00 0.00 0.00 3.69
3737 4006 1.452108 CCTTTGCCTCCCACGATCC 60.452 63.158 0.00 0.00 0.00 3.36
3738 4007 1.299648 CTTTGCCTCCCACGATCCA 59.700 57.895 0.00 0.00 0.00 3.41
3845 4114 1.340017 GGGGAGCAAGATTACAGTGCA 60.340 52.381 0.00 0.00 40.83 4.57
3874 4237 9.899226 GACAAACTCTGAAGTAAATTAAGCAAT 57.101 29.630 0.00 0.00 33.48 3.56
3890 4253 0.095245 CAATCGCTTGTGCTACCGTG 59.905 55.000 0.00 0.00 36.97 4.94
3913 4276 0.168128 GGAACCAAACGCATCCTTCG 59.832 55.000 0.00 0.00 0.00 3.79
3959 4322 3.504520 GCAACTCGGGGAAGAATTTGTAA 59.495 43.478 0.00 0.00 0.00 2.41
4021 4388 8.430801 AACTTATAATGCAACTGCTAGAAGAG 57.569 34.615 4.16 0.00 42.66 2.85
4022 4389 7.786030 ACTTATAATGCAACTGCTAGAAGAGA 58.214 34.615 4.16 0.00 42.66 3.10
4023 4390 7.708752 ACTTATAATGCAACTGCTAGAAGAGAC 59.291 37.037 4.16 0.00 42.66 3.36
4024 4391 4.550076 AATGCAACTGCTAGAAGAGACT 57.450 40.909 4.16 0.00 42.66 3.24
4026 4393 2.893489 TGCAACTGCTAGAAGAGACTGA 59.107 45.455 4.16 0.00 42.66 3.41
4028 4395 3.925913 GCAACTGCTAGAAGAGACTGAAG 59.074 47.826 4.16 0.00 38.21 3.02
4029 4396 3.866883 ACTGCTAGAAGAGACTGAAGC 57.133 47.619 4.16 0.00 0.00 3.86
4095 4480 7.797062 ACACATAACAAATAAAGTGGGGTTTT 58.203 30.769 0.00 0.00 31.48 2.43
4256 4642 7.148804 GGGCATTTTATGACGAAAAAGAGTTTC 60.149 37.037 0.00 0.00 39.96 2.78
4273 4659 8.465273 AAGAGTTTCCCCATGCTTTATATTAC 57.535 34.615 0.00 0.00 0.00 1.89
4277 4663 9.041354 AGTTTCCCCATGCTTTATATTACAAAA 57.959 29.630 0.00 0.00 0.00 2.44
4282 4668 8.037758 CCCCATGCTTTATATTACAAAACAACA 58.962 33.333 0.00 0.00 0.00 3.33
4300 4686 4.071423 CAACAATCACCACACTACATCCA 58.929 43.478 0.00 0.00 0.00 3.41
4303 4689 5.136828 ACAATCACCACACTACATCCAAAA 58.863 37.500 0.00 0.00 0.00 2.44
4304 4690 5.241506 ACAATCACCACACTACATCCAAAAG 59.758 40.000 0.00 0.00 0.00 2.27
4305 4691 3.750371 TCACCACACTACATCCAAAAGG 58.250 45.455 0.00 0.00 0.00 3.11
4306 4692 2.819608 CACCACACTACATCCAAAAGGG 59.180 50.000 0.00 0.00 38.37 3.95
4307 4693 2.445525 ACCACACTACATCCAAAAGGGT 59.554 45.455 0.00 0.00 38.11 4.34
4308 4694 3.653836 ACCACACTACATCCAAAAGGGTA 59.346 43.478 0.00 0.00 38.11 3.69
4309 4695 4.007659 CCACACTACATCCAAAAGGGTAC 58.992 47.826 0.00 0.00 38.11 3.34
4310 4696 3.682858 CACACTACATCCAAAAGGGTACG 59.317 47.826 0.00 0.00 38.11 3.67
4311 4697 3.579586 ACACTACATCCAAAAGGGTACGA 59.420 43.478 0.00 0.00 38.11 3.43
4312 4698 3.930848 CACTACATCCAAAAGGGTACGAC 59.069 47.826 0.00 0.00 38.11 4.34
4313 4699 3.836562 ACTACATCCAAAAGGGTACGACT 59.163 43.478 0.00 0.00 38.11 4.18
4314 4700 5.018809 ACTACATCCAAAAGGGTACGACTA 58.981 41.667 0.00 0.00 38.11 2.59
4315 4701 5.659971 ACTACATCCAAAAGGGTACGACTAT 59.340 40.000 0.00 0.00 38.11 2.12
4316 4702 4.766375 ACATCCAAAAGGGTACGACTATG 58.234 43.478 0.00 0.00 38.11 2.23
4317 4703 3.899052 TCCAAAAGGGTACGACTATGG 57.101 47.619 11.57 11.57 38.11 2.74
4318 4704 2.502538 TCCAAAAGGGTACGACTATGGG 59.497 50.000 15.10 7.08 38.11 4.00
4319 4705 2.237893 CCAAAAGGGTACGACTATGGGT 59.762 50.000 0.00 0.00 0.00 4.51
4320 4706 3.451902 CCAAAAGGGTACGACTATGGGTA 59.548 47.826 0.00 0.00 0.00 3.69
4321 4707 4.442472 CCAAAAGGGTACGACTATGGGTAG 60.442 50.000 0.00 0.00 0.00 3.18
4322 4708 1.992538 AGGGTACGACTATGGGTAGC 58.007 55.000 0.00 0.00 36.63 3.58
4323 4709 0.964700 GGGTACGACTATGGGTAGCC 59.035 60.000 3.29 3.29 46.31 3.93
4324 4710 0.595095 GGTACGACTATGGGTAGCCG 59.405 60.000 6.45 0.00 39.36 5.52
4325 4711 0.039708 GTACGACTATGGGTAGCCGC 60.040 60.000 6.45 0.00 37.32 6.53
4326 4712 1.174712 TACGACTATGGGTAGCCGCC 61.175 60.000 6.45 0.00 37.32 6.13
4327 4713 2.495409 CGACTATGGGTAGCCGCCA 61.495 63.158 6.45 0.00 27.30 5.69
4328 4714 1.069258 GACTATGGGTAGCCGCCAC 59.931 63.158 6.45 0.00 0.00 5.01
4329 4715 2.379030 GACTATGGGTAGCCGCCACC 62.379 65.000 6.45 0.00 35.15 4.61
4330 4716 3.515316 CTATGGGTAGCCGCCACCG 62.515 68.421 6.45 0.00 36.89 4.94
4339 4725 4.473520 CCGCCACCGCCTGATCTT 62.474 66.667 0.00 0.00 0.00 2.40
4340 4726 3.197790 CGCCACCGCCTGATCTTG 61.198 66.667 0.00 0.00 0.00 3.02
4341 4727 3.512516 GCCACCGCCTGATCTTGC 61.513 66.667 0.00 0.00 0.00 4.01
4342 4728 2.046023 CCACCGCCTGATCTTGCA 60.046 61.111 7.62 0.00 0.00 4.08
4343 4729 1.675310 CCACCGCCTGATCTTGCAA 60.675 57.895 0.00 0.00 0.00 4.08
4344 4730 1.243342 CCACCGCCTGATCTTGCAAA 61.243 55.000 0.00 0.00 0.00 3.68
4345 4731 0.813184 CACCGCCTGATCTTGCAAAT 59.187 50.000 0.00 0.00 0.00 2.32
4346 4732 1.098050 ACCGCCTGATCTTGCAAATC 58.902 50.000 0.00 7.54 0.00 2.17
4347 4733 1.097232 CCGCCTGATCTTGCAAATCA 58.903 50.000 17.56 17.56 0.00 2.57
4348 4734 1.473677 CCGCCTGATCTTGCAAATCAA 59.526 47.619 18.51 8.45 32.96 2.57
4360 4746 6.039781 CTTGCAAATCAAGTTTTCACAAGG 57.960 37.500 0.00 0.00 45.48 3.61
4361 4747 5.336150 TGCAAATCAAGTTTTCACAAGGA 57.664 34.783 0.00 0.00 0.00 3.36
4362 4748 5.350633 TGCAAATCAAGTTTTCACAAGGAG 58.649 37.500 0.00 0.00 0.00 3.69
4363 4749 4.209911 GCAAATCAAGTTTTCACAAGGAGC 59.790 41.667 0.00 0.00 0.00 4.70
4364 4750 5.350633 CAAATCAAGTTTTCACAAGGAGCA 58.649 37.500 0.00 0.00 0.00 4.26
4365 4751 5.596836 AATCAAGTTTTCACAAGGAGCAA 57.403 34.783 0.00 0.00 0.00 3.91
4366 4752 4.637483 TCAAGTTTTCACAAGGAGCAAG 57.363 40.909 0.00 0.00 0.00 4.01
4367 4753 4.269183 TCAAGTTTTCACAAGGAGCAAGA 58.731 39.130 0.00 0.00 0.00 3.02
4368 4754 4.096382 TCAAGTTTTCACAAGGAGCAAGAC 59.904 41.667 0.00 0.00 0.00 3.01
4369 4755 3.620488 AGTTTTCACAAGGAGCAAGACA 58.380 40.909 0.00 0.00 0.00 3.41
4370 4756 4.016444 AGTTTTCACAAGGAGCAAGACAA 58.984 39.130 0.00 0.00 0.00 3.18
4371 4757 4.462483 AGTTTTCACAAGGAGCAAGACAAA 59.538 37.500 0.00 0.00 0.00 2.83
4372 4758 5.127682 AGTTTTCACAAGGAGCAAGACAAAT 59.872 36.000 0.00 0.00 0.00 2.32
4373 4759 4.572985 TTCACAAGGAGCAAGACAAATG 57.427 40.909 0.00 0.00 0.00 2.32
4374 4760 3.819368 TCACAAGGAGCAAGACAAATGA 58.181 40.909 0.00 0.00 0.00 2.57
4375 4761 4.206375 TCACAAGGAGCAAGACAAATGAA 58.794 39.130 0.00 0.00 0.00 2.57
4376 4762 4.276678 TCACAAGGAGCAAGACAAATGAAG 59.723 41.667 0.00 0.00 0.00 3.02
4377 4763 4.037208 CACAAGGAGCAAGACAAATGAAGT 59.963 41.667 0.00 0.00 0.00 3.01
4378 4764 4.037208 ACAAGGAGCAAGACAAATGAAGTG 59.963 41.667 0.00 0.00 0.00 3.16
4379 4765 3.152341 AGGAGCAAGACAAATGAAGTGG 58.848 45.455 0.00 0.00 0.00 4.00
4380 4766 2.229784 GGAGCAAGACAAATGAAGTGGG 59.770 50.000 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.067495 CCTCTAAATCGGCCGATCCTC 60.067 57.143 38.94 0.00 33.08 3.71
1 2 0.969894 CCTCTAAATCGGCCGATCCT 59.030 55.000 38.94 29.49 33.08 3.24
2 3 0.680061 ACCTCTAAATCGGCCGATCC 59.320 55.000 38.94 0.00 33.08 3.36
3 4 1.605712 CCACCTCTAAATCGGCCGATC 60.606 57.143 38.94 0.00 33.08 3.69
4 5 0.393077 CCACCTCTAAATCGGCCGAT 59.607 55.000 34.60 34.60 36.23 4.18
5 6 0.685131 TCCACCTCTAAATCGGCCGA 60.685 55.000 33.12 33.12 0.00 5.54
6 7 0.177141 TTCCACCTCTAAATCGGCCG 59.823 55.000 22.12 22.12 0.00 6.13
7 8 1.664873 GTTCCACCTCTAAATCGGCC 58.335 55.000 0.00 0.00 0.00 6.13
8 9 1.287425 CGTTCCACCTCTAAATCGGC 58.713 55.000 0.00 0.00 0.00 5.54
9 10 1.287425 GCGTTCCACCTCTAAATCGG 58.713 55.000 0.00 0.00 0.00 4.18
10 11 1.287425 GGCGTTCCACCTCTAAATCG 58.713 55.000 0.00 0.00 0.00 3.34
11 12 1.287425 CGGCGTTCCACCTCTAAATC 58.713 55.000 0.00 0.00 0.00 2.17
12 13 0.743345 GCGGCGTTCCACCTCTAAAT 60.743 55.000 9.37 0.00 0.00 1.40
13 14 1.375013 GCGGCGTTCCACCTCTAAA 60.375 57.895 9.37 0.00 0.00 1.85
14 15 2.263540 GCGGCGTTCCACCTCTAA 59.736 61.111 9.37 0.00 0.00 2.10
15 16 2.992689 TGCGGCGTTCCACCTCTA 60.993 61.111 9.37 0.00 0.00 2.43
16 17 4.379243 CTGCGGCGTTCCACCTCT 62.379 66.667 9.37 0.00 0.00 3.69
29 30 1.300931 AGCCGTATATGTGCCTGCG 60.301 57.895 2.82 0.00 0.00 5.18
38 39 0.393077 AAGCCGAAGCAGCCGTATAT 59.607 50.000 0.00 0.00 43.56 0.86
41 42 1.141019 CTAAGCCGAAGCAGCCGTA 59.859 57.895 0.00 0.00 43.56 4.02
42 43 2.125512 CTAAGCCGAAGCAGCCGT 60.126 61.111 0.00 0.00 43.56 5.68
53 54 2.833794 TCACACATTATCGCCTAAGCC 58.166 47.619 0.00 0.00 34.57 4.35
56 57 4.442893 CCTCCTTCACACATTATCGCCTAA 60.443 45.833 0.00 0.00 0.00 2.69
59 60 2.213499 CCTCCTTCACACATTATCGCC 58.787 52.381 0.00 0.00 0.00 5.54
65 66 7.092444 TGGAATCTTATACCTCCTTCACACATT 60.092 37.037 0.00 0.00 0.00 2.71
80 81 2.494059 GCCGCAAGCTGGAATCTTATA 58.506 47.619 0.00 0.00 38.99 0.98
107 108 0.823460 GAGGAGCTCCACTCTTCCAG 59.177 60.000 33.90 0.00 43.89 3.86
119 120 1.287739 AGCTTACAGGAGAGAGGAGCT 59.712 52.381 0.00 0.00 34.43 4.09
134 135 3.947196 CTGCCAACCACATGAATAGCTTA 59.053 43.478 0.00 0.00 0.00 3.09
140 141 1.203038 TGGACTGCCAACCACATGAAT 60.203 47.619 0.00 0.00 42.49 2.57
155 156 2.254152 TCCAGAGCCTGTATTGGACT 57.746 50.000 2.18 0.00 34.90 3.85
168 169 0.169230 CGTCTGTCCGAAGTCCAGAG 59.831 60.000 0.00 0.00 35.99 3.35
209 210 6.423604 CACACAAATAGCATGGTGATATCGTA 59.576 38.462 7.89 0.00 35.33 3.43
226 227 1.004044 CCTCCTCCTGCTCACACAAAT 59.996 52.381 0.00 0.00 0.00 2.32
248 249 7.260387 TGTATAAGAAATGTGGTCCACCTTA 57.740 36.000 19.57 17.60 36.82 2.69
250 251 5.772393 TGTATAAGAAATGTGGTCCACCT 57.228 39.130 19.57 6.77 36.82 4.00
263 264 6.262944 CCTGGCATAAGCACAATGTATAAGAA 59.737 38.462 0.00 0.00 44.61 2.52
264 265 5.764686 CCTGGCATAAGCACAATGTATAAGA 59.235 40.000 0.00 0.00 44.61 2.10
267 268 3.820467 GCCTGGCATAAGCACAATGTATA 59.180 43.478 15.17 0.00 44.61 1.47
278 279 1.212935 ACCTAACCTGCCTGGCATAAG 59.787 52.381 23.64 16.12 38.13 1.73
279 280 1.295020 ACCTAACCTGCCTGGCATAA 58.705 50.000 23.64 7.01 38.13 1.90
294 295 3.308117 CCTTGGTGAAGCATTGGTACCTA 60.308 47.826 14.36 5.86 32.68 3.08
295 296 2.555227 CCTTGGTGAAGCATTGGTACCT 60.555 50.000 14.36 0.00 32.68 3.08
299 300 1.620822 GACCTTGGTGAAGCATTGGT 58.379 50.000 0.00 7.21 0.00 3.67
318 319 0.467106 TCAGCTCCAGAGGGATCTCG 60.467 60.000 0.00 0.00 43.91 4.04
328 329 1.483827 TCTAGTTGGCATCAGCTCCAG 59.516 52.381 0.00 0.00 41.70 3.86
344 345 4.223923 AGTCCTCCACCTTTTCATGTCTAG 59.776 45.833 0.00 0.00 0.00 2.43
346 347 2.982488 AGTCCTCCACCTTTTCATGTCT 59.018 45.455 0.00 0.00 0.00 3.41
356 357 2.203998 CCCACCAGTCCTCCACCT 60.204 66.667 0.00 0.00 0.00 4.00
375 376 1.162800 GCACCATCTTCCTCGATGCC 61.163 60.000 0.00 0.00 39.51 4.40
399 400 0.526662 CGAAGACCTTCCGCTGTACT 59.473 55.000 4.36 0.00 36.27 2.73
413 414 4.455533 CCAACATGACAAAGGAATCGAAGA 59.544 41.667 0.00 0.00 45.75 2.87
438 439 3.023119 TCTGCTTCCACAAACACAACAT 58.977 40.909 0.00 0.00 0.00 2.71
444 445 2.727123 TTCCTCTGCTTCCACAAACA 57.273 45.000 0.00 0.00 0.00 2.83
445 446 2.229784 CCATTCCTCTGCTTCCACAAAC 59.770 50.000 0.00 0.00 0.00 2.93
449 451 2.420687 CCTACCATTCCTCTGCTTCCAC 60.421 54.545 0.00 0.00 0.00 4.02
482 484 7.591006 ATCTATTTCATTACACACGTCGTTT 57.409 32.000 0.00 0.00 0.00 3.60
501 503 5.833667 TGAGAATGTTCCTGACCGTATCTAT 59.166 40.000 0.00 0.00 0.00 1.98
536 538 0.748005 CTATCCCCAACGCCCACAAG 60.748 60.000 0.00 0.00 0.00 3.16
539 541 2.192175 CCTATCCCCAACGCCCAC 59.808 66.667 0.00 0.00 0.00 4.61
550 552 1.964933 GTAGCACTCCACTCCCTATCC 59.035 57.143 0.00 0.00 0.00 2.59
553 555 1.358103 AGTGTAGCACTCCACTCCCTA 59.642 52.381 0.00 0.00 41.21 3.53
597 599 1.878102 GCCTACACACCCACTTGACTG 60.878 57.143 0.00 0.00 0.00 3.51
598 600 0.396811 GCCTACACACCCACTTGACT 59.603 55.000 0.00 0.00 0.00 3.41
625 627 0.313987 CAAGCCGCATGCATCATCAT 59.686 50.000 19.57 0.00 44.83 2.45
628 630 1.391577 TTACAAGCCGCATGCATCAT 58.608 45.000 19.57 0.00 44.83 2.45
635 637 6.935741 TTTACAAGATATTACAAGCCGCAT 57.064 33.333 0.00 0.00 0.00 4.73
730 735 8.604890 TGAAAAATACCCAATTGAAACGTTTTC 58.395 29.630 15.89 15.49 0.00 2.29
731 736 8.494016 TGAAAAATACCCAATTGAAACGTTTT 57.506 26.923 15.89 7.75 0.00 2.43
732 737 8.555361 CATGAAAAATACCCAATTGAAACGTTT 58.445 29.630 14.57 14.57 0.00 3.60
733 738 7.713073 ACATGAAAAATACCCAATTGAAACGTT 59.287 29.630 7.12 0.00 0.00 3.99
734 739 7.213678 ACATGAAAAATACCCAATTGAAACGT 58.786 30.769 7.12 0.05 0.00 3.99
735 740 7.650834 ACATGAAAAATACCCAATTGAAACG 57.349 32.000 7.12 0.00 0.00 3.60
742 747 9.460019 CCCAATTTTACATGAAAAATACCCAAT 57.540 29.630 0.00 0.00 40.39 3.16
743 748 8.440771 ACCCAATTTTACATGAAAAATACCCAA 58.559 29.630 0.00 0.00 40.39 4.12
744 749 7.978925 ACCCAATTTTACATGAAAAATACCCA 58.021 30.769 0.00 0.00 40.39 4.51
761 766 8.994170 CGGTTTTACATGAAAAATACCCAATTT 58.006 29.630 0.00 0.00 38.75 1.82
824 829 0.886490 CTTTGCCAAGTGAGCCGACT 60.886 55.000 0.00 0.00 0.00 4.18
986 991 2.912542 CCATCTCGCCGCCCTCTA 60.913 66.667 0.00 0.00 0.00 2.43
1074 1079 0.980231 GCTGATCTCCCTCACCTGGT 60.980 60.000 0.00 0.00 0.00 4.00
1127 1132 7.119699 CAGCAATACTATCCAGACAGTTTCAAA 59.880 37.037 0.00 0.00 0.00 2.69
1213 1218 4.193240 ACCCAAGATAAACCCAACTGTT 57.807 40.909 0.00 0.00 0.00 3.16
1217 1222 8.911918 AAAAATTTACCCAAGATAAACCCAAC 57.088 30.769 0.00 0.00 0.00 3.77
1240 1246 2.516277 TCCTGGAAGAAGACCCCAAAAA 59.484 45.455 0.00 0.00 34.07 1.94
1241 1247 2.140224 TCCTGGAAGAAGACCCCAAAA 58.860 47.619 0.00 0.00 34.07 2.44
1325 1331 2.280552 ACTCGCCCGCTTCTTGGTA 61.281 57.895 0.00 0.00 0.00 3.25
1460 1466 1.956477 ACTTCGCTGAAATGCAGGTTT 59.044 42.857 0.00 0.00 45.03 3.27
1585 1591 1.264020 CCCACTTCACACATCAACACG 59.736 52.381 0.00 0.00 0.00 4.49
1586 1592 1.608590 CCCCACTTCACACATCAACAC 59.391 52.381 0.00 0.00 0.00 3.32
1774 1780 3.192001 CACAGCATGCAAAGTACAAGGAT 59.808 43.478 21.98 0.00 42.53 3.24
1829 1835 6.573664 TTAGTGTGGGAAGAAATGACAATG 57.426 37.500 0.00 0.00 0.00 2.82
1830 1836 6.549364 TGTTTAGTGTGGGAAGAAATGACAAT 59.451 34.615 0.00 0.00 0.00 2.71
1831 1837 5.888724 TGTTTAGTGTGGGAAGAAATGACAA 59.111 36.000 0.00 0.00 0.00 3.18
1832 1838 5.441500 TGTTTAGTGTGGGAAGAAATGACA 58.558 37.500 0.00 0.00 0.00 3.58
1833 1839 5.048713 CCTGTTTAGTGTGGGAAGAAATGAC 60.049 44.000 0.00 0.00 0.00 3.06
1834 1840 5.070001 CCTGTTTAGTGTGGGAAGAAATGA 58.930 41.667 0.00 0.00 0.00 2.57
1835 1841 5.070001 TCCTGTTTAGTGTGGGAAGAAATG 58.930 41.667 0.00 0.00 0.00 2.32
1836 1842 5.319043 TCCTGTTTAGTGTGGGAAGAAAT 57.681 39.130 0.00 0.00 0.00 2.17
1837 1843 4.781775 TCCTGTTTAGTGTGGGAAGAAA 57.218 40.909 0.00 0.00 0.00 2.52
1838 1844 4.993705 ATCCTGTTTAGTGTGGGAAGAA 57.006 40.909 0.00 0.00 0.00 2.52
1839 1845 4.993705 AATCCTGTTTAGTGTGGGAAGA 57.006 40.909 0.00 0.00 0.00 2.87
1840 1846 4.321230 GCAAATCCTGTTTAGTGTGGGAAG 60.321 45.833 0.00 0.00 0.00 3.46
1841 1847 3.572255 GCAAATCCTGTTTAGTGTGGGAA 59.428 43.478 0.00 0.00 0.00 3.97
1842 1848 3.153919 GCAAATCCTGTTTAGTGTGGGA 58.846 45.455 0.00 0.00 0.00 4.37
1843 1849 2.890311 TGCAAATCCTGTTTAGTGTGGG 59.110 45.455 0.00 0.00 0.00 4.61
1844 1850 4.218200 TCATGCAAATCCTGTTTAGTGTGG 59.782 41.667 0.00 0.00 0.00 4.17
1845 1851 5.375417 TCATGCAAATCCTGTTTAGTGTG 57.625 39.130 0.00 0.00 0.00 3.82
1846 1852 6.040842 AGTTTCATGCAAATCCTGTTTAGTGT 59.959 34.615 0.00 0.00 0.00 3.55
1847 1853 6.364165 CAGTTTCATGCAAATCCTGTTTAGTG 59.636 38.462 0.00 0.00 0.00 2.74
1848 1854 6.265196 TCAGTTTCATGCAAATCCTGTTTAGT 59.735 34.615 0.00 0.00 0.00 2.24
1849 1855 6.680810 TCAGTTTCATGCAAATCCTGTTTAG 58.319 36.000 0.00 0.00 0.00 1.85
1850 1856 6.647334 TCAGTTTCATGCAAATCCTGTTTA 57.353 33.333 0.00 0.00 0.00 2.01
1851 1857 5.534207 TCAGTTTCATGCAAATCCTGTTT 57.466 34.783 0.00 0.00 0.00 2.83
1852 1858 5.291971 GTTCAGTTTCATGCAAATCCTGTT 58.708 37.500 0.00 0.00 0.00 3.16
1853 1859 4.262164 GGTTCAGTTTCATGCAAATCCTGT 60.262 41.667 0.00 0.00 0.00 4.00
1854 1860 4.240096 GGTTCAGTTTCATGCAAATCCTG 58.760 43.478 0.00 0.00 0.00 3.86
1855 1861 3.896888 TGGTTCAGTTTCATGCAAATCCT 59.103 39.130 0.00 0.00 0.00 3.24
1856 1862 4.255833 TGGTTCAGTTTCATGCAAATCC 57.744 40.909 0.00 0.00 0.00 3.01
1857 1863 7.464977 GCAATATGGTTCAGTTTCATGCAAATC 60.465 37.037 0.00 0.00 0.00 2.17
1858 1864 6.314400 GCAATATGGTTCAGTTTCATGCAAAT 59.686 34.615 0.00 0.00 0.00 2.32
1859 1865 5.638657 GCAATATGGTTCAGTTTCATGCAAA 59.361 36.000 0.00 0.00 0.00 3.68
1860 1866 5.047164 AGCAATATGGTTCAGTTTCATGCAA 60.047 36.000 0.00 0.00 0.00 4.08
1861 1867 4.463539 AGCAATATGGTTCAGTTTCATGCA 59.536 37.500 0.00 0.00 0.00 3.96
1862 1868 5.002464 AGCAATATGGTTCAGTTTCATGC 57.998 39.130 0.00 0.00 0.00 4.06
1863 1869 9.241317 GAAATAGCAATATGGTTCAGTTTCATG 57.759 33.333 0.00 0.00 0.00 3.07
1864 1870 9.193806 AGAAATAGCAATATGGTTCAGTTTCAT 57.806 29.630 0.00 0.00 0.00 2.57
1865 1871 8.579850 AGAAATAGCAATATGGTTCAGTTTCA 57.420 30.769 0.00 0.00 0.00 2.69
1866 1872 9.508567 GAAGAAATAGCAATATGGTTCAGTTTC 57.491 33.333 0.00 0.00 0.00 2.78
1867 1873 8.470002 GGAAGAAATAGCAATATGGTTCAGTTT 58.530 33.333 0.00 0.00 0.00 2.66
1868 1874 7.068716 GGGAAGAAATAGCAATATGGTTCAGTT 59.931 37.037 0.00 0.00 0.00 3.16
1869 1875 6.547510 GGGAAGAAATAGCAATATGGTTCAGT 59.452 38.462 0.00 0.00 0.00 3.41
1870 1876 6.547141 TGGGAAGAAATAGCAATATGGTTCAG 59.453 38.462 0.00 0.00 0.00 3.02
1871 1877 6.321181 GTGGGAAGAAATAGCAATATGGTTCA 59.679 38.462 0.00 0.00 0.00 3.18
1872 1878 6.321181 TGTGGGAAGAAATAGCAATATGGTTC 59.679 38.462 0.00 0.00 0.00 3.62
1873 1879 6.096846 GTGTGGGAAGAAATAGCAATATGGTT 59.903 38.462 0.00 0.00 0.00 3.67
1874 1880 5.594317 GTGTGGGAAGAAATAGCAATATGGT 59.406 40.000 0.00 0.00 0.00 3.55
1875 1881 5.829924 AGTGTGGGAAGAAATAGCAATATGG 59.170 40.000 0.00 0.00 0.00 2.74
1876 1882 6.949352 AGTGTGGGAAGAAATAGCAATATG 57.051 37.500 0.00 0.00 0.00 1.78
1877 1883 8.903820 GTTTAGTGTGGGAAGAAATAGCAATAT 58.096 33.333 0.00 0.00 0.00 1.28
1927 1933 5.819825 ACACAGAAAAGAAGGTTGTTCTC 57.180 39.130 0.00 0.00 0.00 2.87
2021 2028 4.335315 CCAGACAAGCAAACACAGAAAGTA 59.665 41.667 0.00 0.00 0.00 2.24
2069 2307 7.605691 CCAGACAAGAACACAATTAAGAGAGAT 59.394 37.037 0.00 0.00 0.00 2.75
2115 2353 5.334802 CGAACAGTCAAAAGCCATGTTCATA 60.335 40.000 14.53 0.00 46.34 2.15
2138 2376 3.325870 TGAAGCATTGGAACAGAGTACG 58.674 45.455 0.00 0.00 42.39 3.67
2146 2384 6.595716 AGAGTTATACACTGAAGCATTGGAAC 59.404 38.462 0.00 0.00 35.01 3.62
2235 2474 5.422145 AGCAACAAAAATGAAGCTGAACTT 58.578 33.333 0.00 0.00 42.98 2.66
2308 2547 8.352201 TCACATAAAATTAGGACATATGCTTGC 58.648 33.333 1.58 0.00 0.00 4.01
2343 2582 5.995897 TGCAATGACCTCATAGAGATGATTG 59.004 40.000 0.00 0.00 41.33 2.67
2348 2587 7.914859 TGATATTGCAATGACCTCATAGAGAT 58.085 34.615 22.27 2.18 35.10 2.75
2459 2698 4.628074 TCTGAGTAGTACAACTTTGTGGC 58.372 43.478 4.82 0.00 42.31 5.01
2594 2834 6.851609 ACGTGCAAGCTCATATAATTTTTCA 58.148 32.000 0.00 0.00 0.00 2.69
2606 2846 0.179086 TCAGACAACGTGCAAGCTCA 60.179 50.000 0.00 0.00 0.00 4.26
2629 2873 7.112779 AGAGGGACCATTTCACATAAAAGTAG 58.887 38.462 0.00 0.00 0.00 2.57
2642 2903 5.775195 CCTTCAAAAAGTAGAGGGACCATTT 59.225 40.000 0.00 0.00 33.16 2.32
2723 2984 7.497595 ACTAATGATTATCTCCGCAAAGTACA 58.502 34.615 0.00 0.00 0.00 2.90
2724 2985 7.948278 ACTAATGATTATCTCCGCAAAGTAC 57.052 36.000 0.00 0.00 0.00 2.73
2861 3122 5.375417 TCACTTGTAAATGGCTCAATGTG 57.625 39.130 0.00 0.00 0.00 3.21
2862 3123 6.403866 TTTCACTTGTAAATGGCTCAATGT 57.596 33.333 0.00 0.00 0.00 2.71
2941 3202 9.838975 CACTATCTAGCAGCATATATAGCATAC 57.161 37.037 0.00 0.60 0.00 2.39
2975 3236 6.857777 ACTTGCTATTCAATCTGCTGTATC 57.142 37.500 0.00 0.00 33.57 2.24
3003 3264 2.373540 ACGCGAGGCATAAACTTACA 57.626 45.000 15.93 0.00 0.00 2.41
3031 3299 7.917730 TGGTGGTTACTAAGGCAGTATAATA 57.082 36.000 0.00 0.00 39.51 0.98
3090 3358 4.012374 CAGGTGTGGAATCTGCAGTTTAT 58.988 43.478 14.67 0.00 0.00 1.40
3461 3729 2.905415 ACCAGGATTCTGCAAATCCA 57.095 45.000 27.65 0.00 46.70 3.41
3695 3964 2.205074 CGCAAGCGATTCTGTTATCCT 58.795 47.619 9.11 0.00 42.83 3.24
3697 3966 2.860735 AGACGCAAGCGATTCTGTTATC 59.139 45.455 22.30 4.68 42.83 1.75
3698 3967 2.860735 GAGACGCAAGCGATTCTGTTAT 59.139 45.455 22.30 0.00 42.83 1.89
3699 3968 2.259618 GAGACGCAAGCGATTCTGTTA 58.740 47.619 22.30 0.00 42.83 2.41
3700 3969 1.071605 GAGACGCAAGCGATTCTGTT 58.928 50.000 22.30 0.00 42.83 3.16
3701 3970 0.737715 GGAGACGCAAGCGATTCTGT 60.738 55.000 22.30 0.00 42.83 3.41
3702 3971 0.459237 AGGAGACGCAAGCGATTCTG 60.459 55.000 22.30 0.00 42.83 3.02
3703 3972 0.247736 AAGGAGACGCAAGCGATTCT 59.752 50.000 22.30 14.10 42.83 2.40
3704 3973 1.079503 AAAGGAGACGCAAGCGATTC 58.920 50.000 22.30 16.17 42.83 2.52
3705 3974 0.798776 CAAAGGAGACGCAAGCGATT 59.201 50.000 22.30 8.28 42.83 3.34
3706 3975 1.639298 GCAAAGGAGACGCAAGCGAT 61.639 55.000 22.30 9.03 42.83 4.58
3707 3976 2.317609 GCAAAGGAGACGCAAGCGA 61.318 57.895 22.30 0.00 42.83 4.93
3708 3977 2.174349 GCAAAGGAGACGCAAGCG 59.826 61.111 13.50 13.50 46.03 4.68
3709 3978 1.916697 GAGGCAAAGGAGACGCAAGC 61.917 60.000 0.00 0.00 45.62 4.01
3711 3980 1.302511 GGAGGCAAAGGAGACGCAA 60.303 57.895 0.00 0.00 0.00 4.85
3712 3981 2.347490 GGAGGCAAAGGAGACGCA 59.653 61.111 0.00 0.00 0.00 5.24
3713 3982 2.436824 GGGAGGCAAAGGAGACGC 60.437 66.667 0.00 0.00 0.00 5.19
3714 3983 1.376037 GTGGGAGGCAAAGGAGACG 60.376 63.158 0.00 0.00 0.00 4.18
3715 3984 1.376037 CGTGGGAGGCAAAGGAGAC 60.376 63.158 0.00 0.00 0.00 3.36
3716 3985 0.909610 ATCGTGGGAGGCAAAGGAGA 60.910 55.000 0.00 0.00 0.00 3.71
3717 3986 0.462759 GATCGTGGGAGGCAAAGGAG 60.463 60.000 0.00 0.00 0.00 3.69
3718 3987 1.602237 GATCGTGGGAGGCAAAGGA 59.398 57.895 0.00 0.00 0.00 3.36
3719 3988 1.452108 GGATCGTGGGAGGCAAAGG 60.452 63.158 0.00 0.00 0.00 3.11
3720 3989 0.322456 TTGGATCGTGGGAGGCAAAG 60.322 55.000 0.00 0.00 0.00 2.77
3721 3990 0.608035 GTTGGATCGTGGGAGGCAAA 60.608 55.000 0.00 0.00 0.00 3.68
3722 3991 1.002624 GTTGGATCGTGGGAGGCAA 60.003 57.895 0.00 0.00 0.00 4.52
3723 3992 2.668632 GTTGGATCGTGGGAGGCA 59.331 61.111 0.00 0.00 0.00 4.75
3724 3993 2.124695 GGTTGGATCGTGGGAGGC 60.125 66.667 0.00 0.00 0.00 4.70
3725 3994 2.590092 GGGTTGGATCGTGGGAGG 59.410 66.667 0.00 0.00 0.00 4.30
3726 3995 2.590092 GGGGTTGGATCGTGGGAG 59.410 66.667 0.00 0.00 0.00 4.30
3727 3996 3.012722 GGGGGTTGGATCGTGGGA 61.013 66.667 0.00 0.00 0.00 4.37
3728 3997 3.015145 AGGGGGTTGGATCGTGGG 61.015 66.667 0.00 0.00 0.00 4.61
3729 3998 2.590092 GAGGGGGTTGGATCGTGG 59.410 66.667 0.00 0.00 0.00 4.94
3730 3999 2.590092 GGAGGGGGTTGGATCGTG 59.410 66.667 0.00 0.00 0.00 4.35
3731 4000 3.081409 CGGAGGGGGTTGGATCGT 61.081 66.667 0.00 0.00 0.00 3.73
3732 4001 4.547367 GCGGAGGGGGTTGGATCG 62.547 72.222 0.00 0.00 0.00 3.69
3733 4002 4.191015 GGCGGAGGGGGTTGGATC 62.191 72.222 0.00 0.00 0.00 3.36
3738 4007 4.760220 ATCAGGGCGGAGGGGGTT 62.760 66.667 0.00 0.00 0.00 4.11
3819 4088 2.280628 GTAATCTTGCTCCCCGTTCTG 58.719 52.381 0.00 0.00 0.00 3.02
3845 4114 9.952188 GCTTAATTTACTTCAGAGTTTGTCTTT 57.048 29.630 0.00 0.00 37.33 2.52
3890 4253 1.212751 GATGCGTTTGGTTCCCTGC 59.787 57.895 0.00 0.00 0.00 4.85
3904 4267 2.032178 GTGGCAGTTATTCGAAGGATGC 59.968 50.000 15.22 15.22 0.00 3.91
3913 4276 5.177327 CCATTGTTGTTTGTGGCAGTTATTC 59.823 40.000 0.00 0.00 0.00 1.75
4021 4388 0.582005 GTTGTCGTGTGGCTTCAGTC 59.418 55.000 0.00 0.00 0.00 3.51
4022 4389 0.107897 TGTTGTCGTGTGGCTTCAGT 60.108 50.000 0.00 0.00 0.00 3.41
4023 4390 1.229428 ATGTTGTCGTGTGGCTTCAG 58.771 50.000 0.00 0.00 0.00 3.02
4024 4391 2.139917 GTATGTTGTCGTGTGGCTTCA 58.860 47.619 0.00 0.00 0.00 3.02
4026 4393 2.248280 TGTATGTTGTCGTGTGGCTT 57.752 45.000 0.00 0.00 0.00 4.35
4028 4395 2.289547 ACTTTGTATGTTGTCGTGTGGC 59.710 45.455 0.00 0.00 0.00 5.01
4029 4396 4.545823 AACTTTGTATGTTGTCGTGTGG 57.454 40.909 0.00 0.00 0.00 4.17
4117 4502 9.227777 GTAACCAGTGTAAATAACAGAGGAATT 57.772 33.333 3.58 0.00 39.29 2.17
4124 4509 9.136952 GTCTAGTGTAACCAGTGTAAATAACAG 57.863 37.037 0.00 0.00 36.51 3.16
4181 4566 9.268282 TCTTCTGTTAAAATGTACTCCCTCTAT 57.732 33.333 0.00 0.00 0.00 1.98
4182 4567 8.660295 TCTTCTGTTAAAATGTACTCCCTCTA 57.340 34.615 0.00 0.00 0.00 2.43
4183 4568 7.554959 TCTTCTGTTAAAATGTACTCCCTCT 57.445 36.000 0.00 0.00 0.00 3.69
4184 4569 8.794335 ATTCTTCTGTTAAAATGTACTCCCTC 57.206 34.615 0.00 0.00 0.00 4.30
4185 4570 9.892130 CTATTCTTCTGTTAAAATGTACTCCCT 57.108 33.333 0.00 0.00 0.00 4.20
4186 4571 9.110502 CCTATTCTTCTGTTAAAATGTACTCCC 57.889 37.037 0.00 0.00 0.00 4.30
4187 4572 9.886132 TCCTATTCTTCTGTTAAAATGTACTCC 57.114 33.333 0.00 0.00 0.00 3.85
4224 4609 9.796120 CTTTTTCGTCATAAAATGCCCTTTATA 57.204 29.630 1.09 0.00 31.67 0.98
4232 4617 7.148804 GGGAAACTCTTTTTCGTCATAAAATGC 60.149 37.037 0.00 0.00 0.00 3.56
4241 4627 3.611766 GCATGGGGAAACTCTTTTTCGTC 60.612 47.826 0.00 0.00 0.00 4.20
4243 4629 2.558359 AGCATGGGGAAACTCTTTTTCG 59.442 45.455 0.00 0.00 0.00 3.46
4256 4642 8.037758 TGTTGTTTTGTAATATAAAGCATGGGG 58.962 33.333 0.62 0.00 30.28 4.96
4273 4659 5.645624 TGTAGTGTGGTGATTGTTGTTTTG 58.354 37.500 0.00 0.00 0.00 2.44
4277 4663 4.072131 GGATGTAGTGTGGTGATTGTTGT 58.928 43.478 0.00 0.00 0.00 3.32
4282 4668 4.766891 CCTTTTGGATGTAGTGTGGTGATT 59.233 41.667 0.00 0.00 44.07 2.57
4300 4686 3.133542 GCTACCCATAGTCGTACCCTTTT 59.866 47.826 0.00 0.00 0.00 2.27
4303 4689 1.480127 GGCTACCCATAGTCGTACCCT 60.480 57.143 0.00 0.00 0.00 4.34
4304 4690 0.964700 GGCTACCCATAGTCGTACCC 59.035 60.000 0.00 0.00 0.00 3.69
4310 4696 1.069258 GTGGCGGCTACCCATAGTC 59.931 63.158 11.43 0.00 34.34 2.59
4311 4697 2.440817 GGTGGCGGCTACCCATAGT 61.441 63.158 23.53 0.00 34.34 2.12
4312 4698 2.426023 GGTGGCGGCTACCCATAG 59.574 66.667 23.53 0.00 34.34 2.23
4313 4699 3.542676 CGGTGGCGGCTACCCATA 61.543 66.667 27.01 0.00 34.66 2.74
4322 4708 4.473520 AAGATCAGGCGGTGGCGG 62.474 66.667 0.00 0.00 41.24 6.13
4323 4709 3.197790 CAAGATCAGGCGGTGGCG 61.198 66.667 0.00 0.00 41.24 5.69
4324 4710 3.512516 GCAAGATCAGGCGGTGGC 61.513 66.667 0.00 0.00 38.90 5.01
4325 4711 1.243342 TTTGCAAGATCAGGCGGTGG 61.243 55.000 0.00 0.00 0.00 4.61
4326 4712 0.813184 ATTTGCAAGATCAGGCGGTG 59.187 50.000 0.00 0.00 0.00 4.94
4327 4713 1.098050 GATTTGCAAGATCAGGCGGT 58.902 50.000 0.00 0.00 0.00 5.68
4328 4714 1.097232 TGATTTGCAAGATCAGGCGG 58.903 50.000 15.74 0.00 0.00 6.13
4329 4715 2.925578 TTGATTTGCAAGATCAGGCG 57.074 45.000 17.70 0.00 35.17 5.52
4338 4724 5.728471 TCCTTGTGAAAACTTGATTTGCAA 58.272 33.333 0.00 0.00 37.60 4.08
4339 4725 5.336150 TCCTTGTGAAAACTTGATTTGCA 57.664 34.783 0.00 0.00 32.96 4.08
4340 4726 4.209911 GCTCCTTGTGAAAACTTGATTTGC 59.790 41.667 0.00 0.00 0.00 3.68
4341 4727 5.350633 TGCTCCTTGTGAAAACTTGATTTG 58.649 37.500 0.00 0.00 0.00 2.32
4342 4728 5.596836 TGCTCCTTGTGAAAACTTGATTT 57.403 34.783 0.00 0.00 0.00 2.17
4343 4729 5.360714 TCTTGCTCCTTGTGAAAACTTGATT 59.639 36.000 0.00 0.00 0.00 2.57
4344 4730 4.889409 TCTTGCTCCTTGTGAAAACTTGAT 59.111 37.500 0.00 0.00 0.00 2.57
4345 4731 4.096382 GTCTTGCTCCTTGTGAAAACTTGA 59.904 41.667 0.00 0.00 0.00 3.02
4346 4732 4.142403 TGTCTTGCTCCTTGTGAAAACTTG 60.142 41.667 0.00 0.00 0.00 3.16
4347 4733 4.016444 TGTCTTGCTCCTTGTGAAAACTT 58.984 39.130 0.00 0.00 0.00 2.66
4348 4734 3.620488 TGTCTTGCTCCTTGTGAAAACT 58.380 40.909 0.00 0.00 0.00 2.66
4349 4735 4.370364 TTGTCTTGCTCCTTGTGAAAAC 57.630 40.909 0.00 0.00 0.00 2.43
4350 4736 5.126869 TCATTTGTCTTGCTCCTTGTGAAAA 59.873 36.000 0.00 0.00 0.00 2.29
4351 4737 4.644234 TCATTTGTCTTGCTCCTTGTGAAA 59.356 37.500 0.00 0.00 0.00 2.69
4352 4738 4.206375 TCATTTGTCTTGCTCCTTGTGAA 58.794 39.130 0.00 0.00 0.00 3.18
4353 4739 3.819368 TCATTTGTCTTGCTCCTTGTGA 58.181 40.909 0.00 0.00 0.00 3.58
4354 4740 4.037208 ACTTCATTTGTCTTGCTCCTTGTG 59.963 41.667 0.00 0.00 0.00 3.33
4355 4741 4.037208 CACTTCATTTGTCTTGCTCCTTGT 59.963 41.667 0.00 0.00 0.00 3.16
4356 4742 4.543692 CACTTCATTTGTCTTGCTCCTTG 58.456 43.478 0.00 0.00 0.00 3.61
4357 4743 3.571401 CCACTTCATTTGTCTTGCTCCTT 59.429 43.478 0.00 0.00 0.00 3.36
4358 4744 3.152341 CCACTTCATTTGTCTTGCTCCT 58.848 45.455 0.00 0.00 0.00 3.69
4359 4745 2.229784 CCCACTTCATTTGTCTTGCTCC 59.770 50.000 0.00 0.00 0.00 4.70
4360 4746 3.565905 CCCACTTCATTTGTCTTGCTC 57.434 47.619 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.