Multiple sequence alignment - TraesCS7D01G295900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G295900 chr7D 100.000 4592 0 0 1 4592 371733005 371728414 0.000000e+00 8480
1 TraesCS7D01G295900 chr7A 96.231 4166 103 15 377 4529 409311858 409307734 0.000000e+00 6774
2 TraesCS7D01G295900 chr7A 94.332 247 14 0 1 247 416346291 416346045 3.350000e-101 379
3 TraesCS7D01G295900 chr7A 96.296 135 5 0 243 377 409312022 409311888 5.980000e-54 222
4 TraesCS7D01G295900 chr7B 95.347 3890 115 17 476 4351 366128020 366124183 0.000000e+00 6120
5 TraesCS7D01G295900 chr7B 91.344 543 29 3 4020 4562 366124188 366123664 0.000000e+00 726
6 TraesCS7D01G295900 chr7B 83.698 503 63 12 1 490 366129736 366129240 1.510000e-124 457


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G295900 chr7D 371728414 371733005 4591 True 8480.000000 8480 100.000000 1 4592 1 chr7D.!!$R1 4591
1 TraesCS7D01G295900 chr7A 409307734 409312022 4288 True 3498.000000 6774 96.263500 243 4529 2 chr7A.!!$R2 4286
2 TraesCS7D01G295900 chr7B 366123664 366129736 6072 True 2434.333333 6120 90.129667 1 4562 3 chr7B.!!$R1 4561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 385 0.107410 TGACCAACTGCAAGAACCGT 60.107 50.000 0.00 0.0 37.43 4.83 F
584 1854 0.250901 AATGTCATATCAGCCGGGCC 60.251 55.000 17.02 0.0 0.00 5.80 F
1711 2999 0.322816 TCTCCCATGTGCCTTCTTGC 60.323 55.000 0.00 0.0 0.00 4.01 F
2113 3401 1.614317 CCAAGGCGGGAGAACTTCAAT 60.614 52.381 0.00 0.0 0.00 2.57 F
2727 4015 1.421268 TCCTGCTCTCTTTTTGCCTCA 59.579 47.619 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1287 2559 0.602638 AACTCGCAACAGGATCGCAA 60.603 50.000 0.0 0.0 0.00 4.85 R
1882 3170 1.217001 TTGTCACACATGTCGTCTGC 58.783 50.000 0.0 0.0 0.00 4.26 R
2571 3859 1.376037 GGAAACAGTGGCTCCCTCG 60.376 63.158 0.0 0.0 0.00 4.63 R
3507 4797 3.538591 CTCAGTAAATGATGGCTGCTCA 58.461 45.455 0.0 0.0 37.28 4.26 R
4271 5563 0.033796 CATGCCTGTGGGGTCTCATT 60.034 55.000 0.0 0.0 37.43 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.587194 CTCCAGGGCGAATCAGCG 60.587 66.667 0.00 0.00 38.18 5.18
29 30 3.449227 AGGGCGAATCAGCGACGA 61.449 61.111 0.00 0.00 41.12 4.20
31 32 2.506217 GGCGAATCAGCGACGACA 60.506 61.111 0.00 0.00 38.18 4.35
37 38 2.092055 CGAATCAGCGACGACAAATTCA 59.908 45.455 0.00 0.00 0.00 2.57
40 41 3.722555 TCAGCGACGACAAATTCAATC 57.277 42.857 0.00 0.00 0.00 2.67
61 62 2.097466 CGCCAATTATTTGACTCGCCTT 59.903 45.455 0.00 0.00 34.60 4.35
69 70 0.881118 TTGACTCGCCTTGATTTGGC 59.119 50.000 0.00 0.00 46.42 4.52
74 75 3.365535 GCCTTGATTTGGCGTGGT 58.634 55.556 0.00 0.00 41.03 4.16
106 107 2.765699 GCCATCCAAATGAGCCCTAAAA 59.234 45.455 0.00 0.00 34.61 1.52
143 144 1.203052 GGTGGTTGAGCACATGAATGG 59.797 52.381 14.42 0.00 0.00 3.16
149 150 2.448453 TGAGCACATGAATGGATGCAA 58.552 42.857 0.00 0.00 40.63 4.08
168 173 1.562672 AAGGCAGGCGATACACCCTT 61.563 55.000 0.00 0.00 0.00 3.95
177 182 2.159282 GCGATACACCCTTCTTCTCGAA 60.159 50.000 0.00 0.00 0.00 3.71
179 184 4.106197 CGATACACCCTTCTTCTCGAAAG 58.894 47.826 0.00 0.00 0.00 2.62
238 243 7.974675 TCAGATTTCATAGTCGGATTTCAAAC 58.025 34.615 0.00 0.00 0.00 2.93
288 293 8.818141 ACATATCAACACGGAATTCACTATAG 57.182 34.615 7.93 0.00 0.00 1.31
377 382 2.290641 ACGAATGACCAACTGCAAGAAC 59.709 45.455 0.00 0.00 37.43 3.01
379 384 1.238439 ATGACCAACTGCAAGAACCG 58.762 50.000 0.00 0.00 37.43 4.44
380 385 0.107410 TGACCAACTGCAAGAACCGT 60.107 50.000 0.00 0.00 37.43 4.83
501 1771 6.677913 ACTTTGCATGCTTAACGTAATTTCT 58.322 32.000 20.33 0.00 0.00 2.52
502 1772 6.801862 ACTTTGCATGCTTAACGTAATTTCTC 59.198 34.615 20.33 0.00 0.00 2.87
507 1777 7.649705 TGCATGCTTAACGTAATTTCTCAAAAA 59.350 29.630 20.33 0.00 0.00 1.94
559 1829 3.739519 GCAGGTAAGATCAGCTAGGTGTG 60.740 52.174 20.76 10.56 0.00 3.82
584 1854 0.250901 AATGTCATATCAGCCGGGCC 60.251 55.000 17.02 0.00 0.00 5.80
652 1922 3.551846 AGCCGAGAAGAAAGAAAACCAA 58.448 40.909 0.00 0.00 0.00 3.67
703 1973 2.126071 CTGCTGCCATGCACAAGC 60.126 61.111 0.00 0.00 38.12 4.01
722 1992 1.210722 GCGAAGGGAAGGGAAGAGAAT 59.789 52.381 0.00 0.00 0.00 2.40
914 2186 4.103785 AGCTAGCAATCTCTCTCTCTCTCT 59.896 45.833 18.83 0.00 0.00 3.10
915 2187 4.453819 GCTAGCAATCTCTCTCTCTCTCTC 59.546 50.000 10.63 0.00 0.00 3.20
916 2188 4.785346 AGCAATCTCTCTCTCTCTCTCT 57.215 45.455 0.00 0.00 0.00 3.10
917 2189 4.712476 AGCAATCTCTCTCTCTCTCTCTC 58.288 47.826 0.00 0.00 0.00 3.20
918 2190 4.411540 AGCAATCTCTCTCTCTCTCTCTCT 59.588 45.833 0.00 0.00 0.00 3.10
919 2191 4.754114 GCAATCTCTCTCTCTCTCTCTCTC 59.246 50.000 0.00 0.00 0.00 3.20
920 2192 5.454471 GCAATCTCTCTCTCTCTCTCTCTCT 60.454 48.000 0.00 0.00 0.00 3.10
921 2193 6.222389 CAATCTCTCTCTCTCTCTCTCTCTC 58.778 48.000 0.00 0.00 0.00 3.20
929 2201 2.711009 TCTCTCTCTCTCTCATCCTCCC 59.289 54.545 0.00 0.00 0.00 4.30
976 2248 2.231529 GCTAGCTCCTCGATCAAGGTA 58.768 52.381 7.70 0.00 37.69 3.08
1020 2292 3.402681 CGCATGGAGGGTGGAGGT 61.403 66.667 0.00 0.00 0.00 3.85
1308 2580 1.014044 GCGATCCTGTTGCGAGTTCA 61.014 55.000 0.00 0.00 0.00 3.18
1311 2583 1.728971 GATCCTGTTGCGAGTTCACTG 59.271 52.381 0.00 0.00 0.00 3.66
1352 2624 5.491982 AGTGGGTCTTGATTAAAGCTACAG 58.508 41.667 0.00 0.00 35.69 2.74
1520 2808 3.500448 TGAGCCTGTGGTGACAAATTA 57.500 42.857 0.00 0.00 46.06 1.40
1696 2984 2.503356 TGAGCCATCTTTCCTTCTCTCC 59.497 50.000 0.00 0.00 0.00 3.71
1711 2999 0.322816 TCTCCCATGTGCCTTCTTGC 60.323 55.000 0.00 0.00 0.00 4.01
1737 3025 1.901591 CCTCTGTGGTTCACATGCTT 58.098 50.000 0.98 0.00 43.71 3.91
1741 3029 5.185454 CCTCTGTGGTTCACATGCTTATAA 58.815 41.667 0.98 0.00 43.71 0.98
1742 3030 5.824624 CCTCTGTGGTTCACATGCTTATAAT 59.175 40.000 0.98 0.00 43.71 1.28
1882 3170 8.812147 TCGCCTGTCATTATTTAGTTACTATG 57.188 34.615 0.00 0.00 0.00 2.23
1904 3192 3.303990 GCAGACGACATGTGTGACAAAAT 60.304 43.478 1.15 0.00 44.34 1.82
1988 3276 5.052481 ACATGATGTGTGATTATCTCCACG 58.948 41.667 0.00 0.00 40.28 4.94
2049 3337 8.586879 TTTGGTGGTATGATCATGACAAAATA 57.413 30.769 18.72 0.00 0.00 1.40
2113 3401 1.614317 CCAAGGCGGGAGAACTTCAAT 60.614 52.381 0.00 0.00 0.00 2.57
2571 3859 2.748605 CATCCTCGGTGAGATTGCTAC 58.251 52.381 0.00 0.00 0.00 3.58
2651 3939 3.641906 GGTATGGCCACTCACTACTACAT 59.358 47.826 8.16 0.00 37.17 2.29
2727 4015 1.421268 TCCTGCTCTCTTTTTGCCTCA 59.579 47.619 0.00 0.00 0.00 3.86
3232 4522 4.209538 TGGTAATCTTGCAGCATAGCATT 58.790 39.130 0.00 0.00 45.19 3.56
3507 4797 0.868406 CGCCTTTCAGCTTCGACTTT 59.132 50.000 0.00 0.00 0.00 2.66
3537 4827 7.664731 CAGCCATCATTTACTGAGGAAGATATT 59.335 37.037 0.00 0.00 37.89 1.28
3564 4854 0.914644 TCATTTGGAGGGAGGCTCTG 59.085 55.000 15.23 2.00 0.00 3.35
3580 4870 3.416156 GCTCTGAAGTTCAACCCTGAAT 58.584 45.455 7.06 0.00 43.39 2.57
3759 5051 5.296283 TGACGTCGAAAACCTGGAAATTTAA 59.704 36.000 11.62 0.00 0.00 1.52
3763 5055 6.358822 CGTCGAAAACCTGGAAATTTAAGAAC 59.641 38.462 0.00 0.00 0.00 3.01
3770 5062 7.797121 ACCTGGAAATTTAAGAACCATGAAT 57.203 32.000 0.00 0.00 0.00 2.57
3912 5204 2.047213 TTTCCGGCCACTCTTCCGTT 62.047 55.000 2.24 0.00 43.87 4.44
4067 5359 8.031277 AGTTTGACCAAGAGATTGATAATTTGC 58.969 33.333 0.00 0.00 0.00 3.68
4251 5543 2.711009 AGGATCACACCCAAAGTTCTCA 59.289 45.455 0.00 0.00 0.00 3.27
4285 5577 5.500234 TGAAAATAGAATGAGACCCCACAG 58.500 41.667 0.00 0.00 0.00 3.66
4395 5992 8.134895 ACAATTTACTAAACAATCGCCATATGG 58.865 33.333 18.07 18.07 38.53 2.74
4515 6112 6.865834 TTAATAATGCCCAAGGTCACAATT 57.134 33.333 0.00 0.00 0.00 2.32
4532 6129 2.401583 ATTGTGTTCGGCAGCTCATA 57.598 45.000 0.00 0.00 0.00 2.15
4533 6130 2.401583 TTGTGTTCGGCAGCTCATAT 57.598 45.000 0.00 0.00 0.00 1.78
4535 6132 0.305922 GTGTTCGGCAGCTCATATGC 59.694 55.000 0.00 0.00 43.09 3.14
4542 6139 0.036577 GCAGCTCATATGCCCGAGAT 60.037 55.000 0.00 0.00 37.73 2.75
4553 6150 1.073125 TGCCCGAGATAGAGAGAGAGG 59.927 57.143 0.00 0.00 0.00 3.69
4562 6159 5.476983 AGATAGAGAGAGAGGGAGAGAGAA 58.523 45.833 0.00 0.00 0.00 2.87
4563 6160 3.933861 AGAGAGAGAGGGAGAGAGAAC 57.066 52.381 0.00 0.00 0.00 3.01
4564 6161 3.189606 AGAGAGAGAGGGAGAGAGAACA 58.810 50.000 0.00 0.00 0.00 3.18
4565 6162 3.054361 AGAGAGAGAGGGAGAGAGAACAC 60.054 52.174 0.00 0.00 0.00 3.32
4566 6163 2.647299 AGAGAGAGGGAGAGAGAACACA 59.353 50.000 0.00 0.00 0.00 3.72
4567 6164 3.269381 AGAGAGAGGGAGAGAGAACACAT 59.731 47.826 0.00 0.00 0.00 3.21
4568 6165 4.476846 AGAGAGAGGGAGAGAGAACACATA 59.523 45.833 0.00 0.00 0.00 2.29
4569 6166 4.792068 AGAGAGGGAGAGAGAACACATAG 58.208 47.826 0.00 0.00 0.00 2.23
4570 6167 3.295973 AGAGGGAGAGAGAACACATAGC 58.704 50.000 0.00 0.00 0.00 2.97
4571 6168 3.052944 AGAGGGAGAGAGAACACATAGCT 60.053 47.826 0.00 0.00 0.00 3.32
4572 6169 4.167113 AGAGGGAGAGAGAACACATAGCTA 59.833 45.833 0.00 0.00 0.00 3.32
4573 6170 4.211920 AGGGAGAGAGAACACATAGCTAC 58.788 47.826 0.00 0.00 0.00 3.58
4574 6171 4.079443 AGGGAGAGAGAACACATAGCTACT 60.079 45.833 0.00 0.00 0.00 2.57
4575 6172 5.132985 AGGGAGAGAGAACACATAGCTACTA 59.867 44.000 0.00 0.00 0.00 1.82
4576 6173 5.828859 GGGAGAGAGAACACATAGCTACTAA 59.171 44.000 0.00 0.00 0.00 2.24
4577 6174 6.238814 GGGAGAGAGAACACATAGCTACTAAC 60.239 46.154 0.00 0.00 0.00 2.34
4578 6175 6.319152 GGAGAGAGAACACATAGCTACTAACA 59.681 42.308 0.00 0.00 0.00 2.41
4579 6176 7.148052 GGAGAGAGAACACATAGCTACTAACAA 60.148 40.741 0.00 0.00 0.00 2.83
4580 6177 8.123639 AGAGAGAACACATAGCTACTAACAAA 57.876 34.615 0.00 0.00 0.00 2.83
4581 6178 8.754080 AGAGAGAACACATAGCTACTAACAAAT 58.246 33.333 0.00 0.00 0.00 2.32
4582 6179 8.934507 AGAGAACACATAGCTACTAACAAATC 57.065 34.615 0.00 0.00 0.00 2.17
4583 6180 8.754080 AGAGAACACATAGCTACTAACAAATCT 58.246 33.333 0.00 0.00 0.00 2.40
4584 6181 9.372369 GAGAACACATAGCTACTAACAAATCTT 57.628 33.333 0.00 0.00 0.00 2.40
4587 6184 8.649973 ACACATAGCTACTAACAAATCTTAGC 57.350 34.615 0.00 0.00 36.25 3.09
4588 6185 7.711339 ACACATAGCTACTAACAAATCTTAGCC 59.289 37.037 0.00 0.00 36.60 3.93
4589 6186 7.171678 CACATAGCTACTAACAAATCTTAGCCC 59.828 40.741 0.00 0.00 36.60 5.19
4590 6187 5.037383 AGCTACTAACAAATCTTAGCCCC 57.963 43.478 0.00 0.00 36.60 5.80
4591 6188 4.473559 AGCTACTAACAAATCTTAGCCCCA 59.526 41.667 0.00 0.00 36.60 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.623081 TTTGTCGTCGCTGATTCGCC 61.623 55.000 0.00 0.00 0.00 5.54
25 26 2.892373 TGGCGATTGAATTTGTCGTC 57.108 45.000 5.94 5.94 40.14 4.20
29 30 7.818930 AGTCAAATAATTGGCGATTGAATTTGT 59.181 29.630 22.97 11.25 45.88 2.83
31 32 7.220683 CGAGTCAAATAATTGGCGATTGAATTT 59.779 33.333 10.31 6.34 45.88 1.82
37 38 3.243068 GGCGAGTCAAATAATTGGCGATT 60.243 43.478 5.12 5.12 45.88 3.34
40 41 1.670811 AGGCGAGTCAAATAATTGGCG 59.329 47.619 0.00 0.00 45.88 5.69
61 62 2.569354 GGCCAACCACGCCAAATCA 61.569 57.895 0.00 0.00 46.27 2.57
106 107 2.597455 CACCTTGATTGTGGAGGGTTT 58.403 47.619 0.00 0.00 34.81 3.27
114 115 1.955778 TGCTCAACCACCTTGATTGTG 59.044 47.619 0.00 0.00 38.26 3.33
120 121 1.608055 TCATGTGCTCAACCACCTTG 58.392 50.000 0.00 0.00 34.85 3.61
149 150 1.562672 AAGGGTGTATCGCCTGCCTT 61.563 55.000 0.00 0.00 33.98 4.35
156 157 1.404391 TCGAGAAGAAGGGTGTATCGC 59.596 52.381 0.00 0.00 0.00 4.58
168 173 9.931210 GAATTTTTGTTAACTCTTTCGAGAAGA 57.069 29.630 7.22 8.92 39.74 2.87
205 210 5.635280 CCGACTATGAAATCTGAATACGCAT 59.365 40.000 0.00 0.00 0.00 4.73
206 211 4.982295 CCGACTATGAAATCTGAATACGCA 59.018 41.667 0.00 0.00 0.00 5.24
209 214 9.261180 TGAAATCCGACTATGAAATCTGAATAC 57.739 33.333 0.00 0.00 0.00 1.89
238 243 2.382746 CGACACATGGCCACTCACG 61.383 63.158 8.16 7.22 0.00 4.35
323 328 6.506200 CGCCATGTAAAATTTGAATGTAAGCG 60.506 38.462 0.00 4.13 0.00 4.68
329 334 6.035542 GGTTACCGCCATGTAAAATTTGAATG 59.964 38.462 0.00 0.00 32.81 2.67
340 345 0.607112 TCGTTGGTTACCGCCATGTA 59.393 50.000 0.00 0.00 38.48 2.29
377 382 6.385843 TGATTACAACATTTTGGATTCACGG 58.614 36.000 0.00 0.00 33.04 4.94
465 500 5.427378 AGCATGCAAAGTTAGGTTGTTTTT 58.573 33.333 21.98 0.00 0.00 1.94
470 505 4.616802 CGTTAAGCATGCAAAGTTAGGTTG 59.383 41.667 21.98 0.00 0.00 3.77
471 506 4.277423 ACGTTAAGCATGCAAAGTTAGGTT 59.723 37.500 21.98 4.30 0.00 3.50
473 508 4.419522 ACGTTAAGCATGCAAAGTTAGG 57.580 40.909 21.98 7.97 0.00 2.69
514 1784 4.625324 CGGAACCTAGTCCATGGAATTCAA 60.625 45.833 21.50 0.93 37.56 2.69
584 1854 9.736023 ATTTCTTTTGTTGTAGTAGCTCTTTTG 57.264 29.630 0.00 0.00 0.00 2.44
652 1922 6.628398 GCTCCTTTCTTGCATACAGTACTACT 60.628 42.308 0.00 0.00 0.00 2.57
703 1973 3.055094 TCAATTCTCTTCCCTTCCCTTCG 60.055 47.826 0.00 0.00 0.00 3.79
722 1992 1.500783 CCCTCCCCTTGAGCCTTCAA 61.501 60.000 0.00 0.00 40.92 2.69
914 2186 1.152652 GCGGGGAGGATGAGAGAGA 60.153 63.158 0.00 0.00 0.00 3.10
915 2187 2.560119 CGCGGGGAGGATGAGAGAG 61.560 68.421 0.00 0.00 0.00 3.20
916 2188 2.519541 CGCGGGGAGGATGAGAGA 60.520 66.667 0.00 0.00 0.00 3.10
917 2189 3.610669 CCGCGGGGAGGATGAGAG 61.611 72.222 20.10 0.00 34.06 3.20
1285 2557 0.729116 CTCGCAACAGGATCGCAATT 59.271 50.000 0.00 0.00 0.00 2.32
1287 2559 0.602638 AACTCGCAACAGGATCGCAA 60.603 50.000 0.00 0.00 0.00 4.85
1308 2580 6.266323 CACTTTCAGTCGTATATGCTACAGT 58.734 40.000 0.00 0.00 0.00 3.55
1311 2583 4.982916 CCCACTTTCAGTCGTATATGCTAC 59.017 45.833 0.00 0.00 0.00 3.58
1352 2624 8.393671 ACTATATACGCTAGGCTATGGTAATC 57.606 38.462 8.36 0.00 0.00 1.75
1491 2779 2.361757 CACCACAGGCTCAAAATCAACA 59.638 45.455 0.00 0.00 0.00 3.33
1520 2808 7.308469 GCACTGAAGAAGAAGATCACAGAAAAT 60.308 37.037 0.00 0.00 33.45 1.82
1882 3170 1.217001 TTGTCACACATGTCGTCTGC 58.783 50.000 0.00 0.00 0.00 4.26
1904 3192 2.441750 AGCACAGGTAGGGAACTTCAAA 59.558 45.455 0.00 0.00 43.67 2.69
2049 3337 3.896888 TGAAATCACCTGCCAAAAGTCAT 59.103 39.130 0.00 0.00 0.00 3.06
2571 3859 1.376037 GGAAACAGTGGCTCCCTCG 60.376 63.158 0.00 0.00 0.00 4.63
2813 4103 5.126779 TGTGGTGTACTTGTGCTAATTGAA 58.873 37.500 0.00 0.00 0.00 2.69
3507 4797 3.538591 CTCAGTAAATGATGGCTGCTCA 58.461 45.455 0.00 0.00 37.28 4.26
3537 4827 4.567747 GCCTCCCTCCAAATGAGTTCTTTA 60.568 45.833 0.00 0.00 39.65 1.85
3564 4854 6.015940 AGTGAATTGATTCAGGGTTGAACTTC 60.016 38.462 6.66 0.00 46.44 3.01
3580 4870 6.098124 ACATTGGGAACTTTTCAGTGAATTGA 59.902 34.615 6.36 0.00 31.60 2.57
3759 5051 7.649533 TTATTGATCAAGCATTCATGGTTCT 57.350 32.000 14.54 0.00 45.69 3.01
3763 5055 8.657074 ACAAATTATTGATCAAGCATTCATGG 57.343 30.769 14.54 7.63 38.94 3.66
3770 5062 7.167924 TGGCTAACAAATTATTGATCAAGCA 57.832 32.000 14.54 3.04 38.94 3.91
4271 5563 0.033796 CATGCCTGTGGGGTCTCATT 60.034 55.000 0.00 0.00 37.43 2.57
4285 5577 2.427095 GGGTGTGATTCTTTACCATGCC 59.573 50.000 0.00 0.00 34.89 4.40
4395 5992 6.566197 ATTGAACTTTGAGAACCATGAGAC 57.434 37.500 0.00 0.00 0.00 3.36
4515 6112 1.655484 CATATGAGCTGCCGAACACA 58.345 50.000 0.00 0.00 0.00 3.72
4532 6129 2.290896 CCTCTCTCTCTATCTCGGGCAT 60.291 54.545 0.00 0.00 0.00 4.40
4533 6130 1.073125 CCTCTCTCTCTATCTCGGGCA 59.927 57.143 0.00 0.00 0.00 5.36
4535 6132 1.982226 TCCCTCTCTCTCTATCTCGGG 59.018 57.143 0.00 0.00 0.00 5.14
4536 6133 2.903784 TCTCCCTCTCTCTCTATCTCGG 59.096 54.545 0.00 0.00 0.00 4.63
4537 6134 3.832490 TCTCTCCCTCTCTCTCTATCTCG 59.168 52.174 0.00 0.00 0.00 4.04
4542 6139 4.163458 GTGTTCTCTCTCCCTCTCTCTCTA 59.837 50.000 0.00 0.00 0.00 2.43
4553 6150 6.319152 TGTTAGTAGCTATGTGTTCTCTCTCC 59.681 42.308 0.00 0.00 0.00 3.71
4562 6159 7.711339 GGCTAAGATTTGTTAGTAGCTATGTGT 59.289 37.037 0.00 0.00 37.81 3.72
4563 6160 7.171678 GGGCTAAGATTTGTTAGTAGCTATGTG 59.828 40.741 0.00 0.00 37.81 3.21
4564 6161 7.217906 GGGCTAAGATTTGTTAGTAGCTATGT 58.782 38.462 0.00 0.00 37.81 2.29
4565 6162 6.651225 GGGGCTAAGATTTGTTAGTAGCTATG 59.349 42.308 0.00 0.00 37.81 2.23
4566 6163 6.329197 TGGGGCTAAGATTTGTTAGTAGCTAT 59.671 38.462 0.00 0.00 37.81 2.97
4567 6164 5.664006 TGGGGCTAAGATTTGTTAGTAGCTA 59.336 40.000 0.00 0.00 37.81 3.32
4568 6165 4.473559 TGGGGCTAAGATTTGTTAGTAGCT 59.526 41.667 0.00 0.00 37.81 3.32
4569 6166 4.777463 TGGGGCTAAGATTTGTTAGTAGC 58.223 43.478 0.00 0.00 37.13 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.