Multiple sequence alignment - TraesCS7D01G295300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G295300 chr7D 100.000 5438 0 0 1 5438 370175186 370180623 0.000000e+00 10043.0
1 TraesCS7D01G295300 chr7A 93.855 3271 143 19 357 3613 409881175 409877949 0.000000e+00 4874.0
2 TraesCS7D01G295300 chr7A 95.580 1810 60 15 3642 5438 409877952 409876150 0.000000e+00 2881.0
3 TraesCS7D01G295300 chr7A 82.129 263 36 9 609 867 515033124 515032869 1.190000e-51 215.0
4 TraesCS7D01G295300 chr7A 94.737 57 3 0 275 331 409881233 409881177 7.500000e-14 89.8
5 TraesCS7D01G295300 chr7B 96.187 2649 79 8 2051 4683 317228015 317230657 0.000000e+00 4313.0
6 TraesCS7D01G295300 chr7B 97.259 1204 27 4 833 2036 317226830 317228027 0.000000e+00 2036.0
7 TraesCS7D01G295300 chr7B 96.535 606 21 0 4833 5438 317230789 317231394 0.000000e+00 1003.0
8 TraesCS7D01G295300 chr7B 89.897 584 43 7 272 841 317223592 317224173 0.000000e+00 737.0
9 TraesCS7D01G295300 chr7B 97.458 118 3 0 4669 4786 317230676 317230793 9.240000e-48 202.0
10 TraesCS7D01G295300 chr5D 94.815 270 12 2 1 269 190152436 190152704 2.340000e-113 420.0
11 TraesCS7D01G295300 chr5D 93.309 269 17 1 1 268 68499019 68498751 3.950000e-106 396.0
12 TraesCS7D01G295300 chr1D 94.052 269 15 1 1 268 113631612 113631880 1.820000e-109 407.0
13 TraesCS7D01G295300 chr1D 93.309 269 17 1 1 268 235561863 235562131 3.950000e-106 396.0
14 TraesCS7D01G295300 chr6D 92.701 274 19 1 1 273 104869103 104868830 1.420000e-105 394.0
15 TraesCS7D01G295300 chr2D 93.585 265 16 1 1 264 107691762 107692026 1.420000e-105 394.0
16 TraesCS7D01G295300 chr2D 93.585 265 16 1 1 264 318467257 318467521 1.420000e-105 394.0
17 TraesCS7D01G295300 chr2D 92.989 271 18 1 1 270 330136939 330136669 1.420000e-105 394.0
18 TraesCS7D01G295300 chr4D 92.308 273 19 2 1 271 409182464 409182192 2.380000e-103 387.0
19 TraesCS7D01G295300 chr2A 95.946 74 3 0 3852 3925 135275642 135275569 2.660000e-23 121.0
20 TraesCS7D01G295300 chr6A 80.124 161 27 4 303 459 3771366 3771525 1.240000e-21 115.0
21 TraesCS7D01G295300 chr1A 93.443 61 4 0 3852 3912 558021238 558021178 2.090000e-14 91.6
22 TraesCS7D01G295300 chr2B 76.415 106 21 4 304 407 763470611 763470508 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G295300 chr7D 370175186 370180623 5437 False 10043.000000 10043 100.0000 1 5438 1 chr7D.!!$F1 5437
1 TraesCS7D01G295300 chr7A 409876150 409881233 5083 True 2614.933333 4874 94.7240 275 5438 3 chr7A.!!$R2 5163
2 TraesCS7D01G295300 chr7B 317223592 317231394 7802 False 1658.200000 4313 95.4672 272 5438 5 chr7B.!!$F1 5166

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 262 0.027979 TGTATAGCACCGACGCGTAC 59.972 55.0 13.97 3.47 36.85 3.67 F
2043 4727 0.041238 ATGTTCTCCTCCTCGGGTCA 59.959 55.0 0.00 0.00 0.00 4.02 F
2044 4728 0.178944 TGTTCTCCTCCTCGGGTCAA 60.179 55.0 0.00 0.00 0.00 3.18 F
3382 6080 0.250467 GTGCTTCTGACAAGGCAGGA 60.250 55.0 2.58 0.00 36.55 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2060 4744 0.404040 ACGGGATTTGCCTCTTTGGA 59.596 50.0 0.00 0.0 38.35 3.53 R
3529 6227 1.497309 TTACCTGGCCCCCTGTCAAG 61.497 60.0 0.00 0.0 0.00 3.02 R
3536 6234 1.923006 GAAGAGGTTACCTGGCCCCC 61.923 65.0 9.39 0.0 31.76 5.40 R
5143 7887 0.383949 CGAGCAGCCCTTCTAGACTC 59.616 60.0 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.657075 AAACGGTTCATTACGACACATC 57.343 40.909 0.00 0.00 0.00 3.06
33 34 3.634730 CGACACATCGTATGGTTTCAC 57.365 47.619 0.00 0.00 43.66 3.18
34 35 3.250744 CGACACATCGTATGGTTTCACT 58.749 45.455 0.00 0.00 43.66 3.41
35 36 3.060761 CGACACATCGTATGGTTTCACTG 59.939 47.826 0.00 0.00 43.66 3.66
36 37 2.742053 ACACATCGTATGGTTTCACTGC 59.258 45.455 0.00 0.00 33.60 4.40
37 38 1.999735 ACATCGTATGGTTTCACTGCG 59.000 47.619 0.00 0.00 33.60 5.18
38 39 1.999735 CATCGTATGGTTTCACTGCGT 59.000 47.619 0.00 0.00 0.00 5.24
39 40 1.705256 TCGTATGGTTTCACTGCGTC 58.295 50.000 0.00 0.00 0.00 5.19
40 41 1.000052 TCGTATGGTTTCACTGCGTCA 60.000 47.619 0.00 0.00 0.00 4.35
41 42 1.999735 CGTATGGTTTCACTGCGTCAT 59.000 47.619 0.00 0.00 0.00 3.06
42 43 2.415168 CGTATGGTTTCACTGCGTCATT 59.585 45.455 0.00 0.00 0.00 2.57
43 44 3.615056 CGTATGGTTTCACTGCGTCATTA 59.385 43.478 0.00 0.00 0.00 1.90
44 45 4.259810 CGTATGGTTTCACTGCGTCATTAG 60.260 45.833 0.00 0.00 0.00 1.73
45 46 3.394674 TGGTTTCACTGCGTCATTAGA 57.605 42.857 0.00 0.00 0.00 2.10
46 47 3.734463 TGGTTTCACTGCGTCATTAGAA 58.266 40.909 0.00 0.00 0.00 2.10
47 48 4.130857 TGGTTTCACTGCGTCATTAGAAA 58.869 39.130 0.00 0.00 0.00 2.52
48 49 4.024387 TGGTTTCACTGCGTCATTAGAAAC 60.024 41.667 0.00 0.00 42.27 2.78
49 50 4.141680 GTTTCACTGCGTCATTAGAAACG 58.858 43.478 0.00 0.00 41.68 3.60
50 51 3.021269 TCACTGCGTCATTAGAAACGT 57.979 42.857 0.00 0.00 40.87 3.99
51 52 3.386486 TCACTGCGTCATTAGAAACGTT 58.614 40.909 0.00 0.00 40.87 3.99
52 53 3.805422 TCACTGCGTCATTAGAAACGTTT 59.195 39.130 14.57 14.57 40.87 3.60
53 54 4.983538 TCACTGCGTCATTAGAAACGTTTA 59.016 37.500 14.65 0.00 40.87 2.01
54 55 5.462729 TCACTGCGTCATTAGAAACGTTTAA 59.537 36.000 14.65 6.08 40.87 1.52
55 56 6.146510 TCACTGCGTCATTAGAAACGTTTAAT 59.853 34.615 14.65 8.35 40.87 1.40
56 57 6.461698 CACTGCGTCATTAGAAACGTTTAATC 59.538 38.462 14.65 1.41 40.87 1.75
57 58 6.146510 ACTGCGTCATTAGAAACGTTTAATCA 59.853 34.615 14.65 4.82 40.87 2.57
58 59 6.301108 TGCGTCATTAGAAACGTTTAATCAC 58.699 36.000 14.65 6.98 40.87 3.06
59 60 5.731263 GCGTCATTAGAAACGTTTAATCACC 59.269 40.000 14.65 0.00 40.87 4.02
60 61 5.949787 CGTCATTAGAAACGTTTAATCACCG 59.050 40.000 14.65 7.62 34.30 4.94
61 62 6.183360 CGTCATTAGAAACGTTTAATCACCGA 60.183 38.462 14.65 2.38 34.30 4.69
62 63 7.463648 CGTCATTAGAAACGTTTAATCACCGAT 60.464 37.037 14.65 0.00 34.30 4.18
63 64 7.844653 GTCATTAGAAACGTTTAATCACCGATC 59.155 37.037 14.65 0.00 0.00 3.69
64 65 6.651755 TTAGAAACGTTTAATCACCGATCC 57.348 37.500 14.65 0.00 0.00 3.36
65 66 3.937079 AGAAACGTTTAATCACCGATCCC 59.063 43.478 14.65 0.00 0.00 3.85
66 67 3.337694 AACGTTTAATCACCGATCCCA 57.662 42.857 0.00 0.00 0.00 4.37
67 68 2.624636 ACGTTTAATCACCGATCCCAC 58.375 47.619 0.00 0.00 0.00 4.61
68 69 2.027929 ACGTTTAATCACCGATCCCACA 60.028 45.455 0.00 0.00 0.00 4.17
69 70 2.350498 CGTTTAATCACCGATCCCACAC 59.650 50.000 0.00 0.00 0.00 3.82
70 71 2.303163 TTAATCACCGATCCCACACG 57.697 50.000 0.00 0.00 0.00 4.49
71 72 1.187974 TAATCACCGATCCCACACGT 58.812 50.000 0.00 0.00 0.00 4.49
72 73 0.391130 AATCACCGATCCCACACGTG 60.391 55.000 15.48 15.48 0.00 4.49
73 74 1.541310 ATCACCGATCCCACACGTGT 61.541 55.000 17.22 17.22 0.00 4.49
74 75 2.027073 CACCGATCCCACACGTGTG 61.027 63.158 36.13 36.13 45.23 3.82
89 90 5.806286 ACACGTGTGAAAGAATTTAGTGTG 58.194 37.500 22.71 0.00 39.27 3.82
90 91 5.353123 ACACGTGTGAAAGAATTTAGTGTGT 59.647 36.000 22.71 0.00 39.27 3.72
91 92 5.676744 CACGTGTGAAAGAATTTAGTGTGTG 59.323 40.000 7.58 0.00 39.27 3.82
92 93 5.353123 ACGTGTGAAAGAATTTAGTGTGTGT 59.647 36.000 0.00 0.00 39.27 3.72
93 94 6.128117 ACGTGTGAAAGAATTTAGTGTGTGTT 60.128 34.615 0.00 0.00 39.27 3.32
94 95 6.194508 CGTGTGAAAGAATTTAGTGTGTGTTG 59.805 38.462 0.00 0.00 39.27 3.33
95 96 6.020678 GTGTGAAAGAATTTAGTGTGTGTTGC 60.021 38.462 0.00 0.00 39.27 4.17
96 97 6.033341 GTGAAAGAATTTAGTGTGTGTTGCA 58.967 36.000 0.00 0.00 39.27 4.08
97 98 6.697019 GTGAAAGAATTTAGTGTGTGTTGCAT 59.303 34.615 0.00 0.00 39.27 3.96
98 99 7.222611 GTGAAAGAATTTAGTGTGTGTTGCATT 59.777 33.333 0.00 0.00 39.27 3.56
99 100 7.222417 TGAAAGAATTTAGTGTGTGTTGCATTG 59.778 33.333 0.00 0.00 39.27 2.82
100 101 4.984161 AGAATTTAGTGTGTGTTGCATTGC 59.016 37.500 0.46 0.46 0.00 3.56
101 102 3.790152 TTTAGTGTGTGTTGCATTGCA 57.210 38.095 7.38 7.38 36.47 4.08
102 103 2.772568 TAGTGTGTGTTGCATTGCAC 57.227 45.000 11.66 7.49 38.71 4.57
103 104 0.816373 AGTGTGTGTTGCATTGCACA 59.184 45.000 11.66 10.05 42.50 4.57
105 106 4.705996 TGTGTTGCATTGCACACG 57.294 50.000 25.26 0.00 40.55 4.49
106 107 2.101700 TGTGTTGCATTGCACACGA 58.898 47.368 25.26 17.43 40.55 4.35
107 108 0.667453 TGTGTTGCATTGCACACGAT 59.333 45.000 25.26 0.00 40.55 3.73
108 109 1.066757 TGTGTTGCATTGCACACGATT 59.933 42.857 25.26 0.00 40.55 3.34
109 110 2.291741 TGTGTTGCATTGCACACGATTA 59.708 40.909 25.26 14.00 40.55 1.75
110 111 2.656422 GTGTTGCATTGCACACGATTAC 59.344 45.455 20.54 12.34 38.71 1.89
111 112 2.291741 TGTTGCATTGCACACGATTACA 59.708 40.909 11.66 8.37 38.71 2.41
112 113 3.057666 TGTTGCATTGCACACGATTACAT 60.058 39.130 11.66 0.00 38.71 2.29
113 114 3.846423 TGCATTGCACACGATTACATT 57.154 38.095 7.38 0.00 31.71 2.71
114 115 4.171663 TGCATTGCACACGATTACATTT 57.828 36.364 7.38 0.00 31.71 2.32
115 116 4.554292 TGCATTGCACACGATTACATTTT 58.446 34.783 7.38 0.00 31.71 1.82
116 117 4.385146 TGCATTGCACACGATTACATTTTG 59.615 37.500 7.38 0.00 31.71 2.44
117 118 4.201608 GCATTGCACACGATTACATTTTGG 60.202 41.667 3.15 0.00 0.00 3.28
118 119 4.837896 TTGCACACGATTACATTTTGGA 57.162 36.364 0.00 0.00 0.00 3.53
119 120 4.837896 TGCACACGATTACATTTTGGAA 57.162 36.364 0.00 0.00 0.00 3.53
120 121 4.793071 TGCACACGATTACATTTTGGAAG 58.207 39.130 0.00 0.00 0.00 3.46
121 122 4.165779 GCACACGATTACATTTTGGAAGG 58.834 43.478 0.00 0.00 0.00 3.46
122 123 4.165779 CACACGATTACATTTTGGAAGGC 58.834 43.478 0.00 0.00 0.00 4.35
123 124 3.192633 ACACGATTACATTTTGGAAGGCC 59.807 43.478 0.00 0.00 0.00 5.19
124 125 3.443681 CACGATTACATTTTGGAAGGCCT 59.556 43.478 0.00 0.00 34.31 5.19
125 126 3.694566 ACGATTACATTTTGGAAGGCCTC 59.305 43.478 5.23 0.00 34.31 4.70
126 127 3.947834 CGATTACATTTTGGAAGGCCTCT 59.052 43.478 5.23 0.00 34.31 3.69
127 128 4.201950 CGATTACATTTTGGAAGGCCTCTG 60.202 45.833 5.23 0.00 34.31 3.35
128 129 1.928868 ACATTTTGGAAGGCCTCTGG 58.071 50.000 5.23 0.00 34.31 3.86
129 130 1.428912 ACATTTTGGAAGGCCTCTGGA 59.571 47.619 5.23 0.00 34.31 3.86
130 131 2.043526 ACATTTTGGAAGGCCTCTGGAT 59.956 45.455 5.23 0.00 34.31 3.41
131 132 2.999185 TTTTGGAAGGCCTCTGGATT 57.001 45.000 5.23 0.00 34.31 3.01
132 133 4.264352 ACATTTTGGAAGGCCTCTGGATTA 60.264 41.667 5.23 0.00 34.31 1.75
133 134 4.608170 TTTTGGAAGGCCTCTGGATTAT 57.392 40.909 5.23 0.00 34.31 1.28
134 135 4.608170 TTTGGAAGGCCTCTGGATTATT 57.392 40.909 5.23 0.00 34.31 1.40
135 136 3.582998 TGGAAGGCCTCTGGATTATTG 57.417 47.619 5.23 0.00 34.31 1.90
136 137 2.234143 GGAAGGCCTCTGGATTATTGC 58.766 52.381 5.23 0.00 0.00 3.56
137 138 2.158549 GGAAGGCCTCTGGATTATTGCT 60.159 50.000 5.23 0.00 0.00 3.91
138 139 2.947127 AGGCCTCTGGATTATTGCTC 57.053 50.000 0.00 0.00 0.00 4.26
139 140 1.423161 AGGCCTCTGGATTATTGCTCC 59.577 52.381 0.00 0.00 0.00 4.70
140 141 1.143684 GGCCTCTGGATTATTGCTCCA 59.856 52.381 0.00 0.00 40.49 3.86
141 142 2.224967 GGCCTCTGGATTATTGCTCCAT 60.225 50.000 0.00 0.00 41.83 3.41
142 143 3.009473 GGCCTCTGGATTATTGCTCCATA 59.991 47.826 0.00 0.00 41.83 2.74
143 144 4.324874 GGCCTCTGGATTATTGCTCCATAT 60.325 45.833 0.00 0.00 41.83 1.78
144 145 4.880696 GCCTCTGGATTATTGCTCCATATC 59.119 45.833 0.00 0.00 41.83 1.63
145 146 5.435291 CCTCTGGATTATTGCTCCATATCC 58.565 45.833 0.00 0.00 41.83 2.59
146 147 5.435291 CTCTGGATTATTGCTCCATATCCC 58.565 45.833 0.00 0.00 41.83 3.85
147 148 4.228210 TCTGGATTATTGCTCCATATCCCC 59.772 45.833 0.00 0.00 41.83 4.81
148 149 3.054434 TGGATTATTGCTCCATATCCCCG 60.054 47.826 0.00 0.00 37.87 5.73
149 150 3.199946 GGATTATTGCTCCATATCCCCGA 59.800 47.826 0.00 0.00 32.72 5.14
150 151 3.695830 TTATTGCTCCATATCCCCGAC 57.304 47.619 0.00 0.00 0.00 4.79
151 152 0.321671 ATTGCTCCATATCCCCGACG 59.678 55.000 0.00 0.00 0.00 5.12
152 153 1.754380 TTGCTCCATATCCCCGACGG 61.754 60.000 6.99 6.99 0.00 4.79
153 154 2.207924 GCTCCATATCCCCGACGGT 61.208 63.158 13.94 0.00 0.00 4.83
154 155 1.755393 GCTCCATATCCCCGACGGTT 61.755 60.000 13.94 0.00 0.00 4.44
155 156 0.756903 CTCCATATCCCCGACGGTTT 59.243 55.000 13.94 0.00 0.00 3.27
156 157 0.754472 TCCATATCCCCGACGGTTTC 59.246 55.000 13.94 0.00 0.00 2.78
157 158 0.756903 CCATATCCCCGACGGTTTCT 59.243 55.000 13.94 0.00 0.00 2.52
158 159 1.540363 CCATATCCCCGACGGTTTCTG 60.540 57.143 13.94 3.64 0.00 3.02
159 160 0.756903 ATATCCCCGACGGTTTCTGG 59.243 55.000 13.94 6.46 0.00 3.86
161 162 3.633116 CCCCGACGGTTTCTGGGT 61.633 66.667 13.94 0.00 42.63 4.51
162 163 2.047560 CCCGACGGTTTCTGGGTC 60.048 66.667 13.94 0.00 34.86 4.46
164 165 2.337532 CGACGGTTTCTGGGTCGT 59.662 61.111 4.78 0.00 46.07 4.34
165 166 2.019951 CGACGGTTTCTGGGTCGTG 61.020 63.158 4.78 0.00 46.07 4.35
166 167 1.068585 GACGGTTTCTGGGTCGTGT 59.931 57.895 0.00 0.00 35.91 4.49
167 168 1.219522 GACGGTTTCTGGGTCGTGTG 61.220 60.000 0.00 0.00 35.91 3.82
168 169 1.959226 CGGTTTCTGGGTCGTGTGG 60.959 63.158 0.00 0.00 0.00 4.17
169 170 1.599797 GGTTTCTGGGTCGTGTGGG 60.600 63.158 0.00 0.00 0.00 4.61
170 171 1.448497 GTTTCTGGGTCGTGTGGGA 59.552 57.895 0.00 0.00 0.00 4.37
171 172 0.179040 GTTTCTGGGTCGTGTGGGAA 60.179 55.000 0.00 0.00 0.00 3.97
172 173 0.107831 TTTCTGGGTCGTGTGGGAAG 59.892 55.000 0.00 0.00 0.00 3.46
173 174 1.764571 TTCTGGGTCGTGTGGGAAGG 61.765 60.000 0.00 0.00 0.00 3.46
174 175 2.122769 TGGGTCGTGTGGGAAGGA 60.123 61.111 0.00 0.00 0.00 3.36
175 176 2.346365 GGGTCGTGTGGGAAGGAC 59.654 66.667 0.00 0.00 34.86 3.85
176 177 2.513259 GGGTCGTGTGGGAAGGACA 61.513 63.158 0.00 0.00 36.82 4.02
177 178 1.301479 GGTCGTGTGGGAAGGACAC 60.301 63.158 0.00 0.00 40.34 3.67
178 179 1.301479 GTCGTGTGGGAAGGACACC 60.301 63.158 0.00 0.00 40.60 4.16
179 180 2.032071 CGTGTGGGAAGGACACCC 59.968 66.667 0.00 0.00 46.87 4.61
180 181 2.516888 CGTGTGGGAAGGACACCCT 61.517 63.158 0.00 0.00 46.82 4.34
181 182 1.189524 CGTGTGGGAAGGACACCCTA 61.190 60.000 0.00 0.00 46.82 3.53
182 183 1.286248 GTGTGGGAAGGACACCCTAT 58.714 55.000 0.00 0.00 46.82 2.57
183 184 1.209747 GTGTGGGAAGGACACCCTATC 59.790 57.143 0.00 0.00 46.82 2.08
184 185 0.464452 GTGGGAAGGACACCCTATCG 59.536 60.000 0.00 0.00 46.82 2.92
185 186 0.042131 TGGGAAGGACACCCTATCGT 59.958 55.000 0.00 0.00 46.82 3.73
186 187 0.751452 GGGAAGGACACCCTATCGTC 59.249 60.000 0.00 0.00 43.48 4.20
191 192 3.735181 GACACCCTATCGTCCACAC 57.265 57.895 0.00 0.00 0.00 3.82
192 193 1.183549 GACACCCTATCGTCCACACT 58.816 55.000 0.00 0.00 0.00 3.55
193 194 1.134560 GACACCCTATCGTCCACACTC 59.865 57.143 0.00 0.00 0.00 3.51
194 195 1.182667 CACCCTATCGTCCACACTCA 58.817 55.000 0.00 0.00 0.00 3.41
195 196 1.135083 CACCCTATCGTCCACACTCAC 60.135 57.143 0.00 0.00 0.00 3.51
196 197 1.272536 ACCCTATCGTCCACACTCACT 60.273 52.381 0.00 0.00 0.00 3.41
197 198 1.825474 CCCTATCGTCCACACTCACTT 59.175 52.381 0.00 0.00 0.00 3.16
198 199 2.417379 CCCTATCGTCCACACTCACTTG 60.417 54.545 0.00 0.00 0.00 3.16
199 200 2.492088 CCTATCGTCCACACTCACTTGA 59.508 50.000 0.00 0.00 0.00 3.02
200 201 2.440539 ATCGTCCACACTCACTTGAC 57.559 50.000 0.00 0.00 0.00 3.18
201 202 2.506544 CGTCCACACTCACTTGACG 58.493 57.895 0.00 0.00 42.13 4.35
202 203 3.959478 GTCCACACTCACTTGACGA 57.041 52.632 0.00 0.00 0.00 4.20
203 204 1.488527 GTCCACACTCACTTGACGAC 58.511 55.000 0.00 0.00 0.00 4.34
204 205 0.030235 TCCACACTCACTTGACGACG 59.970 55.000 0.00 0.00 0.00 5.12
205 206 0.939577 CCACACTCACTTGACGACGG 60.940 60.000 0.00 0.00 0.00 4.79
206 207 0.248907 CACACTCACTTGACGACGGT 60.249 55.000 0.00 0.00 0.00 4.83
207 208 0.030369 ACACTCACTTGACGACGGTC 59.970 55.000 0.00 0.00 43.71 4.79
208 209 0.663568 CACTCACTTGACGACGGTCC 60.664 60.000 1.91 0.00 42.73 4.46
209 210 1.080705 CTCACTTGACGACGGTCCC 60.081 63.158 1.91 0.00 42.73 4.46
210 211 1.802337 CTCACTTGACGACGGTCCCA 61.802 60.000 1.91 0.00 42.73 4.37
211 212 1.068417 CACTTGACGACGGTCCCAA 59.932 57.895 1.91 6.51 42.73 4.12
212 213 0.531090 CACTTGACGACGGTCCCAAA 60.531 55.000 1.91 0.00 42.73 3.28
213 214 0.395312 ACTTGACGACGGTCCCAAAT 59.605 50.000 1.91 0.00 42.73 2.32
214 215 0.796312 CTTGACGACGGTCCCAAATG 59.204 55.000 1.91 0.00 42.73 2.32
215 216 1.231958 TTGACGACGGTCCCAAATGC 61.232 55.000 1.91 0.00 42.73 3.56
216 217 2.359478 ACGACGGTCCCAAATGCC 60.359 61.111 1.91 0.00 0.00 4.40
217 218 2.359354 CGACGGTCCCAAATGCCA 60.359 61.111 1.91 0.00 0.00 4.92
218 219 1.748879 CGACGGTCCCAAATGCCAT 60.749 57.895 1.91 0.00 0.00 4.40
219 220 1.714899 CGACGGTCCCAAATGCCATC 61.715 60.000 1.91 0.00 0.00 3.51
220 221 1.714899 GACGGTCCCAAATGCCATCG 61.715 60.000 0.00 0.00 0.00 3.84
221 222 2.807622 GGTCCCAAATGCCATCGC 59.192 61.111 0.00 0.00 0.00 4.58
222 223 2.408835 GTCCCAAATGCCATCGCG 59.591 61.111 0.00 0.00 38.08 5.87
223 224 2.828095 TCCCAAATGCCATCGCGG 60.828 61.111 6.13 0.00 38.08 6.46
224 225 2.828095 CCCAAATGCCATCGCGGA 60.828 61.111 6.13 0.00 38.08 5.54
225 226 2.413963 CCCAAATGCCATCGCGGAA 61.414 57.895 6.13 0.00 38.08 4.30
226 227 1.510383 CCAAATGCCATCGCGGAAA 59.490 52.632 6.13 0.00 38.08 3.13
227 228 0.526096 CCAAATGCCATCGCGGAAAG 60.526 55.000 6.13 0.00 38.08 2.62
228 229 0.451383 CAAATGCCATCGCGGAAAGA 59.549 50.000 6.13 0.00 38.08 2.52
229 230 0.734889 AAATGCCATCGCGGAAAGAG 59.265 50.000 6.13 0.00 38.08 2.85
230 231 0.392998 AATGCCATCGCGGAAAGAGT 60.393 50.000 6.13 0.00 38.08 3.24
231 232 0.392998 ATGCCATCGCGGAAAGAGTT 60.393 50.000 6.13 0.00 38.08 3.01
232 233 0.248012 TGCCATCGCGGAAAGAGTTA 59.752 50.000 6.13 0.00 38.08 2.24
233 234 1.338294 TGCCATCGCGGAAAGAGTTAA 60.338 47.619 6.13 0.00 38.08 2.01
234 235 1.735571 GCCATCGCGGAAAGAGTTAAA 59.264 47.619 6.13 0.00 36.56 1.52
235 236 2.160813 GCCATCGCGGAAAGAGTTAAAA 59.839 45.455 6.13 0.00 36.56 1.52
236 237 3.365565 GCCATCGCGGAAAGAGTTAAAAA 60.366 43.478 6.13 0.00 36.56 1.94
237 238 4.156182 CCATCGCGGAAAGAGTTAAAAAC 58.844 43.478 6.13 0.00 36.56 2.43
238 239 4.083484 CCATCGCGGAAAGAGTTAAAAACT 60.083 41.667 6.13 0.00 40.49 2.66
239 240 4.461992 TCGCGGAAAGAGTTAAAAACTG 57.538 40.909 6.13 0.00 43.03 3.16
240 241 3.872771 TCGCGGAAAGAGTTAAAAACTGT 59.127 39.130 6.13 0.00 43.03 3.55
241 242 4.333372 TCGCGGAAAGAGTTAAAAACTGTT 59.667 37.500 6.13 0.00 45.72 3.16
251 252 9.946165 AAGAGTTAAAAACTGTTTGTATAGCAC 57.054 29.630 6.53 1.24 41.65 4.40
252 253 8.565416 AGAGTTAAAAACTGTTTGTATAGCACC 58.435 33.333 6.53 1.23 43.03 5.01
253 254 7.357303 AGTTAAAAACTGTTTGTATAGCACCG 58.643 34.615 6.53 0.00 41.01 4.94
254 255 7.227116 AGTTAAAAACTGTTTGTATAGCACCGA 59.773 33.333 6.53 0.00 41.01 4.69
255 256 5.352643 AAAACTGTTTGTATAGCACCGAC 57.647 39.130 6.53 0.00 0.00 4.79
256 257 2.602878 ACTGTTTGTATAGCACCGACG 58.397 47.619 0.00 0.00 0.00 5.12
257 258 1.323534 CTGTTTGTATAGCACCGACGC 59.676 52.381 0.00 0.00 0.00 5.19
258 259 0.296642 GTTTGTATAGCACCGACGCG 59.703 55.000 3.53 3.53 36.85 6.01
259 260 0.109179 TTTGTATAGCACCGACGCGT 60.109 50.000 13.85 13.85 36.85 6.01
260 261 0.731994 TTGTATAGCACCGACGCGTA 59.268 50.000 13.97 0.00 36.85 4.42
261 262 0.027979 TGTATAGCACCGACGCGTAC 59.972 55.000 13.97 3.47 36.85 3.67
262 263 0.658536 GTATAGCACCGACGCGTACC 60.659 60.000 13.97 0.00 36.85 3.34
263 264 1.094650 TATAGCACCGACGCGTACCA 61.095 55.000 13.97 0.00 36.85 3.25
264 265 1.936436 ATAGCACCGACGCGTACCAA 61.936 55.000 13.97 0.00 36.85 3.67
265 266 1.936436 TAGCACCGACGCGTACCAAT 61.936 55.000 13.97 0.00 36.85 3.16
266 267 3.077705 CACCGACGCGTACCAATG 58.922 61.111 13.97 2.57 0.00 2.82
267 268 1.444724 CACCGACGCGTACCAATGA 60.445 57.895 13.97 0.00 0.00 2.57
268 269 1.444895 ACCGACGCGTACCAATGAC 60.445 57.895 13.97 0.00 0.00 3.06
269 270 1.153901 CCGACGCGTACCAATGACT 60.154 57.895 13.97 0.00 0.00 3.41
270 271 0.099259 CCGACGCGTACCAATGACTA 59.901 55.000 13.97 0.00 0.00 2.59
292 293 3.467103 ACTCAATAATAATGGCCCCAGGT 59.533 43.478 0.00 0.00 0.00 4.00
355 356 3.361977 GGCACGCACCATTCGGTT 61.362 61.111 0.00 0.00 46.31 4.44
369 370 1.671979 TCGGTTAGATCGGACGACAT 58.328 50.000 0.00 0.00 0.00 3.06
480 484 4.697514 CATTAGGTACTCATGTGGTCCTG 58.302 47.826 17.33 4.58 41.75 3.86
481 485 2.623418 AGGTACTCATGTGGTCCTGA 57.377 50.000 10.66 0.00 0.00 3.86
667 683 2.024176 ATGAAATGACGTTCCGGGAG 57.976 50.000 0.00 0.00 0.00 4.30
952 3636 2.806244 CCGCTTCCTCAATTATTACGGG 59.194 50.000 0.00 0.00 34.63 5.28
1046 3730 2.586635 CGCCGCCGCCATTAACTA 60.587 61.111 0.00 0.00 0.00 2.24
1305 3989 5.349543 CAGCTTGGCAAAATATTTGACCTTC 59.650 40.000 16.62 8.65 0.00 3.46
1404 4088 2.099141 ATCCGGCATACATCATTCCG 57.901 50.000 0.00 0.00 42.40 4.30
1428 4112 5.420409 CCCTCTCAGTCACCACTAATTTAC 58.580 45.833 0.00 0.00 0.00 2.01
1478 4162 5.786311 TCGGGGCAACAATATATACTGTAC 58.214 41.667 0.00 0.00 39.74 2.90
1612 4296 1.811941 GCTAGCTCTGTGGGTTATGCC 60.812 57.143 7.70 0.00 0.00 4.40
1756 4440 1.228644 AGCAGTTTGCCTGGATGCA 60.229 52.632 0.00 0.00 46.52 3.96
1778 4462 2.866923 TCCCTCCTCACCATATGTCA 57.133 50.000 1.24 0.00 0.00 3.58
1995 4679 5.163513 CAGTTTACAATTCAATGGTCCTGC 58.836 41.667 0.00 0.00 0.00 4.85
1996 4680 5.047802 CAGTTTACAATTCAATGGTCCTGCT 60.048 40.000 0.00 0.00 0.00 4.24
2036 4720 2.840651 CAAGGTACCATGTTCTCCTCCT 59.159 50.000 15.94 0.00 0.00 3.69
2037 4721 2.753247 AGGTACCATGTTCTCCTCCTC 58.247 52.381 15.94 0.00 0.00 3.71
2038 4722 1.409427 GGTACCATGTTCTCCTCCTCG 59.591 57.143 7.15 0.00 0.00 4.63
2039 4723 1.409427 GTACCATGTTCTCCTCCTCGG 59.591 57.143 0.00 0.00 0.00 4.63
2040 4724 0.978146 ACCATGTTCTCCTCCTCGGG 60.978 60.000 0.00 0.00 0.00 5.14
2041 4725 0.978146 CCATGTTCTCCTCCTCGGGT 60.978 60.000 0.00 0.00 0.00 5.28
2042 4726 0.461961 CATGTTCTCCTCCTCGGGTC 59.538 60.000 0.00 0.00 0.00 4.46
2043 4727 0.041238 ATGTTCTCCTCCTCGGGTCA 59.959 55.000 0.00 0.00 0.00 4.02
2044 4728 0.178944 TGTTCTCCTCCTCGGGTCAA 60.179 55.000 0.00 0.00 0.00 3.18
2045 4729 0.974383 GTTCTCCTCCTCGGGTCAAA 59.026 55.000 0.00 0.00 0.00 2.69
2046 4730 1.346722 GTTCTCCTCCTCGGGTCAAAA 59.653 52.381 0.00 0.00 0.00 2.44
2047 4731 1.724545 TCTCCTCCTCGGGTCAAAAA 58.275 50.000 0.00 0.00 0.00 1.94
2115 4799 5.529060 GCCCTCTTCATATTCCAACTACTTG 59.471 44.000 0.00 0.00 0.00 3.16
2269 4953 7.769044 GCTACCCAGTCAACTAATCAAGAATTA 59.231 37.037 0.00 0.00 0.00 1.40
2281 4965 8.246871 ACTAATCAAGAATTAGAAGCTTTTGCC 58.753 33.333 0.00 0.00 46.73 4.52
2305 4989 4.323553 ACGACAGAAACAAAGCTCTAGT 57.676 40.909 0.00 0.00 0.00 2.57
2313 4997 5.921408 AGAAACAAAGCTCTAGTACTGTTCG 59.079 40.000 5.39 0.00 0.00 3.95
2384 5068 0.321564 CGACCACTGCAAATCCCAGA 60.322 55.000 0.00 0.00 34.47 3.86
2457 5141 2.905415 AATTCATGTGGGAAGGAGCA 57.095 45.000 0.00 0.00 0.00 4.26
2504 5188 5.855395 GCAAAATGTGAACTAGAGCAGAAAG 59.145 40.000 0.00 0.00 0.00 2.62
2553 5237 3.308323 GTGAAGCGATCTGGTCTGAATTC 59.692 47.826 0.00 0.00 0.00 2.17
2578 5262 1.664151 GCTCCGGATTTTGTACCTTCG 59.336 52.381 3.57 0.00 0.00 3.79
2597 5281 5.393027 CCTTCGTCGATTGGGAAATCAAAAT 60.393 40.000 0.00 0.00 0.00 1.82
2760 5444 1.860641 TATCGGGAGTTCTCAAGGCA 58.139 50.000 2.24 0.00 0.00 4.75
2811 5495 9.039870 CAGAGTAGTTATTCTGGTGATGAAATC 57.960 37.037 4.30 0.00 38.72 2.17
3018 5702 5.178067 GCAGTTTTACTTACGTCTTGCCTTA 59.822 40.000 0.00 0.00 0.00 2.69
3061 5757 1.123928 GAGCAGGTGTACCAGGCTAT 58.876 55.000 16.78 1.07 45.05 2.97
3143 5839 1.388547 GCCCGATGTTATTGCCTGAA 58.611 50.000 0.00 0.00 0.00 3.02
3159 5855 2.939103 CCTGAATTGTTCTTAGGCGGAG 59.061 50.000 0.00 0.00 0.00 4.63
3276 5974 7.421530 TCCTTCTTGTCGATAAAAGAACAAG 57.578 36.000 13.67 9.10 37.46 3.16
3382 6080 0.250467 GTGCTTCTGACAAGGCAGGA 60.250 55.000 2.58 0.00 36.55 3.86
3383 6081 0.694771 TGCTTCTGACAAGGCAGGAT 59.305 50.000 2.58 0.00 36.55 3.24
3529 6227 4.741676 CACAATGAGTTTGGAAGAAACAGC 59.258 41.667 0.00 0.00 39.80 4.40
3536 6234 4.096984 AGTTTGGAAGAAACAGCTTGACAG 59.903 41.667 0.00 0.00 32.81 3.51
3672 6370 7.967890 AAGGTCTGGCAATTTTTAGAAAATG 57.032 32.000 0.00 0.00 0.00 2.32
3676 6374 7.870445 GGTCTGGCAATTTTTAGAAAATGTGTA 59.130 33.333 0.00 0.00 30.11 2.90
3677 6375 8.915654 GTCTGGCAATTTTTAGAAAATGTGTAG 58.084 33.333 0.00 4.94 30.11 2.74
3845 6547 1.228063 ACCAGCCTGCACTCAACAG 60.228 57.895 0.00 0.00 34.82 3.16
4026 6728 2.166459 GCCTGGGCCAAGAAAGAATTAC 59.834 50.000 9.44 0.00 34.56 1.89
4079 6781 5.283457 AGTAATCTGTATGGAGTTGCCTC 57.717 43.478 0.00 0.00 37.63 4.70
4092 6794 1.553690 TTGCCTCAGCTCACCCTACC 61.554 60.000 0.00 0.00 40.80 3.18
4498 7200 0.107017 TAGGATTGCAGGAAGCCAGC 60.107 55.000 11.99 0.00 43.21 4.85
4522 7225 1.134551 TCTGGTTGCCTTTTTGTTGCC 60.135 47.619 0.00 0.00 0.00 4.52
4583 7286 0.793861 TTCTCATCGGGCGAAAAACG 59.206 50.000 0.00 0.00 45.66 3.60
4678 7381 7.411157 GCAATGTCTTGTTCTTTAATGTCATGC 60.411 37.037 0.00 0.00 34.69 4.06
4743 7486 2.530497 CGGACGTTGTGGTGTGTGG 61.530 63.158 0.00 0.00 0.00 4.17
4744 7487 2.184167 GGACGTTGTGGTGTGTGGG 61.184 63.158 0.00 0.00 0.00 4.61
4833 7577 6.261603 TGTGAAAGCAGCTATGAAATGGATAG 59.738 38.462 0.00 0.00 0.00 2.08
4835 7579 6.484643 TGAAAGCAGCTATGAAATGGATAGAC 59.515 38.462 0.00 0.00 0.00 2.59
4866 7610 4.454504 TCGAAAATTAGTTTCTGAGCCCAC 59.545 41.667 3.71 0.00 43.07 4.61
4868 7612 3.418684 AATTAGTTTCTGAGCCCACGT 57.581 42.857 0.00 0.00 0.00 4.49
5120 7864 5.971202 CCTTTTACCAATAAAGTAGCATGCG 59.029 40.000 13.01 0.00 31.90 4.73
5143 7887 6.422223 CGTAGGTGCTTAATGCTTAATTGAG 58.578 40.000 0.00 0.00 43.37 3.02
5224 7968 0.675633 AACACTGCATTGCAAGGACC 59.324 50.000 16.56 0.00 38.41 4.46
5309 8053 3.449377 TGAAGGCTGGTAATCATGTCGTA 59.551 43.478 0.00 0.00 0.00 3.43
5343 8087 1.118965 TGGAGGGTTCGCTGTCAAGA 61.119 55.000 0.00 0.00 0.00 3.02
5372 8116 1.616865 CTTGGTACCAACCTCGTCAGA 59.383 52.381 23.69 0.00 46.91 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.122278 CGATGTGTCGTAATGAACCGTTT 59.878 43.478 0.00 0.00 42.78 3.60
1 2 2.664568 CGATGTGTCGTAATGAACCGTT 59.335 45.455 0.00 0.00 42.78 4.44
2 3 2.256174 CGATGTGTCGTAATGAACCGT 58.744 47.619 0.00 0.00 42.78 4.83
3 4 2.971210 CGATGTGTCGTAATGAACCG 57.029 50.000 0.00 0.00 42.78 4.44
13 14 3.060761 CAGTGAAACCATACGATGTGTCG 59.939 47.826 0.00 0.00 46.63 4.35
14 15 3.181520 GCAGTGAAACCATACGATGTGTC 60.182 47.826 0.00 0.00 37.80 3.67
15 16 2.742053 GCAGTGAAACCATACGATGTGT 59.258 45.455 0.00 0.00 37.80 3.72
16 17 2.222796 CGCAGTGAAACCATACGATGTG 60.223 50.000 0.00 0.00 37.80 3.21
17 18 1.999735 CGCAGTGAAACCATACGATGT 59.000 47.619 0.00 0.00 37.80 3.06
18 19 1.999735 ACGCAGTGAAACCATACGATG 59.000 47.619 0.00 0.00 42.51 3.84
19 20 2.380084 ACGCAGTGAAACCATACGAT 57.620 45.000 0.00 0.00 42.51 3.73
20 21 3.898380 ACGCAGTGAAACCATACGA 57.102 47.368 0.00 0.00 42.51 3.43
33 34 6.461698 GTGATTAAACGTTTCTAATGACGCAG 59.538 38.462 18.42 0.00 42.67 5.18
34 35 6.301108 GTGATTAAACGTTTCTAATGACGCA 58.699 36.000 18.42 4.45 42.67 5.24
35 36 5.731263 GGTGATTAAACGTTTCTAATGACGC 59.269 40.000 18.42 8.19 42.67 5.19
36 37 5.949787 CGGTGATTAAACGTTTCTAATGACG 59.050 40.000 18.42 11.43 44.34 4.35
37 38 7.052565 TCGGTGATTAAACGTTTCTAATGAC 57.947 36.000 18.42 15.76 0.00 3.06
38 39 7.010738 GGATCGGTGATTAAACGTTTCTAATGA 59.989 37.037 18.42 4.16 0.00 2.57
39 40 7.123830 GGATCGGTGATTAAACGTTTCTAATG 58.876 38.462 18.42 3.25 0.00 1.90
40 41 6.259387 GGGATCGGTGATTAAACGTTTCTAAT 59.741 38.462 18.42 12.66 0.00 1.73
41 42 5.581874 GGGATCGGTGATTAAACGTTTCTAA 59.418 40.000 18.42 7.80 0.00 2.10
42 43 5.111293 GGGATCGGTGATTAAACGTTTCTA 58.889 41.667 18.42 7.53 0.00 2.10
43 44 3.937079 GGGATCGGTGATTAAACGTTTCT 59.063 43.478 18.42 6.25 0.00 2.52
44 45 3.685756 TGGGATCGGTGATTAAACGTTTC 59.314 43.478 18.42 3.94 0.00 2.78
45 46 3.437741 GTGGGATCGGTGATTAAACGTTT 59.562 43.478 18.90 18.90 0.00 3.60
46 47 3.004862 GTGGGATCGGTGATTAAACGTT 58.995 45.455 0.00 0.00 0.00 3.99
47 48 2.027929 TGTGGGATCGGTGATTAAACGT 60.028 45.455 0.00 0.00 0.00 3.99
48 49 2.350498 GTGTGGGATCGGTGATTAAACG 59.650 50.000 0.00 0.00 0.00 3.60
49 50 2.350498 CGTGTGGGATCGGTGATTAAAC 59.650 50.000 0.00 0.00 0.00 2.01
50 51 2.027929 ACGTGTGGGATCGGTGATTAAA 60.028 45.455 0.00 0.00 0.00 1.52
51 52 1.551430 ACGTGTGGGATCGGTGATTAA 59.449 47.619 0.00 0.00 0.00 1.40
52 53 1.134936 CACGTGTGGGATCGGTGATTA 60.135 52.381 7.58 0.00 0.00 1.75
53 54 0.391130 CACGTGTGGGATCGGTGATT 60.391 55.000 7.58 0.00 0.00 2.57
54 55 1.218047 CACGTGTGGGATCGGTGAT 59.782 57.895 7.58 0.00 0.00 3.06
55 56 2.204461 ACACGTGTGGGATCGGTGA 61.204 57.895 22.71 0.00 34.19 4.02
56 57 2.027073 CACACGTGTGGGATCGGTG 61.027 63.158 35.65 11.41 42.10 4.94
57 58 1.750341 TTCACACGTGTGGGATCGGT 61.750 55.000 39.88 6.26 43.39 4.69
58 59 0.601576 TTTCACACGTGTGGGATCGG 60.602 55.000 39.88 19.35 43.39 4.18
59 60 0.790207 CTTTCACACGTGTGGGATCG 59.210 55.000 39.88 23.32 43.39 3.69
60 61 2.163818 TCTTTCACACGTGTGGGATC 57.836 50.000 39.88 0.00 43.39 3.36
61 62 2.631160 TTCTTTCACACGTGTGGGAT 57.369 45.000 39.88 9.41 43.39 3.85
62 63 2.631160 ATTCTTTCACACGTGTGGGA 57.369 45.000 39.88 31.24 45.65 4.37
63 64 3.708563 AAATTCTTTCACACGTGTGGG 57.291 42.857 39.88 29.89 45.65 4.61
64 65 5.204833 CACTAAATTCTTTCACACGTGTGG 58.795 41.667 39.88 27.41 45.65 4.17
65 66 5.676744 CACACTAAATTCTTTCACACGTGTG 59.323 40.000 37.04 37.04 46.91 3.82
66 67 5.353123 ACACACTAAATTCTTTCACACGTGT 59.647 36.000 17.22 17.22 33.82 4.49
67 68 5.676744 CACACACTAAATTCTTTCACACGTG 59.323 40.000 15.48 15.48 0.00 4.49
68 69 5.353123 ACACACACTAAATTCTTTCACACGT 59.647 36.000 0.00 0.00 0.00 4.49
69 70 5.806286 ACACACACTAAATTCTTTCACACG 58.194 37.500 0.00 0.00 0.00 4.49
70 71 6.020678 GCAACACACACTAAATTCTTTCACAC 60.021 38.462 0.00 0.00 0.00 3.82
71 72 6.033341 GCAACACACACTAAATTCTTTCACA 58.967 36.000 0.00 0.00 0.00 3.58
72 73 6.033341 TGCAACACACACTAAATTCTTTCAC 58.967 36.000 0.00 0.00 0.00 3.18
73 74 6.201226 TGCAACACACACTAAATTCTTTCA 57.799 33.333 0.00 0.00 0.00 2.69
74 75 7.558137 CAATGCAACACACACTAAATTCTTTC 58.442 34.615 0.00 0.00 0.00 2.62
75 76 6.018832 GCAATGCAACACACACTAAATTCTTT 60.019 34.615 0.00 0.00 0.00 2.52
76 77 5.463061 GCAATGCAACACACACTAAATTCTT 59.537 36.000 0.00 0.00 0.00 2.52
77 78 4.984161 GCAATGCAACACACACTAAATTCT 59.016 37.500 0.00 0.00 0.00 2.40
78 79 4.744137 TGCAATGCAACACACACTAAATTC 59.256 37.500 5.01 0.00 34.76 2.17
79 80 4.507388 GTGCAATGCAACACACACTAAATT 59.493 37.500 10.44 0.00 41.47 1.82
80 81 4.050553 GTGCAATGCAACACACACTAAAT 58.949 39.130 10.44 0.00 41.47 1.40
81 82 3.119352 TGTGCAATGCAACACACACTAAA 60.119 39.130 10.44 0.00 41.67 1.85
82 83 2.424956 TGTGCAATGCAACACACACTAA 59.575 40.909 10.44 0.00 41.67 2.24
83 84 2.019984 TGTGCAATGCAACACACACTA 58.980 42.857 10.44 0.00 41.67 2.74
84 85 0.816373 TGTGCAATGCAACACACACT 59.184 45.000 10.44 0.00 41.67 3.55
85 86 3.342395 TGTGCAATGCAACACACAC 57.658 47.368 10.44 8.59 41.67 3.82
88 89 0.667453 ATCGTGTGCAATGCAACACA 59.333 45.000 27.13 15.81 44.19 3.72
89 90 1.769733 AATCGTGTGCAATGCAACAC 58.230 45.000 22.03 22.03 41.47 3.32
90 91 2.291741 TGTAATCGTGTGCAATGCAACA 59.708 40.909 10.44 5.98 41.47 3.33
91 92 2.927429 TGTAATCGTGTGCAATGCAAC 58.073 42.857 10.44 9.78 41.47 4.17
92 93 3.846423 ATGTAATCGTGTGCAATGCAA 57.154 38.095 10.44 0.00 41.47 4.08
93 94 3.846423 AATGTAATCGTGTGCAATGCA 57.154 38.095 2.72 2.72 35.60 3.96
94 95 4.201608 CCAAAATGTAATCGTGTGCAATGC 60.202 41.667 0.00 0.00 0.00 3.56
95 96 5.159925 TCCAAAATGTAATCGTGTGCAATG 58.840 37.500 0.00 0.00 0.00 2.82
96 97 5.384063 TCCAAAATGTAATCGTGTGCAAT 57.616 34.783 0.00 0.00 0.00 3.56
97 98 4.837896 TCCAAAATGTAATCGTGTGCAA 57.162 36.364 0.00 0.00 0.00 4.08
98 99 4.320861 CCTTCCAAAATGTAATCGTGTGCA 60.321 41.667 0.00 0.00 0.00 4.57
99 100 4.165779 CCTTCCAAAATGTAATCGTGTGC 58.834 43.478 0.00 0.00 0.00 4.57
100 101 4.165779 GCCTTCCAAAATGTAATCGTGTG 58.834 43.478 0.00 0.00 0.00 3.82
101 102 3.192633 GGCCTTCCAAAATGTAATCGTGT 59.807 43.478 0.00 0.00 0.00 4.49
102 103 3.443681 AGGCCTTCCAAAATGTAATCGTG 59.556 43.478 0.00 0.00 33.74 4.35
103 104 3.694566 GAGGCCTTCCAAAATGTAATCGT 59.305 43.478 6.77 0.00 33.74 3.73
104 105 3.947834 AGAGGCCTTCCAAAATGTAATCG 59.052 43.478 6.77 0.00 33.74 3.34
105 106 4.098501 CCAGAGGCCTTCCAAAATGTAATC 59.901 45.833 6.77 0.00 33.74 1.75
106 107 4.026052 CCAGAGGCCTTCCAAAATGTAAT 58.974 43.478 6.77 0.00 33.74 1.89
107 108 3.075283 TCCAGAGGCCTTCCAAAATGTAA 59.925 43.478 6.77 0.00 33.74 2.41
108 109 2.647299 TCCAGAGGCCTTCCAAAATGTA 59.353 45.455 6.77 0.00 33.74 2.29
109 110 1.428912 TCCAGAGGCCTTCCAAAATGT 59.571 47.619 6.77 0.00 33.74 2.71
110 111 2.220653 TCCAGAGGCCTTCCAAAATG 57.779 50.000 6.77 0.00 33.74 2.32
111 112 3.479866 AATCCAGAGGCCTTCCAAAAT 57.520 42.857 6.77 0.00 33.74 1.82
112 113 2.999185 AATCCAGAGGCCTTCCAAAA 57.001 45.000 6.77 0.00 33.74 2.44
113 114 4.280819 CAATAATCCAGAGGCCTTCCAAA 58.719 43.478 6.77 0.00 33.74 3.28
114 115 3.902218 CAATAATCCAGAGGCCTTCCAA 58.098 45.455 6.77 0.00 33.74 3.53
115 116 2.423373 GCAATAATCCAGAGGCCTTCCA 60.423 50.000 6.77 0.00 33.74 3.53
116 117 2.158549 AGCAATAATCCAGAGGCCTTCC 60.159 50.000 6.77 0.00 0.00 3.46
117 118 3.145286 GAGCAATAATCCAGAGGCCTTC 58.855 50.000 6.77 0.00 0.00 3.46
118 119 2.158549 GGAGCAATAATCCAGAGGCCTT 60.159 50.000 6.77 0.00 36.79 4.35
119 120 1.423161 GGAGCAATAATCCAGAGGCCT 59.577 52.381 3.86 3.86 36.79 5.19
120 121 1.143684 TGGAGCAATAATCCAGAGGCC 59.856 52.381 0.00 0.00 41.96 5.19
121 122 2.645838 TGGAGCAATAATCCAGAGGC 57.354 50.000 0.00 0.00 41.96 4.70
127 128 3.199946 TCGGGGATATGGAGCAATAATCC 59.800 47.826 0.00 0.00 37.35 3.01
128 129 4.192317 GTCGGGGATATGGAGCAATAATC 58.808 47.826 0.00 0.00 0.00 1.75
129 130 3.369471 CGTCGGGGATATGGAGCAATAAT 60.369 47.826 0.00 0.00 0.00 1.28
130 131 2.028476 CGTCGGGGATATGGAGCAATAA 60.028 50.000 0.00 0.00 0.00 1.40
131 132 1.548719 CGTCGGGGATATGGAGCAATA 59.451 52.381 0.00 0.00 0.00 1.90
132 133 0.321671 CGTCGGGGATATGGAGCAAT 59.678 55.000 0.00 0.00 0.00 3.56
133 134 1.745890 CGTCGGGGATATGGAGCAA 59.254 57.895 0.00 0.00 0.00 3.91
134 135 2.207229 CCGTCGGGGATATGGAGCA 61.207 63.158 2.34 0.00 38.47 4.26
135 136 1.755393 AACCGTCGGGGATATGGAGC 61.755 60.000 17.28 0.00 39.97 4.70
136 137 0.756903 AAACCGTCGGGGATATGGAG 59.243 55.000 17.28 0.00 39.97 3.86
137 138 0.754472 GAAACCGTCGGGGATATGGA 59.246 55.000 17.28 0.00 39.97 3.41
138 139 0.756903 AGAAACCGTCGGGGATATGG 59.243 55.000 17.28 0.00 39.97 2.74
139 140 1.540363 CCAGAAACCGTCGGGGATATG 60.540 57.143 17.28 8.39 37.90 1.78
140 141 0.756903 CCAGAAACCGTCGGGGATAT 59.243 55.000 17.28 0.00 37.90 1.63
141 142 2.204748 CCAGAAACCGTCGGGGATA 58.795 57.895 17.28 0.00 37.90 2.59
142 143 2.987125 CCAGAAACCGTCGGGGAT 59.013 61.111 17.28 0.20 37.90 3.85
145 146 2.047560 GACCCAGAAACCGTCGGG 60.048 66.667 17.28 1.81 42.50 5.14
146 147 2.431942 CGACCCAGAAACCGTCGG 60.432 66.667 10.48 10.48 44.26 4.79
148 149 1.068585 ACACGACCCAGAAACCGTC 59.931 57.895 0.00 0.00 32.50 4.79
149 150 1.227438 CACACGACCCAGAAACCGT 60.227 57.895 0.00 0.00 35.46 4.83
150 151 1.959226 CCACACGACCCAGAAACCG 60.959 63.158 0.00 0.00 0.00 4.44
151 152 1.599797 CCCACACGACCCAGAAACC 60.600 63.158 0.00 0.00 0.00 3.27
152 153 0.179040 TTCCCACACGACCCAGAAAC 60.179 55.000 0.00 0.00 0.00 2.78
153 154 0.107831 CTTCCCACACGACCCAGAAA 59.892 55.000 0.00 0.00 0.00 2.52
154 155 1.752198 CTTCCCACACGACCCAGAA 59.248 57.895 0.00 0.00 0.00 3.02
155 156 2.214216 CCTTCCCACACGACCCAGA 61.214 63.158 0.00 0.00 0.00 3.86
156 157 2.214216 TCCTTCCCACACGACCCAG 61.214 63.158 0.00 0.00 0.00 4.45
157 158 2.122769 TCCTTCCCACACGACCCA 60.123 61.111 0.00 0.00 0.00 4.51
158 159 2.346365 GTCCTTCCCACACGACCC 59.654 66.667 0.00 0.00 0.00 4.46
159 160 1.301479 GTGTCCTTCCCACACGACC 60.301 63.158 0.00 0.00 35.14 4.79
160 161 1.301479 GGTGTCCTTCCCACACGAC 60.301 63.158 0.00 0.00 44.42 4.34
161 162 2.513259 GGGTGTCCTTCCCACACGA 61.513 63.158 0.00 0.00 44.42 4.35
162 163 1.189524 TAGGGTGTCCTTCCCACACG 61.190 60.000 3.79 0.00 46.82 4.49
163 164 1.209747 GATAGGGTGTCCTTCCCACAC 59.790 57.143 3.79 0.00 46.82 3.82
164 165 1.580059 GATAGGGTGTCCTTCCCACA 58.420 55.000 3.79 0.00 46.82 4.17
165 166 0.464452 CGATAGGGTGTCCTTCCCAC 59.536 60.000 3.79 0.00 46.82 4.61
166 167 0.042131 ACGATAGGGTGTCCTTCCCA 59.958 55.000 3.79 0.00 46.82 4.37
167 168 0.751452 GACGATAGGGTGTCCTTCCC 59.249 60.000 0.00 0.00 41.56 3.97
173 174 1.134560 GAGTGTGGACGATAGGGTGTC 59.865 57.143 0.00 0.00 43.77 3.67
174 175 1.183549 GAGTGTGGACGATAGGGTGT 58.816 55.000 0.00 0.00 43.77 4.16
175 176 1.135083 GTGAGTGTGGACGATAGGGTG 60.135 57.143 0.00 0.00 43.77 4.61
176 177 1.183549 GTGAGTGTGGACGATAGGGT 58.816 55.000 0.00 0.00 43.77 4.34
177 178 1.475403 AGTGAGTGTGGACGATAGGG 58.525 55.000 0.00 0.00 43.77 3.53
178 179 2.492088 TCAAGTGAGTGTGGACGATAGG 59.508 50.000 0.00 0.00 43.77 2.57
179 180 3.502920 GTCAAGTGAGTGTGGACGATAG 58.497 50.000 0.00 0.00 46.19 2.08
180 181 3.570926 GTCAAGTGAGTGTGGACGATA 57.429 47.619 0.00 0.00 0.00 2.92
181 182 2.440539 GTCAAGTGAGTGTGGACGAT 57.559 50.000 0.00 0.00 0.00 3.73
182 183 3.959478 GTCAAGTGAGTGTGGACGA 57.041 52.632 0.00 0.00 0.00 4.20
183 184 2.506544 CGTCAAGTGAGTGTGGACG 58.493 57.895 0.00 0.00 44.13 4.79
184 185 1.488527 GTCGTCAAGTGAGTGTGGAC 58.511 55.000 0.00 0.00 0.00 4.02
185 186 0.030235 CGTCGTCAAGTGAGTGTGGA 59.970 55.000 0.00 0.00 0.00 4.02
186 187 0.939577 CCGTCGTCAAGTGAGTGTGG 60.940 60.000 0.00 0.00 0.00 4.17
187 188 0.248907 ACCGTCGTCAAGTGAGTGTG 60.249 55.000 0.00 0.00 0.00 3.82
188 189 0.030369 GACCGTCGTCAAGTGAGTGT 59.970 55.000 0.00 0.00 38.99 3.55
189 190 0.663568 GGACCGTCGTCAAGTGAGTG 60.664 60.000 0.00 0.00 41.13 3.51
190 191 1.658673 GGACCGTCGTCAAGTGAGT 59.341 57.895 0.00 0.00 41.13 3.41
191 192 1.080705 GGGACCGTCGTCAAGTGAG 60.081 63.158 0.00 0.00 41.13 3.51
192 193 1.393487 TTGGGACCGTCGTCAAGTGA 61.393 55.000 0.00 0.00 41.13 3.41
193 194 0.531090 TTTGGGACCGTCGTCAAGTG 60.531 55.000 6.20 0.00 41.13 3.16
194 195 0.395312 ATTTGGGACCGTCGTCAAGT 59.605 50.000 6.20 2.32 41.13 3.16
195 196 0.796312 CATTTGGGACCGTCGTCAAG 59.204 55.000 6.20 0.00 41.13 3.02
196 197 1.231958 GCATTTGGGACCGTCGTCAA 61.232 55.000 0.00 2.88 41.13 3.18
197 198 1.669760 GCATTTGGGACCGTCGTCA 60.670 57.895 0.00 0.00 41.13 4.35
198 199 2.396157 GGCATTTGGGACCGTCGTC 61.396 63.158 0.00 0.00 38.38 4.20
199 200 2.359478 GGCATTTGGGACCGTCGT 60.359 61.111 0.00 0.00 0.00 4.34
200 201 1.714899 GATGGCATTTGGGACCGTCG 61.715 60.000 0.00 0.00 30.24 5.12
201 202 1.714899 CGATGGCATTTGGGACCGTC 61.715 60.000 0.00 0.00 36.35 4.79
202 203 1.748879 CGATGGCATTTGGGACCGT 60.749 57.895 0.00 0.00 0.00 4.83
203 204 3.110139 CGATGGCATTTGGGACCG 58.890 61.111 0.00 0.00 0.00 4.79
204 205 2.807622 GCGATGGCATTTGGGACC 59.192 61.111 0.00 0.00 39.62 4.46
205 206 2.408835 CGCGATGGCATTTGGGAC 59.591 61.111 0.00 0.00 39.92 4.46
206 207 2.828095 CCGCGATGGCATTTGGGA 60.828 61.111 8.23 0.00 39.92 4.37
207 208 1.943116 TTTCCGCGATGGCATTTGGG 61.943 55.000 8.23 6.10 39.92 4.12
208 209 0.526096 CTTTCCGCGATGGCATTTGG 60.526 55.000 8.23 4.29 39.92 3.28
209 210 0.451383 TCTTTCCGCGATGGCATTTG 59.549 50.000 8.23 0.00 39.92 2.32
210 211 0.734889 CTCTTTCCGCGATGGCATTT 59.265 50.000 8.23 0.00 39.92 2.32
211 212 0.392998 ACTCTTTCCGCGATGGCATT 60.393 50.000 8.23 0.00 39.92 3.56
212 213 0.392998 AACTCTTTCCGCGATGGCAT 60.393 50.000 8.23 0.00 39.92 4.40
213 214 0.248012 TAACTCTTTCCGCGATGGCA 59.752 50.000 8.23 0.00 39.92 4.92
214 215 1.365699 TTAACTCTTTCCGCGATGGC 58.634 50.000 8.23 0.00 37.80 4.40
215 216 4.083484 AGTTTTTAACTCTTTCCGCGATGG 60.083 41.667 8.23 0.00 37.02 3.51
216 217 4.846137 CAGTTTTTAACTCTTTCCGCGATG 59.154 41.667 8.23 0.00 40.46 3.84
217 218 4.514066 ACAGTTTTTAACTCTTTCCGCGAT 59.486 37.500 8.23 0.00 40.46 4.58
218 219 3.872771 ACAGTTTTTAACTCTTTCCGCGA 59.127 39.130 8.23 0.00 40.46 5.87
219 220 4.205323 ACAGTTTTTAACTCTTTCCGCG 57.795 40.909 0.00 0.00 40.46 6.46
220 221 5.803461 ACAAACAGTTTTTAACTCTTTCCGC 59.197 36.000 0.00 0.00 40.46 5.54
225 226 9.946165 GTGCTATACAAACAGTTTTTAACTCTT 57.054 29.630 0.00 0.00 40.46 2.85
226 227 8.565416 GGTGCTATACAAACAGTTTTTAACTCT 58.435 33.333 0.00 0.00 40.46 3.24
227 228 7.532884 CGGTGCTATACAAACAGTTTTTAACTC 59.467 37.037 0.00 0.00 40.46 3.01
228 229 7.227116 TCGGTGCTATACAAACAGTTTTTAACT 59.773 33.333 0.00 0.00 44.06 2.24
229 230 7.321984 GTCGGTGCTATACAAACAGTTTTTAAC 59.678 37.037 0.00 0.00 0.00 2.01
230 231 7.354257 GTCGGTGCTATACAAACAGTTTTTAA 58.646 34.615 0.00 0.00 0.00 1.52
231 232 6.346758 CGTCGGTGCTATACAAACAGTTTTTA 60.347 38.462 0.00 0.00 0.00 1.52
232 233 5.559417 CGTCGGTGCTATACAAACAGTTTTT 60.559 40.000 0.00 0.00 0.00 1.94
233 234 4.084223 CGTCGGTGCTATACAAACAGTTTT 60.084 41.667 0.00 0.00 0.00 2.43
234 235 3.430895 CGTCGGTGCTATACAAACAGTTT 59.569 43.478 0.00 0.00 0.00 2.66
235 236 2.991190 CGTCGGTGCTATACAAACAGTT 59.009 45.455 0.00 0.00 0.00 3.16
236 237 2.602878 CGTCGGTGCTATACAAACAGT 58.397 47.619 0.00 0.00 0.00 3.55
237 238 1.323534 GCGTCGGTGCTATACAAACAG 59.676 52.381 0.00 0.00 0.00 3.16
238 239 1.352114 GCGTCGGTGCTATACAAACA 58.648 50.000 0.00 0.00 0.00 2.83
239 240 0.296642 CGCGTCGGTGCTATACAAAC 59.703 55.000 0.00 0.00 0.00 2.93
240 241 0.109179 ACGCGTCGGTGCTATACAAA 60.109 50.000 5.58 0.00 0.00 2.83
241 242 0.731994 TACGCGTCGGTGCTATACAA 59.268 50.000 18.63 0.00 0.00 2.41
242 243 0.027979 GTACGCGTCGGTGCTATACA 59.972 55.000 18.63 0.00 0.00 2.29
243 244 0.658536 GGTACGCGTCGGTGCTATAC 60.659 60.000 18.63 4.42 0.00 1.47
244 245 1.094650 TGGTACGCGTCGGTGCTATA 61.095 55.000 18.63 0.00 0.00 1.31
245 246 1.936436 TTGGTACGCGTCGGTGCTAT 61.936 55.000 18.63 0.00 0.00 2.97
246 247 1.936436 ATTGGTACGCGTCGGTGCTA 61.936 55.000 18.63 0.00 0.00 3.49
247 248 3.291101 ATTGGTACGCGTCGGTGCT 62.291 57.895 18.63 0.00 0.00 4.40
248 249 2.812178 ATTGGTACGCGTCGGTGC 60.812 61.111 18.63 1.73 0.00 5.01
249 250 1.444724 TCATTGGTACGCGTCGGTG 60.445 57.895 18.63 9.37 0.00 4.94
250 251 1.444895 GTCATTGGTACGCGTCGGT 60.445 57.895 18.63 0.00 0.00 4.69
251 252 0.099259 TAGTCATTGGTACGCGTCGG 59.901 55.000 18.63 0.00 0.00 4.79
252 253 1.186030 GTAGTCATTGGTACGCGTCG 58.814 55.000 18.63 0.00 0.00 5.12
253 254 2.159476 TGAGTAGTCATTGGTACGCGTC 60.159 50.000 18.63 7.69 0.00 5.19
254 255 1.814394 TGAGTAGTCATTGGTACGCGT 59.186 47.619 19.17 19.17 0.00 6.01
255 256 2.554806 TGAGTAGTCATTGGTACGCG 57.445 50.000 3.53 3.53 0.00 6.01
256 257 8.583810 TTATTATTGAGTAGTCATTGGTACGC 57.416 34.615 0.00 0.00 30.85 4.42
259 260 9.502091 GCCATTATTATTGAGTAGTCATTGGTA 57.498 33.333 0.00 0.00 30.85 3.25
260 261 7.448469 GGCCATTATTATTGAGTAGTCATTGGT 59.552 37.037 0.00 0.00 30.85 3.67
261 262 7.094205 GGGCCATTATTATTGAGTAGTCATTGG 60.094 40.741 4.39 2.46 30.85 3.16
262 263 7.094205 GGGGCCATTATTATTGAGTAGTCATTG 60.094 40.741 4.39 0.00 30.85 2.82
263 264 6.948309 GGGGCCATTATTATTGAGTAGTCATT 59.052 38.462 4.39 0.50 30.85 2.57
264 265 6.045459 TGGGGCCATTATTATTGAGTAGTCAT 59.955 38.462 4.39 0.00 30.85 3.06
265 266 5.371176 TGGGGCCATTATTATTGAGTAGTCA 59.629 40.000 4.39 0.00 0.00 3.41
266 267 5.876357 TGGGGCCATTATTATTGAGTAGTC 58.124 41.667 4.39 0.00 0.00 2.59
267 268 5.222130 CCTGGGGCCATTATTATTGAGTAGT 60.222 44.000 4.39 0.00 0.00 2.73
268 269 5.222130 ACCTGGGGCCATTATTATTGAGTAG 60.222 44.000 4.39 0.00 0.00 2.57
269 270 4.667858 ACCTGGGGCCATTATTATTGAGTA 59.332 41.667 4.39 0.00 0.00 2.59
270 271 3.467103 ACCTGGGGCCATTATTATTGAGT 59.533 43.478 4.39 0.00 0.00 3.41
348 349 2.019249 TGTCGTCCGATCTAACCGAAT 58.981 47.619 0.00 0.00 0.00 3.34
354 355 2.223735 GCCTTCATGTCGTCCGATCTAA 60.224 50.000 0.00 0.00 0.00 2.10
355 356 1.337071 GCCTTCATGTCGTCCGATCTA 59.663 52.381 0.00 0.00 0.00 1.98
369 370 3.452786 CCTCTCGAGGCGCCTTCA 61.453 66.667 33.34 19.22 42.44 3.02
434 438 3.230245 CCTCCCTAGGCTGCTCGG 61.230 72.222 2.05 0.00 35.64 4.63
444 448 1.481802 CCTAATGTACCCGCCTCCCTA 60.482 57.143 0.00 0.00 0.00 3.53
662 678 3.610637 TTTTTACCACGTCCTCCCG 57.389 52.632 0.00 0.00 0.00 5.14
681 697 6.161381 ACGTATTTTGGAGTATCGACTTTGT 58.839 36.000 0.00 0.00 35.45 2.83
682 698 6.642683 ACGTATTTTGGAGTATCGACTTTG 57.357 37.500 0.00 0.00 35.45 2.77
686 702 6.636666 TCAAACGTATTTTGGAGTATCGAC 57.363 37.500 0.00 0.00 44.30 4.20
702 722 8.395940 TGTTCGAAAATGTTATTTTCAAACGT 57.604 26.923 20.54 0.00 37.84 3.99
725 745 7.571080 AAATGTGGCAAAAGAAAATTGATGT 57.429 28.000 0.00 0.00 0.00 3.06
851 3534 1.802365 GGACGCGGTGAACAGTAAAAT 59.198 47.619 12.47 0.00 0.00 1.82
852 3535 1.219646 GGACGCGGTGAACAGTAAAA 58.780 50.000 12.47 0.00 0.00 1.52
853 3536 0.104487 TGGACGCGGTGAACAGTAAA 59.896 50.000 12.47 0.00 0.00 2.01
854 3537 0.319211 CTGGACGCGGTGAACAGTAA 60.319 55.000 12.47 0.00 0.00 2.24
863 3546 1.888436 ATGTGACATCTGGACGCGGT 61.888 55.000 12.47 0.00 0.00 5.68
952 3636 1.199558 GTGGTAGAGTGAGTGGTCGAC 59.800 57.143 7.13 7.13 0.00 4.20
1046 3730 2.546368 GAGAGAGCATATGACGAGACGT 59.454 50.000 6.97 0.00 45.10 4.34
1261 3945 5.786401 CTGGTCAGCACAACTAGATTAAC 57.214 43.478 0.00 0.00 0.00 2.01
1305 3989 2.768503 TAACGCCCAAGAACCGGACG 62.769 60.000 9.46 0.74 0.00 4.79
1404 4088 1.267121 TTAGTGGTGACTGAGAGGGC 58.733 55.000 0.00 0.00 33.21 5.19
1428 4112 7.564793 TGGGGATAATCATGGATATAAAGTCG 58.435 38.462 0.00 0.00 0.00 4.18
1478 4162 8.853345 GTTGAACAAGAACACAAATATAGCATG 58.147 33.333 0.00 0.00 0.00 4.06
1612 4296 7.026631 AGTATCTCTTGATGTCTTCTCTTCG 57.973 40.000 0.00 0.00 34.32 3.79
1756 4440 5.028678 TGACATATGGTGAGGAGGGATAT 57.971 43.478 7.80 0.00 0.00 1.63
1795 4479 4.151883 AGGTCAAGGAATTTTGCTGCTTA 58.848 39.130 0.00 0.00 0.00 3.09
1995 4679 2.821378 TGTGAATTGTCCTTGCCATCAG 59.179 45.455 0.00 0.00 0.00 2.90
1996 4680 2.874014 TGTGAATTGTCCTTGCCATCA 58.126 42.857 0.00 0.00 0.00 3.07
2045 4729 6.396829 CTCTTTGGAGGAGAACATGTTTTT 57.603 37.500 13.36 4.33 36.03 1.94
2059 4743 1.098050 CGGGATTTGCCTCTTTGGAG 58.902 55.000 0.00 0.00 38.35 3.86
2060 4744 0.404040 ACGGGATTTGCCTCTTTGGA 59.596 50.000 0.00 0.00 38.35 3.53
2061 4745 0.811281 GACGGGATTTGCCTCTTTGG 59.189 55.000 0.00 0.00 36.66 3.28
2062 4746 1.826385 AGACGGGATTTGCCTCTTTG 58.174 50.000 0.00 0.00 36.66 2.77
2077 4761 1.294659 GAGGGCTTGCACTGAAGACG 61.295 60.000 0.62 0.00 30.87 4.18
2115 4799 1.538047 AACACCACATGGATCAGCAC 58.462 50.000 4.53 0.00 38.94 4.40
2269 4953 1.145803 GTCGTACGGCAAAAGCTTCT 58.854 50.000 16.32 0.00 0.00 2.85
2281 4965 3.050619 AGAGCTTTGTTTCTGTCGTACG 58.949 45.455 9.53 9.53 0.00 3.67
2305 4989 5.168569 GGAGTTTCATGATGTCGAACAGTA 58.831 41.667 9.31 0.00 0.00 2.74
2384 5068 0.107410 TTTGACACACCGGCTTCAGT 60.107 50.000 0.00 0.00 0.00 3.41
2457 5141 3.510753 TGCATACTGGTTTGCACATTCAT 59.489 39.130 13.16 0.00 41.36 2.57
2504 5188 6.625873 ATTGTCTCTCAGTTTCAAAAGGTC 57.374 37.500 0.00 0.00 0.00 3.85
2553 5237 1.398390 GTACAAAATCCGGAGCAGCAG 59.602 52.381 11.34 0.00 0.00 4.24
2578 5262 5.163864 GCCAAATTTTGATTTCCCAATCGAC 60.164 40.000 10.72 0.00 41.77 4.20
2597 5281 9.474313 AACAGATATAGATAAACCTTTGCCAAA 57.526 29.630 0.00 0.00 0.00 3.28
2736 5420 5.778241 TGCCTTGAGAACTCCCGATATATTA 59.222 40.000 0.00 0.00 0.00 0.98
2760 5444 7.147724 TGGAATACCACAGTTAGATTCTCGATT 60.148 37.037 0.00 0.00 41.77 3.34
2811 5495 4.439968 TGCAGTCATCTTCATCTAGCTTG 58.560 43.478 0.00 0.00 0.00 4.01
2812 5496 4.750021 TGCAGTCATCTTCATCTAGCTT 57.250 40.909 0.00 0.00 0.00 3.74
3087 5783 8.642020 GCAATCAAACTTTGAAGTAAGCAATAG 58.358 33.333 8.28 0.00 43.95 1.73
3143 5839 4.020485 ACAGTTACTCCGCCTAAGAACAAT 60.020 41.667 0.00 0.00 0.00 2.71
3210 5906 4.275936 AGAATTCACAAAAACCAGAGACCG 59.724 41.667 8.44 0.00 0.00 4.79
3239 5935 7.190871 TCGACAAGAAGGAAAATGTTAACAAC 58.809 34.615 13.23 4.84 0.00 3.32
3241 5937 6.928979 TCGACAAGAAGGAAAATGTTAACA 57.071 33.333 11.41 11.41 0.00 2.41
3242 5938 9.887406 TTTATCGACAAGAAGGAAAATGTTAAC 57.113 29.630 0.00 0.00 0.00 2.01
3245 5941 8.846211 TCTTTTATCGACAAGAAGGAAAATGTT 58.154 29.630 0.00 0.00 0.00 2.71
3295 5993 8.100791 GGGGTCACTGCAAATATCATATTACTA 58.899 37.037 0.00 0.00 0.00 1.82
3382 6080 3.265221 TCTGAGAATGTGGAGCCTTTGAT 59.735 43.478 0.00 0.00 0.00 2.57
3383 6081 2.639347 TCTGAGAATGTGGAGCCTTTGA 59.361 45.455 0.00 0.00 0.00 2.69
3529 6227 1.497309 TTACCTGGCCCCCTGTCAAG 61.497 60.000 0.00 0.00 0.00 3.02
3536 6234 1.923006 GAAGAGGTTACCTGGCCCCC 61.923 65.000 9.39 0.00 31.76 5.40
3672 6370 6.970484 TGCAAGGAGAAAAATTCTTCTACAC 58.030 36.000 6.52 0.00 44.96 2.90
3701 6401 5.437191 AAGTCCTACGATTTTCCTGGATT 57.563 39.130 0.00 0.00 0.00 3.01
3702 6402 6.749036 ATAAGTCCTACGATTTTCCTGGAT 57.251 37.500 0.00 0.00 0.00 3.41
3704 6404 7.442656 ACATATAAGTCCTACGATTTTCCTGG 58.557 38.462 0.00 0.00 0.00 4.45
3845 6547 4.023707 CACAGGACATCTTCTTTTGGACAC 60.024 45.833 0.00 0.00 0.00 3.67
4026 6728 4.550076 ACTCAAATCAGAGACTTGGGAG 57.450 45.455 0.00 0.00 38.98 4.30
4079 6781 1.379977 TCTCCGGTAGGGTGAGCTG 60.380 63.158 0.00 0.00 38.33 4.24
4092 6794 0.820226 TTGCTCCTGATGTCTCTCCG 59.180 55.000 0.00 0.00 0.00 4.63
4271 6973 2.256591 CCATATGGCAGAGGCGCAC 61.257 63.158 9.29 2.06 42.47 5.34
4498 7200 3.369546 ACAAAAAGGCAACCAGAATCG 57.630 42.857 0.00 0.00 37.17 3.34
4522 7225 3.236816 CCGTTTTCAGCAGCATTAGTTG 58.763 45.455 0.00 0.00 0.00 3.16
4562 7265 2.159572 CGTTTTTCGCCCGATGAGAAAT 60.160 45.455 5.09 0.00 41.49 2.17
4743 7486 2.750350 CCTGACATATCGGCCCCC 59.250 66.667 0.00 0.00 0.00 5.40
4744 7487 2.032681 GCCTGACATATCGGCCCC 59.967 66.667 0.00 0.00 38.09 5.80
4852 7596 1.598130 GCACGTGGGCTCAGAAACT 60.598 57.895 18.88 0.00 0.00 2.66
4928 7672 5.279256 GGCCCAGCTTTCTTAAACAATGTAA 60.279 40.000 0.00 0.00 0.00 2.41
5120 7864 7.281100 ACTCTCAATTAAGCATTAAGCACCTAC 59.719 37.037 0.00 0.00 44.82 3.18
5143 7887 0.383949 CGAGCAGCCCTTCTAGACTC 59.616 60.000 0.00 0.00 0.00 3.36
5224 7968 8.306038 TCTAAGCTACTACTATAGGACTTCTCG 58.694 40.741 4.43 0.00 0.00 4.04
5309 8053 2.615493 CCCTCCACGTGATTTACTTGCT 60.615 50.000 19.30 0.00 0.00 3.91
5343 8087 2.027469 GGTTGGTACCAAGAGGATTCGT 60.027 50.000 27.77 0.00 44.36 3.85
5372 8116 1.527370 GAGAATAGGGTGCCGGCTT 59.473 57.895 29.70 12.63 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.