Multiple sequence alignment - TraesCS7D01G294900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G294900 chr7D 100.000 2933 0 0 1 2933 369284611 369281679 0.000000e+00 5417
1 TraesCS7D01G294900 chr7D 87.091 550 57 7 309 847 161134715 161134169 6.950000e-171 610
2 TraesCS7D01G294900 chr7D 97.738 221 5 0 88 308 369320974 369320754 5.930000e-102 381
3 TraesCS7D01G294900 chr7D 97.285 221 6 0 88 308 369777270 369777050 2.760000e-100 375
4 TraesCS7D01G294900 chr7D 95.475 221 10 0 88 308 241796961 241797181 1.290000e-93 353
5 TraesCS7D01G294900 chr7D 95.023 221 11 0 88 308 272754239 272754019 6.020000e-92 348
6 TraesCS7D01G294900 chr7D 97.849 93 2 0 2 94 369321132 369321040 8.410000e-36 161
7 TraesCS7D01G294900 chr7D 98.851 87 1 0 2 88 369777428 369777342 3.910000e-34 156
8 TraesCS7D01G294900 chr7B 97.868 2017 39 2 920 2933 314930669 314928654 0.000000e+00 3483
9 TraesCS7D01G294900 chr7B 85.765 562 62 14 307 854 544723923 544724480 1.960000e-161 579
10 TraesCS7D01G294900 chr7A 95.595 2066 59 9 895 2933 412893842 412895902 0.000000e+00 3282
11 TraesCS7D01G294900 chr6D 90.196 510 46 4 306 812 146943207 146943715 0.000000e+00 662
12 TraesCS7D01G294900 chr6D 97.727 88 2 0 1 88 95786614 95786527 5.060000e-33 152
13 TraesCS7D01G294900 chr3D 87.148 568 56 12 307 860 121211327 121211891 1.920000e-176 628
14 TraesCS7D01G294900 chr3D 86.894 557 59 9 307 854 380173568 380174119 1.930000e-171 612
15 TraesCS7D01G294900 chr3D 88.377 499 50 8 307 800 562219388 562219883 7.000000e-166 593
16 TraesCS7D01G294900 chr3D 96.380 221 8 0 88 308 292819692 292819912 5.970000e-97 364
17 TraesCS7D01G294900 chr3D 97.778 90 2 0 1 90 292806884 292806973 3.910000e-34 156
18 TraesCS7D01G294900 chr3D 97.727 88 2 0 1 88 152296730 152296817 5.060000e-33 152
19 TraesCS7D01G294900 chr2D 87.156 545 64 6 307 849 633895128 633895668 5.370000e-172 614
20 TraesCS7D01G294900 chr2D 96.842 95 2 1 1 94 309365091 309364997 1.090000e-34 158
21 TraesCS7D01G294900 chr2B 88.668 503 55 2 307 809 61598649 61599149 1.930000e-171 612
22 TraesCS7D01G294900 chr2B 95.111 225 10 1 85 308 263699962 263699738 1.290000e-93 353
23 TraesCS7D01G294900 chr4D 87.992 508 56 4 304 809 51959612 51960116 1.950000e-166 595
24 TraesCS7D01G294900 chr4D 95.928 221 9 0 88 308 393470340 393470560 2.780000e-95 359
25 TraesCS7D01G294900 chr4D 94.570 221 12 0 88 308 445769649 445769429 2.800000e-90 342
26 TraesCS7D01G294900 chr4D 95.789 95 3 1 1 94 483344658 483344564 5.060000e-33 152
27 TraesCS7D01G294900 chr1D 96.380 221 8 0 88 308 307651286 307651506 5.970000e-97 364
28 TraesCS7D01G294900 chr1A 94.949 99 4 1 1 99 350684647 350684550 1.410000e-33 154
29 TraesCS7D01G294900 chr5A 97.727 88 2 0 1 88 168871298 168871211 5.060000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G294900 chr7D 369281679 369284611 2932 True 5417 5417 100.000 1 2933 1 chr7D.!!$R3 2932
1 TraesCS7D01G294900 chr7D 161134169 161134715 546 True 610 610 87.091 309 847 1 chr7D.!!$R1 538
2 TraesCS7D01G294900 chr7B 314928654 314930669 2015 True 3483 3483 97.868 920 2933 1 chr7B.!!$R1 2013
3 TraesCS7D01G294900 chr7B 544723923 544724480 557 False 579 579 85.765 307 854 1 chr7B.!!$F1 547
4 TraesCS7D01G294900 chr7A 412893842 412895902 2060 False 3282 3282 95.595 895 2933 1 chr7A.!!$F1 2038
5 TraesCS7D01G294900 chr6D 146943207 146943715 508 False 662 662 90.196 306 812 1 chr6D.!!$F1 506
6 TraesCS7D01G294900 chr3D 121211327 121211891 564 False 628 628 87.148 307 860 1 chr3D.!!$F1 553
7 TraesCS7D01G294900 chr3D 380173568 380174119 551 False 612 612 86.894 307 854 1 chr3D.!!$F5 547
8 TraesCS7D01G294900 chr2D 633895128 633895668 540 False 614 614 87.156 307 849 1 chr2D.!!$F1 542
9 TraesCS7D01G294900 chr2B 61598649 61599149 500 False 612 612 88.668 307 809 1 chr2B.!!$F1 502
10 TraesCS7D01G294900 chr4D 51959612 51960116 504 False 595 595 87.992 304 809 1 chr4D.!!$F1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 235 0.593128 GCGTTCTCTTGGCAATGTGT 59.407 50.000 0.0 0.0 0.0 3.72 F
235 236 1.001378 GCGTTCTCTTGGCAATGTGTT 60.001 47.619 0.0 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1896 1928 0.387929 TCCGAAAGTCACGCTTGAGT 59.612 50.00 0.0 0.0 37.52 3.41 R
2114 2146 8.735315 TCTGAATGATAAAAAGATGCCGTTTAA 58.265 29.63 0.0 0.0 0.00 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.813296 GTCGAACAATGTTTCCTTCAGT 57.187 40.909 0.00 0.00 0.00 3.41
22 23 5.917541 GTCGAACAATGTTTCCTTCAGTA 57.082 39.130 0.00 0.00 0.00 2.74
23 24 5.916969 GTCGAACAATGTTTCCTTCAGTAG 58.083 41.667 0.00 0.00 0.00 2.57
24 25 5.694910 GTCGAACAATGTTTCCTTCAGTAGA 59.305 40.000 0.00 0.00 0.00 2.59
25 26 6.202188 GTCGAACAATGTTTCCTTCAGTAGAA 59.798 38.462 0.00 0.00 0.00 2.10
26 27 6.764085 TCGAACAATGTTTCCTTCAGTAGAAA 59.236 34.615 0.00 0.00 32.35 2.52
27 28 7.281324 TCGAACAATGTTTCCTTCAGTAGAAAA 59.719 33.333 0.00 0.00 33.98 2.29
28 29 7.376072 CGAACAATGTTTCCTTCAGTAGAAAAC 59.624 37.037 0.00 0.00 33.98 2.43
29 30 7.881775 ACAATGTTTCCTTCAGTAGAAAACT 57.118 32.000 0.00 0.00 39.81 2.66
30 31 7.931275 ACAATGTTTCCTTCAGTAGAAAACTC 58.069 34.615 0.00 0.00 35.76 3.01
31 32 6.787085 ATGTTTCCTTCAGTAGAAAACTCG 57.213 37.500 0.00 0.00 35.76 4.18
32 33 5.909477 TGTTTCCTTCAGTAGAAAACTCGA 58.091 37.500 0.00 0.00 35.76 4.04
33 34 5.751990 TGTTTCCTTCAGTAGAAAACTCGAC 59.248 40.000 0.00 0.00 35.76 4.20
34 35 5.786264 TTCCTTCAGTAGAAAACTCGACT 57.214 39.130 0.00 0.00 35.76 4.18
35 36 5.786264 TCCTTCAGTAGAAAACTCGACTT 57.214 39.130 0.00 0.00 35.76 3.01
36 37 5.770417 TCCTTCAGTAGAAAACTCGACTTC 58.230 41.667 0.00 0.00 35.76 3.01
37 38 5.535406 TCCTTCAGTAGAAAACTCGACTTCT 59.465 40.000 5.32 5.32 35.76 2.85
38 39 5.631512 CCTTCAGTAGAAAACTCGACTTCTG 59.368 44.000 9.05 5.46 35.76 3.02
39 40 5.122512 TCAGTAGAAAACTCGACTTCTGG 57.877 43.478 9.05 1.77 35.76 3.86
40 41 4.825634 TCAGTAGAAAACTCGACTTCTGGA 59.174 41.667 9.05 3.48 35.76 3.86
41 42 5.301045 TCAGTAGAAAACTCGACTTCTGGAA 59.699 40.000 9.05 0.00 35.76 3.53
42 43 5.983720 CAGTAGAAAACTCGACTTCTGGAAA 59.016 40.000 9.05 0.00 35.76 3.13
43 44 5.984323 AGTAGAAAACTCGACTTCTGGAAAC 59.016 40.000 9.05 1.81 30.33 2.78
44 45 4.127907 AGAAAACTCGACTTCTGGAAACC 58.872 43.478 0.11 0.00 30.67 3.27
45 46 3.840124 AAACTCGACTTCTGGAAACCT 57.160 42.857 0.00 0.00 0.00 3.50
46 47 3.840124 AACTCGACTTCTGGAAACCTT 57.160 42.857 0.00 0.00 0.00 3.50
47 48 3.840124 ACTCGACTTCTGGAAACCTTT 57.160 42.857 0.00 0.00 0.00 3.11
48 49 3.729966 ACTCGACTTCTGGAAACCTTTC 58.270 45.455 0.00 0.00 36.46 2.62
49 50 2.731976 CTCGACTTCTGGAAACCTTTCG 59.268 50.000 0.00 0.00 38.06 3.46
50 51 1.194772 CGACTTCTGGAAACCTTTCGC 59.805 52.381 0.00 0.00 38.06 4.70
51 52 2.218603 GACTTCTGGAAACCTTTCGCA 58.781 47.619 0.00 0.00 38.06 5.10
52 53 2.616842 GACTTCTGGAAACCTTTCGCAA 59.383 45.455 0.00 0.00 38.06 4.85
53 54 2.618709 ACTTCTGGAAACCTTTCGCAAG 59.381 45.455 0.00 0.00 38.06 4.01
54 55 2.341846 TCTGGAAACCTTTCGCAAGT 57.658 45.000 0.00 0.00 38.06 3.16
55 56 2.650322 TCTGGAAACCTTTCGCAAGTT 58.350 42.857 0.00 0.00 38.06 2.66
56 57 2.357637 TCTGGAAACCTTTCGCAAGTTG 59.642 45.455 0.00 0.00 38.06 3.16
57 58 1.407258 TGGAAACCTTTCGCAAGTTGG 59.593 47.619 4.75 0.00 38.06 3.77
58 59 1.269569 GGAAACCTTTCGCAAGTTGGG 60.270 52.381 13.49 13.49 38.06 4.12
59 60 1.679153 GAAACCTTTCGCAAGTTGGGA 59.321 47.619 17.89 17.89 37.56 4.37
60 61 1.995376 AACCTTTCGCAAGTTGGGAT 58.005 45.000 21.76 5.76 39.13 3.85
61 62 2.871096 ACCTTTCGCAAGTTGGGATA 57.129 45.000 21.76 16.30 39.13 2.59
62 63 3.366052 ACCTTTCGCAAGTTGGGATAT 57.634 42.857 21.76 6.68 39.13 1.63
63 64 3.279434 ACCTTTCGCAAGTTGGGATATC 58.721 45.455 21.76 0.00 39.13 1.63
64 65 2.618709 CCTTTCGCAAGTTGGGATATCC 59.381 50.000 21.76 13.87 39.13 2.59
65 66 3.278574 CTTTCGCAAGTTGGGATATCCA 58.721 45.455 23.27 6.92 45.43 3.41
74 75 2.325583 TGGGATATCCAAACTCGTGC 57.674 50.000 23.27 3.17 43.84 5.34
75 76 1.557371 TGGGATATCCAAACTCGTGCA 59.443 47.619 23.27 5.82 43.84 4.57
76 77 2.026729 TGGGATATCCAAACTCGTGCAA 60.027 45.455 23.27 0.00 43.84 4.08
77 78 3.013921 GGGATATCCAAACTCGTGCAAA 58.986 45.455 23.27 0.00 37.91 3.68
78 79 3.442273 GGGATATCCAAACTCGTGCAAAA 59.558 43.478 23.27 0.00 37.91 2.44
79 80 4.412207 GGATATCCAAACTCGTGCAAAAC 58.588 43.478 17.34 0.00 35.64 2.43
80 81 4.083003 GGATATCCAAACTCGTGCAAAACA 60.083 41.667 17.34 0.00 35.64 2.83
81 82 5.393027 GGATATCCAAACTCGTGCAAAACAT 60.393 40.000 17.34 0.00 35.64 2.71
82 83 3.791973 TCCAAACTCGTGCAAAACATT 57.208 38.095 0.00 0.00 0.00 2.71
83 84 3.443037 TCCAAACTCGTGCAAAACATTG 58.557 40.909 0.00 0.00 0.00 2.82
84 85 3.119316 TCCAAACTCGTGCAAAACATTGT 60.119 39.130 0.00 0.00 0.00 2.71
85 86 3.616379 CCAAACTCGTGCAAAACATTGTT 59.384 39.130 0.00 0.00 0.00 2.83
86 87 4.092675 CCAAACTCGTGCAAAACATTGTTT 59.907 37.500 8.97 8.97 32.16 2.83
87 88 5.247340 CAAACTCGTGCAAAACATTGTTTC 58.753 37.500 14.80 4.85 30.71 2.78
88 89 4.103365 ACTCGTGCAAAACATTGTTTCA 57.897 36.364 14.80 7.31 0.00 2.69
89 90 4.681744 ACTCGTGCAAAACATTGTTTCAT 58.318 34.783 14.80 0.00 0.00 2.57
90 91 5.826586 ACTCGTGCAAAACATTGTTTCATA 58.173 33.333 14.80 2.40 0.00 2.15
91 92 6.269315 ACTCGTGCAAAACATTGTTTCATAA 58.731 32.000 14.80 0.00 0.00 1.90
92 93 6.754209 ACTCGTGCAAAACATTGTTTCATAAA 59.246 30.769 14.80 0.45 0.00 1.40
93 94 7.276658 ACTCGTGCAAAACATTGTTTCATAAAA 59.723 29.630 14.80 0.90 0.00 1.52
94 95 7.394872 TCGTGCAAAACATTGTTTCATAAAAC 58.605 30.769 14.80 7.52 44.18 2.43
107 108 7.573867 GTTTCATAAAACATTGTTTTGCACG 57.426 32.000 29.06 17.58 43.52 5.34
108 109 5.896922 TCATAAAACATTGTTTTGCACGG 57.103 34.783 29.06 16.90 0.00 4.94
109 110 5.592054 TCATAAAACATTGTTTTGCACGGA 58.408 33.333 29.06 18.35 0.00 4.69
110 111 5.460419 TCATAAAACATTGTTTTGCACGGAC 59.540 36.000 29.06 0.00 0.00 4.79
111 112 3.518634 AAACATTGTTTTGCACGGACT 57.481 38.095 8.97 0.00 0.00 3.85
112 113 2.490328 ACATTGTTTTGCACGGACTG 57.510 45.000 0.00 0.00 0.00 3.51
113 114 2.020720 ACATTGTTTTGCACGGACTGA 58.979 42.857 0.00 0.00 0.00 3.41
114 115 2.425312 ACATTGTTTTGCACGGACTGAA 59.575 40.909 0.00 0.00 0.00 3.02
115 116 3.119316 ACATTGTTTTGCACGGACTGAAA 60.119 39.130 0.00 0.00 0.00 2.69
116 117 3.791973 TTGTTTTGCACGGACTGAAAT 57.208 38.095 0.00 0.00 0.00 2.17
117 118 3.077229 TGTTTTGCACGGACTGAAATG 57.923 42.857 0.00 0.00 0.00 2.32
118 119 2.425312 TGTTTTGCACGGACTGAAATGT 59.575 40.909 0.00 0.00 0.00 2.71
119 120 2.772568 TTTGCACGGACTGAAATGTG 57.227 45.000 0.00 0.00 35.48 3.21
120 121 1.674359 TTGCACGGACTGAAATGTGT 58.326 45.000 0.00 0.00 34.86 3.72
121 122 1.674359 TGCACGGACTGAAATGTGTT 58.326 45.000 0.00 0.00 34.86 3.32
122 123 2.020720 TGCACGGACTGAAATGTGTTT 58.979 42.857 0.00 0.00 34.86 2.83
123 124 2.223456 TGCACGGACTGAAATGTGTTTG 60.223 45.455 0.00 0.00 34.86 2.93
124 125 2.858260 GCACGGACTGAAATGTGTTTGG 60.858 50.000 0.00 0.00 34.86 3.28
125 126 1.336755 ACGGACTGAAATGTGTTTGGC 59.663 47.619 0.00 0.00 0.00 4.52
126 127 1.335872 CGGACTGAAATGTGTTTGGCC 60.336 52.381 0.00 0.00 0.00 5.36
127 128 1.963515 GGACTGAAATGTGTTTGGCCT 59.036 47.619 3.32 0.00 0.00 5.19
128 129 2.365293 GGACTGAAATGTGTTTGGCCTT 59.635 45.455 3.32 0.00 0.00 4.35
129 130 3.552890 GGACTGAAATGTGTTTGGCCTTC 60.553 47.826 3.32 0.00 0.00 3.46
130 131 3.299503 ACTGAAATGTGTTTGGCCTTCT 58.700 40.909 3.32 0.00 0.00 2.85
131 132 3.706086 ACTGAAATGTGTTTGGCCTTCTT 59.294 39.130 3.32 0.00 0.00 2.52
132 133 4.202151 ACTGAAATGTGTTTGGCCTTCTTC 60.202 41.667 3.32 0.00 0.00 2.87
133 134 3.243367 TGAAATGTGTTTGGCCTTCTTCG 60.243 43.478 3.32 0.00 0.00 3.79
134 135 2.270352 ATGTGTTTGGCCTTCTTCGA 57.730 45.000 3.32 0.00 0.00 3.71
135 136 2.270352 TGTGTTTGGCCTTCTTCGAT 57.730 45.000 3.32 0.00 0.00 3.59
136 137 3.410631 TGTGTTTGGCCTTCTTCGATA 57.589 42.857 3.32 0.00 0.00 2.92
137 138 3.950397 TGTGTTTGGCCTTCTTCGATAT 58.050 40.909 3.32 0.00 0.00 1.63
138 139 4.331968 TGTGTTTGGCCTTCTTCGATATT 58.668 39.130 3.32 0.00 0.00 1.28
139 140 4.155826 TGTGTTTGGCCTTCTTCGATATTG 59.844 41.667 3.32 0.00 0.00 1.90
140 141 3.128589 TGTTTGGCCTTCTTCGATATTGC 59.871 43.478 3.32 0.00 0.00 3.56
141 142 2.708216 TGGCCTTCTTCGATATTGCA 57.292 45.000 3.32 0.00 0.00 4.08
142 143 2.288666 TGGCCTTCTTCGATATTGCAC 58.711 47.619 3.32 0.00 0.00 4.57
143 144 1.604278 GGCCTTCTTCGATATTGCACC 59.396 52.381 0.00 0.00 0.00 5.01
144 145 2.565841 GCCTTCTTCGATATTGCACCT 58.434 47.619 0.00 0.00 0.00 4.00
145 146 2.289002 GCCTTCTTCGATATTGCACCTG 59.711 50.000 0.00 0.00 0.00 4.00
146 147 3.797039 CCTTCTTCGATATTGCACCTGA 58.203 45.455 0.00 0.00 0.00 3.86
147 148 3.806521 CCTTCTTCGATATTGCACCTGAG 59.193 47.826 0.00 0.00 0.00 3.35
148 149 4.437239 CTTCTTCGATATTGCACCTGAGT 58.563 43.478 0.00 0.00 0.00 3.41
149 150 4.471904 TCTTCGATATTGCACCTGAGTT 57.528 40.909 0.00 0.00 0.00 3.01
150 151 4.433615 TCTTCGATATTGCACCTGAGTTC 58.566 43.478 0.00 0.00 0.00 3.01
151 152 3.885724 TCGATATTGCACCTGAGTTCA 57.114 42.857 0.00 0.00 0.00 3.18
152 153 4.200838 TCGATATTGCACCTGAGTTCAA 57.799 40.909 0.00 0.00 33.59 2.69
153 154 3.932710 TCGATATTGCACCTGAGTTCAAC 59.067 43.478 0.00 0.00 31.81 3.18
154 155 3.063997 CGATATTGCACCTGAGTTCAACC 59.936 47.826 0.00 0.00 31.81 3.77
155 156 2.363306 ATTGCACCTGAGTTCAACCA 57.637 45.000 0.00 0.00 31.81 3.67
156 157 2.136298 TTGCACCTGAGTTCAACCAA 57.864 45.000 0.00 0.00 0.00 3.67
157 158 1.388547 TGCACCTGAGTTCAACCAAC 58.611 50.000 0.00 0.00 34.86 3.77
158 159 1.340502 TGCACCTGAGTTCAACCAACA 60.341 47.619 0.00 0.00 37.48 3.33
159 160 1.748493 GCACCTGAGTTCAACCAACAA 59.252 47.619 0.00 0.00 37.48 2.83
160 161 2.479560 GCACCTGAGTTCAACCAACAAC 60.480 50.000 0.00 0.00 37.48 3.32
161 162 2.752354 CACCTGAGTTCAACCAACAACA 59.248 45.455 0.00 0.00 37.48 3.33
162 163 3.192422 CACCTGAGTTCAACCAACAACAA 59.808 43.478 0.00 0.00 37.48 2.83
163 164 3.829601 ACCTGAGTTCAACCAACAACAAA 59.170 39.130 0.00 0.00 37.48 2.83
164 165 4.082245 ACCTGAGTTCAACCAACAACAAAG 60.082 41.667 0.00 0.00 37.48 2.77
165 166 4.423732 CTGAGTTCAACCAACAACAAAGG 58.576 43.478 0.00 0.00 37.48 3.11
166 167 4.082845 TGAGTTCAACCAACAACAAAGGA 58.917 39.130 0.00 0.00 37.48 3.36
167 168 4.157656 TGAGTTCAACCAACAACAAAGGAG 59.842 41.667 0.00 0.00 37.48 3.69
168 169 4.340617 AGTTCAACCAACAACAAAGGAGA 58.659 39.130 0.00 0.00 37.48 3.71
169 170 4.956075 AGTTCAACCAACAACAAAGGAGAT 59.044 37.500 0.00 0.00 37.48 2.75
170 171 4.916983 TCAACCAACAACAAAGGAGATG 57.083 40.909 0.00 0.00 0.00 2.90
171 172 4.531854 TCAACCAACAACAAAGGAGATGA 58.468 39.130 0.00 0.00 0.00 2.92
172 173 4.952957 TCAACCAACAACAAAGGAGATGAA 59.047 37.500 0.00 0.00 0.00 2.57
173 174 5.420421 TCAACCAACAACAAAGGAGATGAAA 59.580 36.000 0.00 0.00 0.00 2.69
174 175 5.520376 ACCAACAACAAAGGAGATGAAAG 57.480 39.130 0.00 0.00 0.00 2.62
175 176 4.956075 ACCAACAACAAAGGAGATGAAAGT 59.044 37.500 0.00 0.00 0.00 2.66
176 177 5.163519 ACCAACAACAAAGGAGATGAAAGTG 60.164 40.000 0.00 0.00 0.00 3.16
177 178 4.574599 ACAACAAAGGAGATGAAAGTGC 57.425 40.909 0.00 0.00 0.00 4.40
178 179 3.953612 ACAACAAAGGAGATGAAAGTGCA 59.046 39.130 0.00 0.00 0.00 4.57
179 180 4.037208 ACAACAAAGGAGATGAAAGTGCAG 59.963 41.667 0.00 0.00 0.00 4.41
180 181 2.555757 ACAAAGGAGATGAAAGTGCAGC 59.444 45.455 0.00 0.00 0.00 5.25
181 182 1.831580 AAGGAGATGAAAGTGCAGCC 58.168 50.000 0.00 0.00 0.00 4.85
182 183 0.694771 AGGAGATGAAAGTGCAGCCA 59.305 50.000 0.00 0.00 0.00 4.75
183 184 1.284198 AGGAGATGAAAGTGCAGCCAT 59.716 47.619 0.00 0.00 0.00 4.40
184 185 1.404391 GGAGATGAAAGTGCAGCCATG 59.596 52.381 0.00 0.00 0.00 3.66
185 186 2.089980 GAGATGAAAGTGCAGCCATGT 58.910 47.619 0.00 0.00 0.00 3.21
186 187 1.816835 AGATGAAAGTGCAGCCATGTG 59.183 47.619 0.00 0.00 0.00 3.21
187 188 1.542915 GATGAAAGTGCAGCCATGTGT 59.457 47.619 0.00 0.00 0.00 3.72
188 189 1.401761 TGAAAGTGCAGCCATGTGTT 58.598 45.000 0.00 0.00 0.00 3.32
189 190 1.337703 TGAAAGTGCAGCCATGTGTTC 59.662 47.619 0.00 0.00 0.00 3.18
190 191 1.337703 GAAAGTGCAGCCATGTGTTCA 59.662 47.619 0.00 0.00 0.00 3.18
191 192 1.401761 AAGTGCAGCCATGTGTTCAA 58.598 45.000 0.00 0.00 0.00 2.69
192 193 0.956633 AGTGCAGCCATGTGTTCAAG 59.043 50.000 0.00 0.00 0.00 3.02
193 194 0.953727 GTGCAGCCATGTGTTCAAGA 59.046 50.000 0.00 0.00 0.00 3.02
194 195 1.542915 GTGCAGCCATGTGTTCAAGAT 59.457 47.619 0.00 0.00 0.00 2.40
195 196 2.029649 GTGCAGCCATGTGTTCAAGATT 60.030 45.455 0.00 0.00 0.00 2.40
196 197 3.191162 GTGCAGCCATGTGTTCAAGATTA 59.809 43.478 0.00 0.00 0.00 1.75
197 198 4.018490 TGCAGCCATGTGTTCAAGATTAT 58.982 39.130 0.00 0.00 0.00 1.28
198 199 5.066375 GTGCAGCCATGTGTTCAAGATTATA 59.934 40.000 0.00 0.00 0.00 0.98
199 200 5.297527 TGCAGCCATGTGTTCAAGATTATAG 59.702 40.000 0.00 0.00 0.00 1.31
200 201 5.297776 GCAGCCATGTGTTCAAGATTATAGT 59.702 40.000 0.00 0.00 0.00 2.12
201 202 6.483307 GCAGCCATGTGTTCAAGATTATAGTA 59.517 38.462 0.00 0.00 0.00 1.82
202 203 7.173907 GCAGCCATGTGTTCAAGATTATAGTAT 59.826 37.037 0.00 0.00 0.00 2.12
203 204 9.710900 CAGCCATGTGTTCAAGATTATAGTATA 57.289 33.333 0.00 0.00 0.00 1.47
226 227 6.541111 AAACTTAAGTTAGCGTTCTCTTGG 57.459 37.500 20.83 0.00 37.25 3.61
227 228 3.995048 ACTTAAGTTAGCGTTCTCTTGGC 59.005 43.478 1.12 0.00 0.00 4.52
228 229 2.543777 AAGTTAGCGTTCTCTTGGCA 57.456 45.000 0.00 0.00 0.00 4.92
229 230 2.543777 AGTTAGCGTTCTCTTGGCAA 57.456 45.000 0.00 0.00 0.00 4.52
230 231 3.059352 AGTTAGCGTTCTCTTGGCAAT 57.941 42.857 0.00 0.00 0.00 3.56
231 232 2.744202 AGTTAGCGTTCTCTTGGCAATG 59.256 45.455 0.00 0.00 0.00 2.82
232 233 2.472695 TAGCGTTCTCTTGGCAATGT 57.527 45.000 0.00 0.00 0.00 2.71
233 234 0.877071 AGCGTTCTCTTGGCAATGTG 59.123 50.000 0.00 0.00 0.00 3.21
234 235 0.593128 GCGTTCTCTTGGCAATGTGT 59.407 50.000 0.00 0.00 0.00 3.72
235 236 1.001378 GCGTTCTCTTGGCAATGTGTT 60.001 47.619 0.00 0.00 0.00 3.32
236 237 2.225491 GCGTTCTCTTGGCAATGTGTTA 59.775 45.455 0.00 0.00 0.00 2.41
237 238 3.667960 GCGTTCTCTTGGCAATGTGTTAG 60.668 47.826 0.00 0.00 0.00 2.34
238 239 3.498397 CGTTCTCTTGGCAATGTGTTAGT 59.502 43.478 0.00 0.00 0.00 2.24
239 240 4.024048 CGTTCTCTTGGCAATGTGTTAGTT 60.024 41.667 0.00 0.00 0.00 2.24
240 241 5.505654 CGTTCTCTTGGCAATGTGTTAGTTT 60.506 40.000 0.00 0.00 0.00 2.66
241 242 5.437289 TCTCTTGGCAATGTGTTAGTTTG 57.563 39.130 0.00 0.00 0.00 2.93
242 243 5.129634 TCTCTTGGCAATGTGTTAGTTTGA 58.870 37.500 0.00 0.00 0.00 2.69
243 244 5.008613 TCTCTTGGCAATGTGTTAGTTTGAC 59.991 40.000 0.00 0.00 0.00 3.18
244 245 4.642437 TCTTGGCAATGTGTTAGTTTGACA 59.358 37.500 0.00 0.00 36.62 3.58
245 246 4.300189 TGGCAATGTGTTAGTTTGACAC 57.700 40.909 0.69 0.69 45.80 3.67
262 263 9.436957 AGTTTGACACGAAATATTATGACTTCT 57.563 29.630 0.00 0.00 0.00 2.85
263 264 9.690434 GTTTGACACGAAATATTATGACTTCTC 57.310 33.333 0.00 0.00 0.00 2.87
264 265 8.420374 TTGACACGAAATATTATGACTTCTCC 57.580 34.615 0.00 0.00 0.00 3.71
265 266 7.782049 TGACACGAAATATTATGACTTCTCCT 58.218 34.615 0.00 0.00 0.00 3.69
266 267 8.258007 TGACACGAAATATTATGACTTCTCCTT 58.742 33.333 0.00 0.00 0.00 3.36
267 268 9.099454 GACACGAAATATTATGACTTCTCCTTT 57.901 33.333 0.00 0.00 0.00 3.11
268 269 8.883731 ACACGAAATATTATGACTTCTCCTTTG 58.116 33.333 0.00 0.00 0.00 2.77
269 270 9.098355 CACGAAATATTATGACTTCTCCTTTGA 57.902 33.333 0.00 0.00 0.00 2.69
270 271 9.838339 ACGAAATATTATGACTTCTCCTTTGAT 57.162 29.630 0.00 0.00 0.00 2.57
274 275 9.566432 AATATTATGACTTCTCCTTTGATGACC 57.434 33.333 0.00 0.00 0.00 4.02
275 276 4.916041 ATGACTTCTCCTTTGATGACCA 57.084 40.909 0.00 0.00 0.00 4.02
276 277 4.705110 TGACTTCTCCTTTGATGACCAA 57.295 40.909 0.00 0.00 0.00 3.67
277 278 5.246981 TGACTTCTCCTTTGATGACCAAT 57.753 39.130 0.00 0.00 34.23 3.16
278 279 5.005740 TGACTTCTCCTTTGATGACCAATG 58.994 41.667 0.00 0.00 34.23 2.82
279 280 5.221904 TGACTTCTCCTTTGATGACCAATGA 60.222 40.000 0.00 0.00 34.23 2.57
280 281 5.824421 ACTTCTCCTTTGATGACCAATGAT 58.176 37.500 0.00 0.00 34.23 2.45
281 282 6.962182 ACTTCTCCTTTGATGACCAATGATA 58.038 36.000 0.00 0.00 34.23 2.15
282 283 7.580910 ACTTCTCCTTTGATGACCAATGATAT 58.419 34.615 0.00 0.00 34.23 1.63
283 284 8.717717 ACTTCTCCTTTGATGACCAATGATATA 58.282 33.333 0.00 0.00 34.23 0.86
284 285 9.736414 CTTCTCCTTTGATGACCAATGATATAT 57.264 33.333 0.00 0.00 34.23 0.86
296 297 9.859152 TGACCAATGATATATAAATGGTTGTCA 57.141 29.630 10.70 2.95 41.04 3.58
303 304 9.725019 TGATATATAAATGGTTGTCATGTCCTC 57.275 33.333 0.00 0.00 35.99 3.71
304 305 9.725019 GATATATAAATGGTTGTCATGTCCTCA 57.275 33.333 0.00 0.00 35.99 3.86
315 316 4.202451 TGTCATGTCCTCATCAAGACCAAA 60.202 41.667 0.00 0.00 31.76 3.28
421 422 1.402852 CGTGGTTCGAGAAGATGCAGA 60.403 52.381 0.00 0.00 42.86 4.26
429 430 2.736719 CGAGAAGATGCAGACCGACATT 60.737 50.000 0.00 0.00 0.00 2.71
433 434 1.089920 GATGCAGACCGACATTGCTT 58.910 50.000 0.00 0.00 38.60 3.91
475 477 3.567797 GCGGCAAGCGTCATCCTC 61.568 66.667 0.00 0.00 35.41 3.71
488 490 3.531538 GTCATCCTCTTTTGTATGCCGA 58.468 45.455 0.00 0.00 0.00 5.54
492 494 3.745799 TCCTCTTTTGTATGCCGACAAA 58.254 40.909 8.70 8.70 45.29 2.83
497 499 4.277174 TCTTTTGTATGCCGACAAATGTGT 59.723 37.500 18.14 0.00 46.00 3.72
520 524 1.743431 GCATGACCACATCCGTGATGA 60.743 52.381 17.37 0.00 46.80 2.92
524 528 1.133598 GACCACATCCGTGATGACGTA 59.866 52.381 17.37 0.00 46.80 3.57
705 722 2.049526 CCGCGGGCCTTTTTCAAC 60.050 61.111 20.10 0.00 0.00 3.18
744 761 1.561769 ATGGATCGGTGAGTTGGGCA 61.562 55.000 0.00 0.00 0.00 5.36
763 781 2.490903 GCACACTGCAGATCCAAATCTT 59.509 45.455 23.35 0.00 44.26 2.40
827 856 2.744709 CGCCGTCCGTTTTGGGAT 60.745 61.111 0.00 0.00 38.61 3.85
872 901 6.262601 ACAACTTTGTTAAACATGACGAAGG 58.737 36.000 13.86 3.50 40.17 3.46
873 902 6.127842 ACAACTTTGTTAAACATGACGAAGGT 60.128 34.615 13.86 6.98 40.17 3.50
874 903 5.816919 ACTTTGTTAAACATGACGAAGGTG 58.183 37.500 13.86 0.00 40.17 4.00
875 904 4.822036 TTGTTAAACATGACGAAGGTGG 57.178 40.909 0.00 0.00 0.00 4.61
876 905 3.142951 TGTTAAACATGACGAAGGTGGG 58.857 45.455 0.00 0.00 0.00 4.61
877 906 3.143728 GTTAAACATGACGAAGGTGGGT 58.856 45.455 0.00 0.00 0.00 4.51
878 907 2.358322 AAACATGACGAAGGTGGGTT 57.642 45.000 0.00 0.00 0.00 4.11
879 908 3.495434 AAACATGACGAAGGTGGGTTA 57.505 42.857 0.00 0.00 0.00 2.85
880 909 3.495434 AACATGACGAAGGTGGGTTAA 57.505 42.857 0.00 0.00 0.00 2.01
881 910 3.495434 ACATGACGAAGGTGGGTTAAA 57.505 42.857 0.00 0.00 0.00 1.52
882 911 3.822940 ACATGACGAAGGTGGGTTAAAA 58.177 40.909 0.00 0.00 0.00 1.52
883 912 4.403734 ACATGACGAAGGTGGGTTAAAAT 58.596 39.130 0.00 0.00 0.00 1.82
884 913 4.457949 ACATGACGAAGGTGGGTTAAAATC 59.542 41.667 0.00 0.00 0.00 2.17
885 914 4.088056 TGACGAAGGTGGGTTAAAATCA 57.912 40.909 0.00 0.00 0.00 2.57
886 915 4.462133 TGACGAAGGTGGGTTAAAATCAA 58.538 39.130 0.00 0.00 0.00 2.57
887 916 5.074115 TGACGAAGGTGGGTTAAAATCAAT 58.926 37.500 0.00 0.00 0.00 2.57
888 917 5.536916 TGACGAAGGTGGGTTAAAATCAATT 59.463 36.000 0.00 0.00 0.00 2.32
889 918 6.041069 TGACGAAGGTGGGTTAAAATCAATTT 59.959 34.615 0.00 0.00 34.92 1.82
890 919 6.822442 ACGAAGGTGGGTTAAAATCAATTTT 58.178 32.000 6.04 6.04 42.21 1.82
891 920 6.926826 ACGAAGGTGGGTTAAAATCAATTTTC 59.073 34.615 4.07 0.00 40.24 2.29
892 921 6.367695 CGAAGGTGGGTTAAAATCAATTTTCC 59.632 38.462 4.07 1.62 40.24 3.13
893 922 6.121776 AGGTGGGTTAAAATCAATTTTCCC 57.878 37.500 14.02 14.02 40.24 3.97
918 947 2.781681 AATCGGGGGTTCTGTTGTAG 57.218 50.000 0.00 0.00 0.00 2.74
922 951 1.278127 CGGGGGTTCTGTTGTAGATGT 59.722 52.381 0.00 0.00 34.80 3.06
952 981 1.957089 CTACTCCGAATCTCGCATCG 58.043 55.000 0.00 0.00 38.82 3.84
1585 1617 2.903357 GCTGGGAGAAGATCGCCA 59.097 61.111 2.60 0.00 38.15 5.69
1896 1928 0.036388 GCATGAAGAGGGTCACCGAA 60.036 55.000 0.00 0.00 43.47 4.30
2179 2211 7.466746 AAACTATAATGTGTTGGCTGTCAAT 57.533 32.000 0.00 0.00 37.73 2.57
2181 2213 6.855836 ACTATAATGTGTTGGCTGTCAATTG 58.144 36.000 0.00 0.00 37.73 2.32
2257 2313 2.238521 TCCCCAAGAATGCAAACTGAC 58.761 47.619 0.00 0.00 0.00 3.51
2364 2420 2.829741 TTTGGTTTATGTTGCCTGCC 57.170 45.000 0.00 0.00 0.00 4.85
2440 2496 7.575414 TTATGTGACAATTACCACAAACACT 57.425 32.000 13.75 3.20 45.08 3.55
2463 2519 8.997323 CACTCCATTCCTGATCACTATAAAATC 58.003 37.037 0.00 0.00 0.00 2.17
2716 2772 6.764560 ACAAATGCATTTTCTTCTTCTTTGCT 59.235 30.769 21.95 0.00 0.00 3.91
2722 2778 2.751166 TCTTCTTCTTTGCTCCGGAG 57.249 50.000 27.83 27.83 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.813296 ACTGAAGGAAACATTGTTCGAC 57.187 40.909 1.83 0.00 0.00 4.20
1 2 5.849510 TCTACTGAAGGAAACATTGTTCGA 58.150 37.500 1.83 0.00 0.00 3.71
11 12 6.158023 AGTCGAGTTTTCTACTGAAGGAAA 57.842 37.500 0.00 0.00 37.17 3.13
12 13 5.786264 AGTCGAGTTTTCTACTGAAGGAA 57.214 39.130 0.00 0.00 37.17 3.36
13 14 5.535406 AGAAGTCGAGTTTTCTACTGAAGGA 59.465 40.000 6.99 0.00 37.17 3.36
14 15 5.631512 CAGAAGTCGAGTTTTCTACTGAAGG 59.368 44.000 6.99 0.00 37.17 3.46
15 16 5.631512 CCAGAAGTCGAGTTTTCTACTGAAG 59.368 44.000 16.26 2.08 37.17 3.02
16 17 5.301045 TCCAGAAGTCGAGTTTTCTACTGAA 59.699 40.000 16.26 0.00 37.17 3.02
17 18 4.825634 TCCAGAAGTCGAGTTTTCTACTGA 59.174 41.667 16.26 7.66 37.17 3.41
18 19 5.122512 TCCAGAAGTCGAGTTTTCTACTG 57.877 43.478 6.99 9.00 37.17 2.74
19 20 5.786264 TTCCAGAAGTCGAGTTTTCTACT 57.214 39.130 6.99 0.00 40.71 2.57
20 21 5.177142 GGTTTCCAGAAGTCGAGTTTTCTAC 59.823 44.000 6.99 2.49 32.62 2.59
21 22 5.070047 AGGTTTCCAGAAGTCGAGTTTTCTA 59.930 40.000 6.99 0.00 32.62 2.10
22 23 4.127907 GGTTTCCAGAAGTCGAGTTTTCT 58.872 43.478 6.99 4.06 34.09 2.52
23 24 4.127907 AGGTTTCCAGAAGTCGAGTTTTC 58.872 43.478 6.99 1.66 0.00 2.29
24 25 4.152284 AGGTTTCCAGAAGTCGAGTTTT 57.848 40.909 6.99 0.00 0.00 2.43
25 26 3.840124 AGGTTTCCAGAAGTCGAGTTT 57.160 42.857 6.99 0.00 0.00 2.66
26 27 3.840124 AAGGTTTCCAGAAGTCGAGTT 57.160 42.857 4.86 4.86 0.00 3.01
27 28 3.729966 GAAAGGTTTCCAGAAGTCGAGT 58.270 45.455 0.00 0.00 0.00 4.18
28 29 2.731976 CGAAAGGTTTCCAGAAGTCGAG 59.268 50.000 0.00 0.00 33.68 4.04
29 30 2.750948 CGAAAGGTTTCCAGAAGTCGA 58.249 47.619 0.00 0.00 33.68 4.20
30 31 1.194772 GCGAAAGGTTTCCAGAAGTCG 59.805 52.381 0.00 0.00 33.68 4.18
31 32 2.218603 TGCGAAAGGTTTCCAGAAGTC 58.781 47.619 0.00 0.00 33.68 3.01
32 33 2.341846 TGCGAAAGGTTTCCAGAAGT 57.658 45.000 0.00 0.00 33.68 3.01
33 34 2.618709 ACTTGCGAAAGGTTTCCAGAAG 59.381 45.455 8.33 0.63 33.68 2.85
34 35 2.650322 ACTTGCGAAAGGTTTCCAGAA 58.350 42.857 8.33 0.00 33.68 3.02
35 36 2.341846 ACTTGCGAAAGGTTTCCAGA 57.658 45.000 8.33 0.00 33.68 3.86
36 37 2.543653 CCAACTTGCGAAAGGTTTCCAG 60.544 50.000 8.33 0.00 33.68 3.86
37 38 1.407258 CCAACTTGCGAAAGGTTTCCA 59.593 47.619 8.33 0.00 33.68 3.53
38 39 1.269569 CCCAACTTGCGAAAGGTTTCC 60.270 52.381 8.33 0.00 33.68 3.13
39 40 1.679153 TCCCAACTTGCGAAAGGTTTC 59.321 47.619 8.33 0.00 0.00 2.78
40 41 1.770294 TCCCAACTTGCGAAAGGTTT 58.230 45.000 8.33 0.00 0.00 3.27
41 42 1.995376 ATCCCAACTTGCGAAAGGTT 58.005 45.000 8.33 0.00 0.00 3.50
42 43 2.871096 TATCCCAACTTGCGAAAGGT 57.129 45.000 8.33 0.00 0.00 3.50
43 44 2.618709 GGATATCCCAACTTGCGAAAGG 59.381 50.000 11.02 0.00 34.14 3.11
44 45 3.278574 TGGATATCCCAACTTGCGAAAG 58.721 45.455 19.34 0.10 43.29 2.62
45 46 3.358111 TGGATATCCCAACTTGCGAAA 57.642 42.857 19.34 0.00 43.29 3.46
55 56 1.557371 TGCACGAGTTTGGATATCCCA 59.443 47.619 19.34 5.22 44.93 4.37
56 57 2.325583 TGCACGAGTTTGGATATCCC 57.674 50.000 19.34 3.83 34.29 3.85
57 58 4.083003 TGTTTTGCACGAGTTTGGATATCC 60.083 41.667 15.39 15.39 0.00 2.59
58 59 5.041951 TGTTTTGCACGAGTTTGGATATC 57.958 39.130 0.00 0.00 0.00 1.63
59 60 5.643379 ATGTTTTGCACGAGTTTGGATAT 57.357 34.783 0.00 0.00 0.00 1.63
60 61 5.218885 CAATGTTTTGCACGAGTTTGGATA 58.781 37.500 0.00 0.00 0.00 2.59
61 62 4.050553 CAATGTTTTGCACGAGTTTGGAT 58.949 39.130 0.00 0.00 0.00 3.41
62 63 3.119316 ACAATGTTTTGCACGAGTTTGGA 60.119 39.130 0.00 0.00 36.22 3.53
63 64 3.186119 ACAATGTTTTGCACGAGTTTGG 58.814 40.909 0.00 0.00 36.22 3.28
64 65 4.838665 AACAATGTTTTGCACGAGTTTG 57.161 36.364 0.00 0.00 36.22 2.93
65 66 4.926238 TGAAACAATGTTTTGCACGAGTTT 59.074 33.333 13.00 0.00 36.22 2.66
66 67 4.489810 TGAAACAATGTTTTGCACGAGTT 58.510 34.783 13.00 0.00 36.22 3.01
67 68 4.103365 TGAAACAATGTTTTGCACGAGT 57.897 36.364 13.00 0.00 36.22 4.18
68 69 6.746104 TTATGAAACAATGTTTTGCACGAG 57.254 33.333 13.00 0.00 36.22 4.18
69 70 7.394872 GTTTTATGAAACAATGTTTTGCACGA 58.605 30.769 13.00 0.00 43.65 4.35
70 71 7.573867 GTTTTATGAAACAATGTTTTGCACG 57.426 32.000 13.00 0.00 43.65 5.34
83 84 6.626882 CCGTGCAAAACAATGTTTTATGAAAC 59.373 34.615 21.78 14.32 44.29 2.78
84 85 6.535150 TCCGTGCAAAACAATGTTTTATGAAA 59.465 30.769 21.78 5.89 0.00 2.69
85 86 6.019479 GTCCGTGCAAAACAATGTTTTATGAA 60.019 34.615 21.78 5.52 0.00 2.57
86 87 5.460419 GTCCGTGCAAAACAATGTTTTATGA 59.540 36.000 21.78 11.89 0.00 2.15
87 88 5.461737 AGTCCGTGCAAAACAATGTTTTATG 59.538 36.000 21.78 13.69 0.00 1.90
88 89 5.461737 CAGTCCGTGCAAAACAATGTTTTAT 59.538 36.000 21.78 0.47 0.00 1.40
89 90 4.800993 CAGTCCGTGCAAAACAATGTTTTA 59.199 37.500 21.78 6.85 0.00 1.52
90 91 3.616379 CAGTCCGTGCAAAACAATGTTTT 59.384 39.130 17.39 17.39 0.00 2.43
91 92 3.119316 TCAGTCCGTGCAAAACAATGTTT 60.119 39.130 5.41 5.41 0.00 2.83
92 93 2.425312 TCAGTCCGTGCAAAACAATGTT 59.575 40.909 0.00 0.00 0.00 2.71
93 94 2.020720 TCAGTCCGTGCAAAACAATGT 58.979 42.857 0.00 0.00 0.00 2.71
94 95 2.772568 TCAGTCCGTGCAAAACAATG 57.227 45.000 0.00 0.00 0.00 2.82
95 96 3.791973 TTTCAGTCCGTGCAAAACAAT 57.208 38.095 0.00 0.00 0.00 2.71
96 97 3.119316 ACATTTCAGTCCGTGCAAAACAA 60.119 39.130 0.00 0.00 0.00 2.83
97 98 2.425312 ACATTTCAGTCCGTGCAAAACA 59.575 40.909 0.00 0.00 0.00 2.83
98 99 2.788786 CACATTTCAGTCCGTGCAAAAC 59.211 45.455 0.00 0.00 0.00 2.43
99 100 2.425312 ACACATTTCAGTCCGTGCAAAA 59.575 40.909 0.00 0.00 32.53 2.44
100 101 2.020720 ACACATTTCAGTCCGTGCAAA 58.979 42.857 0.00 0.00 32.53 3.68
101 102 1.674359 ACACATTTCAGTCCGTGCAA 58.326 45.000 0.00 0.00 32.53 4.08
102 103 1.674359 AACACATTTCAGTCCGTGCA 58.326 45.000 0.00 0.00 32.53 4.57
103 104 2.384382 CAAACACATTTCAGTCCGTGC 58.616 47.619 0.00 0.00 32.53 5.34
104 105 2.858260 GCCAAACACATTTCAGTCCGTG 60.858 50.000 0.00 0.00 35.48 4.94
105 106 1.336755 GCCAAACACATTTCAGTCCGT 59.663 47.619 0.00 0.00 0.00 4.69
106 107 1.335872 GGCCAAACACATTTCAGTCCG 60.336 52.381 0.00 0.00 0.00 4.79
107 108 1.963515 AGGCCAAACACATTTCAGTCC 59.036 47.619 5.01 0.00 0.00 3.85
108 109 3.319122 AGAAGGCCAAACACATTTCAGTC 59.681 43.478 5.01 0.00 0.00 3.51
109 110 3.299503 AGAAGGCCAAACACATTTCAGT 58.700 40.909 5.01 0.00 0.00 3.41
110 111 4.301628 GAAGAAGGCCAAACACATTTCAG 58.698 43.478 5.01 0.00 0.00 3.02
111 112 3.243367 CGAAGAAGGCCAAACACATTTCA 60.243 43.478 5.01 0.00 0.00 2.69
112 113 3.004315 TCGAAGAAGGCCAAACACATTTC 59.996 43.478 5.01 0.00 0.00 2.17
113 114 2.955660 TCGAAGAAGGCCAAACACATTT 59.044 40.909 5.01 0.00 0.00 2.32
114 115 2.582052 TCGAAGAAGGCCAAACACATT 58.418 42.857 5.01 0.00 0.00 2.71
115 116 2.270352 TCGAAGAAGGCCAAACACAT 57.730 45.000 5.01 0.00 0.00 3.21
116 117 2.270352 ATCGAAGAAGGCCAAACACA 57.730 45.000 5.01 0.00 43.58 3.72
117 118 4.662145 CAATATCGAAGAAGGCCAAACAC 58.338 43.478 5.01 0.00 43.58 3.32
118 119 3.128589 GCAATATCGAAGAAGGCCAAACA 59.871 43.478 5.01 0.00 43.58 2.83
119 120 3.128589 TGCAATATCGAAGAAGGCCAAAC 59.871 43.478 5.01 0.00 43.58 2.93
120 121 3.128589 GTGCAATATCGAAGAAGGCCAAA 59.871 43.478 5.01 0.00 43.58 3.28
121 122 2.682856 GTGCAATATCGAAGAAGGCCAA 59.317 45.455 5.01 0.00 43.58 4.52
122 123 2.288666 GTGCAATATCGAAGAAGGCCA 58.711 47.619 5.01 0.00 43.58 5.36
123 124 1.604278 GGTGCAATATCGAAGAAGGCC 59.396 52.381 0.00 0.00 43.58 5.19
124 125 2.289002 CAGGTGCAATATCGAAGAAGGC 59.711 50.000 0.00 0.00 43.58 4.35
125 126 3.797039 TCAGGTGCAATATCGAAGAAGG 58.203 45.455 0.00 0.00 43.58 3.46
126 127 4.437239 ACTCAGGTGCAATATCGAAGAAG 58.563 43.478 0.00 0.00 43.58 2.85
127 128 4.471904 ACTCAGGTGCAATATCGAAGAA 57.528 40.909 0.00 0.00 43.58 2.52
128 129 4.081697 TGAACTCAGGTGCAATATCGAAGA 60.082 41.667 0.00 0.00 45.75 2.87
129 130 4.183865 TGAACTCAGGTGCAATATCGAAG 58.816 43.478 0.00 0.00 0.00 3.79
130 131 4.200838 TGAACTCAGGTGCAATATCGAA 57.799 40.909 0.00 0.00 0.00 3.71
131 132 3.885724 TGAACTCAGGTGCAATATCGA 57.114 42.857 0.00 0.00 0.00 3.59
132 133 3.063997 GGTTGAACTCAGGTGCAATATCG 59.936 47.826 0.00 0.00 42.33 2.92
133 134 4.009675 TGGTTGAACTCAGGTGCAATATC 58.990 43.478 0.00 0.00 42.33 1.63
134 135 4.032960 TGGTTGAACTCAGGTGCAATAT 57.967 40.909 0.00 0.00 42.33 1.28
135 136 3.500448 TGGTTGAACTCAGGTGCAATA 57.500 42.857 0.00 0.00 42.33 1.90
136 137 2.362077 GTTGGTTGAACTCAGGTGCAAT 59.638 45.455 0.00 0.00 42.33 3.56
137 138 1.748493 GTTGGTTGAACTCAGGTGCAA 59.252 47.619 0.00 0.00 38.56 4.08
138 139 1.340502 TGTTGGTTGAACTCAGGTGCA 60.341 47.619 0.00 0.00 35.37 4.57
139 140 1.388547 TGTTGGTTGAACTCAGGTGC 58.611 50.000 0.00 0.00 35.37 5.01
140 141 2.752354 TGTTGTTGGTTGAACTCAGGTG 59.248 45.455 0.00 0.00 35.37 4.00
141 142 3.080300 TGTTGTTGGTTGAACTCAGGT 57.920 42.857 0.00 0.00 35.37 4.00
142 143 4.423732 CTTTGTTGTTGGTTGAACTCAGG 58.576 43.478 0.00 0.00 35.37 3.86
143 144 4.157656 TCCTTTGTTGTTGGTTGAACTCAG 59.842 41.667 0.00 0.00 35.37 3.35
144 145 4.082845 TCCTTTGTTGTTGGTTGAACTCA 58.917 39.130 0.00 0.00 35.37 3.41
145 146 4.398044 TCTCCTTTGTTGTTGGTTGAACTC 59.602 41.667 0.00 0.00 35.37 3.01
146 147 4.340617 TCTCCTTTGTTGTTGGTTGAACT 58.659 39.130 0.00 0.00 35.37 3.01
147 148 4.712122 TCTCCTTTGTTGTTGGTTGAAC 57.288 40.909 0.00 0.00 34.84 3.18
148 149 4.952957 TCATCTCCTTTGTTGTTGGTTGAA 59.047 37.500 0.00 0.00 0.00 2.69
149 150 4.531854 TCATCTCCTTTGTTGTTGGTTGA 58.468 39.130 0.00 0.00 0.00 3.18
150 151 4.916983 TCATCTCCTTTGTTGTTGGTTG 57.083 40.909 0.00 0.00 0.00 3.77
151 152 5.422012 ACTTTCATCTCCTTTGTTGTTGGTT 59.578 36.000 0.00 0.00 0.00 3.67
152 153 4.956075 ACTTTCATCTCCTTTGTTGTTGGT 59.044 37.500 0.00 0.00 0.00 3.67
153 154 5.284079 CACTTTCATCTCCTTTGTTGTTGG 58.716 41.667 0.00 0.00 0.00 3.77
154 155 4.741676 GCACTTTCATCTCCTTTGTTGTTG 59.258 41.667 0.00 0.00 0.00 3.33
155 156 4.402155 TGCACTTTCATCTCCTTTGTTGTT 59.598 37.500 0.00 0.00 0.00 2.83
156 157 3.953612 TGCACTTTCATCTCCTTTGTTGT 59.046 39.130 0.00 0.00 0.00 3.32
157 158 4.543692 CTGCACTTTCATCTCCTTTGTTG 58.456 43.478 0.00 0.00 0.00 3.33
158 159 3.005155 GCTGCACTTTCATCTCCTTTGTT 59.995 43.478 0.00 0.00 0.00 2.83
159 160 2.555757 GCTGCACTTTCATCTCCTTTGT 59.444 45.455 0.00 0.00 0.00 2.83
160 161 2.094854 GGCTGCACTTTCATCTCCTTTG 60.095 50.000 0.50 0.00 0.00 2.77
161 162 2.165998 GGCTGCACTTTCATCTCCTTT 58.834 47.619 0.50 0.00 0.00 3.11
162 163 1.074405 TGGCTGCACTTTCATCTCCTT 59.926 47.619 0.50 0.00 0.00 3.36
163 164 0.694771 TGGCTGCACTTTCATCTCCT 59.305 50.000 0.50 0.00 0.00 3.69
164 165 1.404391 CATGGCTGCACTTTCATCTCC 59.596 52.381 0.50 0.00 0.00 3.71
165 166 2.089980 ACATGGCTGCACTTTCATCTC 58.910 47.619 0.50 0.00 0.00 2.75
166 167 1.816835 CACATGGCTGCACTTTCATCT 59.183 47.619 0.50 0.00 0.00 2.90
167 168 1.542915 ACACATGGCTGCACTTTCATC 59.457 47.619 0.50 0.00 0.00 2.92
168 169 1.624336 ACACATGGCTGCACTTTCAT 58.376 45.000 0.50 0.00 0.00 2.57
169 170 1.337703 GAACACATGGCTGCACTTTCA 59.662 47.619 0.50 0.00 0.00 2.69
170 171 1.337703 TGAACACATGGCTGCACTTTC 59.662 47.619 0.50 0.00 0.00 2.62
171 172 1.401761 TGAACACATGGCTGCACTTT 58.598 45.000 0.50 0.00 0.00 2.66
172 173 1.338973 CTTGAACACATGGCTGCACTT 59.661 47.619 0.50 0.00 0.00 3.16
173 174 0.956633 CTTGAACACATGGCTGCACT 59.043 50.000 0.50 0.00 0.00 4.40
174 175 0.953727 TCTTGAACACATGGCTGCAC 59.046 50.000 0.50 0.00 0.00 4.57
175 176 1.913778 ATCTTGAACACATGGCTGCA 58.086 45.000 0.50 0.00 0.00 4.41
176 177 4.644103 ATAATCTTGAACACATGGCTGC 57.356 40.909 0.00 0.00 0.00 5.25
177 178 6.932356 ACTATAATCTTGAACACATGGCTG 57.068 37.500 0.00 0.00 0.00 4.85
200 201 9.362539 CCAAGAGAACGCTAACTTAAGTTTATA 57.637 33.333 25.07 7.59 39.31 0.98
201 202 7.148457 GCCAAGAGAACGCTAACTTAAGTTTAT 60.148 37.037 25.07 5.04 39.31 1.40
202 203 6.146673 GCCAAGAGAACGCTAACTTAAGTTTA 59.853 38.462 25.07 10.82 39.31 2.01
203 204 5.049612 GCCAAGAGAACGCTAACTTAAGTTT 60.050 40.000 25.07 7.67 39.31 2.66
204 205 4.451435 GCCAAGAGAACGCTAACTTAAGTT 59.549 41.667 23.58 23.58 41.73 2.66
205 206 3.995048 GCCAAGAGAACGCTAACTTAAGT 59.005 43.478 1.12 1.12 0.00 2.24
206 207 3.994392 TGCCAAGAGAACGCTAACTTAAG 59.006 43.478 0.00 0.00 0.00 1.85
207 208 3.997762 TGCCAAGAGAACGCTAACTTAA 58.002 40.909 0.00 0.00 0.00 1.85
208 209 3.671008 TGCCAAGAGAACGCTAACTTA 57.329 42.857 0.00 0.00 0.00 2.24
209 210 2.543777 TGCCAAGAGAACGCTAACTT 57.456 45.000 0.00 0.00 0.00 2.66
210 211 2.543777 TTGCCAAGAGAACGCTAACT 57.456 45.000 0.00 0.00 0.00 2.24
211 212 2.484264 ACATTGCCAAGAGAACGCTAAC 59.516 45.455 0.00 0.00 0.00 2.34
212 213 2.483877 CACATTGCCAAGAGAACGCTAA 59.516 45.455 0.00 0.00 0.00 3.09
213 214 2.076100 CACATTGCCAAGAGAACGCTA 58.924 47.619 0.00 0.00 0.00 4.26
214 215 0.877071 CACATTGCCAAGAGAACGCT 59.123 50.000 0.00 0.00 0.00 5.07
215 216 0.593128 ACACATTGCCAAGAGAACGC 59.407 50.000 0.00 0.00 0.00 4.84
216 217 3.498397 ACTAACACATTGCCAAGAGAACG 59.502 43.478 0.00 0.00 0.00 3.95
217 218 5.438761 AACTAACACATTGCCAAGAGAAC 57.561 39.130 0.00 0.00 0.00 3.01
218 219 5.592282 TCAAACTAACACATTGCCAAGAGAA 59.408 36.000 0.00 0.00 0.00 2.87
219 220 5.008613 GTCAAACTAACACATTGCCAAGAGA 59.991 40.000 0.00 0.00 0.00 3.10
220 221 5.215160 GTCAAACTAACACATTGCCAAGAG 58.785 41.667 0.00 0.00 0.00 2.85
221 222 4.642437 TGTCAAACTAACACATTGCCAAGA 59.358 37.500 0.00 0.00 0.00 3.02
222 223 4.739716 GTGTCAAACTAACACATTGCCAAG 59.260 41.667 1.72 0.00 45.05 3.61
223 224 4.677584 GTGTCAAACTAACACATTGCCAA 58.322 39.130 1.72 0.00 45.05 4.52
224 225 3.242903 CGTGTCAAACTAACACATTGCCA 60.243 43.478 7.13 0.00 45.81 4.92
225 226 3.002862 TCGTGTCAAACTAACACATTGCC 59.997 43.478 7.13 0.00 45.81 4.52
226 227 4.203950 TCGTGTCAAACTAACACATTGC 57.796 40.909 7.13 0.00 45.81 3.56
227 228 8.948853 ATATTTCGTGTCAAACTAACACATTG 57.051 30.769 7.13 0.00 45.81 2.82
236 237 9.436957 AGAAGTCATAATATTTCGTGTCAAACT 57.563 29.630 0.00 0.00 0.00 2.66
237 238 9.690434 GAGAAGTCATAATATTTCGTGTCAAAC 57.310 33.333 0.00 0.00 0.00 2.93
238 239 8.879759 GGAGAAGTCATAATATTTCGTGTCAAA 58.120 33.333 0.00 0.00 0.00 2.69
239 240 8.258007 AGGAGAAGTCATAATATTTCGTGTCAA 58.742 33.333 0.00 0.00 0.00 3.18
240 241 7.782049 AGGAGAAGTCATAATATTTCGTGTCA 58.218 34.615 0.00 0.00 0.00 3.58
241 242 8.649973 AAGGAGAAGTCATAATATTTCGTGTC 57.350 34.615 0.00 0.00 0.00 3.67
242 243 8.883731 CAAAGGAGAAGTCATAATATTTCGTGT 58.116 33.333 0.00 0.00 0.00 4.49
243 244 9.098355 TCAAAGGAGAAGTCATAATATTTCGTG 57.902 33.333 0.00 0.00 0.00 4.35
244 245 9.838339 ATCAAAGGAGAAGTCATAATATTTCGT 57.162 29.630 0.00 0.00 0.00 3.85
248 249 9.566432 GGTCATCAAAGGAGAAGTCATAATATT 57.434 33.333 0.00 0.00 0.00 1.28
249 250 8.717717 TGGTCATCAAAGGAGAAGTCATAATAT 58.282 33.333 0.00 0.00 0.00 1.28
250 251 8.089625 TGGTCATCAAAGGAGAAGTCATAATA 57.910 34.615 0.00 0.00 0.00 0.98
251 252 6.962182 TGGTCATCAAAGGAGAAGTCATAAT 58.038 36.000 0.00 0.00 0.00 1.28
252 253 6.373005 TGGTCATCAAAGGAGAAGTCATAA 57.627 37.500 0.00 0.00 0.00 1.90
253 254 6.373005 TTGGTCATCAAAGGAGAAGTCATA 57.627 37.500 0.00 0.00 31.46 2.15
254 255 4.916041 TGGTCATCAAAGGAGAAGTCAT 57.084 40.909 0.00 0.00 0.00 3.06
255 256 4.705110 TTGGTCATCAAAGGAGAAGTCA 57.295 40.909 0.00 0.00 31.46 3.41
256 257 5.248640 TCATTGGTCATCAAAGGAGAAGTC 58.751 41.667 0.00 0.00 39.05 3.01
257 258 5.246981 TCATTGGTCATCAAAGGAGAAGT 57.753 39.130 0.00 0.00 39.05 3.01
258 259 9.736414 ATATATCATTGGTCATCAAAGGAGAAG 57.264 33.333 0.00 0.00 39.05 2.85
270 271 9.859152 TGACAACCATTTATATATCATTGGTCA 57.141 29.630 11.91 5.74 36.49 4.02
277 278 9.725019 GAGGACATGACAACCATTTATATATCA 57.275 33.333 0.00 0.00 31.94 2.15
278 279 9.725019 TGAGGACATGACAACCATTTATATATC 57.275 33.333 0.00 0.00 31.94 1.63
280 281 9.725019 GATGAGGACATGACAACCATTTATATA 57.275 33.333 0.00 0.00 36.82 0.86
281 282 8.219868 TGATGAGGACATGACAACCATTTATAT 58.780 33.333 0.00 0.00 36.82 0.86
282 283 7.572814 TGATGAGGACATGACAACCATTTATA 58.427 34.615 0.00 0.00 36.82 0.98
283 284 6.425735 TGATGAGGACATGACAACCATTTAT 58.574 36.000 0.00 0.00 36.82 1.40
284 285 5.814481 TGATGAGGACATGACAACCATTTA 58.186 37.500 0.00 0.00 36.82 1.40
285 286 4.665451 TGATGAGGACATGACAACCATTT 58.335 39.130 0.00 0.00 36.82 2.32
286 287 4.305539 TGATGAGGACATGACAACCATT 57.694 40.909 0.00 0.00 36.82 3.16
287 288 4.019051 TCTTGATGAGGACATGACAACCAT 60.019 41.667 0.00 0.00 36.82 3.55
288 289 3.327464 TCTTGATGAGGACATGACAACCA 59.673 43.478 0.00 0.00 36.82 3.67
289 290 3.686726 GTCTTGATGAGGACATGACAACC 59.313 47.826 0.00 0.00 40.06 3.77
290 291 3.686726 GGTCTTGATGAGGACATGACAAC 59.313 47.826 0.00 0.00 41.19 3.32
291 292 3.327464 TGGTCTTGATGAGGACATGACAA 59.673 43.478 0.00 0.00 41.19 3.18
292 293 2.905736 TGGTCTTGATGAGGACATGACA 59.094 45.455 0.00 0.00 41.19 3.58
293 294 3.616956 TGGTCTTGATGAGGACATGAC 57.383 47.619 0.00 0.00 39.79 3.06
294 295 4.582869 CTTTGGTCTTGATGAGGACATGA 58.417 43.478 0.00 0.00 36.82 3.07
295 296 3.128242 GCTTTGGTCTTGATGAGGACATG 59.872 47.826 0.00 0.00 36.82 3.21
296 297 3.350833 GCTTTGGTCTTGATGAGGACAT 58.649 45.455 0.00 0.00 39.67 3.06
297 298 2.783135 GCTTTGGTCTTGATGAGGACA 58.217 47.619 0.00 0.00 34.49 4.02
298 299 1.734465 CGCTTTGGTCTTGATGAGGAC 59.266 52.381 0.00 0.00 0.00 3.85
299 300 1.623311 TCGCTTTGGTCTTGATGAGGA 59.377 47.619 0.00 0.00 0.00 3.71
300 301 2.099141 TCGCTTTGGTCTTGATGAGG 57.901 50.000 0.00 0.00 0.00 3.86
301 302 3.748048 TCTTTCGCTTTGGTCTTGATGAG 59.252 43.478 0.00 0.00 0.00 2.90
302 303 3.738982 TCTTTCGCTTTGGTCTTGATGA 58.261 40.909 0.00 0.00 0.00 2.92
303 304 4.023707 ACTTCTTTCGCTTTGGTCTTGATG 60.024 41.667 0.00 0.00 0.00 3.07
304 305 4.023707 CACTTCTTTCGCTTTGGTCTTGAT 60.024 41.667 0.00 0.00 0.00 2.57
315 316 0.389166 CGAGAGCCACTTCTTTCGCT 60.389 55.000 0.00 0.00 34.68 4.93
421 422 3.181524 CGTCGAATTTAAGCAATGTCGGT 60.182 43.478 0.00 0.00 31.61 4.69
429 430 2.659757 CACTCGTCGTCGAATTTAAGCA 59.340 45.455 6.19 0.00 45.61 3.91
433 434 2.485426 AGGTCACTCGTCGTCGAATTTA 59.515 45.455 6.19 0.00 45.61 1.40
488 490 2.037901 TGGTCATGCCAACACATTTGT 58.962 42.857 6.42 0.00 45.94 2.83
520 524 2.694760 GGCGGGAGTTCGACTACGT 61.695 63.158 0.00 0.00 40.69 3.57
524 528 4.698625 AGGGGCGGGAGTTCGACT 62.699 66.667 0.00 0.00 38.41 4.18
588 600 4.618227 GCTTCAGAAAACACCACACAGTTT 60.618 41.667 0.00 0.00 39.46 2.66
674 690 2.633657 GCGGCCATAGTTCATGCG 59.366 61.111 2.24 0.00 32.84 4.73
705 722 0.109827 TTCATGTCCGCACGCAAATG 60.110 50.000 0.00 0.00 0.00 2.32
736 753 0.607489 GATCTGCAGTGTGCCCAACT 60.607 55.000 14.67 0.00 44.23 3.16
744 761 6.660521 TCATTTAAGATTTGGATCTGCAGTGT 59.339 34.615 14.67 3.62 41.78 3.55
751 768 9.352191 CATCCTCTTCATTTAAGATTTGGATCT 57.648 33.333 0.00 0.00 41.48 2.75
754 772 6.322201 GGCATCCTCTTCATTTAAGATTTGGA 59.678 38.462 0.00 0.00 43.32 3.53
763 781 2.803133 CGCTCGGCATCCTCTTCATTTA 60.803 50.000 0.00 0.00 0.00 1.40
794 812 0.248702 GGCGCTTTTGTTCGTTTGGA 60.249 50.000 7.64 0.00 0.00 3.53
826 855 3.737172 GCAACTCCAACGCGCCAT 61.737 61.111 5.73 0.00 0.00 4.40
827 856 4.927782 AGCAACTCCAACGCGCCA 62.928 61.111 5.73 0.00 0.00 5.69
854 883 3.566322 CCCACCTTCGTCATGTTTAACAA 59.434 43.478 0.66 0.00 0.00 2.83
860 889 3.495434 TTAACCCACCTTCGTCATGTT 57.505 42.857 0.00 0.00 0.00 2.71
861 890 3.495434 TTTAACCCACCTTCGTCATGT 57.505 42.857 0.00 0.00 0.00 3.21
862 891 4.457603 TGATTTTAACCCACCTTCGTCATG 59.542 41.667 0.00 0.00 0.00 3.07
863 892 4.658063 TGATTTTAACCCACCTTCGTCAT 58.342 39.130 0.00 0.00 0.00 3.06
864 893 4.088056 TGATTTTAACCCACCTTCGTCA 57.912 40.909 0.00 0.00 0.00 4.35
865 894 5.638596 ATTGATTTTAACCCACCTTCGTC 57.361 39.130 0.00 0.00 0.00 4.20
866 895 6.413783 AAATTGATTTTAACCCACCTTCGT 57.586 33.333 0.00 0.00 0.00 3.85
867 896 6.367695 GGAAAATTGATTTTAACCCACCTTCG 59.632 38.462 1.93 0.00 39.86 3.79
868 897 6.653320 GGGAAAATTGATTTTAACCCACCTTC 59.347 38.462 15.73 0.00 40.66 3.46
869 898 6.539173 GGGAAAATTGATTTTAACCCACCTT 58.461 36.000 15.73 0.00 40.66 3.50
870 899 5.279758 CGGGAAAATTGATTTTAACCCACCT 60.280 40.000 18.56 0.00 40.83 4.00
871 900 4.932799 CGGGAAAATTGATTTTAACCCACC 59.067 41.667 18.56 9.01 40.83 4.61
872 901 5.785243 TCGGGAAAATTGATTTTAACCCAC 58.215 37.500 18.56 3.62 40.83 4.61
873 902 5.046950 CCTCGGGAAAATTGATTTTAACCCA 60.047 40.000 18.56 7.59 40.83 4.51
874 903 5.186215 TCCTCGGGAAAATTGATTTTAACCC 59.814 40.000 12.61 12.61 39.86 4.11
875 904 6.275494 TCCTCGGGAAAATTGATTTTAACC 57.725 37.500 1.93 6.91 39.86 2.85
902 931 1.278127 ACATCTACAACAGAACCCCCG 59.722 52.381 0.00 0.00 36.67 5.73
904 933 4.003648 CAGAACATCTACAACAGAACCCC 58.996 47.826 0.00 0.00 36.67 4.95
911 940 5.368145 AGCAGTTTCAGAACATCTACAACA 58.632 37.500 0.00 0.00 38.26 3.33
918 947 3.614616 CGGAGTAGCAGTTTCAGAACATC 59.385 47.826 0.00 0.00 38.26 3.06
922 951 4.220821 AGATTCGGAGTAGCAGTTTCAGAA 59.779 41.667 0.00 0.00 31.49 3.02
1566 1598 2.496817 GCGATCTTCTCCCAGCGT 59.503 61.111 0.00 0.00 0.00 5.07
1896 1928 0.387929 TCCGAAAGTCACGCTTGAGT 59.612 50.000 0.00 0.00 37.52 3.41
2114 2146 8.735315 TCTGAATGATAAAAAGATGCCGTTTAA 58.265 29.630 0.00 0.00 0.00 1.52
2440 2496 8.280258 AGGATTTTATAGTGATCAGGAATGGA 57.720 34.615 0.00 0.00 0.00 3.41
2463 2519 7.219322 AGTTCCAAAAATCAAAATGAGGAAGG 58.781 34.615 0.00 0.00 34.85 3.46
2716 2772 2.367567 GCATAATCCTGGTAACTCCGGA 59.632 50.000 2.93 2.93 45.09 5.14
2722 2778 3.321111 TCCTCGAGCATAATCCTGGTAAC 59.679 47.826 6.99 0.00 0.00 2.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.