Multiple sequence alignment - TraesCS7D01G294600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G294600 chr7D 100.000 5688 0 0 1 5688 368562640 368568327 0.000000e+00 10504.0
1 TraesCS7D01G294600 chr7A 95.223 2931 82 16 792 3694 407861084 407863984 0.000000e+00 4584.0
2 TraesCS7D01G294600 chr7A 94.944 1068 32 8 3705 4759 407864060 407865118 0.000000e+00 1653.0
3 TraesCS7D01G294600 chr7A 92.185 627 46 3 1 626 407860208 407860832 0.000000e+00 883.0
4 TraesCS7D01G294600 chr7A 87.117 326 16 13 4980 5305 407868534 407868833 4.220000e-91 346.0
5 TraesCS7D01G294600 chr7A 89.796 196 10 2 4767 4962 407865278 407865463 5.690000e-60 243.0
6 TraesCS7D01G294600 chr7A 91.358 162 13 1 607 767 407860868 407861029 2.670000e-53 220.0
7 TraesCS7D01G294600 chr7A 85.321 109 11 4 4055 4158 98100750 98100642 2.170000e-19 108.0
8 TraesCS7D01G294600 chr7B 92.509 2443 95 36 4 2368 313174285 313176717 0.000000e+00 3417.0
9 TraesCS7D01G294600 chr7B 93.229 1787 68 11 2366 4130 313176840 313178595 0.000000e+00 2580.0
10 TraesCS7D01G294600 chr7B 96.244 639 9 4 4127 4751 313178674 313179311 0.000000e+00 1033.0
11 TraesCS7D01G294600 chr7B 88.773 383 18 14 4925 5305 313194752 313195111 4.040000e-121 446.0
12 TraesCS7D01G294600 chr7B 93.805 113 5 2 4765 4877 313179471 313179581 9.800000e-38 169.0
13 TraesCS7D01G294600 chr7B 80.184 217 25 9 3951 4153 619076554 619076766 4.590000e-31 147.0
14 TraesCS7D01G294600 chr2A 95.765 1653 43 7 1 1634 337543385 337545029 0.000000e+00 2639.0
15 TraesCS7D01G294600 chr2D 85.761 309 43 1 5379 5687 494648104 494647797 5.500000e-85 326.0
16 TraesCS7D01G294600 chr2D 82.736 307 47 5 5382 5684 145734685 145734989 9.390000e-68 268.0
17 TraesCS7D01G294600 chr2D 81.961 255 28 8 3911 4151 81159742 81159492 3.480000e-47 200.0
18 TraesCS7D01G294600 chr5D 83.444 302 45 5 5382 5678 114967203 114967504 5.610000e-70 276.0
19 TraesCS7D01G294600 chr5D 88.261 230 24 2 5461 5687 548018125 548017896 7.260000e-69 272.0
20 TraesCS7D01G294600 chr5D 81.433 307 50 7 5381 5684 432036590 432036288 1.580000e-60 244.0
21 TraesCS7D01G294600 chr5D 81.433 307 47 10 5383 5684 69985718 69986019 5.690000e-60 243.0
22 TraesCS7D01G294600 chr5D 78.646 192 24 9 3964 4141 45172378 45172566 1.680000e-20 111.0
23 TraesCS7D01G294600 chrUn 82.911 316 39 13 5382 5687 29468400 29468090 2.610000e-68 270.0
24 TraesCS7D01G294600 chr5B 83.051 295 42 7 5395 5684 71302152 71302443 1.570000e-65 261.0
25 TraesCS7D01G294600 chr4D 81.230 309 51 5 5382 5688 138277015 138276712 5.690000e-60 243.0
26 TraesCS7D01G294600 chr4D 91.429 70 6 0 2123 2192 274543524 274543593 4.690000e-16 97.1
27 TraesCS7D01G294600 chr4A 80.843 261 32 10 3903 4149 321899317 321899573 7.520000e-44 189.0
28 TraesCS7D01G294600 chr4A 94.286 70 4 0 2123 2192 210195494 210195563 2.170000e-19 108.0
29 TraesCS7D01G294600 chr5A 78.077 260 33 14 3909 4150 367594539 367594792 5.940000e-30 143.0
30 TraesCS7D01G294600 chr6B 78.505 214 28 9 3951 4149 155749297 155749507 2.150000e-24 124.0
31 TraesCS7D01G294600 chr4B 90.000 70 7 0 2123 2192 273427402 273427471 2.180000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G294600 chr7D 368562640 368568327 5687 False 10504.00 10504 100.00000 1 5688 1 chr7D.!!$F1 5687
1 TraesCS7D01G294600 chr7A 407860208 407868833 8625 False 1321.50 4584 91.77050 1 5305 6 chr7A.!!$F1 5304
2 TraesCS7D01G294600 chr7B 313174285 313179581 5296 False 1799.75 3417 93.94675 4 4877 4 chr7B.!!$F3 4873
3 TraesCS7D01G294600 chr2A 337543385 337545029 1644 False 2639.00 2639 95.76500 1 1634 1 chr2A.!!$F1 1633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 728 0.461548 CCTCATCTCTTGTAGCGGCA 59.538 55.0 1.45 0.0 0.00 5.69 F
723 783 0.475632 TTCCCCTTTCTCCAGGCAGA 60.476 55.0 0.00 0.0 31.69 4.26 F
2101 2235 0.613777 CAGTGGTGAAGTACTCCCCC 59.386 60.0 0.00 0.0 0.00 5.40 F
3468 3729 0.040514 TGCCATTTTTCTGTCGCACG 60.041 50.0 0.00 0.0 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2165 2299 2.401351 GGGAACGATTATACGAGGCAC 58.599 52.381 0.0 0.0 37.03 5.01 R
2586 2845 2.531206 GCTCGTGAGTACCAAGATGTC 58.469 52.381 0.0 0.0 32.98 3.06 R
4052 4385 0.399806 ATGGGTTGGTTGGTTGCCTT 60.400 50.000 0.0 0.0 0.00 4.35 R
5432 9077 0.037160 GGACCCCTTTTTAGCACCGA 59.963 55.000 0.0 0.0 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 105 8.680903 CACCAAGCATATAATCTAATCAATCCC 58.319 37.037 0.00 0.00 0.00 3.85
161 164 7.367828 AGGATAAGGTGTGGAGTAATTACCTA 58.632 38.462 12.05 0.00 40.70 3.08
219 222 4.853007 AGAGAATGCCAATACAAAGCTCT 58.147 39.130 0.00 0.00 0.00 4.09
561 564 3.665745 ACGGGTTAGTTTCGCTAAGAA 57.334 42.857 0.00 0.00 40.07 2.52
669 728 0.461548 CCTCATCTCTTGTAGCGGCA 59.538 55.000 1.45 0.00 0.00 5.69
723 783 0.475632 TTCCCCTTTCTCCAGGCAGA 60.476 55.000 0.00 0.00 31.69 4.26
760 821 4.238761 TGTTTCTCTCGAAGTGAACGAT 57.761 40.909 0.00 0.00 39.02 3.73
785 867 3.119280 TGTTCATCCTTTCTCGCGTATCA 60.119 43.478 5.77 0.00 0.00 2.15
804 895 3.608067 TCATAGGGAGGATAATTGGGCA 58.392 45.455 0.00 0.00 0.00 5.36
835 926 1.079127 CCACGTAACCAGAGGGCTG 60.079 63.158 0.00 0.00 41.93 4.85
1637 1742 3.134458 GCACTGCAAGAAGTTCTACACT 58.866 45.455 5.65 0.00 37.43 3.55
1915 2020 3.045688 GTGAGCGCCTCTTTTTCTTTTG 58.954 45.455 2.29 0.00 0.00 2.44
1923 2028 5.739161 CGCCTCTTTTTCTTTTGATAATCGG 59.261 40.000 0.00 0.00 0.00 4.18
2101 2235 0.613777 CAGTGGTGAAGTACTCCCCC 59.386 60.000 0.00 0.00 0.00 5.40
2165 2299 1.895020 TACTGTGCAGGGGTAAGGCG 61.895 60.000 4.11 0.00 0.00 5.52
2219 2353 2.028930 CACTGGGTCTGTCCTTACTCAC 60.029 54.545 0.00 0.00 36.25 3.51
2492 2751 7.044181 CAGCTTACCTGAAACTCTATGATTGA 58.956 38.462 0.00 0.00 44.64 2.57
2568 2827 6.325286 AGGTTTATGAGTTCTCTATGGGTCTC 59.675 42.308 1.53 0.00 0.00 3.36
2576 2835 8.503573 TGAGTTCTCTATGGGTCTCTAAGATTA 58.496 37.037 1.53 0.00 0.00 1.75
2586 2845 6.183360 TGGGTCTCTAAGATTATTCAGAACCG 60.183 42.308 0.00 0.00 40.16 4.44
2606 2865 2.531206 GACATCTTGGTACTCACGAGC 58.469 52.381 0.00 0.00 0.00 5.03
2818 3077 6.653740 GCTTTATACAGAAGTTGGTTACAGGT 59.346 38.462 0.00 0.00 0.00 4.00
2875 3134 3.795688 ATCTTGAACCTTGCTCTGGAA 57.204 42.857 0.00 0.00 0.00 3.53
3022 3283 7.229308 CCATGGATCAAGGAAGATATCAGAAA 58.771 38.462 5.56 0.00 0.00 2.52
3112 3373 8.853077 TCATCAAACTCACTGATTACTGATTT 57.147 30.769 0.00 0.00 30.99 2.17
3142 3403 2.620242 GGTTAGGAAAATGACCGCGTA 58.380 47.619 4.92 0.00 0.00 4.42
3342 3603 8.784043 GCCTTATTATTACCTGTAGACAATTGG 58.216 37.037 10.83 0.00 0.00 3.16
3468 3729 0.040514 TGCCATTTTTCTGTCGCACG 60.041 50.000 0.00 0.00 0.00 5.34
3697 3964 8.871686 AACTACAGTAAAAATGCAAAAAGGAG 57.128 30.769 0.00 0.00 0.00 3.69
3698 3965 8.007405 ACTACAGTAAAAATGCAAAAAGGAGT 57.993 30.769 0.00 0.00 0.00 3.85
3699 3966 9.127277 ACTACAGTAAAAATGCAAAAAGGAGTA 57.873 29.630 0.00 0.00 0.00 2.59
3839 4172 1.011968 TAGCTAGCAAACACGCACGG 61.012 55.000 18.83 0.00 0.00 4.94
3840 4173 2.604174 GCTAGCAAACACGCACGGT 61.604 57.895 10.63 0.00 0.00 4.83
3937 4270 6.047960 TGAGAATAGTGGGGAGGAGGATAATA 59.952 42.308 0.00 0.00 0.00 0.98
4052 4385 7.987750 TGGCAAATACTGTAGTATCAAAACA 57.012 32.000 5.10 0.41 40.10 2.83
4162 4577 7.147742 CCAAACAGGGCCTTAATGTACATAATT 60.148 37.037 9.21 0.00 0.00 1.40
4225 4641 5.468746 TGTAATTGCAGAACTCCACAAGTAC 59.531 40.000 10.57 10.57 41.46 2.73
4447 4863 1.084018 TCCAGAAATGGAAAGGCCCT 58.916 50.000 0.00 0.00 34.56 5.19
4547 4963 3.751698 CCCAGTTTAGTTCTAGTTGGCAC 59.248 47.826 0.00 0.00 0.00 5.01
4753 5182 1.124780 GGGAAGGAAGGAGCCTACTC 58.875 60.000 0.00 0.00 42.66 2.59
4759 5188 2.119495 GGAAGGAGCCTACTCATTGGA 58.881 52.381 0.00 0.00 46.41 3.53
4762 5191 2.053244 AGGAGCCTACTCATTGGATGG 58.947 52.381 0.00 0.00 45.42 3.51
4763 5192 1.544314 GGAGCCTACTCATTGGATGGC 60.544 57.143 0.00 0.00 45.42 4.40
4785 5367 6.035542 TGGCAGTTTTTCTGTTTTTCGATTTC 59.964 34.615 0.00 0.00 45.23 2.17
4791 5373 9.002080 GTTTTTCTGTTTTTCGATTTCGTCTAA 57.998 29.630 0.00 0.00 40.80 2.10
4825 5407 1.051812 CCCAGTCCAGTCTTGACACT 58.948 55.000 6.82 0.00 35.15 3.55
4826 5408 2.248248 CCCAGTCCAGTCTTGACACTA 58.752 52.381 6.82 0.00 35.15 2.74
4827 5409 2.232452 CCCAGTCCAGTCTTGACACTAG 59.768 54.545 6.82 0.00 35.15 2.57
4828 5410 2.353208 CCAGTCCAGTCTTGACACTAGC 60.353 54.545 6.82 0.00 35.15 3.42
4829 5411 1.542030 AGTCCAGTCTTGACACTAGCG 59.458 52.381 6.82 0.00 35.15 4.26
4830 5412 1.269998 GTCCAGTCTTGACACTAGCGT 59.730 52.381 3.49 0.00 32.91 5.07
4831 5413 1.961394 TCCAGTCTTGACACTAGCGTT 59.039 47.619 3.49 0.00 0.00 4.84
4832 5414 2.364324 TCCAGTCTTGACACTAGCGTTT 59.636 45.455 3.49 0.00 0.00 3.60
4833 5415 3.131396 CCAGTCTTGACACTAGCGTTTT 58.869 45.455 3.49 0.00 0.00 2.43
4921 5512 4.456222 GCTCCCTTCTTAGACCTTCAAAAC 59.544 45.833 0.00 0.00 0.00 2.43
4936 5527 5.049818 CCTTCAAAACAATTATTTTGCGCCA 60.050 36.000 15.55 0.00 45.30 5.69
4962 5553 0.737019 CCCTAACGCGTCGGCTTTAA 60.737 55.000 14.44 0.00 33.18 1.52
4964 5555 1.460359 CCTAACGCGTCGGCTTTAAAA 59.540 47.619 14.44 0.00 33.18 1.52
4966 5557 0.041047 AACGCGTCGGCTTTAAAACC 60.041 50.000 14.44 0.00 36.88 3.27
4974 5565 1.530720 CGGCTTTAAAACCGTTACCGT 59.469 47.619 19.57 0.00 44.46 4.83
4975 5566 2.411418 CGGCTTTAAAACCGTTACCGTC 60.411 50.000 19.57 0.00 44.46 4.79
4976 5567 2.095768 GGCTTTAAAACCGTTACCGTCC 60.096 50.000 0.00 0.00 0.00 4.79
4977 5568 2.095768 GCTTTAAAACCGTTACCGTCCC 60.096 50.000 0.00 0.00 0.00 4.46
4978 5569 2.177394 TTAAAACCGTTACCGTCCCC 57.823 50.000 0.00 0.00 0.00 4.81
4983 8627 2.435410 CGTTACCGTCCCCAAGCC 60.435 66.667 0.00 0.00 0.00 4.35
5030 8674 3.612247 CTCCGCCACTGGTCCCAAG 62.612 68.421 0.00 0.00 0.00 3.61
5043 8687 2.890945 GGTCCCAAGCACAGTAACAAAT 59.109 45.455 0.00 0.00 0.00 2.32
5051 8695 6.586082 CCAAGCACAGTAACAAATAATCAACC 59.414 38.462 0.00 0.00 0.00 3.77
5055 8699 4.157105 ACAGTAACAAATAATCAACCGCCC 59.843 41.667 0.00 0.00 0.00 6.13
5082 8727 0.640495 CCCTTCCCCTCCCTACTACA 59.360 60.000 0.00 0.00 0.00 2.74
5091 8736 4.018779 CCCCTCCCTACTACACAAAATTCA 60.019 45.833 0.00 0.00 0.00 2.57
5092 8737 5.515886 CCCCTCCCTACTACACAAAATTCAA 60.516 44.000 0.00 0.00 0.00 2.69
5094 8739 6.492087 CCCTCCCTACTACACAAAATTCAAAA 59.508 38.462 0.00 0.00 0.00 2.44
5096 8741 8.082242 CCTCCCTACTACACAAAATTCAAAAAG 58.918 37.037 0.00 0.00 0.00 2.27
5118 8763 3.717400 AAAAACACACACACACACACA 57.283 38.095 0.00 0.00 0.00 3.72
5119 8764 2.697431 AAACACACACACACACACAC 57.303 45.000 0.00 0.00 0.00 3.82
5120 8765 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
5121 8766 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5122 8767 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5123 8768 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5124 8769 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5125 8770 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5126 8771 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5127 8772 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
5128 8773 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
5129 8774 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
5130 8775 2.095314 CACACACACACACACACACATT 60.095 45.455 0.00 0.00 0.00 2.71
5167 8812 3.949754 TGCTAGCCATCTGAAGAAAATGG 59.050 43.478 13.29 0.00 42.38 3.16
5169 8814 5.126067 GCTAGCCATCTGAAGAAAATGGTA 58.874 41.667 2.29 0.00 41.67 3.25
5186 8831 4.462508 TGGTAAGAGAGAATGAGCACTG 57.537 45.455 0.00 0.00 0.00 3.66
5253 8898 6.964908 TGAAACCATTATAACACATATGCGG 58.035 36.000 1.58 0.00 0.00 5.69
5305 8950 2.587673 GTGCAAAAACAAAAGCAAACGC 59.412 40.909 0.00 0.00 38.91 4.84
5306 8951 2.224079 TGCAAAAACAAAAGCAAACGCA 59.776 36.364 0.00 0.00 33.48 5.24
5307 8952 2.587673 GCAAAAACAAAAGCAAACGCAC 59.412 40.909 0.00 0.00 0.00 5.34
5308 8953 2.778526 AAAACAAAAGCAAACGCACG 57.221 40.000 0.00 0.00 0.00 5.34
5309 8954 0.995728 AAACAAAAGCAAACGCACGG 59.004 45.000 0.00 0.00 0.00 4.94
5310 8955 0.171455 AACAAAAGCAAACGCACGGA 59.829 45.000 0.00 0.00 0.00 4.69
5311 8956 0.383949 ACAAAAGCAAACGCACGGAT 59.616 45.000 0.00 0.00 0.00 4.18
5312 8957 1.202359 ACAAAAGCAAACGCACGGATT 60.202 42.857 0.00 0.00 0.00 3.01
5313 8958 1.857837 CAAAAGCAAACGCACGGATTT 59.142 42.857 0.00 0.00 0.00 2.17
5314 8959 1.766069 AAAGCAAACGCACGGATTTC 58.234 45.000 0.00 0.00 0.00 2.17
5315 8960 0.951558 AAGCAAACGCACGGATTTCT 59.048 45.000 0.00 0.00 0.00 2.52
5316 8961 0.951558 AGCAAACGCACGGATTTCTT 59.048 45.000 0.00 0.00 0.00 2.52
5317 8962 2.147958 AGCAAACGCACGGATTTCTTA 58.852 42.857 0.00 0.00 0.00 2.10
5318 8963 2.550606 AGCAAACGCACGGATTTCTTAA 59.449 40.909 0.00 0.00 0.00 1.85
5319 8964 2.908626 GCAAACGCACGGATTTCTTAAG 59.091 45.455 0.00 0.00 0.00 1.85
5320 8965 3.608474 GCAAACGCACGGATTTCTTAAGT 60.608 43.478 1.63 0.00 0.00 2.24
5321 8966 3.806316 AACGCACGGATTTCTTAAGTG 57.194 42.857 1.63 0.00 36.05 3.16
5322 8967 2.762745 ACGCACGGATTTCTTAAGTGT 58.237 42.857 1.63 0.00 35.46 3.55
5323 8968 3.916761 ACGCACGGATTTCTTAAGTGTA 58.083 40.909 1.63 0.00 35.46 2.90
5324 8969 3.676646 ACGCACGGATTTCTTAAGTGTAC 59.323 43.478 1.63 0.00 35.46 2.90
5325 8970 3.676172 CGCACGGATTTCTTAAGTGTACA 59.324 43.478 1.63 0.00 35.46 2.90
5326 8971 4.150980 CGCACGGATTTCTTAAGTGTACAA 59.849 41.667 0.00 0.00 35.46 2.41
5327 8972 5.333492 CGCACGGATTTCTTAAGTGTACAAA 60.333 40.000 0.00 0.00 35.46 2.83
5328 8973 6.608610 GCACGGATTTCTTAAGTGTACAAAT 58.391 36.000 0.00 0.75 35.46 2.32
5329 8974 7.412129 CGCACGGATTTCTTAAGTGTACAAATA 60.412 37.037 0.00 0.00 35.46 1.40
5330 8975 7.903431 GCACGGATTTCTTAAGTGTACAAATAG 59.097 37.037 0.00 2.30 35.46 1.73
5331 8976 7.903431 CACGGATTTCTTAAGTGTACAAATAGC 59.097 37.037 0.00 0.00 0.00 2.97
5332 8977 7.117454 CGGATTTCTTAAGTGTACAAATAGCG 58.883 38.462 0.00 0.00 0.00 4.26
5333 8978 7.407337 GGATTTCTTAAGTGTACAAATAGCGG 58.593 38.462 0.00 0.00 0.00 5.52
5334 8979 7.279313 GGATTTCTTAAGTGTACAAATAGCGGA 59.721 37.037 0.00 0.00 0.00 5.54
5335 8980 7.591006 TTTCTTAAGTGTACAAATAGCGGAG 57.409 36.000 0.00 0.00 0.00 4.63
5336 8981 5.657474 TCTTAAGTGTACAAATAGCGGAGG 58.343 41.667 0.00 0.00 0.00 4.30
5337 8982 5.419788 TCTTAAGTGTACAAATAGCGGAGGA 59.580 40.000 0.00 0.00 0.00 3.71
5338 8983 3.802948 AGTGTACAAATAGCGGAGGAG 57.197 47.619 0.00 0.00 0.00 3.69
5339 8984 2.431057 AGTGTACAAATAGCGGAGGAGG 59.569 50.000 0.00 0.00 0.00 4.30
5340 8985 2.429610 GTGTACAAATAGCGGAGGAGGA 59.570 50.000 0.00 0.00 0.00 3.71
5341 8986 2.693591 TGTACAAATAGCGGAGGAGGAG 59.306 50.000 0.00 0.00 0.00 3.69
5342 8987 1.123928 ACAAATAGCGGAGGAGGAGG 58.876 55.000 0.00 0.00 0.00 4.30
5343 8988 0.394565 CAAATAGCGGAGGAGGAGGG 59.605 60.000 0.00 0.00 0.00 4.30
5344 8989 0.264955 AAATAGCGGAGGAGGAGGGA 59.735 55.000 0.00 0.00 0.00 4.20
5345 8990 0.264955 AATAGCGGAGGAGGAGGGAA 59.735 55.000 0.00 0.00 0.00 3.97
5346 8991 0.178947 ATAGCGGAGGAGGAGGGAAG 60.179 60.000 0.00 0.00 0.00 3.46
5347 8992 2.299727 TAGCGGAGGAGGAGGGAAGG 62.300 65.000 0.00 0.00 0.00 3.46
5348 8993 2.444895 CGGAGGAGGAGGGAAGGG 60.445 72.222 0.00 0.00 0.00 3.95
5349 8994 3.010226 CGGAGGAGGAGGGAAGGGA 62.010 68.421 0.00 0.00 0.00 4.20
5350 8995 1.074850 GGAGGAGGAGGGAAGGGAG 60.075 68.421 0.00 0.00 0.00 4.30
5351 8996 1.707200 GAGGAGGAGGGAAGGGAGT 59.293 63.158 0.00 0.00 0.00 3.85
5352 8997 0.043485 GAGGAGGAGGGAAGGGAGTT 59.957 60.000 0.00 0.00 0.00 3.01
5353 8998 0.498685 AGGAGGAGGGAAGGGAGTTT 59.501 55.000 0.00 0.00 0.00 2.66
5354 8999 0.621082 GGAGGAGGGAAGGGAGTTTG 59.379 60.000 0.00 0.00 0.00 2.93
5355 9000 1.657804 GAGGAGGGAAGGGAGTTTGA 58.342 55.000 0.00 0.00 0.00 2.69
5356 9001 1.985895 GAGGAGGGAAGGGAGTTTGAA 59.014 52.381 0.00 0.00 0.00 2.69
5357 9002 2.375509 GAGGAGGGAAGGGAGTTTGAAA 59.624 50.000 0.00 0.00 0.00 2.69
5358 9003 2.996742 AGGAGGGAAGGGAGTTTGAAAT 59.003 45.455 0.00 0.00 0.00 2.17
5359 9004 3.092301 GGAGGGAAGGGAGTTTGAAATG 58.908 50.000 0.00 0.00 0.00 2.32
5360 9005 3.500471 GGAGGGAAGGGAGTTTGAAATGT 60.500 47.826 0.00 0.00 0.00 2.71
5361 9006 4.263771 GGAGGGAAGGGAGTTTGAAATGTA 60.264 45.833 0.00 0.00 0.00 2.29
5362 9007 5.510430 GAGGGAAGGGAGTTTGAAATGTAT 58.490 41.667 0.00 0.00 0.00 2.29
5363 9008 5.264395 AGGGAAGGGAGTTTGAAATGTATG 58.736 41.667 0.00 0.00 0.00 2.39
5364 9009 4.402474 GGGAAGGGAGTTTGAAATGTATGG 59.598 45.833 0.00 0.00 0.00 2.74
5365 9010 5.016831 GGAAGGGAGTTTGAAATGTATGGT 58.983 41.667 0.00 0.00 0.00 3.55
5366 9011 5.125578 GGAAGGGAGTTTGAAATGTATGGTC 59.874 44.000 0.00 0.00 0.00 4.02
5367 9012 5.520748 AGGGAGTTTGAAATGTATGGTCT 57.479 39.130 0.00 0.00 0.00 3.85
5368 9013 5.256474 AGGGAGTTTGAAATGTATGGTCTG 58.744 41.667 0.00 0.00 0.00 3.51
5369 9014 4.399303 GGGAGTTTGAAATGTATGGTCTGG 59.601 45.833 0.00 0.00 0.00 3.86
5370 9015 4.142381 GGAGTTTGAAATGTATGGTCTGGC 60.142 45.833 0.00 0.00 0.00 4.85
5371 9016 3.440173 AGTTTGAAATGTATGGTCTGGCG 59.560 43.478 0.00 0.00 0.00 5.69
5372 9017 3.342377 TTGAAATGTATGGTCTGGCGA 57.658 42.857 0.00 0.00 0.00 5.54
5373 9018 2.627945 TGAAATGTATGGTCTGGCGAC 58.372 47.619 0.00 0.00 39.49 5.19
5374 9019 2.236146 TGAAATGTATGGTCTGGCGACT 59.764 45.455 8.84 0.00 40.10 4.18
5375 9020 3.270877 GAAATGTATGGTCTGGCGACTT 58.729 45.455 8.84 1.84 40.10 3.01
5376 9021 2.315925 ATGTATGGTCTGGCGACTTG 57.684 50.000 8.84 0.00 40.10 3.16
5377 9022 0.391130 TGTATGGTCTGGCGACTTGC 60.391 55.000 8.84 3.24 45.38 4.01
5378 9023 0.108138 GTATGGTCTGGCGACTTGCT 60.108 55.000 8.84 0.00 45.43 3.91
5379 9024 0.613260 TATGGTCTGGCGACTTGCTT 59.387 50.000 8.84 0.00 45.43 3.91
5380 9025 0.250901 ATGGTCTGGCGACTTGCTTT 60.251 50.000 8.84 0.00 45.43 3.51
5381 9026 0.394938 TGGTCTGGCGACTTGCTTTA 59.605 50.000 8.84 0.00 45.43 1.85
5382 9027 1.079503 GGTCTGGCGACTTGCTTTAG 58.920 55.000 8.84 0.00 45.43 1.85
5383 9028 1.337823 GGTCTGGCGACTTGCTTTAGA 60.338 52.381 8.84 0.00 45.43 2.10
5384 9029 1.996191 GTCTGGCGACTTGCTTTAGAG 59.004 52.381 0.00 0.00 45.43 2.43
5385 9030 3.808150 GTCTGGCGACTTGCTTTAGAGC 61.808 54.545 0.00 0.00 45.43 4.09
5399 9044 2.280052 GAGCATCTCCAGCCTCGC 60.280 66.667 0.00 0.00 0.00 5.03
5400 9045 3.805891 GAGCATCTCCAGCCTCGCC 62.806 68.421 0.00 0.00 0.00 5.54
5401 9046 4.925861 GCATCTCCAGCCTCGCCC 62.926 72.222 0.00 0.00 0.00 6.13
5402 9047 4.247380 CATCTCCAGCCTCGCCCC 62.247 72.222 0.00 0.00 0.00 5.80
5403 9048 4.488911 ATCTCCAGCCTCGCCCCT 62.489 66.667 0.00 0.00 0.00 4.79
5404 9049 3.088090 ATCTCCAGCCTCGCCCCTA 62.088 63.158 0.00 0.00 0.00 3.53
5405 9050 2.605535 ATCTCCAGCCTCGCCCCTAA 62.606 60.000 0.00 0.00 0.00 2.69
5406 9051 3.081409 TCCAGCCTCGCCCCTAAC 61.081 66.667 0.00 0.00 0.00 2.34
5407 9052 3.399181 CCAGCCTCGCCCCTAACA 61.399 66.667 0.00 0.00 0.00 2.41
5408 9053 2.187946 CAGCCTCGCCCCTAACAG 59.812 66.667 0.00 0.00 0.00 3.16
5409 9054 3.083997 AGCCTCGCCCCTAACAGG 61.084 66.667 0.00 0.00 34.30 4.00
5415 9060 3.668142 GCCCCTAACAGGCCCCAA 61.668 66.667 0.00 0.00 45.16 4.12
5416 9061 3.186305 CCCCTAACAGGCCCCAAA 58.814 61.111 0.00 0.00 32.73 3.28
5417 9062 1.000359 CCCCTAACAGGCCCCAAAG 60.000 63.158 0.00 0.00 32.73 2.77
5418 9063 1.000359 CCCTAACAGGCCCCAAAGG 60.000 63.158 0.00 1.37 32.73 3.11
5419 9064 1.774300 CCTAACAGGCCCCAAAGGT 59.226 57.895 0.00 0.00 38.26 3.50
5420 9065 0.323451 CCTAACAGGCCCCAAAGGTC 60.323 60.000 0.00 0.00 42.50 3.85
5421 9066 0.323451 CTAACAGGCCCCAAAGGTCC 60.323 60.000 0.00 0.00 43.64 4.46
5422 9067 1.795951 TAACAGGCCCCAAAGGTCCC 61.796 60.000 0.00 0.00 43.64 4.46
5423 9068 3.268032 CAGGCCCCAAAGGTCCCT 61.268 66.667 0.00 0.00 43.64 4.20
5424 9069 2.454511 AGGCCCCAAAGGTCCCTT 60.455 61.111 0.00 0.00 43.64 3.95
5425 9070 2.037367 GGCCCCAAAGGTCCCTTC 59.963 66.667 0.00 0.00 38.26 3.46
5426 9071 2.548547 GGCCCCAAAGGTCCCTTCT 61.549 63.158 0.00 0.00 38.26 2.85
5427 9072 1.465172 GCCCCAAAGGTCCCTTCTT 59.535 57.895 0.00 0.00 38.26 2.52
5428 9073 0.702316 GCCCCAAAGGTCCCTTCTTA 59.298 55.000 0.00 0.00 38.26 2.10
5429 9074 1.341089 GCCCCAAAGGTCCCTTCTTAG 60.341 57.143 0.00 0.00 38.26 2.18
5430 9075 1.341089 CCCCAAAGGTCCCTTCTTAGC 60.341 57.143 0.00 0.00 34.84 3.09
5431 9076 1.679032 CCCAAAGGTCCCTTCTTAGCG 60.679 57.143 0.00 0.00 34.84 4.26
5432 9077 1.003233 CCAAAGGTCCCTTCTTAGCGT 59.997 52.381 0.00 0.00 34.84 5.07
5433 9078 2.347731 CAAAGGTCCCTTCTTAGCGTC 58.652 52.381 0.00 0.00 34.84 5.19
5434 9079 0.531200 AAGGTCCCTTCTTAGCGTCG 59.469 55.000 0.00 0.00 0.00 5.12
5435 9080 1.141234 GGTCCCTTCTTAGCGTCGG 59.859 63.158 0.00 0.00 0.00 4.79
5436 9081 1.602327 GGTCCCTTCTTAGCGTCGGT 61.602 60.000 1.19 1.19 0.00 4.69
5437 9082 0.458025 GTCCCTTCTTAGCGTCGGTG 60.458 60.000 7.30 0.00 0.00 4.94
5438 9083 1.810030 CCCTTCTTAGCGTCGGTGC 60.810 63.158 7.30 0.00 0.00 5.01
5440 9085 0.454600 CCTTCTTAGCGTCGGTGCTA 59.545 55.000 7.30 5.57 45.14 3.49
5446 9091 1.717194 TAGCGTCGGTGCTAAAAAGG 58.283 50.000 7.30 0.00 45.14 3.11
5447 9092 0.953960 AGCGTCGGTGCTAAAAAGGG 60.954 55.000 0.00 0.00 45.14 3.95
5448 9093 1.918868 GCGTCGGTGCTAAAAAGGGG 61.919 60.000 0.00 0.00 0.00 4.79
5449 9094 0.604511 CGTCGGTGCTAAAAAGGGGT 60.605 55.000 0.00 0.00 0.00 4.95
5450 9095 1.162698 GTCGGTGCTAAAAAGGGGTC 58.837 55.000 0.00 0.00 0.00 4.46
5451 9096 0.037160 TCGGTGCTAAAAAGGGGTCC 59.963 55.000 0.00 0.00 0.00 4.46
5452 9097 0.250989 CGGTGCTAAAAAGGGGTCCA 60.251 55.000 0.00 0.00 0.00 4.02
5453 9098 1.545841 GGTGCTAAAAAGGGGTCCAG 58.454 55.000 0.00 0.00 0.00 3.86
5454 9099 1.074889 GGTGCTAAAAAGGGGTCCAGA 59.925 52.381 0.00 0.00 0.00 3.86
5455 9100 2.160205 GTGCTAAAAAGGGGTCCAGAC 58.840 52.381 0.00 0.00 0.00 3.51
5456 9101 2.062636 TGCTAAAAAGGGGTCCAGACT 58.937 47.619 0.00 0.00 0.00 3.24
5457 9102 2.039879 TGCTAAAAAGGGGTCCAGACTC 59.960 50.000 0.00 0.00 0.00 3.36
5458 9103 2.935676 GCTAAAAAGGGGTCCAGACTCG 60.936 54.545 0.00 0.00 30.91 4.18
5459 9104 1.137697 AAAAAGGGGTCCAGACTCGT 58.862 50.000 0.00 0.00 30.91 4.18
5460 9105 0.685660 AAAAGGGGTCCAGACTCGTC 59.314 55.000 0.00 0.00 30.91 4.20
5461 9106 1.192803 AAAGGGGTCCAGACTCGTCC 61.193 60.000 0.00 0.00 30.91 4.79
5462 9107 2.037527 GGGGTCCAGACTCGTCCT 59.962 66.667 0.00 0.00 30.91 3.85
5463 9108 2.053277 GGGGTCCAGACTCGTCCTC 61.053 68.421 0.00 0.00 30.91 3.71
5464 9109 1.304217 GGGTCCAGACTCGTCCTCA 60.304 63.158 0.00 0.00 0.00 3.86
5465 9110 1.316706 GGGTCCAGACTCGTCCTCAG 61.317 65.000 0.00 0.00 0.00 3.35
5466 9111 0.322636 GGTCCAGACTCGTCCTCAGA 60.323 60.000 0.00 0.00 0.00 3.27
5467 9112 1.535833 GTCCAGACTCGTCCTCAGAA 58.464 55.000 0.00 0.00 0.00 3.02
5468 9113 1.470890 GTCCAGACTCGTCCTCAGAAG 59.529 57.143 0.00 0.00 0.00 2.85
5469 9114 0.172352 CCAGACTCGTCCTCAGAAGC 59.828 60.000 0.00 0.00 0.00 3.86
5470 9115 0.172352 CAGACTCGTCCTCAGAAGCC 59.828 60.000 0.00 0.00 0.00 4.35
5471 9116 0.968393 AGACTCGTCCTCAGAAGCCC 60.968 60.000 0.00 0.00 0.00 5.19
5472 9117 1.228894 ACTCGTCCTCAGAAGCCCA 60.229 57.895 0.00 0.00 0.00 5.36
5473 9118 0.616111 ACTCGTCCTCAGAAGCCCAT 60.616 55.000 0.00 0.00 0.00 4.00
5474 9119 0.539051 CTCGTCCTCAGAAGCCCATT 59.461 55.000 0.00 0.00 0.00 3.16
5475 9120 0.984230 TCGTCCTCAGAAGCCCATTT 59.016 50.000 0.00 0.00 0.00 2.32
5476 9121 1.351017 TCGTCCTCAGAAGCCCATTTT 59.649 47.619 0.00 0.00 0.00 1.82
5477 9122 2.162681 CGTCCTCAGAAGCCCATTTTT 58.837 47.619 0.00 0.00 0.00 1.94
5478 9123 2.162408 CGTCCTCAGAAGCCCATTTTTC 59.838 50.000 0.00 0.00 0.00 2.29
5479 9124 2.162408 GTCCTCAGAAGCCCATTTTTCG 59.838 50.000 0.00 0.00 0.00 3.46
5480 9125 1.135286 CCTCAGAAGCCCATTTTTCGC 60.135 52.381 0.00 0.00 0.00 4.70
5481 9126 0.887933 TCAGAAGCCCATTTTTCGCC 59.112 50.000 0.00 0.00 0.00 5.54
5482 9127 0.456653 CAGAAGCCCATTTTTCGCCG 60.457 55.000 0.00 0.00 0.00 6.46
5483 9128 1.153842 GAAGCCCATTTTTCGCCGG 60.154 57.895 0.00 0.00 0.00 6.13
5484 9129 1.873270 GAAGCCCATTTTTCGCCGGT 61.873 55.000 1.90 0.00 0.00 5.28
5485 9130 1.468506 AAGCCCATTTTTCGCCGGTT 61.469 50.000 1.90 0.00 0.00 4.44
5486 9131 0.609681 AGCCCATTTTTCGCCGGTTA 60.610 50.000 1.90 0.00 0.00 2.85
5487 9132 0.179148 GCCCATTTTTCGCCGGTTAG 60.179 55.000 1.90 0.00 0.00 2.34
5488 9133 0.454196 CCCATTTTTCGCCGGTTAGG 59.546 55.000 1.90 0.00 44.97 2.69
5499 9144 1.102978 CCGGTTAGGCCTGAAATTGG 58.897 55.000 17.99 5.82 34.25 3.16
5505 9150 4.496927 GCCTGAAATTGGCGCCGG 62.497 66.667 23.90 16.08 41.03 6.13
5506 9151 3.061848 CCTGAAATTGGCGCCGGT 61.062 61.111 23.90 10.16 0.00 5.28
5507 9152 2.179018 CTGAAATTGGCGCCGGTG 59.821 61.111 23.90 11.67 0.00 4.94
5508 9153 3.340953 CTGAAATTGGCGCCGGTGG 62.341 63.158 23.90 3.39 0.00 4.61
5509 9154 3.059386 GAAATTGGCGCCGGTGGA 61.059 61.111 23.90 0.00 0.00 4.02
5510 9155 3.336715 GAAATTGGCGCCGGTGGAC 62.337 63.158 23.90 5.19 0.00 4.02
5520 9165 3.636231 CGGTGGACCCAGGCTGAA 61.636 66.667 17.94 0.00 0.00 3.02
5521 9166 2.034221 GGTGGACCCAGGCTGAAC 59.966 66.667 17.94 6.54 0.00 3.18
5522 9167 2.529744 GGTGGACCCAGGCTGAACT 61.530 63.158 17.94 0.00 0.00 3.01
5523 9168 1.003233 GTGGACCCAGGCTGAACTC 60.003 63.158 17.94 6.78 0.00 3.01
5524 9169 2.266055 GGACCCAGGCTGAACTCG 59.734 66.667 17.94 0.00 0.00 4.18
5525 9170 2.266055 GACCCAGGCTGAACTCGG 59.734 66.667 17.94 10.75 0.00 4.63
5552 9197 4.324991 GACGCCGGGGGAAGTGTT 62.325 66.667 23.83 0.00 0.00 3.32
5553 9198 3.837570 GACGCCGGGGGAAGTGTTT 62.838 63.158 23.83 0.00 0.00 2.83
5554 9199 2.596338 CGCCGGGGGAAGTGTTTT 60.596 61.111 11.42 0.00 0.00 2.43
5555 9200 2.197605 CGCCGGGGGAAGTGTTTTT 61.198 57.895 11.42 0.00 0.00 1.94
5556 9201 1.365999 GCCGGGGGAAGTGTTTTTG 59.634 57.895 2.18 0.00 0.00 2.44
5557 9202 2.046108 CCGGGGGAAGTGTTTTTGG 58.954 57.895 0.00 0.00 0.00 3.28
5558 9203 1.365999 CGGGGGAAGTGTTTTTGGC 59.634 57.895 0.00 0.00 0.00 4.52
5559 9204 1.365999 GGGGGAAGTGTTTTTGGCG 59.634 57.895 0.00 0.00 0.00 5.69
5560 9205 1.300620 GGGGAAGTGTTTTTGGCGC 60.301 57.895 0.00 0.00 0.00 6.53
5561 9206 1.660264 GGGAAGTGTTTTTGGCGCG 60.660 57.895 0.00 0.00 0.00 6.86
5562 9207 1.357334 GGAAGTGTTTTTGGCGCGA 59.643 52.632 12.10 0.00 0.00 5.87
5563 9208 0.248702 GGAAGTGTTTTTGGCGCGAA 60.249 50.000 12.10 0.00 0.00 4.70
5564 9209 1.551145 GAAGTGTTTTTGGCGCGAAA 58.449 45.000 13.91 13.91 0.00 3.46
5565 9210 1.516864 GAAGTGTTTTTGGCGCGAAAG 59.483 47.619 17.08 0.00 0.00 2.62
5592 9237 4.436998 CCCGCCGAGTCAGTGACC 62.437 72.222 19.71 10.25 32.18 4.02
5593 9238 3.680786 CCGCCGAGTCAGTGACCA 61.681 66.667 19.71 0.00 32.18 4.02
5594 9239 2.126307 CGCCGAGTCAGTGACCAG 60.126 66.667 19.71 13.34 32.18 4.00
5595 9240 2.433318 GCCGAGTCAGTGACCAGC 60.433 66.667 19.71 15.58 32.18 4.85
5596 9241 2.262915 CCGAGTCAGTGACCAGCC 59.737 66.667 19.71 6.13 32.18 4.85
5597 9242 2.126307 CGAGTCAGTGACCAGCCG 60.126 66.667 19.71 13.74 32.18 5.52
5598 9243 2.433318 GAGTCAGTGACCAGCCGC 60.433 66.667 19.71 0.00 32.18 6.53
5599 9244 3.226429 GAGTCAGTGACCAGCCGCA 62.226 63.158 19.71 0.00 32.18 5.69
5600 9245 2.046892 GTCAGTGACCAGCCGCAT 60.047 61.111 12.54 0.00 0.00 4.73
5601 9246 2.103042 GTCAGTGACCAGCCGCATC 61.103 63.158 12.54 0.00 0.00 3.91
5602 9247 2.267006 CAGTGACCAGCCGCATCT 59.733 61.111 0.00 0.00 0.00 2.90
5603 9248 1.812922 CAGTGACCAGCCGCATCTC 60.813 63.158 0.00 0.00 0.00 2.75
5604 9249 2.887568 GTGACCAGCCGCATCTCG 60.888 66.667 0.00 0.00 38.08 4.04
5605 9250 3.381983 TGACCAGCCGCATCTCGT 61.382 61.111 0.00 0.00 36.19 4.18
5606 9251 2.583593 GACCAGCCGCATCTCGTC 60.584 66.667 0.00 0.00 36.19 4.20
5607 9252 3.069980 GACCAGCCGCATCTCGTCT 62.070 63.158 0.00 0.00 36.19 4.18
5608 9253 2.185350 CCAGCCGCATCTCGTCTT 59.815 61.111 0.00 0.00 36.19 3.01
5609 9254 1.880340 CCAGCCGCATCTCGTCTTC 60.880 63.158 0.00 0.00 36.19 2.87
5610 9255 1.140589 CAGCCGCATCTCGTCTTCT 59.859 57.895 0.00 0.00 36.19 2.85
5611 9256 0.459237 CAGCCGCATCTCGTCTTCTT 60.459 55.000 0.00 0.00 36.19 2.52
5612 9257 0.179124 AGCCGCATCTCGTCTTCTTC 60.179 55.000 0.00 0.00 36.19 2.87
5613 9258 0.458543 GCCGCATCTCGTCTTCTTCA 60.459 55.000 0.00 0.00 36.19 3.02
5614 9259 1.804372 GCCGCATCTCGTCTTCTTCAT 60.804 52.381 0.00 0.00 36.19 2.57
5615 9260 2.123342 CCGCATCTCGTCTTCTTCATC 58.877 52.381 0.00 0.00 36.19 2.92
5616 9261 1.778026 CGCATCTCGTCTTCTTCATCG 59.222 52.381 0.00 0.00 0.00 3.84
5617 9262 2.792890 CGCATCTCGTCTTCTTCATCGT 60.793 50.000 0.00 0.00 0.00 3.73
5618 9263 2.786578 GCATCTCGTCTTCTTCATCGTC 59.213 50.000 0.00 0.00 0.00 4.20
5619 9264 3.488384 GCATCTCGTCTTCTTCATCGTCT 60.488 47.826 0.00 0.00 0.00 4.18
5620 9265 4.278858 CATCTCGTCTTCTTCATCGTCTC 58.721 47.826 0.00 0.00 0.00 3.36
5621 9266 2.348971 TCTCGTCTTCTTCATCGTCTCG 59.651 50.000 0.00 0.00 0.00 4.04
5622 9267 2.074576 TCGTCTTCTTCATCGTCTCGT 58.925 47.619 0.00 0.00 0.00 4.18
5623 9268 2.483106 TCGTCTTCTTCATCGTCTCGTT 59.517 45.455 0.00 0.00 0.00 3.85
5624 9269 3.058432 TCGTCTTCTTCATCGTCTCGTTT 60.058 43.478 0.00 0.00 0.00 3.60
5625 9270 3.669122 CGTCTTCTTCATCGTCTCGTTTT 59.331 43.478 0.00 0.00 0.00 2.43
5626 9271 4.201409 CGTCTTCTTCATCGTCTCGTTTTC 60.201 45.833 0.00 0.00 0.00 2.29
5627 9272 4.090210 GTCTTCTTCATCGTCTCGTTTTCC 59.910 45.833 0.00 0.00 0.00 3.13
5628 9273 2.955614 TCTTCATCGTCTCGTTTTCCC 58.044 47.619 0.00 0.00 0.00 3.97
5629 9274 2.297880 TCTTCATCGTCTCGTTTTCCCA 59.702 45.455 0.00 0.00 0.00 4.37
5630 9275 2.074547 TCATCGTCTCGTTTTCCCAC 57.925 50.000 0.00 0.00 0.00 4.61
5631 9276 0.713883 CATCGTCTCGTTTTCCCACG 59.286 55.000 0.00 0.00 41.78 4.94
5632 9277 0.389426 ATCGTCTCGTTTTCCCACGG 60.389 55.000 0.00 0.00 40.74 4.94
5633 9278 2.025418 CGTCTCGTTTTCCCACGGG 61.025 63.158 0.00 0.00 42.40 5.28
5634 9279 1.670083 GTCTCGTTTTCCCACGGGG 60.670 63.158 0.00 0.00 46.11 5.73
5644 9289 3.525221 CCACGGGGAATCAATGCC 58.475 61.111 0.00 0.00 39.22 4.40
5645 9290 1.379710 CCACGGGGAATCAATGCCA 60.380 57.895 0.00 0.00 42.44 4.92
5646 9291 0.969917 CCACGGGGAATCAATGCCAA 60.970 55.000 0.00 0.00 42.44 4.52
5647 9292 0.457035 CACGGGGAATCAATGCCAAG 59.543 55.000 0.00 0.00 42.44 3.61
5648 9293 0.684153 ACGGGGAATCAATGCCAAGG 60.684 55.000 0.00 0.00 42.44 3.61
5649 9294 1.825341 GGGGAATCAATGCCAAGGC 59.175 57.895 3.61 3.61 42.44 4.35
5650 9295 0.688749 GGGGAATCAATGCCAAGGCT 60.689 55.000 12.96 0.00 42.44 4.58
5651 9296 0.462789 GGGAATCAATGCCAAGGCTG 59.537 55.000 12.96 3.28 39.85 4.85
5652 9297 0.179092 GGAATCAATGCCAAGGCTGC 60.179 55.000 12.96 0.00 42.51 5.25
5653 9298 0.179092 GAATCAATGCCAAGGCTGCC 60.179 55.000 11.65 11.65 42.51 4.85
5654 9299 1.952102 AATCAATGCCAAGGCTGCCG 61.952 55.000 13.96 0.00 42.51 5.69
5655 9300 4.807039 CAATGCCAAGGCTGCCGC 62.807 66.667 13.96 11.58 42.51 6.53
5670 9315 4.473520 CGCCGGTCAGCCTTCCAT 62.474 66.667 1.90 0.00 0.00 3.41
5671 9316 2.044946 GCCGGTCAGCCTTCCATT 60.045 61.111 1.90 0.00 0.00 3.16
5672 9317 2.409870 GCCGGTCAGCCTTCCATTG 61.410 63.158 1.90 0.00 0.00 2.82
5673 9318 1.299648 CCGGTCAGCCTTCCATTGA 59.700 57.895 0.00 0.00 0.00 2.57
5674 9319 0.107017 CCGGTCAGCCTTCCATTGAT 60.107 55.000 0.00 0.00 0.00 2.57
5675 9320 1.683011 CCGGTCAGCCTTCCATTGATT 60.683 52.381 0.00 0.00 0.00 2.57
5676 9321 1.672881 CGGTCAGCCTTCCATTGATTC 59.327 52.381 0.00 0.00 0.00 2.52
5677 9322 2.027385 GGTCAGCCTTCCATTGATTCC 58.973 52.381 0.00 0.00 0.00 3.01
5678 9323 2.357569 GGTCAGCCTTCCATTGATTCCT 60.358 50.000 0.00 0.00 0.00 3.36
5679 9324 2.948315 GTCAGCCTTCCATTGATTCCTC 59.052 50.000 0.00 0.00 0.00 3.71
5680 9325 2.577563 TCAGCCTTCCATTGATTCCTCA 59.422 45.455 0.00 0.00 0.00 3.86
5681 9326 2.686915 CAGCCTTCCATTGATTCCTCAC 59.313 50.000 0.00 0.00 0.00 3.51
5682 9327 1.672881 GCCTTCCATTGATTCCTCACG 59.327 52.381 0.00 0.00 0.00 4.35
5683 9328 2.292267 CCTTCCATTGATTCCTCACGG 58.708 52.381 0.00 0.00 0.00 4.94
5684 9329 2.092968 CCTTCCATTGATTCCTCACGGA 60.093 50.000 0.00 0.00 37.60 4.69
5685 9330 2.691409 TCCATTGATTCCTCACGGAC 57.309 50.000 0.00 0.00 39.60 4.79
5686 9331 1.134818 TCCATTGATTCCTCACGGACG 60.135 52.381 0.00 0.00 39.60 4.79
5687 9332 1.134818 CCATTGATTCCTCACGGACGA 60.135 52.381 0.00 0.00 39.60 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 105 1.648191 CATGCATGTTTTTACGCCACG 59.352 47.619 18.91 0.00 0.00 4.94
219 222 4.943705 GTCAACTGATTTGGGCAGATCTTA 59.056 41.667 0.00 0.00 36.86 2.10
367 370 1.187974 CCCTTTGCCATGATGCTTGA 58.812 50.000 0.00 0.00 0.00 3.02
561 564 3.194116 GCAGGTCCACATCATGATTGTTT 59.806 43.478 5.16 0.00 0.00 2.83
567 570 1.134007 GGATGCAGGTCCACATCATGA 60.134 52.381 20.55 0.00 43.64 3.07
669 728 4.143333 CGGGAGGCCGACACGAAT 62.143 66.667 19.83 0.00 34.88 3.34
723 783 0.188342 AACAACAAGGGGGCATGTCT 59.812 50.000 0.00 0.00 0.00 3.41
760 821 1.404181 CGCGAGAAAGGATGAACAGGA 60.404 52.381 0.00 0.00 0.00 3.86
785 867 3.848975 CTCTGCCCAATTATCCTCCCTAT 59.151 47.826 0.00 0.00 0.00 2.57
804 895 2.694109 GTTACGTGGGCCTATTCTCTCT 59.306 50.000 4.53 0.00 0.00 3.10
835 926 5.297029 GGCTAAATTACTCCACAGGAATGAC 59.703 44.000 0.00 0.00 32.91 3.06
1915 2020 6.590234 ATTTGGGGATTAAAGCCGATTATC 57.410 37.500 0.00 0.00 0.00 1.75
1923 2028 5.122239 GTCTGCAAAATTTGGGGATTAAAGC 59.878 40.000 7.89 0.00 0.00 3.51
2165 2299 2.401351 GGGAACGATTATACGAGGCAC 58.599 52.381 0.00 0.00 37.03 5.01
2219 2353 5.118990 ACAGTCTCATGGAATAAATGGACG 58.881 41.667 0.00 0.00 0.00 4.79
2568 2827 8.759641 CAAGATGTCGGTTCTGAATAATCTTAG 58.240 37.037 11.86 6.87 0.00 2.18
2576 2835 3.703001 ACCAAGATGTCGGTTCTGAAT 57.297 42.857 0.00 0.00 28.43 2.57
2586 2845 2.531206 GCTCGTGAGTACCAAGATGTC 58.469 52.381 0.00 0.00 32.98 3.06
2606 2865 7.526850 GCAAATTTTTGTGAATGTTATGTCACG 59.473 33.333 5.05 0.00 45.83 4.35
2818 3077 3.381590 CCTATATGCTGGCGATGCTACTA 59.618 47.826 0.00 0.00 0.00 1.82
2875 3134 9.553064 CATTACTCTAAGACTTCATAAGCCAAT 57.447 33.333 0.00 0.00 0.00 3.16
2983 3244 6.439636 TGATCCATGGGTTTCTAATCCTAG 57.560 41.667 13.02 0.00 0.00 3.02
3027 3288 7.946207 ACAATATCTAGTCATGTCGAATCTGT 58.054 34.615 0.00 0.00 0.00 3.41
3112 3373 6.775629 GGTCATTTTCCTAACCCATATAAGCA 59.224 38.462 0.00 0.00 0.00 3.91
3342 3603 6.107901 AGATAAGACCTGCAATGGAGATAC 57.892 41.667 2.50 0.00 0.00 2.24
3654 3916 7.860872 ACTGTAGTTTTTGCAATGCTTTACTAC 59.139 33.333 21.49 21.49 0.00 2.73
3724 4056 7.602644 TCTGTTATGTCAAGACCACAGTATTTC 59.397 37.037 17.02 0.00 35.78 2.17
3789 4122 1.879380 AGCTTTTACAACATCGCAGCA 59.121 42.857 0.00 0.00 0.00 4.41
3849 4182 1.599542 CTTAATGCAACGGCTAGCTCC 59.400 52.381 15.72 0.00 41.91 4.70
4018 4351 3.572255 ACAGTATTTGCCAAACCATCGTT 59.428 39.130 0.00 0.00 0.00 3.85
4019 4352 3.153919 ACAGTATTTGCCAAACCATCGT 58.846 40.909 0.00 0.00 0.00 3.73
4052 4385 0.399806 ATGGGTTGGTTGGTTGCCTT 60.400 50.000 0.00 0.00 0.00 4.35
4125 4540 3.089284 GCCCTGTTTGGTAGCAAAGTAT 58.911 45.455 19.87 0.00 0.00 2.12
4225 4641 3.307906 TCGACAAGTCCCCCACCG 61.308 66.667 0.00 0.00 0.00 4.94
4547 4963 1.013005 CACGCAGACTCTTCCAGCAG 61.013 60.000 0.00 0.00 0.00 4.24
4762 5191 6.113639 CGAAATCGAAAAACAGAAAAACTGC 58.886 36.000 0.00 0.00 45.29 4.40
4763 5192 7.204737 ACGAAATCGAAAAACAGAAAAACTG 57.795 32.000 10.16 0.00 46.12 3.16
4785 5367 4.209112 GGCAAAAAGAAACGACTTAGACG 58.791 43.478 2.24 2.24 0.00 4.18
4791 5373 2.357952 GACTGGGCAAAAAGAAACGACT 59.642 45.455 0.00 0.00 0.00 4.18
4825 5407 0.952010 GCCCGGAGTGAAAAACGCTA 60.952 55.000 0.73 0.00 39.64 4.26
4826 5408 2.258726 GCCCGGAGTGAAAAACGCT 61.259 57.895 0.73 0.00 42.47 5.07
4827 5409 2.183858 GAGCCCGGAGTGAAAAACGC 62.184 60.000 0.73 0.00 0.00 4.84
4828 5410 0.882927 TGAGCCCGGAGTGAAAAACG 60.883 55.000 0.73 0.00 0.00 3.60
4829 5411 0.875059 CTGAGCCCGGAGTGAAAAAC 59.125 55.000 0.73 0.00 0.00 2.43
4830 5412 0.889186 GCTGAGCCCGGAGTGAAAAA 60.889 55.000 0.73 0.00 0.00 1.94
4831 5413 1.302511 GCTGAGCCCGGAGTGAAAA 60.303 57.895 0.73 0.00 0.00 2.29
4832 5414 2.347490 GCTGAGCCCGGAGTGAAA 59.653 61.111 0.73 0.00 0.00 2.69
4833 5415 3.706373 GGCTGAGCCCGGAGTGAA 61.706 66.667 13.77 0.00 44.06 3.18
4861 5452 9.565213 CCTGAATCAACAATTAAAAGAGTCATC 57.435 33.333 0.00 0.00 33.61 2.92
4921 5512 1.321148 CACGCTGGCGCAAAATAATTG 59.679 47.619 10.83 0.00 44.19 2.32
4932 5523 2.813908 GTTAGGGACACGCTGGCG 60.814 66.667 13.56 13.56 46.03 5.69
4970 5561 3.728373 GATGGGCTTGGGGACGGT 61.728 66.667 0.00 0.00 0.00 4.83
4972 5563 4.856801 CCGATGGGCTTGGGGACG 62.857 72.222 0.00 0.00 0.00 4.79
4983 8627 1.999634 AAATCCTGGAGGGCCGATGG 62.000 60.000 1.52 0.00 36.79 3.51
5030 8674 4.557301 GCGGTTGATTATTTGTTACTGTGC 59.443 41.667 0.00 0.00 0.00 4.57
5043 8687 2.265467 GAGGGCTGGGCGGTTGATTA 62.265 60.000 0.00 0.00 0.00 1.75
5055 8699 4.767892 AGGGGAAGGGGAGGGCTG 62.768 72.222 0.00 0.00 0.00 4.85
5063 8707 0.640495 TGTAGTAGGGAGGGGAAGGG 59.360 60.000 0.00 0.00 0.00 3.95
5102 8747 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5104 8749 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5105 8750 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5106 8751 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5107 8752 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5108 8753 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5109 8754 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5110 8755 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
5111 8756 2.517935 CAATGTGTGTGTGTGTGTGTG 58.482 47.619 0.00 0.00 0.00 3.82
5112 8757 1.135431 GCAATGTGTGTGTGTGTGTGT 60.135 47.619 0.00 0.00 0.00 3.72
5113 8758 1.135460 TGCAATGTGTGTGTGTGTGTG 60.135 47.619 0.00 0.00 0.00 3.82
5114 8759 1.172175 TGCAATGTGTGTGTGTGTGT 58.828 45.000 0.00 0.00 0.00 3.72
5115 8760 2.495409 ATGCAATGTGTGTGTGTGTG 57.505 45.000 0.00 0.00 0.00 3.82
5116 8761 3.631686 AGTAATGCAATGTGTGTGTGTGT 59.368 39.130 0.00 0.00 0.00 3.72
5117 8762 3.976306 CAGTAATGCAATGTGTGTGTGTG 59.024 43.478 0.00 0.00 0.00 3.82
5118 8763 3.882288 TCAGTAATGCAATGTGTGTGTGT 59.118 39.130 0.00 0.00 0.00 3.72
5119 8764 4.486574 TCAGTAATGCAATGTGTGTGTG 57.513 40.909 0.00 0.00 0.00 3.82
5120 8765 5.512753 TTTCAGTAATGCAATGTGTGTGT 57.487 34.783 0.00 0.00 0.00 3.72
5121 8766 6.825284 TTTTTCAGTAATGCAATGTGTGTG 57.175 33.333 0.00 0.00 0.00 3.82
5122 8767 7.410800 CATTTTTCAGTAATGCAATGTGTGT 57.589 32.000 0.00 0.00 0.00 3.72
5155 8800 8.783833 TCATTCTCTCTTACCATTTTCTTCAG 57.216 34.615 0.00 0.00 0.00 3.02
5167 8812 6.036953 CCATTTCAGTGCTCATTCTCTCTTAC 59.963 42.308 0.00 0.00 0.00 2.34
5169 8814 4.942483 CCATTTCAGTGCTCATTCTCTCTT 59.058 41.667 0.00 0.00 0.00 2.85
5253 8898 2.812011 GACACCACAAGAACATACCCAC 59.188 50.000 0.00 0.00 0.00 4.61
5305 8950 7.903431 GCTATTTGTACACTTAAGAAATCCGTG 59.097 37.037 10.09 0.00 0.00 4.94
5306 8951 7.201496 CGCTATTTGTACACTTAAGAAATCCGT 60.201 37.037 10.09 0.00 0.00 4.69
5307 8952 7.117454 CGCTATTTGTACACTTAAGAAATCCG 58.883 38.462 10.09 7.17 0.00 4.18
5308 8953 7.279313 TCCGCTATTTGTACACTTAAGAAATCC 59.721 37.037 10.09 0.00 0.00 3.01
5309 8954 8.193250 TCCGCTATTTGTACACTTAAGAAATC 57.807 34.615 10.09 0.00 0.00 2.17
5310 8955 7.280205 CCTCCGCTATTTGTACACTTAAGAAAT 59.720 37.037 10.09 6.87 0.00 2.17
5311 8956 6.592607 CCTCCGCTATTTGTACACTTAAGAAA 59.407 38.462 10.09 0.00 0.00 2.52
5312 8957 6.071221 TCCTCCGCTATTTGTACACTTAAGAA 60.071 38.462 10.09 0.00 0.00 2.52
5313 8958 5.419788 TCCTCCGCTATTTGTACACTTAAGA 59.580 40.000 10.09 0.00 0.00 2.10
5314 8959 5.657474 TCCTCCGCTATTTGTACACTTAAG 58.343 41.667 0.00 0.00 0.00 1.85
5315 8960 5.394883 CCTCCTCCGCTATTTGTACACTTAA 60.395 44.000 0.00 0.00 0.00 1.85
5316 8961 4.098960 CCTCCTCCGCTATTTGTACACTTA 59.901 45.833 0.00 0.00 0.00 2.24
5317 8962 3.118738 CCTCCTCCGCTATTTGTACACTT 60.119 47.826 0.00 0.00 0.00 3.16
5318 8963 2.431057 CCTCCTCCGCTATTTGTACACT 59.569 50.000 0.00 0.00 0.00 3.55
5319 8964 2.429610 TCCTCCTCCGCTATTTGTACAC 59.570 50.000 0.00 0.00 0.00 2.90
5320 8965 2.693591 CTCCTCCTCCGCTATTTGTACA 59.306 50.000 0.00 0.00 0.00 2.90
5321 8966 2.036089 CCTCCTCCTCCGCTATTTGTAC 59.964 54.545 0.00 0.00 0.00 2.90
5322 8967 2.317040 CCTCCTCCTCCGCTATTTGTA 58.683 52.381 0.00 0.00 0.00 2.41
5323 8968 1.123928 CCTCCTCCTCCGCTATTTGT 58.876 55.000 0.00 0.00 0.00 2.83
5324 8969 0.394565 CCCTCCTCCTCCGCTATTTG 59.605 60.000 0.00 0.00 0.00 2.32
5325 8970 0.264955 TCCCTCCTCCTCCGCTATTT 59.735 55.000 0.00 0.00 0.00 1.40
5326 8971 0.264955 TTCCCTCCTCCTCCGCTATT 59.735 55.000 0.00 0.00 0.00 1.73
5327 8972 0.178947 CTTCCCTCCTCCTCCGCTAT 60.179 60.000 0.00 0.00 0.00 2.97
5328 8973 1.230497 CTTCCCTCCTCCTCCGCTA 59.770 63.158 0.00 0.00 0.00 4.26
5329 8974 2.042435 CTTCCCTCCTCCTCCGCT 60.042 66.667 0.00 0.00 0.00 5.52
5330 8975 3.157949 CCTTCCCTCCTCCTCCGC 61.158 72.222 0.00 0.00 0.00 5.54
5331 8976 2.444895 CCCTTCCCTCCTCCTCCG 60.445 72.222 0.00 0.00 0.00 4.63
5332 8977 1.074850 CTCCCTTCCCTCCTCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
5333 8978 0.043485 AACTCCCTTCCCTCCTCCTC 59.957 60.000 0.00 0.00 0.00 3.71
5334 8979 0.498685 AAACTCCCTTCCCTCCTCCT 59.501 55.000 0.00 0.00 0.00 3.69
5335 8980 0.621082 CAAACTCCCTTCCCTCCTCC 59.379 60.000 0.00 0.00 0.00 4.30
5336 8981 1.657804 TCAAACTCCCTTCCCTCCTC 58.342 55.000 0.00 0.00 0.00 3.71
5337 8982 2.133858 TTCAAACTCCCTTCCCTCCT 57.866 50.000 0.00 0.00 0.00 3.69
5338 8983 2.971901 TTTCAAACTCCCTTCCCTCC 57.028 50.000 0.00 0.00 0.00 4.30
5339 8984 3.767711 ACATTTCAAACTCCCTTCCCTC 58.232 45.455 0.00 0.00 0.00 4.30
5340 8985 3.903530 ACATTTCAAACTCCCTTCCCT 57.096 42.857 0.00 0.00 0.00 4.20
5341 8986 4.402474 CCATACATTTCAAACTCCCTTCCC 59.598 45.833 0.00 0.00 0.00 3.97
5342 8987 5.016831 ACCATACATTTCAAACTCCCTTCC 58.983 41.667 0.00 0.00 0.00 3.46
5343 8988 5.946377 AGACCATACATTTCAAACTCCCTTC 59.054 40.000 0.00 0.00 0.00 3.46
5344 8989 5.711976 CAGACCATACATTTCAAACTCCCTT 59.288 40.000 0.00 0.00 0.00 3.95
5345 8990 5.256474 CAGACCATACATTTCAAACTCCCT 58.744 41.667 0.00 0.00 0.00 4.20
5346 8991 4.399303 CCAGACCATACATTTCAAACTCCC 59.601 45.833 0.00 0.00 0.00 4.30
5347 8992 4.142381 GCCAGACCATACATTTCAAACTCC 60.142 45.833 0.00 0.00 0.00 3.85
5348 8993 4.437390 CGCCAGACCATACATTTCAAACTC 60.437 45.833 0.00 0.00 0.00 3.01
5349 8994 3.440173 CGCCAGACCATACATTTCAAACT 59.560 43.478 0.00 0.00 0.00 2.66
5350 8995 3.438781 TCGCCAGACCATACATTTCAAAC 59.561 43.478 0.00 0.00 0.00 2.93
5351 8996 3.438781 GTCGCCAGACCATACATTTCAAA 59.561 43.478 0.00 0.00 41.41 2.69
5352 8997 3.006940 GTCGCCAGACCATACATTTCAA 58.993 45.455 0.00 0.00 41.41 2.69
5353 8998 2.627945 GTCGCCAGACCATACATTTCA 58.372 47.619 0.00 0.00 41.41 2.69
5365 9010 2.370281 CTCTAAAGCAAGTCGCCAGA 57.630 50.000 0.00 0.00 44.04 3.86
5377 9022 2.545532 CGAGGCTGGAGATGCTCTAAAG 60.546 54.545 0.00 0.00 0.00 1.85
5378 9023 1.410517 CGAGGCTGGAGATGCTCTAAA 59.589 52.381 0.00 0.00 0.00 1.85
5379 9024 1.035923 CGAGGCTGGAGATGCTCTAA 58.964 55.000 0.00 0.00 0.00 2.10
5380 9025 1.459455 GCGAGGCTGGAGATGCTCTA 61.459 60.000 0.00 0.00 0.00 2.43
5381 9026 2.795110 GCGAGGCTGGAGATGCTCT 61.795 63.158 0.00 0.00 0.00 4.09
5382 9027 2.280052 GCGAGGCTGGAGATGCTC 60.280 66.667 0.00 0.00 0.00 4.26
5383 9028 3.859414 GGCGAGGCTGGAGATGCT 61.859 66.667 0.00 0.00 0.00 3.79
5384 9029 4.925861 GGGCGAGGCTGGAGATGC 62.926 72.222 0.00 0.00 0.00 3.91
5385 9030 4.247380 GGGGCGAGGCTGGAGATG 62.247 72.222 0.00 0.00 0.00 2.90
5386 9031 2.605535 TTAGGGGCGAGGCTGGAGAT 62.606 60.000 0.00 0.00 0.00 2.75
5387 9032 3.311511 TTAGGGGCGAGGCTGGAGA 62.312 63.158 0.00 0.00 0.00 3.71
5388 9033 2.764128 TTAGGGGCGAGGCTGGAG 60.764 66.667 0.00 0.00 0.00 3.86
5389 9034 3.081409 GTTAGGGGCGAGGCTGGA 61.081 66.667 0.00 0.00 0.00 3.86
5390 9035 3.391665 CTGTTAGGGGCGAGGCTGG 62.392 68.421 0.00 0.00 0.00 4.85
5391 9036 2.187946 CTGTTAGGGGCGAGGCTG 59.812 66.667 0.00 0.00 0.00 4.85
5392 9037 3.083997 CCTGTTAGGGGCGAGGCT 61.084 66.667 0.00 0.00 0.00 4.58
5393 9038 4.858680 GCCTGTTAGGGGCGAGGC 62.859 72.222 0.00 0.00 44.10 4.70
5399 9044 1.000359 CTTTGGGGCCTGTTAGGGG 60.000 63.158 0.84 0.00 35.37 4.79
5400 9045 1.000359 CCTTTGGGGCCTGTTAGGG 60.000 63.158 0.84 0.00 35.37 3.53
5401 9046 0.323451 GACCTTTGGGGCCTGTTAGG 60.323 60.000 0.84 7.83 39.10 2.69
5402 9047 3.266240 GACCTTTGGGGCCTGTTAG 57.734 57.895 0.84 0.00 39.10 2.34
5409 9054 0.702316 TAAGAAGGGACCTTTGGGGC 59.298 55.000 4.89 0.00 40.80 5.80
5410 9055 1.341089 GCTAAGAAGGGACCTTTGGGG 60.341 57.143 4.89 0.00 36.26 4.96
5411 9056 1.679032 CGCTAAGAAGGGACCTTTGGG 60.679 57.143 4.89 1.99 37.88 4.12
5412 9057 1.003233 ACGCTAAGAAGGGACCTTTGG 59.997 52.381 4.89 0.00 38.96 3.28
5413 9058 2.347731 GACGCTAAGAAGGGACCTTTG 58.652 52.381 4.89 0.00 38.96 2.77
5414 9059 1.067071 CGACGCTAAGAAGGGACCTTT 60.067 52.381 4.89 0.00 38.96 3.11
5415 9060 0.531200 CGACGCTAAGAAGGGACCTT 59.469 55.000 2.65 2.65 38.96 3.50
5416 9061 1.321074 CCGACGCTAAGAAGGGACCT 61.321 60.000 0.00 0.00 38.96 3.85
5417 9062 1.141234 CCGACGCTAAGAAGGGACC 59.859 63.158 0.00 0.00 38.96 4.46
5418 9063 0.458025 CACCGACGCTAAGAAGGGAC 60.458 60.000 0.00 0.00 38.96 4.46
5419 9064 1.888018 CACCGACGCTAAGAAGGGA 59.112 57.895 0.00 0.00 38.96 4.20
5420 9065 1.810030 GCACCGACGCTAAGAAGGG 60.810 63.158 0.00 0.00 41.33 3.95
5421 9066 0.454600 TAGCACCGACGCTAAGAAGG 59.545 55.000 3.59 0.00 41.47 3.46
5422 9067 2.273370 TTAGCACCGACGCTAAGAAG 57.727 50.000 12.67 0.00 46.80 2.85
5427 9072 1.673626 CCCTTTTTAGCACCGACGCTA 60.674 52.381 2.07 2.07 43.56 4.26
5428 9073 0.953960 CCCTTTTTAGCACCGACGCT 60.954 55.000 3.97 3.97 46.26 5.07
5429 9074 1.500396 CCCTTTTTAGCACCGACGC 59.500 57.895 0.00 0.00 0.00 5.19
5430 9075 0.604511 ACCCCTTTTTAGCACCGACG 60.605 55.000 0.00 0.00 0.00 5.12
5431 9076 1.162698 GACCCCTTTTTAGCACCGAC 58.837 55.000 0.00 0.00 0.00 4.79
5432 9077 0.037160 GGACCCCTTTTTAGCACCGA 59.963 55.000 0.00 0.00 0.00 4.69
5433 9078 0.250989 TGGACCCCTTTTTAGCACCG 60.251 55.000 0.00 0.00 0.00 4.94
5434 9079 1.074889 TCTGGACCCCTTTTTAGCACC 59.925 52.381 0.00 0.00 0.00 5.01
5435 9080 2.160205 GTCTGGACCCCTTTTTAGCAC 58.840 52.381 0.00 0.00 0.00 4.40
5436 9081 2.039879 GAGTCTGGACCCCTTTTTAGCA 59.960 50.000 0.00 0.00 0.00 3.49
5437 9082 2.712709 GAGTCTGGACCCCTTTTTAGC 58.287 52.381 0.00 0.00 0.00 3.09
5438 9083 2.302157 ACGAGTCTGGACCCCTTTTTAG 59.698 50.000 0.00 0.00 0.00 1.85
5439 9084 2.301009 GACGAGTCTGGACCCCTTTTTA 59.699 50.000 0.00 0.00 0.00 1.52
5440 9085 1.071857 GACGAGTCTGGACCCCTTTTT 59.928 52.381 0.00 0.00 0.00 1.94
5441 9086 0.685660 GACGAGTCTGGACCCCTTTT 59.314 55.000 0.00 0.00 0.00 2.27
5442 9087 1.192803 GGACGAGTCTGGACCCCTTT 61.193 60.000 3.09 0.00 0.00 3.11
5443 9088 1.609794 GGACGAGTCTGGACCCCTT 60.610 63.158 3.09 0.00 0.00 3.95
5444 9089 2.037527 GGACGAGTCTGGACCCCT 59.962 66.667 3.09 0.00 0.00 4.79
5445 9090 2.037527 AGGACGAGTCTGGACCCC 59.962 66.667 3.09 0.00 0.00 4.95
5446 9091 1.304217 TGAGGACGAGTCTGGACCC 60.304 63.158 3.09 0.00 0.00 4.46
5447 9092 0.322636 TCTGAGGACGAGTCTGGACC 60.323 60.000 3.09 0.00 0.00 4.46
5448 9093 1.470890 CTTCTGAGGACGAGTCTGGAC 59.529 57.143 3.09 0.00 0.00 4.02
5449 9094 1.827681 CTTCTGAGGACGAGTCTGGA 58.172 55.000 3.09 0.00 0.00 3.86
5450 9095 0.172352 GCTTCTGAGGACGAGTCTGG 59.828 60.000 3.09 0.00 0.00 3.86
5451 9096 0.172352 GGCTTCTGAGGACGAGTCTG 59.828 60.000 3.09 0.00 0.00 3.51
5452 9097 0.968393 GGGCTTCTGAGGACGAGTCT 60.968 60.000 3.09 0.00 0.00 3.24
5453 9098 1.251527 TGGGCTTCTGAGGACGAGTC 61.252 60.000 0.00 0.00 0.00 3.36
5454 9099 0.616111 ATGGGCTTCTGAGGACGAGT 60.616 55.000 0.00 0.00 0.00 4.18
5455 9100 0.539051 AATGGGCTTCTGAGGACGAG 59.461 55.000 0.00 0.00 0.00 4.18
5456 9101 0.984230 AAATGGGCTTCTGAGGACGA 59.016 50.000 0.00 0.00 0.00 4.20
5457 9102 1.826385 AAAATGGGCTTCTGAGGACG 58.174 50.000 0.00 0.00 0.00 4.79
5458 9103 2.162408 CGAAAAATGGGCTTCTGAGGAC 59.838 50.000 0.00 0.00 0.00 3.85
5459 9104 2.436417 CGAAAAATGGGCTTCTGAGGA 58.564 47.619 0.00 0.00 0.00 3.71
5460 9105 1.135286 GCGAAAAATGGGCTTCTGAGG 60.135 52.381 0.00 0.00 0.00 3.86
5461 9106 1.135286 GGCGAAAAATGGGCTTCTGAG 60.135 52.381 0.00 0.00 0.00 3.35
5462 9107 0.887933 GGCGAAAAATGGGCTTCTGA 59.112 50.000 0.00 0.00 0.00 3.27
5463 9108 0.456653 CGGCGAAAAATGGGCTTCTG 60.457 55.000 0.00 0.00 0.00 3.02
5464 9109 1.595093 CCGGCGAAAAATGGGCTTCT 61.595 55.000 9.30 0.00 0.00 2.85
5465 9110 1.153842 CCGGCGAAAAATGGGCTTC 60.154 57.895 9.30 0.00 0.00 3.86
5466 9111 1.468506 AACCGGCGAAAAATGGGCTT 61.469 50.000 9.30 0.00 0.00 4.35
5467 9112 0.609681 TAACCGGCGAAAAATGGGCT 60.610 50.000 9.30 0.00 0.00 5.19
5468 9113 0.179148 CTAACCGGCGAAAAATGGGC 60.179 55.000 9.30 0.00 0.00 5.36
5469 9114 0.454196 CCTAACCGGCGAAAAATGGG 59.546 55.000 9.30 0.00 0.00 4.00
5480 9125 1.102978 CCAATTTCAGGCCTAACCGG 58.897 55.000 3.98 0.00 46.52 5.28
5481 9126 0.455815 GCCAATTTCAGGCCTAACCG 59.544 55.000 3.98 0.00 46.50 4.44
5489 9134 3.061848 ACCGGCGCCAATTTCAGG 61.062 61.111 28.98 19.79 0.00 3.86
5490 9135 2.179018 CACCGGCGCCAATTTCAG 59.821 61.111 28.98 7.87 0.00 3.02
5491 9136 3.369400 CCACCGGCGCCAATTTCA 61.369 61.111 28.98 0.00 0.00 2.69
5492 9137 3.059386 TCCACCGGCGCCAATTTC 61.059 61.111 28.98 0.00 0.00 2.17
5493 9138 3.370231 GTCCACCGGCGCCAATTT 61.370 61.111 28.98 3.35 0.00 1.82
5503 9148 3.636231 TTCAGCCTGGGTCCACCG 61.636 66.667 0.00 0.00 44.64 4.94
5504 9149 2.034221 GTTCAGCCTGGGTCCACC 59.966 66.667 0.00 0.00 40.81 4.61
5505 9150 1.003233 GAGTTCAGCCTGGGTCCAC 60.003 63.158 0.00 0.00 0.00 4.02
5506 9151 2.583441 CGAGTTCAGCCTGGGTCCA 61.583 63.158 0.00 0.00 0.00 4.02
5507 9152 2.266055 CGAGTTCAGCCTGGGTCC 59.734 66.667 0.00 0.00 0.00 4.46
5508 9153 2.266055 CCGAGTTCAGCCTGGGTC 59.734 66.667 0.00 0.00 0.00 4.46
5509 9154 4.021925 GCCGAGTTCAGCCTGGGT 62.022 66.667 0.00 0.00 33.24 4.51
5535 9180 3.837570 AAACACTTCCCCCGGCGTC 62.838 63.158 6.01 0.00 0.00 5.19
5536 9181 2.914756 AAAAACACTTCCCCCGGCGT 62.915 55.000 6.01 0.00 0.00 5.68
5537 9182 2.197605 AAAAACACTTCCCCCGGCG 61.198 57.895 0.00 0.00 0.00 6.46
5538 9183 1.365999 CAAAAACACTTCCCCCGGC 59.634 57.895 0.00 0.00 0.00 6.13
5539 9184 2.046108 CCAAAAACACTTCCCCCGG 58.954 57.895 0.00 0.00 0.00 5.73
5540 9185 1.365999 GCCAAAAACACTTCCCCCG 59.634 57.895 0.00 0.00 0.00 5.73
5541 9186 1.365999 CGCCAAAAACACTTCCCCC 59.634 57.895 0.00 0.00 0.00 5.40
5542 9187 1.300620 GCGCCAAAAACACTTCCCC 60.301 57.895 0.00 0.00 0.00 4.81
5543 9188 1.660264 CGCGCCAAAAACACTTCCC 60.660 57.895 0.00 0.00 0.00 3.97
5544 9189 0.248702 TTCGCGCCAAAAACACTTCC 60.249 50.000 0.00 0.00 0.00 3.46
5545 9190 1.516864 CTTTCGCGCCAAAAACACTTC 59.483 47.619 0.00 0.00 0.00 3.01
5546 9191 1.555477 CTTTCGCGCCAAAAACACTT 58.445 45.000 0.00 0.00 0.00 3.16
5547 9192 0.869880 GCTTTCGCGCCAAAAACACT 60.870 50.000 0.00 0.00 0.00 3.55
5548 9193 1.557907 GCTTTCGCGCCAAAAACAC 59.442 52.632 0.00 0.00 0.00 3.32
5549 9194 4.005032 GCTTTCGCGCCAAAAACA 57.995 50.000 0.00 0.00 0.00 2.83
5575 9220 4.436998 GGTCACTGACTCGGCGGG 62.437 72.222 4.58 4.58 32.47 6.13
5576 9221 3.633094 CTGGTCACTGACTCGGCGG 62.633 68.421 7.21 0.00 32.47 6.13
5577 9222 2.126307 CTGGTCACTGACTCGGCG 60.126 66.667 9.08 0.00 32.47 6.46
5578 9223 2.433318 GCTGGTCACTGACTCGGC 60.433 66.667 9.08 11.27 32.47 5.54
5579 9224 2.262915 GGCTGGTCACTGACTCGG 59.737 66.667 9.08 5.79 32.47 4.63
5580 9225 2.126307 CGGCTGGTCACTGACTCG 60.126 66.667 9.08 5.12 32.47 4.18
5581 9226 2.433318 GCGGCTGGTCACTGACTC 60.433 66.667 9.08 0.61 32.47 3.36
5582 9227 2.513026 GATGCGGCTGGTCACTGACT 62.513 60.000 9.08 0.00 32.47 3.41
5583 9228 2.046892 ATGCGGCTGGTCACTGAC 60.047 61.111 0.00 0.00 0.00 3.51
5584 9229 2.230994 GAGATGCGGCTGGTCACTGA 62.231 60.000 0.00 0.00 0.00 3.41
5585 9230 1.812922 GAGATGCGGCTGGTCACTG 60.813 63.158 0.00 0.00 0.00 3.66
5586 9231 2.581354 GAGATGCGGCTGGTCACT 59.419 61.111 0.00 0.00 0.00 3.41
5587 9232 2.887568 CGAGATGCGGCTGGTCAC 60.888 66.667 0.00 0.00 36.03 3.67
5588 9233 3.381983 ACGAGATGCGGCTGGTCA 61.382 61.111 0.00 0.00 46.49 4.02
5595 9240 2.123342 GATGAAGAAGACGAGATGCGG 58.877 52.381 0.00 0.00 46.49 5.69
5597 9242 2.786578 GACGATGAAGAAGACGAGATGC 59.213 50.000 0.00 0.00 0.00 3.91
5598 9243 4.278858 GAGACGATGAAGAAGACGAGATG 58.721 47.826 0.00 0.00 0.00 2.90
5599 9244 3.001838 CGAGACGATGAAGAAGACGAGAT 59.998 47.826 0.00 0.00 0.00 2.75
5600 9245 2.348971 CGAGACGATGAAGAAGACGAGA 59.651 50.000 0.00 0.00 0.00 4.04
5601 9246 2.094575 ACGAGACGATGAAGAAGACGAG 59.905 50.000 0.00 0.00 0.00 4.18
5602 9247 2.074576 ACGAGACGATGAAGAAGACGA 58.925 47.619 0.00 0.00 0.00 4.20
5603 9248 2.529136 ACGAGACGATGAAGAAGACG 57.471 50.000 0.00 0.00 0.00 4.18
5604 9249 4.090210 GGAAAACGAGACGATGAAGAAGAC 59.910 45.833 0.00 0.00 0.00 3.01
5605 9250 4.235360 GGAAAACGAGACGATGAAGAAGA 58.765 43.478 0.00 0.00 0.00 2.87
5606 9251 3.368236 GGGAAAACGAGACGATGAAGAAG 59.632 47.826 0.00 0.00 0.00 2.85
5607 9252 3.243941 TGGGAAAACGAGACGATGAAGAA 60.244 43.478 0.00 0.00 0.00 2.52
5608 9253 2.297880 TGGGAAAACGAGACGATGAAGA 59.702 45.455 0.00 0.00 0.00 2.87
5609 9254 2.412089 GTGGGAAAACGAGACGATGAAG 59.588 50.000 0.00 0.00 0.00 3.02
5610 9255 2.409975 GTGGGAAAACGAGACGATGAA 58.590 47.619 0.00 0.00 0.00 2.57
5611 9256 1.667756 CGTGGGAAAACGAGACGATGA 60.668 52.381 0.00 0.00 46.49 2.92
5612 9257 0.713883 CGTGGGAAAACGAGACGATG 59.286 55.000 0.00 0.00 46.49 3.84
5613 9258 0.389426 CCGTGGGAAAACGAGACGAT 60.389 55.000 0.00 0.00 46.49 3.73
5614 9259 1.007038 CCGTGGGAAAACGAGACGA 60.007 57.895 0.00 0.00 46.49 4.20
5615 9260 2.025418 CCCGTGGGAAAACGAGACG 61.025 63.158 0.00 0.00 46.49 4.18
5616 9261 3.961729 CCCGTGGGAAAACGAGAC 58.038 61.111 0.00 0.00 46.49 3.36
5626 9271 2.127232 GGCATTGATTCCCCGTGGG 61.127 63.158 0.00 0.00 46.11 4.61
5627 9272 0.969917 TTGGCATTGATTCCCCGTGG 60.970 55.000 0.00 0.00 0.00 4.94
5628 9273 0.457035 CTTGGCATTGATTCCCCGTG 59.543 55.000 0.00 0.00 0.00 4.94
5629 9274 0.684153 CCTTGGCATTGATTCCCCGT 60.684 55.000 0.00 0.00 0.00 5.28
5630 9275 2.019897 GCCTTGGCATTGATTCCCCG 62.020 60.000 6.79 0.00 0.00 5.73
5631 9276 0.688749 AGCCTTGGCATTGATTCCCC 60.689 55.000 14.54 0.00 0.00 4.81
5632 9277 0.462789 CAGCCTTGGCATTGATTCCC 59.537 55.000 14.54 0.00 0.00 3.97
5633 9278 0.179092 GCAGCCTTGGCATTGATTCC 60.179 55.000 14.54 0.00 0.00 3.01
5634 9279 3.357504 GCAGCCTTGGCATTGATTC 57.642 52.632 14.54 0.00 0.00 2.52
5653 9298 3.976701 AATGGAAGGCTGACCGGCG 62.977 63.158 0.00 0.00 44.22 6.46
5654 9299 2.044946 AATGGAAGGCTGACCGGC 60.045 61.111 0.00 0.00 42.76 6.13
5655 9300 0.107017 ATCAATGGAAGGCTGACCGG 60.107 55.000 0.00 0.00 42.76 5.28
5656 9301 1.672881 GAATCAATGGAAGGCTGACCG 59.327 52.381 6.53 0.00 42.76 4.79
5657 9302 2.027385 GGAATCAATGGAAGGCTGACC 58.973 52.381 4.34 4.34 0.00 4.02
5658 9303 2.948315 GAGGAATCAATGGAAGGCTGAC 59.052 50.000 0.00 0.00 0.00 3.51
5659 9304 2.577563 TGAGGAATCAATGGAAGGCTGA 59.422 45.455 0.00 0.00 0.00 4.26
5660 9305 2.686915 GTGAGGAATCAATGGAAGGCTG 59.313 50.000 0.00 0.00 0.00 4.85
5661 9306 2.681976 CGTGAGGAATCAATGGAAGGCT 60.682 50.000 0.00 0.00 0.00 4.58
5662 9307 1.672881 CGTGAGGAATCAATGGAAGGC 59.327 52.381 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.