Multiple sequence alignment - TraesCS7D01G294300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G294300 chr7D 100.000 7163 0 0 1 7163 366446764 366453926 0.000000e+00 13228.0
1 TraesCS7D01G294300 chr7D 76.744 344 68 11 5193 5530 434148978 434149315 1.590000e-41 182.0
2 TraesCS7D01G294300 chr7D 82.439 205 31 4 6963 7163 262700640 262700437 2.660000e-39 174.0
3 TraesCS7D01G294300 chr7A 93.307 5528 156 86 1331 6712 404470335 404475794 0.000000e+00 7962.0
4 TraesCS7D01G294300 chr7A 89.866 1046 29 25 310 1334 404468724 404469713 0.000000e+00 1273.0
5 TraesCS7D01G294300 chr7A 85.621 306 9 16 1 278 404468097 404468395 9.090000e-74 289.0
6 TraesCS7D01G294300 chr7A 94.406 143 8 0 6711 6853 404475859 404476001 3.360000e-53 220.0
7 TraesCS7D01G294300 chr7B 97.004 2403 42 8 4326 6712 319854727 319852339 0.000000e+00 4012.0
8 TraesCS7D01G294300 chr7B 88.836 1908 60 66 1 1830 319859708 319857876 0.000000e+00 2202.0
9 TraesCS7D01G294300 chr7B 92.362 1558 46 29 2304 3825 319857127 319855607 0.000000e+00 2150.0
10 TraesCS7D01G294300 chr7B 91.743 545 18 12 3818 4338 319855291 319854750 0.000000e+00 732.0
11 TraesCS7D01G294300 chr7B 90.376 426 34 3 6744 7163 319852135 319851711 2.920000e-153 553.0
12 TraesCS7D01G294300 chr7B 95.652 207 7 2 1849 2054 319857826 319857621 1.490000e-86 331.0
13 TraesCS7D01G294300 chr7B 89.179 268 7 8 2064 2319 319857403 319857146 1.500000e-81 315.0
14 TraesCS7D01G294300 chr7B 100.000 34 0 0 6712 6745 319852288 319852255 6.000000e-06 63.9
15 TraesCS7D01G294300 chr2A 84.309 427 60 4 4448 4869 194130025 194129601 1.860000e-110 411.0
16 TraesCS7D01G294300 chr2A 80.676 207 33 5 6963 7163 382277043 382276838 3.460000e-33 154.0
17 TraesCS7D01G294300 chr2B 84.450 418 58 4 4457 4869 236527275 236526860 8.650000e-109 405.0
18 TraesCS7D01G294300 chr2B 83.824 204 28 4 6964 7163 704420931 704420729 9.490000e-44 189.0
19 TraesCS7D01G294300 chr2B 80.583 206 32 7 6963 7163 172162328 172162530 1.240000e-32 152.0
20 TraesCS7D01G294300 chr2B 78.744 207 35 5 6964 7163 49322653 49322857 5.830000e-26 130.0
21 TraesCS7D01G294300 chr2D 84.211 418 59 4 4457 4869 179692156 179691741 4.030000e-107 399.0
22 TraesCS7D01G294300 chr5D 82.322 379 57 7 4457 4830 526880890 526881263 3.220000e-83 320.0
23 TraesCS7D01G294300 chr5D 78.723 376 80 0 4469 4844 115949919 115950294 1.190000e-62 252.0
24 TraesCS7D01G294300 chr5D 71.514 839 214 23 5164 5988 115950677 115951504 1.220000e-47 202.0
25 TraesCS7D01G294300 chr5A 83.529 340 50 4 4494 4830 654079756 654080092 5.390000e-81 313.0
26 TraesCS7D01G294300 chr5A 71.667 840 213 23 5164 5989 122956785 122957613 7.280000e-50 209.0
27 TraesCS7D01G294300 chr5B 81.579 380 58 9 4457 4830 662961806 662962179 3.250000e-78 303.0
28 TraesCS7D01G294300 chr5B 72.024 840 210 23 5164 5989 127504681 127505509 7.230000e-55 226.0
29 TraesCS7D01G294300 chr5B 79.710 207 29 8 6962 7163 313045253 313045055 3.480000e-28 137.0
30 TraesCS7D01G294300 chr5B 83.099 71 10 2 6963 7033 530304245 530304177 6.000000e-06 63.9
31 TraesCS7D01G294300 chr1D 81.100 291 44 9 4492 4775 202568028 202568314 9.350000e-54 222.0
32 TraesCS7D01G294300 chr1D 83.920 199 27 3 6969 7163 222329216 222329019 1.230000e-42 185.0
33 TraesCS7D01G294300 chr4A 83.254 209 26 6 6962 7163 435430636 435430430 4.410000e-42 183.0
34 TraesCS7D01G294300 chr3B 82.482 137 19 2 6991 7122 172518215 172518079 1.630000e-21 115.0
35 TraesCS7D01G294300 chr3B 77.128 188 29 9 6988 7163 379173662 379173847 5.910000e-16 97.1
36 TraesCS7D01G294300 chr3A 77.654 179 28 8 6963 7132 627971501 627971676 1.640000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G294300 chr7D 366446764 366453926 7162 False 13228.0000 13228 100.0000 1 7163 1 chr7D.!!$F1 7162
1 TraesCS7D01G294300 chr7A 404468097 404476001 7904 False 2436.0000 7962 90.8000 1 6853 4 chr7A.!!$F1 6852
2 TraesCS7D01G294300 chr7B 319851711 319859708 7997 True 1294.8625 4012 93.1440 1 7163 8 chr7B.!!$R1 7162
3 TraesCS7D01G294300 chr5D 115949919 115951504 1585 False 227.0000 252 75.1185 4469 5988 2 chr5D.!!$F2 1519
4 TraesCS7D01G294300 chr5A 122956785 122957613 828 False 209.0000 209 71.6670 5164 5989 1 chr5A.!!$F1 825
5 TraesCS7D01G294300 chr5B 127504681 127505509 828 False 226.0000 226 72.0240 5164 5989 1 chr5B.!!$F1 825

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
557 907 0.037046 TGCGGCGAGATGATATGCAT 60.037 50.000 12.98 3.79 40.77 3.96 F
558 908 1.204467 TGCGGCGAGATGATATGCATA 59.796 47.619 12.98 9.27 37.34 3.14 F
1470 2490 0.814010 ACGCCAAGGTTGACAGTCAC 60.814 55.000 1.52 0.00 0.00 3.67 F
2693 4070 1.241165 CACTCATTGACTTGCCAGCA 58.759 50.000 0.00 0.00 0.00 4.41 F
2855 4246 0.171007 CACCCAATCATCGCACCAAC 59.829 55.000 0.00 0.00 0.00 3.77 F
2856 4247 0.251121 ACCCAATCATCGCACCAACA 60.251 50.000 0.00 0.00 0.00 3.33 F
2862 4253 0.251634 TCATCGCACCAACATAGCCA 59.748 50.000 0.00 0.00 0.00 4.75 F
4944 6772 0.108138 CCAAGTACGAGAAGCCTGGG 60.108 60.000 0.00 0.00 0.00 4.45 F
5343 7288 0.839853 AGAGGCTCTTCCAGGTGCTT 60.840 55.000 12.24 0.00 37.29 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1450 2470 0.107410 TGACTGTCAACCTTGGCGTT 60.107 50.000 8.27 0.0 35.00 4.84 R
2200 3515 0.744281 CGGTGGCACCACTTCTTTTT 59.256 50.000 34.11 0.0 45.52 1.94 R
2713 4090 0.107017 AGGGAAGGGCATCATGTTCG 60.107 55.000 0.00 0.0 0.00 3.95 R
4021 5761 0.320421 AACCACCATTCCTCGTCACG 60.320 55.000 0.00 0.0 0.00 4.35 R
4443 6271 1.148273 GTCCAGTGGGTTGTCAGCA 59.852 57.895 9.92 0.0 34.93 4.41 R
4944 6772 1.596477 GGCCATGGTCATCTCGAGC 60.596 63.158 12.68 0.0 42.75 5.03 R
5514 7459 1.672030 CTGCACGATGAAGTGGCCA 60.672 57.895 0.00 0.0 42.09 5.36 R
5952 7900 0.172803 CGAACGGGTAGAGGTGGAAG 59.827 60.000 0.00 0.0 0.00 3.46 R
6209 8164 0.179094 TGTTTCTTGTCGCAGGTCGT 60.179 50.000 0.00 0.0 39.67 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 38 3.285215 GGCGATGCTGCAGGATGG 61.285 66.667 26.69 24.62 35.86 3.51
77 86 1.676967 GCTTCAGCTTGGACTGGGG 60.677 63.158 0.00 0.00 38.26 4.96
126 135 2.964464 TCTTTCAATCAAGGGCAGCAAA 59.036 40.909 0.00 0.00 0.00 3.68
127 136 3.006110 TCTTTCAATCAAGGGCAGCAAAG 59.994 43.478 0.00 0.00 0.00 2.77
131 140 0.893447 ATCAAGGGCAGCAAAGAAGC 59.107 50.000 0.00 0.00 0.00 3.86
163 181 6.555360 TCACAAACCCCACCAAGTTAATTAAT 59.445 34.615 0.31 0.00 0.00 1.40
170 188 9.031537 ACCCCACCAAGTTAATTAATAAAAGAG 57.968 33.333 0.31 0.00 0.00 2.85
226 251 3.157252 ATCGCCACTCATCGCCCT 61.157 61.111 0.00 0.00 0.00 5.19
254 279 1.789523 TATTCTACGCCCAGCTCCTT 58.210 50.000 0.00 0.00 0.00 3.36
260 285 2.664081 CGCCCAGCTCCTTCTCCTT 61.664 63.158 0.00 0.00 0.00 3.36
278 312 6.597562 TCTCCTTCTCCTCTCTGATTAGTAC 58.402 44.000 0.00 0.00 0.00 2.73
395 726 9.503427 GTACTTATGCAAGCGAAAAGATAAAAT 57.497 29.630 0.00 0.00 34.94 1.82
420 763 5.652994 AAACCGGAAATGCAAGCTAATTA 57.347 34.783 9.46 0.00 0.00 1.40
423 766 4.887071 ACCGGAAATGCAAGCTAATTATCA 59.113 37.500 9.46 0.00 0.00 2.15
424 767 5.215160 CCGGAAATGCAAGCTAATTATCAC 58.785 41.667 0.00 0.00 0.00 3.06
425 768 5.009010 CCGGAAATGCAAGCTAATTATCACT 59.991 40.000 0.00 0.00 0.00 3.41
426 769 6.204688 CCGGAAATGCAAGCTAATTATCACTA 59.795 38.462 0.00 0.00 0.00 2.74
428 771 7.041780 CGGAAATGCAAGCTAATTATCACTAGT 60.042 37.037 0.00 0.00 0.00 2.57
429 772 8.624776 GGAAATGCAAGCTAATTATCACTAGTT 58.375 33.333 0.00 0.00 0.00 2.24
433 776 8.792830 TGCAAGCTAATTATCACTAGTTTTCT 57.207 30.769 0.00 0.00 0.00 2.52
434 777 9.231297 TGCAAGCTAATTATCACTAGTTTTCTT 57.769 29.630 0.00 0.00 0.00 2.52
435 778 9.495754 GCAAGCTAATTATCACTAGTTTTCTTG 57.504 33.333 0.00 4.12 0.00 3.02
436 779 9.495754 CAAGCTAATTATCACTAGTTTTCTTGC 57.504 33.333 0.00 0.00 0.00 4.01
437 780 7.910304 AGCTAATTATCACTAGTTTTCTTGCG 58.090 34.615 0.00 0.00 0.00 4.85
438 781 6.629252 GCTAATTATCACTAGTTTTCTTGCGC 59.371 38.462 0.00 0.00 0.00 6.09
439 782 6.494893 AATTATCACTAGTTTTCTTGCGCA 57.505 33.333 5.66 5.66 0.00 6.09
440 783 5.530519 TTATCACTAGTTTTCTTGCGCAG 57.469 39.130 11.31 5.25 0.00 5.18
441 784 2.143122 TCACTAGTTTTCTTGCGCAGG 58.857 47.619 14.22 14.22 0.00 4.85
442 785 1.197721 CACTAGTTTTCTTGCGCAGGG 59.802 52.381 20.24 12.62 0.00 4.45
443 786 1.071699 ACTAGTTTTCTTGCGCAGGGA 59.928 47.619 20.24 8.36 0.00 4.20
530 880 0.824759 CTGGTAGGTAGGTGAGGTGC 59.175 60.000 0.00 0.00 0.00 5.01
555 905 1.630244 GGTGCGGCGAGATGATATGC 61.630 60.000 12.98 0.00 0.00 3.14
556 906 0.945743 GTGCGGCGAGATGATATGCA 60.946 55.000 12.98 0.00 0.00 3.96
557 907 0.037046 TGCGGCGAGATGATATGCAT 60.037 50.000 12.98 3.79 40.77 3.96
558 908 1.204467 TGCGGCGAGATGATATGCATA 59.796 47.619 12.98 9.27 37.34 3.14
821 1173 1.258445 TTTCTCGCACCTCCTCCTCC 61.258 60.000 0.00 0.00 0.00 4.30
822 1174 2.043450 CTCGCACCTCCTCCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
829 1181 2.018086 CCTCCTCCTCCTCCCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
944 1311 1.304381 TGCCTCCCTGCCATTGTTC 60.304 57.895 0.00 0.00 0.00 3.18
946 1313 1.750399 CCTCCCTGCCATTGTTCGG 60.750 63.158 0.00 0.00 0.00 4.30
977 1355 4.506886 CTTGTCGTAAAGGAGAGTGAGT 57.493 45.455 0.00 0.00 0.00 3.41
978 1356 3.917329 TGTCGTAAAGGAGAGTGAGTG 57.083 47.619 0.00 0.00 0.00 3.51
1339 2345 2.071540 GGTACGTGCAACTAAACTCCC 58.928 52.381 5.86 0.00 31.75 4.30
1340 2346 2.289257 GGTACGTGCAACTAAACTCCCT 60.289 50.000 5.86 0.00 31.75 4.20
1341 2347 3.056607 GGTACGTGCAACTAAACTCCCTA 60.057 47.826 5.86 0.00 31.75 3.53
1369 2375 3.973874 CTGCGTCACAGTAACAATTACG 58.026 45.455 0.00 0.00 41.86 3.18
1450 2470 4.870123 AATGATTAAGCCAACAAGCACA 57.130 36.364 0.00 0.00 34.23 4.57
1470 2490 0.814010 ACGCCAAGGTTGACAGTCAC 60.814 55.000 1.52 0.00 0.00 3.67
1624 2675 2.048503 GTGCACGTTAGAGGCGGT 60.049 61.111 0.00 0.00 0.00 5.68
1625 2676 1.666872 GTGCACGTTAGAGGCGGTT 60.667 57.895 0.00 0.00 0.00 4.44
1715 2769 4.201822 GCGCTGGTTCTTCCATTTTACTAG 60.202 45.833 0.00 0.00 46.12 2.57
1721 2775 7.318141 TGGTTCTTCCATTTTACTAGTAGTCG 58.682 38.462 5.96 0.00 41.93 4.18
2046 3141 2.683968 TGTCACTGGAGAAACGTATGC 58.316 47.619 0.00 0.00 0.00 3.14
2047 3142 2.036604 TGTCACTGGAGAAACGTATGCA 59.963 45.455 0.00 0.00 0.00 3.96
2048 3143 3.262420 GTCACTGGAGAAACGTATGCAT 58.738 45.455 3.79 3.79 0.00 3.96
2092 3395 7.897575 ATATGAGATTTTTCGGCATCTAGTC 57.102 36.000 0.00 0.00 29.41 2.59
2093 3396 5.344743 TGAGATTTTTCGGCATCTAGTCT 57.655 39.130 0.00 0.00 29.41 3.24
2094 3397 6.465439 TGAGATTTTTCGGCATCTAGTCTA 57.535 37.500 0.00 0.00 29.41 2.59
2095 3398 6.507900 TGAGATTTTTCGGCATCTAGTCTAG 58.492 40.000 0.00 0.00 29.41 2.43
2096 3399 6.096987 TGAGATTTTTCGGCATCTAGTCTAGT 59.903 38.462 6.77 0.00 29.41 2.57
2097 3400 6.879400 AGATTTTTCGGCATCTAGTCTAGTT 58.121 36.000 6.77 0.00 0.00 2.24
2098 3401 8.008513 AGATTTTTCGGCATCTAGTCTAGTTA 57.991 34.615 6.77 0.00 0.00 2.24
2099 3402 8.643324 AGATTTTTCGGCATCTAGTCTAGTTAT 58.357 33.333 6.77 0.00 0.00 1.89
2100 3403 9.909644 GATTTTTCGGCATCTAGTCTAGTTATA 57.090 33.333 6.77 0.00 0.00 0.98
2101 3404 9.915629 ATTTTTCGGCATCTAGTCTAGTTATAG 57.084 33.333 6.77 0.00 0.00 1.31
2102 3405 8.687292 TTTTCGGCATCTAGTCTAGTTATAGA 57.313 34.615 6.77 0.00 35.61 1.98
2143 3457 7.043920 CGTTAGTTTTTGTTCAGCCGTTTTATT 60.044 33.333 0.00 0.00 0.00 1.40
2171 3486 7.914465 AGAAAACGAGAAGAAGATTATCATGC 58.086 34.615 0.00 0.00 0.00 4.06
2178 3493 7.043524 CGAGAAGAAGATTATCATGCCATATCG 60.044 40.741 0.00 0.00 0.00 2.92
2200 3515 4.399618 CGTGTCATAGAAAGGAGGAGAAGA 59.600 45.833 0.00 0.00 0.00 2.87
2333 3698 2.215812 GCGCGTGCTAGATAAACACTAC 59.784 50.000 15.02 0.00 38.39 2.73
2334 3699 3.692576 CGCGTGCTAGATAAACACTACT 58.307 45.455 0.00 0.00 32.07 2.57
2335 3700 4.787563 GCGCGTGCTAGATAAACACTACTA 60.788 45.833 15.02 0.00 38.39 1.82
2336 3701 4.904724 CGCGTGCTAGATAAACACTACTAG 59.095 45.833 0.00 0.00 36.44 2.57
2377 3742 4.611355 CGGCACAACATCTTCAAAGTACTG 60.611 45.833 0.00 0.00 0.00 2.74
2490 3860 5.720371 TGGCGCCAATAGCATAAATAAAT 57.280 34.783 30.74 0.00 44.04 1.40
2693 4070 1.241165 CACTCATTGACTTGCCAGCA 58.759 50.000 0.00 0.00 0.00 4.41
2713 4090 2.180017 CGCCTTGGCTGTCAATGC 59.820 61.111 11.52 11.52 41.54 3.56
2730 4107 1.031571 TGCGAACATGATGCCCTTCC 61.032 55.000 0.00 0.00 0.00 3.46
2810 4201 5.549742 AATGCAAAGGGAAAAGATGAACA 57.450 34.783 0.00 0.00 0.00 3.18
2848 4239 4.037803 TCCAATAATTGCACCCAATCATCG 59.962 41.667 0.00 0.00 40.69 3.84
2849 4240 3.648339 ATAATTGCACCCAATCATCGC 57.352 42.857 0.00 0.00 40.69 4.58
2850 4241 1.184431 AATTGCACCCAATCATCGCA 58.816 45.000 0.00 0.00 40.69 5.10
2852 4243 1.594194 TTGCACCCAATCATCGCACC 61.594 55.000 0.00 0.00 31.10 5.01
2854 4245 1.594194 GCACCCAATCATCGCACCAA 61.594 55.000 0.00 0.00 0.00 3.67
2855 4246 0.171007 CACCCAATCATCGCACCAAC 59.829 55.000 0.00 0.00 0.00 3.77
2856 4247 0.251121 ACCCAATCATCGCACCAACA 60.251 50.000 0.00 0.00 0.00 3.33
2857 4248 1.105457 CCCAATCATCGCACCAACAT 58.895 50.000 0.00 0.00 0.00 2.71
2858 4249 2.296792 CCCAATCATCGCACCAACATA 58.703 47.619 0.00 0.00 0.00 2.29
2859 4250 2.291465 CCCAATCATCGCACCAACATAG 59.709 50.000 0.00 0.00 0.00 2.23
2860 4251 2.287188 CCAATCATCGCACCAACATAGC 60.287 50.000 0.00 0.00 0.00 2.97
2861 4252 1.597742 ATCATCGCACCAACATAGCC 58.402 50.000 0.00 0.00 0.00 3.93
2862 4253 0.251634 TCATCGCACCAACATAGCCA 59.748 50.000 0.00 0.00 0.00 4.75
2863 4254 0.659427 CATCGCACCAACATAGCCAG 59.341 55.000 0.00 0.00 0.00 4.85
2864 4255 1.097547 ATCGCACCAACATAGCCAGC 61.098 55.000 0.00 0.00 0.00 4.85
2883 4274 4.155826 CCAGCACTCGATTAATCCAAACAA 59.844 41.667 9.87 0.00 0.00 2.83
2889 4280 9.134734 GCACTCGATTAATCCAAACAATTTTTA 57.865 29.630 9.87 0.00 0.00 1.52
3002 4401 2.540515 CTGTTCGTGATCTGGCGTATT 58.459 47.619 0.00 0.00 0.00 1.89
3068 4467 2.342648 GGCGAGTTCTGGTTCGGT 59.657 61.111 0.00 0.00 37.30 4.69
3236 4635 1.383803 GGAGCCCATCCTCTCCACT 60.384 63.158 3.60 0.00 46.24 4.00
3422 4821 2.368011 GGGCCCGGAGAGCTACTTT 61.368 63.158 5.69 0.00 0.00 2.66
3720 5122 9.504708 TCAGTACTAGCTATTCTTATCACTACC 57.495 37.037 0.00 0.00 0.00 3.18
3721 5123 8.444715 CAGTACTAGCTATTCTTATCACTACCG 58.555 40.741 0.00 0.00 0.00 4.02
3722 5124 8.156165 AGTACTAGCTATTCTTATCACTACCGT 58.844 37.037 0.00 0.00 0.00 4.83
3740 5149 6.717084 ACTACCGTTTACTCCTACTTACTGTT 59.283 38.462 0.00 0.00 0.00 3.16
3753 5162 9.018582 TCCTACTTACTGTTTCTTTCCTACTAC 57.981 37.037 0.00 0.00 0.00 2.73
3757 5166 8.648693 ACTTACTGTTTCTTTCCTACTACATGT 58.351 33.333 2.69 2.69 0.00 3.21
3759 5168 7.304497 ACTGTTTCTTTCCTACTACATGTCT 57.696 36.000 0.00 0.00 0.00 3.41
3760 5169 7.155328 ACTGTTTCTTTCCTACTACATGTCTG 58.845 38.462 0.00 0.00 0.00 3.51
3761 5170 5.932303 TGTTTCTTTCCTACTACATGTCTGC 59.068 40.000 0.00 0.00 0.00 4.26
3762 5171 5.738619 TTCTTTCCTACTACATGTCTGCA 57.261 39.130 0.00 0.00 0.00 4.41
3763 5172 5.939764 TCTTTCCTACTACATGTCTGCAT 57.060 39.130 0.00 0.00 35.32 3.96
3808 5220 5.497474 TCTTGGAATCTTGGTTAGTTAGGC 58.503 41.667 0.00 0.00 0.00 3.93
3950 5689 1.265095 CACACTTGTGGACAGACATGC 59.735 52.381 5.72 0.00 42.10 4.06
3968 5707 2.679450 TGCAAGAAAACATGCATGCTC 58.321 42.857 26.53 19.05 46.87 4.26
3979 5718 2.236382 GCATGCTCCTCTTCTCGCG 61.236 63.158 11.37 0.00 0.00 5.87
4021 5761 1.474077 GTGGTTCCACTCATTCATGCC 59.526 52.381 13.97 0.00 34.42 4.40
4172 5919 4.105577 TGCCCAACTCTTAACCCTGTATA 58.894 43.478 0.00 0.00 0.00 1.47
4258 6030 9.753674 AAGAATCATTTGACCTTTTACTATGGA 57.246 29.630 0.00 0.00 0.00 3.41
4264 6054 2.866762 GACCTTTTACTATGGAGCAGCG 59.133 50.000 0.00 0.00 0.00 5.18
4941 6769 1.926108 AGACCAAGTACGAGAAGCCT 58.074 50.000 0.00 0.00 0.00 4.58
4944 6772 0.108138 CCAAGTACGAGAAGCCTGGG 60.108 60.000 0.00 0.00 0.00 4.45
5343 7288 0.839853 AGAGGCTCTTCCAGGTGCTT 60.840 55.000 12.24 0.00 37.29 3.91
5514 7459 2.569134 GCGCTCTCCTTCGTCACT 59.431 61.111 0.00 0.00 0.00 3.41
5952 7900 2.550830 TCTTCAACTTCTGGGTGCTC 57.449 50.000 0.00 0.00 31.53 4.26
6204 8159 3.554692 CGCGCATCCGGACAAGAC 61.555 66.667 6.12 0.00 34.32 3.01
6205 8160 2.434185 GCGCATCCGGACAAGACA 60.434 61.111 6.12 0.00 34.32 3.41
6206 8161 2.032634 GCGCATCCGGACAAGACAA 61.033 57.895 6.12 0.00 34.32 3.18
6207 8162 1.787847 CGCATCCGGACAAGACAAC 59.212 57.895 6.12 0.00 0.00 3.32
6208 8163 1.787847 GCATCCGGACAAGACAACG 59.212 57.895 6.12 0.00 0.00 4.10
6209 8164 0.669318 GCATCCGGACAAGACAACGA 60.669 55.000 6.12 0.00 0.00 3.85
6217 8172 0.874607 ACAAGACAACGACGACCTGC 60.875 55.000 0.00 0.00 0.00 4.85
6837 8996 2.737376 GTGGACGTCGGAGTTGGC 60.737 66.667 9.92 0.00 0.00 4.52
6857 9016 0.939577 CGTATCCTCCGCATTCCACG 60.940 60.000 0.00 0.00 0.00 4.94
6885 9044 4.178540 TCGACGGAAAAACACCATCTATC 58.821 43.478 0.00 0.00 0.00 2.08
6890 9049 4.700213 CGGAAAAACACCATCTATCAAGGT 59.300 41.667 0.00 0.00 35.65 3.50
6903 9062 8.156820 CCATCTATCAAGGTATAATTGGTGTCA 58.843 37.037 0.00 0.00 0.00 3.58
6918 9077 7.886629 ATTGGTGTCATGTTCTTATAGCAAT 57.113 32.000 0.00 0.00 32.09 3.56
7017 9176 0.538118 TAAGCGTTACATCCGGCCTT 59.462 50.000 0.00 0.00 0.00 4.35
7019 9178 0.538118 AGCGTTACATCCGGCCTTTA 59.462 50.000 0.00 0.00 0.00 1.85
7020 9179 1.140252 AGCGTTACATCCGGCCTTTAT 59.860 47.619 0.00 0.00 0.00 1.40
7033 9192 7.549147 TCCGGCCTTTATATAACTAAGATGT 57.451 36.000 0.00 0.00 0.00 3.06
7090 9249 4.514781 AAAAGGCGGATTACCAAGAAAC 57.485 40.909 0.00 0.00 35.59 2.78
7110 9275 8.053026 AGAAACATGTAGAGTCTGTATAACGT 57.947 34.615 1.86 0.00 0.00 3.99
7134 9299 1.002624 GCGGAGGTGGGTCAATTCA 60.003 57.895 0.00 0.00 0.00 2.57
7144 9309 4.427312 GTGGGTCAATTCAAAGATCATGC 58.573 43.478 0.00 0.00 0.00 4.06
7146 9311 5.357878 GTGGGTCAATTCAAAGATCATGCTA 59.642 40.000 0.00 0.00 0.00 3.49
7155 9320 4.411869 TCAAAGATCATGCTACCACCCATA 59.588 41.667 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 38 1.946475 GACCCGTGAGTCCCTGTAGC 61.946 65.000 0.00 0.00 0.00 3.58
77 86 1.237285 TTGCGCCTTTTCTGCTCTCC 61.237 55.000 4.18 0.00 0.00 3.71
131 140 1.152567 TGGGGTTTGTGAGCTTGGG 60.153 57.895 0.00 0.00 0.00 4.12
140 149 8.493787 TTATTAATTAACTTGGTGGGGTTTGT 57.506 30.769 0.00 0.00 0.00 2.83
226 251 3.106054 TGGGCGTAGAATAAAGGTACCA 58.894 45.455 15.94 0.00 0.00 3.25
254 279 5.725551 ACTAATCAGAGAGGAGAAGGAGA 57.274 43.478 0.00 0.00 0.00 3.71
367 698 6.743575 ATCTTTTCGCTTGCATAAGTACTT 57.256 33.333 13.68 13.68 36.27 2.24
395 726 5.455056 TTAGCTTGCATTTCCGGTTTTTA 57.545 34.783 0.00 0.00 0.00 1.52
401 734 5.009010 AGTGATAATTAGCTTGCATTTCCGG 59.991 40.000 0.00 0.00 0.00 5.14
420 763 2.744202 CCTGCGCAAGAAAACTAGTGAT 59.256 45.455 13.05 0.00 43.02 3.06
423 766 1.071699 TCCCTGCGCAAGAAAACTAGT 59.928 47.619 13.05 0.00 43.02 2.57
424 767 1.734465 CTCCCTGCGCAAGAAAACTAG 59.266 52.381 13.05 0.00 43.02 2.57
425 768 1.610624 CCTCCCTGCGCAAGAAAACTA 60.611 52.381 13.05 0.00 43.02 2.24
426 769 0.890996 CCTCCCTGCGCAAGAAAACT 60.891 55.000 13.05 0.00 43.02 2.66
428 771 1.603455 CCCTCCCTGCGCAAGAAAA 60.603 57.895 13.05 0.00 43.02 2.29
429 772 2.034066 CCCTCCCTGCGCAAGAAA 59.966 61.111 13.05 0.00 43.02 2.52
430 773 4.033776 CCCCTCCCTGCGCAAGAA 62.034 66.667 13.05 0.00 43.02 2.52
432 775 4.479993 CTCCCCTCCCTGCGCAAG 62.480 72.222 13.05 4.91 43.44 4.01
438 781 4.505970 CCTCCCCTCCCCTCCCTG 62.506 77.778 0.00 0.00 0.00 4.45
442 785 4.523282 ATGCCCTCCCCTCCCCTC 62.523 72.222 0.00 0.00 0.00 4.30
443 786 4.523282 GATGCCCTCCCCTCCCCT 62.523 72.222 0.00 0.00 0.00 4.79
479 825 0.538977 CATATTCCTGCCCCTGCCTG 60.539 60.000 0.00 0.00 36.33 4.85
480 826 0.698886 TCATATTCCTGCCCCTGCCT 60.699 55.000 0.00 0.00 36.33 4.75
481 827 0.251077 CTCATATTCCTGCCCCTGCC 60.251 60.000 0.00 0.00 36.33 4.85
555 905 1.108776 GCCCAGCCCATATGCATATG 58.891 55.000 31.52 31.52 39.80 1.78
556 906 1.005228 AGCCCAGCCCATATGCATAT 58.995 50.000 13.63 13.63 0.00 1.78
557 907 0.038599 CAGCCCAGCCCATATGCATA 59.961 55.000 9.27 9.27 0.00 3.14
558 908 1.228769 CAGCCCAGCCCATATGCAT 60.229 57.895 3.79 3.79 0.00 3.96
654 1005 5.040635 GTCTGTGGGTTGTAATTGTGTTTG 58.959 41.667 0.00 0.00 0.00 2.93
821 1173 1.705450 TAGGGGAGGGAGAGGGGAG 60.705 68.421 0.00 0.00 0.00 4.30
822 1174 2.019272 GTAGGGGAGGGAGAGGGGA 61.019 68.421 0.00 0.00 0.00 4.81
829 1181 3.144068 TGAATGAATGTAGGGGAGGGA 57.856 47.619 0.00 0.00 0.00 4.20
944 1311 0.600255 ACGACAAGGAGAACAAGCCG 60.600 55.000 0.00 0.00 0.00 5.52
946 1313 3.186613 CCTTTACGACAAGGAGAACAAGC 59.813 47.826 10.77 0.00 45.79 4.01
947 1314 4.628074 TCCTTTACGACAAGGAGAACAAG 58.372 43.478 13.90 0.00 46.34 3.16
948 1315 4.675976 TCCTTTACGACAAGGAGAACAA 57.324 40.909 13.90 0.00 46.34 2.83
975 1353 2.029288 CGTCCTCAATGCACGCACT 61.029 57.895 0.00 0.00 0.00 4.40
976 1354 2.027073 TCGTCCTCAATGCACGCAC 61.027 57.895 0.00 0.00 33.46 5.34
977 1355 2.027073 GTCGTCCTCAATGCACGCA 61.027 57.895 0.00 0.00 33.46 5.24
978 1356 2.778679 GTCGTCCTCAATGCACGC 59.221 61.111 0.00 0.00 33.46 5.34
1152 1533 2.173669 GGCCACGATGTCCATGTCG 61.174 63.158 0.00 2.22 43.13 4.35
1405 2425 4.361451 AGACTTGTTGTGCAAAAGAGTG 57.639 40.909 9.68 0.00 36.53 3.51
1450 2470 0.107410 TGACTGTCAACCTTGGCGTT 60.107 50.000 8.27 0.00 35.00 4.84
1470 2490 4.024893 CCACCGGTCAAGATCAAATAATCG 60.025 45.833 2.59 0.00 0.00 3.34
1577 2628 7.229707 TCTCGGACTTGTCAAATTTTAATCCAA 59.770 33.333 3.08 0.00 0.00 3.53
1624 2675 2.945008 GTGGATTCGAGCCATCATTGAA 59.055 45.455 11.61 0.00 37.81 2.69
1625 2676 2.564771 GTGGATTCGAGCCATCATTGA 58.435 47.619 11.61 0.00 37.81 2.57
1715 2769 1.199327 TGCAGCAGTGACTACGACTAC 59.801 52.381 0.00 0.00 0.00 2.73
1721 2775 1.372087 GCCCATGCAGCAGTGACTAC 61.372 60.000 0.00 0.00 37.47 2.73
1808 2862 9.528489 TTAACTCTAAAGTGGCAAGGATTTATT 57.472 29.630 0.00 0.00 35.36 1.40
1984 3075 4.341235 GCTTTTATATCTTGTCCCAACCCC 59.659 45.833 0.00 0.00 0.00 4.95
2092 3395 7.064847 CGTACTACAGGCTCCATCTATAACTAG 59.935 44.444 0.00 0.00 0.00 2.57
2093 3396 6.877855 CGTACTACAGGCTCCATCTATAACTA 59.122 42.308 0.00 0.00 0.00 2.24
2094 3397 5.706369 CGTACTACAGGCTCCATCTATAACT 59.294 44.000 0.00 0.00 0.00 2.24
2095 3398 5.472820 ACGTACTACAGGCTCCATCTATAAC 59.527 44.000 0.00 0.00 0.00 1.89
2096 3399 5.628130 ACGTACTACAGGCTCCATCTATAA 58.372 41.667 0.00 0.00 0.00 0.98
2097 3400 5.238624 ACGTACTACAGGCTCCATCTATA 57.761 43.478 0.00 0.00 0.00 1.31
2098 3401 4.101645 ACGTACTACAGGCTCCATCTAT 57.898 45.455 0.00 0.00 0.00 1.98
2099 3402 3.572632 ACGTACTACAGGCTCCATCTA 57.427 47.619 0.00 0.00 0.00 1.98
2100 3403 2.438800 ACGTACTACAGGCTCCATCT 57.561 50.000 0.00 0.00 0.00 2.90
2101 3404 3.631227 ACTAACGTACTACAGGCTCCATC 59.369 47.826 0.00 0.00 0.00 3.51
2102 3405 3.629087 ACTAACGTACTACAGGCTCCAT 58.371 45.455 0.00 0.00 0.00 3.41
2143 3457 7.611770 TGATAATCTTCTTCTCGTTTTCTCCA 58.388 34.615 0.00 0.00 0.00 3.86
2171 3486 5.243954 TCCTCCTTTCTATGACACGATATGG 59.756 44.000 0.00 0.00 0.00 2.74
2178 3493 5.923733 TCTTCTCCTCCTTTCTATGACAC 57.076 43.478 0.00 0.00 0.00 3.67
2200 3515 0.744281 CGGTGGCACCACTTCTTTTT 59.256 50.000 34.11 0.00 45.52 1.94
2333 3698 3.488678 CGAGTGCACTTGACATATGCTAG 59.511 47.826 27.35 5.03 40.13 3.42
2334 3699 3.447742 CGAGTGCACTTGACATATGCTA 58.552 45.455 27.35 0.00 40.13 3.49
2335 3700 2.274437 CGAGTGCACTTGACATATGCT 58.726 47.619 27.35 0.00 40.13 3.79
2336 3701 1.328680 CCGAGTGCACTTGACATATGC 59.671 52.381 31.88 10.65 39.88 3.14
2337 3702 1.328680 GCCGAGTGCACTTGACATATG 59.671 52.381 31.88 16.63 40.77 1.78
2420 3788 7.504403 TGCTAATCGTTACTACTAGTAGGAGT 58.496 38.462 29.05 19.12 37.49 3.85
2423 3791 6.933521 TCCTGCTAATCGTTACTACTAGTAGG 59.066 42.308 29.05 14.40 41.34 3.18
2576 3949 2.758089 CCTCACCCGTCGTACGAGG 61.758 68.421 26.62 26.62 46.05 4.63
2581 3954 2.044650 CCTCCCTCACCCGTCGTA 60.045 66.667 0.00 0.00 0.00 3.43
2713 4090 0.107017 AGGGAAGGGCATCATGTTCG 60.107 55.000 0.00 0.00 0.00 3.95
2730 4107 0.890683 AAATGCCAAAAGGCGAGAGG 59.109 50.000 1.66 0.00 37.77 3.69
2758 4149 7.676683 TCCCTATCAGACAGCTAGTTTTAAT 57.323 36.000 0.00 0.00 0.00 1.40
2810 4201 2.124151 GGAGGGAACATGCGCCAT 60.124 61.111 4.18 0.00 0.00 4.40
2848 4239 0.962356 AGTGCTGGCTATGTTGGTGC 60.962 55.000 0.00 0.00 0.00 5.01
2849 4240 1.089920 GAGTGCTGGCTATGTTGGTG 58.910 55.000 0.00 0.00 0.00 4.17
2850 4241 0.391661 CGAGTGCTGGCTATGTTGGT 60.392 55.000 0.00 0.00 0.00 3.67
2852 4243 1.945387 ATCGAGTGCTGGCTATGTTG 58.055 50.000 0.00 0.00 0.00 3.33
2854 4245 3.819564 TTAATCGAGTGCTGGCTATGT 57.180 42.857 0.00 0.00 0.00 2.29
2855 4246 3.681897 GGATTAATCGAGTGCTGGCTATG 59.318 47.826 9.32 0.00 0.00 2.23
2856 4247 3.324846 TGGATTAATCGAGTGCTGGCTAT 59.675 43.478 9.32 0.00 0.00 2.97
2857 4248 2.698274 TGGATTAATCGAGTGCTGGCTA 59.302 45.455 9.32 0.00 0.00 3.93
2858 4249 1.486310 TGGATTAATCGAGTGCTGGCT 59.514 47.619 9.32 0.00 0.00 4.75
2859 4250 1.953559 TGGATTAATCGAGTGCTGGC 58.046 50.000 9.32 0.00 0.00 4.85
2860 4251 3.689161 TGTTTGGATTAATCGAGTGCTGG 59.311 43.478 9.32 0.00 0.00 4.85
2861 4252 4.944962 TGTTTGGATTAATCGAGTGCTG 57.055 40.909 9.32 0.00 0.00 4.41
2862 4253 6.515272 AATTGTTTGGATTAATCGAGTGCT 57.485 33.333 9.32 0.00 0.00 4.40
2863 4254 7.581011 AAAATTGTTTGGATTAATCGAGTGC 57.419 32.000 9.32 1.29 0.00 4.40
2889 4280 7.095910 CAGTTCATCATCAACTCACTCTTAGT 58.904 38.462 0.00 0.00 31.40 2.24
2890 4281 7.095910 ACAGTTCATCATCAACTCACTCTTAG 58.904 38.462 0.00 0.00 31.40 2.18
3002 4401 0.107831 CGTCAGGGTTCTTGTGGGAA 59.892 55.000 0.00 0.00 0.00 3.97
3068 4467 0.254178 GATCCAGCAGCCAGGAGAAA 59.746 55.000 9.83 0.00 37.34 2.52
3236 4635 2.343758 GAGAGCACCGAGTTGGCA 59.656 61.111 0.00 0.00 43.94 4.92
3299 4698 0.950555 GCATGCCACTGTCGTCAGAA 60.951 55.000 16.64 0.00 43.76 3.02
3422 4821 2.224159 GGGGTGGGACTTGAGCTCA 61.224 63.158 13.74 13.74 0.00 4.26
3720 5122 8.585189 AAAGAAACAGTAAGTAGGAGTAAACG 57.415 34.615 0.00 0.00 0.00 3.60
3721 5123 8.986847 GGAAAGAAACAGTAAGTAGGAGTAAAC 58.013 37.037 0.00 0.00 0.00 2.01
3722 5124 8.931568 AGGAAAGAAACAGTAAGTAGGAGTAAA 58.068 33.333 0.00 0.00 0.00 2.01
3740 5149 5.738619 TGCAGACATGTAGTAGGAAAGAA 57.261 39.130 0.00 0.00 0.00 2.52
3808 5220 2.368875 AGATGGCCACTAATAACGAGGG 59.631 50.000 8.16 0.00 0.00 4.30
3950 5689 3.192844 AGAGGAGCATGCATGTTTTCTTG 59.807 43.478 26.79 1.63 0.00 3.02
3968 5707 2.100603 GGACGACGCGAGAAGAGG 59.899 66.667 15.93 0.00 0.00 3.69
3979 5718 3.825160 TTGCTGGCCACAGGACGAC 62.825 63.158 0.00 0.00 45.25 4.34
4021 5761 0.320421 AACCACCATTCCTCGTCACG 60.320 55.000 0.00 0.00 0.00 4.35
4258 6030 3.505680 TGACATGGTTAATTTTCGCTGCT 59.494 39.130 0.00 0.00 0.00 4.24
4302 6092 5.954757 AGCATAGGTAGATACAGTAGTGGT 58.045 41.667 1.92 0.00 0.00 4.16
4303 6093 6.004574 TGAGCATAGGTAGATACAGTAGTGG 58.995 44.000 1.92 0.00 0.00 4.00
4305 6095 7.291566 ACTTGAGCATAGGTAGATACAGTAGT 58.708 38.462 0.00 0.00 0.00 2.73
4306 6096 7.753309 ACTTGAGCATAGGTAGATACAGTAG 57.247 40.000 0.00 0.00 0.00 2.57
4307 6097 7.560262 ACAACTTGAGCATAGGTAGATACAGTA 59.440 37.037 0.00 0.00 0.00 2.74
4308 6098 6.381420 ACAACTTGAGCATAGGTAGATACAGT 59.619 38.462 0.00 0.00 0.00 3.55
4309 6099 6.699204 CACAACTTGAGCATAGGTAGATACAG 59.301 42.308 0.00 0.00 0.00 2.74
4310 6100 6.379988 TCACAACTTGAGCATAGGTAGATACA 59.620 38.462 0.00 0.00 0.00 2.29
4311 6101 6.806751 TCACAACTTGAGCATAGGTAGATAC 58.193 40.000 0.00 0.00 0.00 2.24
4322 6112 5.696270 CACTAGTACAATCACAACTTGAGCA 59.304 40.000 0.00 0.00 37.77 4.26
4443 6271 1.148273 GTCCAGTGGGTTGTCAGCA 59.852 57.895 9.92 0.00 34.93 4.41
4941 6769 1.689243 CCATGGTCATCTCGAGCCCA 61.689 60.000 7.81 11.13 41.69 5.36
4944 6772 1.596477 GGCCATGGTCATCTCGAGC 60.596 63.158 12.68 0.00 42.75 5.03
5514 7459 1.672030 CTGCACGATGAAGTGGCCA 60.672 57.895 0.00 0.00 42.09 5.36
5952 7900 0.172803 CGAACGGGTAGAGGTGGAAG 59.827 60.000 0.00 0.00 0.00 3.46
6204 8159 1.876453 CTTGTCGCAGGTCGTCGTTG 61.876 60.000 0.00 0.00 39.67 4.10
6205 8160 1.660575 CTTGTCGCAGGTCGTCGTT 60.661 57.895 0.00 0.00 39.67 3.85
6206 8161 2.050351 CTTGTCGCAGGTCGTCGT 60.050 61.111 0.00 0.00 39.67 4.34
6207 8162 0.937699 TTTCTTGTCGCAGGTCGTCG 60.938 55.000 0.00 0.00 39.67 5.12
6208 8163 0.507358 GTTTCTTGTCGCAGGTCGTC 59.493 55.000 0.00 0.00 39.67 4.20
6209 8164 0.179094 TGTTTCTTGTCGCAGGTCGT 60.179 50.000 0.00 0.00 39.67 4.34
6217 8172 4.035091 TGGATGACTTGTTGTTTCTTGTCG 59.965 41.667 0.00 0.00 0.00 4.35
6515 8474 3.954740 AATACCGCCCTCCACCCCA 62.955 63.158 0.00 0.00 0.00 4.96
6516 8475 3.094498 AATACCGCCCTCCACCCC 61.094 66.667 0.00 0.00 0.00 4.95
6517 8476 1.632965 AAGAATACCGCCCTCCACCC 61.633 60.000 0.00 0.00 0.00 4.61
6518 8477 0.255033 AAAGAATACCGCCCTCCACC 59.745 55.000 0.00 0.00 0.00 4.61
6649 8614 9.303116 TGTTGGACCAAGTAATAATTGTGTATT 57.697 29.630 7.31 0.00 0.00 1.89
6689 8661 6.821665 AGCTCAAGCAATTAGACGGTAAATAA 59.178 34.615 4.59 0.00 45.16 1.40
6837 8996 0.600255 GTGGAATGCGGAGGATACGG 60.600 60.000 0.00 0.00 37.86 4.02
6857 9016 2.220363 GGTGTTTTTCCGTCGAAGAGAC 59.780 50.000 0.00 0.00 46.16 3.36
6885 9044 7.630242 AGAACATGACACCAATTATACCTTG 57.370 36.000 0.00 0.00 0.00 3.61
6903 9062 9.578576 AACCATGATACATTGCTATAAGAACAT 57.421 29.630 0.00 0.00 0.00 2.71
6995 9154 1.944709 GGCCGGATGTAACGCTTAAAT 59.055 47.619 5.05 0.00 0.00 1.40
7073 9232 2.752903 ACATGTTTCTTGGTAATCCGCC 59.247 45.455 0.00 0.00 36.30 6.13
7074 9233 4.873827 TCTACATGTTTCTTGGTAATCCGC 59.126 41.667 2.30 0.00 36.30 5.54
7075 9234 6.106673 ACTCTACATGTTTCTTGGTAATCCG 58.893 40.000 2.30 0.00 36.30 4.18
7076 9235 7.278868 CAGACTCTACATGTTTCTTGGTAATCC 59.721 40.741 2.30 0.00 0.00 3.01
7077 9236 7.819900 ACAGACTCTACATGTTTCTTGGTAATC 59.180 37.037 2.30 0.00 0.00 1.75
7079 9238 7.062749 ACAGACTCTACATGTTTCTTGGTAA 57.937 36.000 2.30 0.00 0.00 2.85
7080 9239 6.665992 ACAGACTCTACATGTTTCTTGGTA 57.334 37.500 2.30 0.00 0.00 3.25
7081 9240 5.552870 ACAGACTCTACATGTTTCTTGGT 57.447 39.130 2.30 0.00 0.00 3.67
7082 9241 9.088512 GTTATACAGACTCTACATGTTTCTTGG 57.911 37.037 2.30 0.00 0.00 3.61
7083 9242 8.799091 CGTTATACAGACTCTACATGTTTCTTG 58.201 37.037 2.30 0.00 0.00 3.02
7086 9245 8.182881 AGACGTTATACAGACTCTACATGTTTC 58.817 37.037 2.30 0.00 0.00 2.78
7088 9247 7.627298 AGACGTTATACAGACTCTACATGTT 57.373 36.000 2.30 0.00 0.00 2.71
7089 9248 8.728337 TTAGACGTTATACAGACTCTACATGT 57.272 34.615 2.69 2.69 0.00 3.21
7090 9249 9.653067 CTTTAGACGTTATACAGACTCTACATG 57.347 37.037 0.00 0.00 0.00 3.21
7110 9275 0.543410 TGACCCACCTCCGCTTTAGA 60.543 55.000 0.00 0.00 0.00 2.10
7134 9299 3.959495 ATGGGTGGTAGCATGATCTTT 57.041 42.857 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.