Multiple sequence alignment - TraesCS7D01G294000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G294000 chr7D 100.000 4804 0 0 1 4804 365318998 365314195 0.000000e+00 8872
1 TraesCS7D01G294000 chr7B 96.910 2330 61 7 2483 4804 321342450 321344776 0.000000e+00 3893
2 TraesCS7D01G294000 chr7B 96.257 1336 39 8 1 1328 321340143 321341475 0.000000e+00 2180
3 TraesCS7D01G294000 chr7B 94.890 998 22 11 1363 2342 321341466 321342452 0.000000e+00 1533
4 TraesCS7D01G294000 chr7A 95.824 2323 72 11 2483 4799 403192778 403190475 0.000000e+00 3729
5 TraesCS7D01G294000 chr7A 93.894 1343 58 11 1 1331 403195079 403193749 0.000000e+00 2004
6 TraesCS7D01G294000 chr7A 96.552 986 22 5 1367 2342 403193759 403192776 0.000000e+00 1622
7 TraesCS7D01G294000 chr1A 94.631 149 6 2 2335 2483 492615068 492614922 3.740000e-56 230
8 TraesCS7D01G294000 chr5D 93.197 147 10 0 2338 2484 493524185 493524331 2.910000e-52 217
9 TraesCS7D01G294000 chr3D 91.250 160 13 1 2327 2485 586886483 586886324 2.910000e-52 217
10 TraesCS7D01G294000 chr1D 88.571 175 18 2 2311 2484 478350751 478350924 1.350000e-50 211
11 TraesCS7D01G294000 chr6A 92.958 142 10 0 2342 2483 15501263 15501122 1.750000e-49 207
12 TraesCS7D01G294000 chr6A 92.806 139 10 0 2338 2476 1414068 1413930 8.150000e-48 202
13 TraesCS7D01G294000 chr2B 91.216 148 13 0 2335 2482 535679777 535679630 8.150000e-48 202
14 TraesCS7D01G294000 chr5B 90.000 150 15 0 2336 2485 295583226 295583375 1.360000e-45 195
15 TraesCS7D01G294000 chr6B 90.411 146 14 0 2340 2485 499568570 499568715 4.910000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G294000 chr7D 365314195 365318998 4803 True 8872.000000 8872 100.000000 1 4804 1 chr7D.!!$R1 4803
1 TraesCS7D01G294000 chr7B 321340143 321344776 4633 False 2535.333333 3893 96.019000 1 4804 3 chr7B.!!$F1 4803
2 TraesCS7D01G294000 chr7A 403190475 403195079 4604 True 2451.666667 3729 95.423333 1 4799 3 chr7A.!!$R1 4798

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
858 863 0.394565 CCTAGGGGCAAGATCGGAAG 59.605 60.0 0.0 0.0 0.00 3.46 F
2354 2391 0.107165 AGATTTAGGCTGGGTTCGGC 60.107 55.0 0.0 0.0 44.31 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2388 2425 0.026803 CAGCTAAAACGATGCTCCGC 59.973 55.000 0.0 0.0 34.51 5.54 R
4055 4102 1.153289 GCACATCGGCAGGAGACAT 60.153 57.895 0.0 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 48 6.168389 TGCGAATGCTGATATACTCATGATT 58.832 36.000 0.00 0.00 43.34 2.57
80 83 4.737352 GCAAAGCTGACTGTTTCCATTTGA 60.737 41.667 0.00 0.00 0.00 2.69
225 228 6.617371 AGAGAAGATACCATCCTTTACCACAT 59.383 38.462 0.00 0.00 0.00 3.21
334 337 6.861065 TTGACTGTCATCCTACTTTTTGTC 57.139 37.500 11.86 0.00 0.00 3.18
381 384 5.062183 TCGAATTGATTTTCTGTAGCTGACG 59.938 40.000 0.00 0.00 0.00 4.35
452 455 4.807643 GCACTCTGGATAAAAGGGTTGAGT 60.808 45.833 0.00 0.00 34.38 3.41
516 519 6.746745 ACATTTGGCCATTGAAATCAATTC 57.253 33.333 19.96 2.13 43.48 2.17
612 615 5.596361 TGTGTTGTCCTGACCATTGTTTATT 59.404 36.000 0.00 0.00 0.00 1.40
649 652 3.452990 TGGTTGCGGATATAGGAAGAACA 59.547 43.478 0.00 0.00 0.00 3.18
752 757 6.183361 TGGAATCGGAATGGAGGATTTTCTAT 60.183 38.462 0.00 0.00 30.95 1.98
757 762 9.813826 ATCGGAATGGAGGATTTTCTATAATTT 57.186 29.630 0.00 0.00 0.00 1.82
834 839 4.393062 AGAAGACAAATATGTGAAGCACGG 59.607 41.667 0.00 0.00 40.74 4.94
853 858 1.749033 CGGACCTAGGGGCAAGATC 59.251 63.158 14.81 0.00 35.63 2.75
858 863 0.394565 CCTAGGGGCAAGATCGGAAG 59.605 60.000 0.00 0.00 0.00 3.46
900 913 1.529226 CAACGGCCACCATTAACTGA 58.471 50.000 2.24 0.00 0.00 3.41
912 925 7.330946 GCCACCATTAACTGAAAATAACCTTTC 59.669 37.037 0.00 0.00 36.11 2.62
963 980 1.380380 CCCATCCCAAAGGCAGACC 60.380 63.158 0.00 0.00 0.00 3.85
967 984 1.488705 ATCCCAAAGGCAGACCACGA 61.489 55.000 0.00 0.00 39.06 4.35
1058 1075 0.683412 AATCCTACCGCGGTATTCCC 59.317 55.000 36.37 0.00 0.00 3.97
1080 1097 1.210967 ACTTCCCGTGTTTCTTGGTCA 59.789 47.619 0.00 0.00 0.00 4.02
1095 1112 4.338118 TCTTGGTCATGTTCAGGTTTTGAC 59.662 41.667 0.00 0.00 34.94 3.18
1271 1290 4.559862 TCTCTCCCCAAATCAAGAACTC 57.440 45.455 0.00 0.00 0.00 3.01
1307 1326 9.136323 CAAAATGCCCTAGTTAGGAAGATTATT 57.864 33.333 6.77 0.00 46.63 1.40
1332 1351 9.581289 TTTTCTAAAAAGAGAGAGAGAGAGAGA 57.419 33.333 0.00 0.00 0.00 3.10
1333 1352 8.792830 TTCTAAAAAGAGAGAGAGAGAGAGAG 57.207 38.462 0.00 0.00 0.00 3.20
1334 1353 8.146053 TCTAAAAAGAGAGAGAGAGAGAGAGA 57.854 38.462 0.00 0.00 0.00 3.10
1335 1354 8.260818 TCTAAAAAGAGAGAGAGAGAGAGAGAG 58.739 40.741 0.00 0.00 0.00 3.20
1336 1355 6.627087 AAAAGAGAGAGAGAGAGAGAGAGA 57.373 41.667 0.00 0.00 0.00 3.10
1337 1356 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
1338 1357 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1339 1358 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1340 1359 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1341 1360 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1342 1361 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1343 1362 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1344 1363 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1345 1364 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1346 1365 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1347 1366 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1348 1367 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1349 1368 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1350 1369 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1351 1370 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1352 1371 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1353 1372 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1354 1373 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1355 1374 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1356 1375 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1357 1376 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1358 1377 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1359 1378 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1360 1379 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1361 1380 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1436 1462 2.174639 TCTGGCTTCAGGGTTTCTTTCA 59.825 45.455 0.00 0.00 38.96 2.69
1440 1466 3.214328 GCTTCAGGGTTTCTTTCAGTGA 58.786 45.455 0.00 0.00 0.00 3.41
1658 1692 4.071961 AGATGATACCATTTGCTGCGTA 57.928 40.909 0.00 0.00 32.09 4.42
1675 1709 5.456822 GCTGCGTATTTCAGAATTGGAAATC 59.543 40.000 14.65 8.55 42.35 2.17
2024 2060 5.343307 ACCAATTTGCTCAAAAGTGACTT 57.657 34.783 0.00 0.00 44.69 3.01
2025 2061 6.463995 ACCAATTTGCTCAAAAGTGACTTA 57.536 33.333 0.00 0.00 44.69 2.24
2026 2062 6.507023 ACCAATTTGCTCAAAAGTGACTTAG 58.493 36.000 0.00 0.00 44.69 2.18
2219 2256 0.712380 ATTGGCCACCATTCTTCCCT 59.288 50.000 3.88 0.00 31.53 4.20
2264 2301 3.979911 TGAAATACCAACCCATGCTCAT 58.020 40.909 0.00 0.00 0.00 2.90
2344 2381 7.865706 TTCTCCAATTACTTGAGATTTAGGC 57.134 36.000 0.00 0.00 34.04 3.93
2345 2382 7.200434 TCTCCAATTACTTGAGATTTAGGCT 57.800 36.000 0.00 0.00 34.04 4.58
2346 2383 7.050377 TCTCCAATTACTTGAGATTTAGGCTG 58.950 38.462 0.00 0.00 34.04 4.85
2347 2384 6.122277 TCCAATTACTTGAGATTTAGGCTGG 58.878 40.000 0.00 0.00 34.04 4.85
2348 2385 5.300286 CCAATTACTTGAGATTTAGGCTGGG 59.700 44.000 0.00 0.00 34.04 4.45
2349 2386 5.717119 ATTACTTGAGATTTAGGCTGGGT 57.283 39.130 0.00 0.00 0.00 4.51
2350 2387 5.514500 TTACTTGAGATTTAGGCTGGGTT 57.486 39.130 0.00 0.00 0.00 4.11
2351 2388 3.956744 ACTTGAGATTTAGGCTGGGTTC 58.043 45.455 0.00 0.00 0.00 3.62
2352 2389 2.691409 TGAGATTTAGGCTGGGTTCG 57.309 50.000 0.00 0.00 0.00 3.95
2353 2390 1.209504 TGAGATTTAGGCTGGGTTCGG 59.790 52.381 0.00 0.00 0.00 4.30
2354 2391 0.107165 AGATTTAGGCTGGGTTCGGC 60.107 55.000 0.00 0.00 44.31 5.54
2355 2392 0.393808 GATTTAGGCTGGGTTCGGCA 60.394 55.000 0.00 0.00 46.76 5.69
2356 2393 0.394352 ATTTAGGCTGGGTTCGGCAG 60.394 55.000 0.00 0.00 46.76 4.85
2357 2394 3.622060 TTAGGCTGGGTTCGGCAGC 62.622 63.158 0.00 0.00 46.76 5.25
2361 2398 4.785453 CTGGGTTCGGCAGCCCTC 62.785 72.222 5.63 0.00 45.06 4.30
2365 2402 4.021925 GTTCGGCAGCCCTCCACT 62.022 66.667 5.63 0.00 0.00 4.00
2366 2403 3.706373 TTCGGCAGCCCTCCACTC 61.706 66.667 5.63 0.00 0.00 3.51
2369 2406 3.791586 GGCAGCCCTCCACTCCTC 61.792 72.222 0.00 0.00 0.00 3.71
2370 2407 4.154347 GCAGCCCTCCACTCCTCG 62.154 72.222 0.00 0.00 0.00 4.63
2371 2408 3.465403 CAGCCCTCCACTCCTCGG 61.465 72.222 0.00 0.00 0.00 4.63
2372 2409 3.999285 AGCCCTCCACTCCTCGGT 61.999 66.667 0.00 0.00 0.00 4.69
2373 2410 3.462678 GCCCTCCACTCCTCGGTC 61.463 72.222 0.00 0.00 0.00 4.79
2374 2411 2.037367 CCCTCCACTCCTCGGTCA 59.963 66.667 0.00 0.00 0.00 4.02
2375 2412 2.352032 CCCTCCACTCCTCGGTCAC 61.352 68.421 0.00 0.00 0.00 3.67
2376 2413 2.701780 CCTCCACTCCTCGGTCACG 61.702 68.421 0.00 0.00 42.74 4.35
2377 2414 2.675423 TCCACTCCTCGGTCACGG 60.675 66.667 0.00 0.00 41.39 4.94
2378 2415 2.675423 CCACTCCTCGGTCACGGA 60.675 66.667 0.00 0.00 41.39 4.69
2408 2445 0.026803 CGGAGCATCGTTTTAGCTGC 59.973 55.000 0.00 0.00 42.37 5.25
2409 2446 1.373570 GGAGCATCGTTTTAGCTGCT 58.626 50.000 7.57 7.57 44.98 4.24
2411 2448 1.373570 AGCATCGTTTTAGCTGCTCC 58.626 50.000 4.91 0.00 39.06 4.70
2412 2449 1.086696 GCATCGTTTTAGCTGCTCCA 58.913 50.000 4.91 0.00 31.29 3.86
2413 2450 1.672881 GCATCGTTTTAGCTGCTCCAT 59.327 47.619 4.91 0.00 31.29 3.41
2414 2451 2.872245 GCATCGTTTTAGCTGCTCCATA 59.128 45.455 4.91 0.00 31.29 2.74
2415 2452 3.312421 GCATCGTTTTAGCTGCTCCATAA 59.688 43.478 4.91 0.00 31.29 1.90
2416 2453 4.201910 GCATCGTTTTAGCTGCTCCATAAA 60.202 41.667 4.91 0.00 31.29 1.40
2417 2454 5.506317 GCATCGTTTTAGCTGCTCCATAAAT 60.506 40.000 4.91 0.00 31.29 1.40
2418 2455 6.498304 CATCGTTTTAGCTGCTCCATAAATT 58.502 36.000 4.91 0.00 0.00 1.82
2419 2456 7.639039 CATCGTTTTAGCTGCTCCATAAATTA 58.361 34.615 4.91 0.00 0.00 1.40
2420 2457 7.011828 TCGTTTTAGCTGCTCCATAAATTAC 57.988 36.000 4.91 0.00 0.00 1.89
2421 2458 6.596106 TCGTTTTAGCTGCTCCATAAATTACA 59.404 34.615 4.91 0.00 0.00 2.41
2422 2459 7.119992 TCGTTTTAGCTGCTCCATAAATTACAA 59.880 33.333 4.91 0.00 0.00 2.41
2423 2460 7.218204 CGTTTTAGCTGCTCCATAAATTACAAC 59.782 37.037 4.91 0.00 0.00 3.32
2424 2461 7.938140 TTTAGCTGCTCCATAAATTACAACT 57.062 32.000 4.91 0.00 0.00 3.16
2425 2462 9.456147 TTTTAGCTGCTCCATAAATTACAACTA 57.544 29.630 4.91 0.00 0.00 2.24
2426 2463 8.662781 TTAGCTGCTCCATAAATTACAACTAG 57.337 34.615 4.91 0.00 0.00 2.57
2427 2464 5.529060 AGCTGCTCCATAAATTACAACTAGC 59.471 40.000 0.00 0.00 0.00 3.42
2428 2465 5.529060 GCTGCTCCATAAATTACAACTAGCT 59.471 40.000 0.00 0.00 0.00 3.32
2429 2466 6.512415 GCTGCTCCATAAATTACAACTAGCTG 60.512 42.308 0.00 0.00 0.00 4.24
2430 2467 5.296780 TGCTCCATAAATTACAACTAGCTGC 59.703 40.000 0.00 0.00 0.00 5.25
2431 2468 5.278022 GCTCCATAAATTACAACTAGCTGCC 60.278 44.000 0.00 0.00 0.00 4.85
2432 2469 6.001449 TCCATAAATTACAACTAGCTGCCT 57.999 37.500 0.00 0.00 0.00 4.75
2433 2470 6.055588 TCCATAAATTACAACTAGCTGCCTC 58.944 40.000 0.00 0.00 0.00 4.70
2434 2471 6.058183 CCATAAATTACAACTAGCTGCCTCT 58.942 40.000 0.00 0.00 0.00 3.69
2435 2472 6.203723 CCATAAATTACAACTAGCTGCCTCTC 59.796 42.308 0.00 0.00 0.00 3.20
2436 2473 3.828875 ATTACAACTAGCTGCCTCTCC 57.171 47.619 0.00 0.00 0.00 3.71
2437 2474 1.103803 TACAACTAGCTGCCTCTCCG 58.896 55.000 0.00 0.00 0.00 4.63
2438 2475 1.520342 CAACTAGCTGCCTCTCCGC 60.520 63.158 0.00 0.00 0.00 5.54
2439 2476 1.684049 AACTAGCTGCCTCTCCGCT 60.684 57.895 0.00 0.00 37.77 5.52
2440 2477 1.671901 AACTAGCTGCCTCTCCGCTC 61.672 60.000 0.00 0.00 35.33 5.03
2441 2478 2.835431 TAGCTGCCTCTCCGCTCC 60.835 66.667 0.00 0.00 35.33 4.70
2478 2515 3.300013 GGAGGGAGTCCGAACAGG 58.700 66.667 2.26 0.00 42.97 4.00
2479 2516 2.579738 GAGGGAGTCCGAACAGGC 59.420 66.667 2.26 0.00 40.77 4.85
2480 2517 1.985116 GAGGGAGTCCGAACAGGCT 60.985 63.158 2.26 0.00 40.77 4.58
2481 2518 1.950973 GAGGGAGTCCGAACAGGCTC 61.951 65.000 2.26 0.00 40.28 4.70
2512 2554 5.927030 TGATAGTTTTCACGCTTGTTCATC 58.073 37.500 0.00 0.00 0.00 2.92
2558 2600 4.455533 TGTTGTATGTCTCAGTTGGAATGC 59.544 41.667 0.00 0.00 0.00 3.56
2680 2723 8.593945 TTATGGCAGATATTGTCCTTTTTCTT 57.406 30.769 0.00 0.00 0.00 2.52
2764 2807 1.668826 ACCAGGCCATGAGGTTTCTA 58.331 50.000 5.01 0.00 37.19 2.10
3012 3058 6.416750 CGTAACGTAAGATGAGCATAATGACA 59.583 38.462 0.00 0.00 43.62 3.58
3164 3210 5.701290 ACTGCAATAGTTCAGTACTGTTTCC 59.299 40.000 21.99 8.84 41.32 3.13
3471 3517 5.414789 AATATTTTGGCCTGGTTGTTACC 57.585 39.130 3.32 0.00 45.26 2.85
3732 3779 0.037975 CACAACTTTCCTGCATGGCC 60.038 55.000 0.00 0.00 35.26 5.36
3757 3804 7.962918 CCTGTTGACATCCTTAAAATTTACTCG 59.037 37.037 0.00 0.00 0.00 4.18
3891 3938 4.712122 AAAACACAAAGTTGACGGTGAT 57.288 36.364 0.00 0.00 41.19 3.06
3936 3983 7.516481 CCGAATTCTTGCATATTCAGACATAG 58.484 38.462 3.52 0.00 31.70 2.23
4360 4407 7.852263 TCAGAAAATAGGCTAGTTCTAGCTTT 58.148 34.615 24.67 18.51 42.45 3.51
4559 4609 4.155826 TCGTGCAAATCCAAGTTTATCCAG 59.844 41.667 0.00 0.00 0.00 3.86
4597 4647 4.211125 TGTAAGGTCCAAAATGAGCAACA 58.789 39.130 0.00 0.00 35.23 3.33
4600 4650 1.340889 GGTCCAAAATGAGCAACAGCA 59.659 47.619 0.00 0.00 33.04 4.41
4643 4693 9.695526 TCAATCACCTGAAATATTTTTGTTCTG 57.304 29.630 1.43 0.00 0.00 3.02
4663 4713 6.204852 TCTGAATAATGCACAATCCCCTAT 57.795 37.500 0.00 0.00 0.00 2.57
4683 4733 7.316640 CCCTATTCTAAATAGATGTCCGACAG 58.683 42.308 7.41 0.00 31.40 3.51
4720 4770 9.265901 GCATTCTAATCTCATTGTACTACACAT 57.734 33.333 0.00 0.00 36.90 3.21
4756 4806 6.998968 AAACATCTTCATGAATCTGAGTCC 57.001 37.500 18.97 0.00 33.72 3.85
4760 4810 5.604758 TCTTCATGAATCTGAGTCCGATT 57.395 39.130 8.96 9.30 34.01 3.34
4771 4821 3.926616 TGAGTCCGATTCAGAAAGGTTC 58.073 45.455 7.64 7.62 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 83 5.589831 AGGGCAGGGTTTTTATCTGTAATT 58.410 37.500 0.00 0.00 0.00 1.40
225 228 2.585330 TGCAGCAACTCCAAATTCTGA 58.415 42.857 0.00 0.00 0.00 3.27
334 337 9.715123 TCGAAGTTAATGCAACATTATTATGTG 57.285 29.630 0.00 0.00 44.14 3.21
381 384 3.575965 ATTCAGGAAATGCCGACAAAC 57.424 42.857 0.00 0.00 43.43 2.93
452 455 6.684897 AAATCAATTTCATGTTCCTTCCCA 57.315 33.333 0.00 0.00 0.00 4.37
516 519 3.380320 GGAACATCATACGGAAAAAGGGG 59.620 47.826 0.00 0.00 0.00 4.79
612 615 4.381398 CCGCAACCAACATATGATTTTCCA 60.381 41.667 10.38 0.00 0.00 3.53
649 652 6.654582 CAGCAAGGGGTTATAAAATGCTTTTT 59.345 34.615 14.02 14.02 40.40 1.94
834 839 2.384653 GATCTTGCCCCTAGGTCCGC 62.385 65.000 8.29 6.90 34.57 5.54
853 858 1.087771 GCACCGGTCAATACCTTCCG 61.088 60.000 2.59 0.00 44.35 4.30
858 863 1.029947 CCTTGGCACCGGTCAATACC 61.030 60.000 2.59 1.66 38.10 2.73
900 913 6.650390 GTGCATGACCAATGAAAGGTTATTTT 59.350 34.615 0.00 0.00 40.09 1.82
912 925 5.375417 TTCTAAGTTGTGCATGACCAATG 57.625 39.130 0.00 0.00 39.49 2.82
963 980 3.885297 AGGCATGAATAAATCCCTTCGTG 59.115 43.478 0.00 0.00 40.02 4.35
967 984 5.136048 TCCCTAAGGCATGAATAAATCCCTT 59.864 40.000 0.00 0.00 36.68 3.95
1058 1075 0.865769 CCAAGAAACACGGGAAGTCG 59.134 55.000 0.00 0.00 0.00 4.18
1067 1084 3.632145 ACCTGAACATGACCAAGAAACAC 59.368 43.478 0.00 0.00 0.00 3.32
1080 1097 3.804036 TGTCTCGTCAAAACCTGAACAT 58.196 40.909 0.00 0.00 35.22 2.71
1095 1112 3.899734 TGTTTGCAATGGAAATGTCTCG 58.100 40.909 2.74 0.00 0.00 4.04
1271 1290 2.843701 AGGGCATTTTGATCTAGAGCG 58.156 47.619 3.11 0.00 0.00 5.03
1307 1326 9.231297 CTCTCTCTCTCTCTCTCTTTTTAGAAA 57.769 37.037 0.00 0.00 0.00 2.52
1317 1336 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1318 1337 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1319 1338 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1320 1339 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1321 1340 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1322 1341 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1323 1342 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1324 1343 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1325 1344 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1326 1345 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1327 1346 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1328 1347 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1329 1348 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1330 1349 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1331 1350 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1332 1351 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1333 1352 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1334 1353 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1335 1354 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1336 1355 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1337 1356 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1338 1357 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1339 1358 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1340 1359 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1341 1360 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1342 1361 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1343 1362 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1344 1363 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1345 1364 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1346 1365 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1347 1366 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1348 1367 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
1349 1368 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
1350 1369 4.078922 TCCTCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
1351 1370 4.219115 TCCTCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
1352 1371 4.271807 TCCTCTCTCTCTCTCTCTCTCT 57.728 50.000 0.00 0.00 0.00 3.10
1353 1372 4.651503 TCTTCCTCTCTCTCTCTCTCTCTC 59.348 50.000 0.00 0.00 0.00 3.20
1354 1373 4.624913 TCTTCCTCTCTCTCTCTCTCTCT 58.375 47.826 0.00 0.00 0.00 3.10
1355 1374 5.559148 ATCTTCCTCTCTCTCTCTCTCTC 57.441 47.826 0.00 0.00 0.00 3.20
1356 1375 5.983333 AATCTTCCTCTCTCTCTCTCTCT 57.017 43.478 0.00 0.00 0.00 3.10
1357 1376 7.391833 GGATAAATCTTCCTCTCTCTCTCTCTC 59.608 44.444 0.00 0.00 0.00 3.20
1358 1377 7.074237 AGGATAAATCTTCCTCTCTCTCTCTCT 59.926 40.741 0.00 0.00 39.46 3.10
1359 1378 7.175641 CAGGATAAATCTTCCTCTCTCTCTCTC 59.824 44.444 0.00 0.00 41.78 3.20
1360 1379 7.006509 CAGGATAAATCTTCCTCTCTCTCTCT 58.993 42.308 0.00 0.00 41.78 3.10
1361 1380 6.777580 ACAGGATAAATCTTCCTCTCTCTCTC 59.222 42.308 0.00 0.00 41.78 3.20
1436 1462 7.174253 TGCGACTAAAATTTCAACCTATTCACT 59.826 33.333 0.00 0.00 0.00 3.41
1440 1466 7.653647 TGTTGCGACTAAAATTTCAACCTATT 58.346 30.769 5.50 0.00 34.57 1.73
1645 1671 3.763097 TCTGAAATACGCAGCAAATGG 57.237 42.857 0.00 0.00 33.45 3.16
1653 1687 6.507958 TGATTTCCAATTCTGAAATACGCA 57.492 33.333 10.84 4.91 41.29 5.24
1658 1692 7.039882 GTGCTGATGATTTCCAATTCTGAAAT 58.960 34.615 10.72 10.72 43.28 2.17
2046 2083 7.994911 TCTGTATGATATCCTGCAAAGAATGTT 59.005 33.333 0.00 0.00 0.00 2.71
2264 2301 4.865925 GCAAATGCTGAATATTGCAACTGA 59.134 37.500 0.00 0.00 45.61 3.41
2339 2376 2.668632 CTGCCGAACCCAGCCTAA 59.331 61.111 0.00 0.00 0.00 2.69
2348 2385 3.959991 GAGTGGAGGGCTGCCGAAC 62.960 68.421 13.40 7.99 0.00 3.95
2349 2386 3.706373 GAGTGGAGGGCTGCCGAA 61.706 66.667 13.40 0.00 0.00 4.30
2352 2389 3.791586 GAGGAGTGGAGGGCTGCC 61.792 72.222 11.05 11.05 0.00 4.85
2353 2390 4.154347 CGAGGAGTGGAGGGCTGC 62.154 72.222 0.00 0.00 0.00 5.25
2354 2391 3.465403 CCGAGGAGTGGAGGGCTG 61.465 72.222 0.00 0.00 0.00 4.85
2355 2392 3.966930 GACCGAGGAGTGGAGGGCT 62.967 68.421 0.00 0.00 0.00 5.19
2356 2393 3.462678 GACCGAGGAGTGGAGGGC 61.463 72.222 0.00 0.00 0.00 5.19
2357 2394 2.037367 TGACCGAGGAGTGGAGGG 59.963 66.667 0.00 0.00 0.00 4.30
2358 2395 2.701780 CGTGACCGAGGAGTGGAGG 61.702 68.421 0.00 0.00 35.63 4.30
2359 2396 2.701780 CCGTGACCGAGGAGTGGAG 61.702 68.421 0.00 0.00 35.63 3.86
2360 2397 2.675423 CCGTGACCGAGGAGTGGA 60.675 66.667 0.00 0.00 35.63 4.02
2361 2398 2.675423 TCCGTGACCGAGGAGTGG 60.675 66.667 0.00 0.00 35.63 4.00
2362 2399 2.878429 CTCCGTGACCGAGGAGTG 59.122 66.667 3.49 0.00 46.68 3.51
2367 2404 4.180946 CTCCGCTCCGTGACCGAG 62.181 72.222 0.00 0.00 35.63 4.63
2385 2422 1.762222 CTAAAACGATGCTCCGCCCG 61.762 60.000 0.00 0.00 0.00 6.13
2386 2423 2.014594 CTAAAACGATGCTCCGCCC 58.985 57.895 0.00 0.00 0.00 6.13
2387 2424 1.090052 AGCTAAAACGATGCTCCGCC 61.090 55.000 0.00 0.00 30.41 6.13
2388 2425 0.026803 CAGCTAAAACGATGCTCCGC 59.973 55.000 0.00 0.00 34.51 5.54
2389 2426 0.026803 GCAGCTAAAACGATGCTCCG 59.973 55.000 0.00 0.00 42.63 4.63
2390 2427 3.905900 GCAGCTAAAACGATGCTCC 57.094 52.632 0.00 0.00 42.63 4.70
2393 2430 1.086696 TGGAGCAGCTAAAACGATGC 58.913 50.000 0.00 0.00 46.02 3.91
2394 2431 5.484173 TTTATGGAGCAGCTAAAACGATG 57.516 39.130 0.00 0.00 0.00 3.84
2395 2432 6.699575 AATTTATGGAGCAGCTAAAACGAT 57.300 33.333 0.00 0.00 0.00 3.73
2396 2433 6.596106 TGTAATTTATGGAGCAGCTAAAACGA 59.404 34.615 0.00 0.00 0.00 3.85
2397 2434 6.781138 TGTAATTTATGGAGCAGCTAAAACG 58.219 36.000 0.00 0.00 0.00 3.60
2398 2435 8.244113 AGTTGTAATTTATGGAGCAGCTAAAAC 58.756 33.333 0.00 0.00 0.00 2.43
2399 2436 8.348285 AGTTGTAATTTATGGAGCAGCTAAAA 57.652 30.769 0.00 0.00 0.00 1.52
2400 2437 7.938140 AGTTGTAATTTATGGAGCAGCTAAA 57.062 32.000 0.00 0.00 0.00 1.85
2401 2438 7.226720 GCTAGTTGTAATTTATGGAGCAGCTAA 59.773 37.037 0.00 0.00 0.00 3.09
2402 2439 6.706270 GCTAGTTGTAATTTATGGAGCAGCTA 59.294 38.462 0.00 0.00 0.00 3.32
2403 2440 5.529060 GCTAGTTGTAATTTATGGAGCAGCT 59.471 40.000 0.00 0.00 0.00 4.24
2404 2441 5.529060 AGCTAGTTGTAATTTATGGAGCAGC 59.471 40.000 0.00 0.00 0.00 5.25
2405 2442 6.512415 GCAGCTAGTTGTAATTTATGGAGCAG 60.512 42.308 8.48 0.00 0.00 4.24
2406 2443 5.296780 GCAGCTAGTTGTAATTTATGGAGCA 59.703 40.000 8.48 0.00 0.00 4.26
2407 2444 5.278022 GGCAGCTAGTTGTAATTTATGGAGC 60.278 44.000 8.48 0.00 0.00 4.70
2408 2445 6.058183 AGGCAGCTAGTTGTAATTTATGGAG 58.942 40.000 8.48 0.00 0.00 3.86
2409 2446 6.001449 AGGCAGCTAGTTGTAATTTATGGA 57.999 37.500 8.48 0.00 0.00 3.41
2410 2447 6.058183 AGAGGCAGCTAGTTGTAATTTATGG 58.942 40.000 8.48 0.00 0.00 2.74
2411 2448 6.203723 GGAGAGGCAGCTAGTTGTAATTTATG 59.796 42.308 8.48 0.00 0.00 1.90
2412 2449 6.292150 GGAGAGGCAGCTAGTTGTAATTTAT 58.708 40.000 8.48 0.00 0.00 1.40
2413 2450 5.671493 GGAGAGGCAGCTAGTTGTAATTTA 58.329 41.667 8.48 0.00 0.00 1.40
2414 2451 4.518249 GGAGAGGCAGCTAGTTGTAATTT 58.482 43.478 8.48 0.00 0.00 1.82
2415 2452 3.430929 CGGAGAGGCAGCTAGTTGTAATT 60.431 47.826 8.48 0.00 0.00 1.40
2416 2453 2.101582 CGGAGAGGCAGCTAGTTGTAAT 59.898 50.000 8.48 0.00 0.00 1.89
2417 2454 1.476891 CGGAGAGGCAGCTAGTTGTAA 59.523 52.381 8.48 0.00 0.00 2.41
2418 2455 1.103803 CGGAGAGGCAGCTAGTTGTA 58.896 55.000 8.48 0.00 0.00 2.41
2419 2456 1.893786 CGGAGAGGCAGCTAGTTGT 59.106 57.895 8.48 0.00 0.00 3.32
2420 2457 1.520342 GCGGAGAGGCAGCTAGTTG 60.520 63.158 1.58 1.58 34.66 3.16
2421 2458 1.684049 AGCGGAGAGGCAGCTAGTT 60.684 57.895 0.00 0.00 46.44 2.24
2422 2459 2.043450 AGCGGAGAGGCAGCTAGT 60.043 61.111 0.00 0.00 46.44 2.57
2440 2477 4.367023 TCCGCAACTCCGTTCCGG 62.367 66.667 2.81 2.81 46.88 5.14
2441 2478 2.809601 CTCCGCAACTCCGTTCCG 60.810 66.667 0.00 0.00 0.00 4.30
2442 2479 3.119096 GCTCCGCAACTCCGTTCC 61.119 66.667 0.00 0.00 0.00 3.62
2443 2480 3.119096 GGCTCCGCAACTCCGTTC 61.119 66.667 0.00 0.00 0.00 3.95
2447 2484 4.821589 CTCCGGCTCCGCAACTCC 62.822 72.222 0.00 0.00 38.24 3.85
2448 2485 4.821589 CCTCCGGCTCCGCAACTC 62.822 72.222 0.00 0.00 38.24 3.01
2461 2498 3.020237 GCCTGTTCGGACTCCCTCC 62.020 68.421 0.00 0.00 35.33 4.30
2462 2499 1.950973 GAGCCTGTTCGGACTCCCTC 61.951 65.000 0.00 0.00 32.87 4.30
2463 2500 1.985116 GAGCCTGTTCGGACTCCCT 60.985 63.158 0.00 0.00 32.87 4.20
2464 2501 1.545706 AAGAGCCTGTTCGGACTCCC 61.546 60.000 0.00 0.00 36.92 4.30
2465 2502 1.183549 TAAGAGCCTGTTCGGACTCC 58.816 55.000 0.00 0.00 36.92 3.85
2466 2503 3.190874 CAATAAGAGCCTGTTCGGACTC 58.809 50.000 0.00 0.00 36.67 3.36
2467 2504 2.678190 GCAATAAGAGCCTGTTCGGACT 60.678 50.000 0.00 0.00 33.16 3.85
2468 2505 1.666189 GCAATAAGAGCCTGTTCGGAC 59.334 52.381 0.00 0.00 33.16 4.79
2469 2506 1.555075 AGCAATAAGAGCCTGTTCGGA 59.445 47.619 0.00 0.00 33.16 4.55
2470 2507 1.667724 CAGCAATAAGAGCCTGTTCGG 59.332 52.381 0.00 0.00 0.00 4.30
2471 2508 2.621338 TCAGCAATAAGAGCCTGTTCG 58.379 47.619 0.00 0.00 0.00 3.95
2472 2509 5.363939 ACTATCAGCAATAAGAGCCTGTTC 58.636 41.667 0.00 0.00 0.00 3.18
2473 2510 5.365021 ACTATCAGCAATAAGAGCCTGTT 57.635 39.130 0.00 0.00 0.00 3.16
2474 2511 5.365021 AACTATCAGCAATAAGAGCCTGT 57.635 39.130 0.00 0.00 0.00 4.00
2475 2512 6.317140 TGAAAACTATCAGCAATAAGAGCCTG 59.683 38.462 0.00 0.00 0.00 4.85
2476 2513 6.317391 GTGAAAACTATCAGCAATAAGAGCCT 59.683 38.462 0.00 0.00 0.00 4.58
2477 2514 6.490534 GTGAAAACTATCAGCAATAAGAGCC 58.509 40.000 0.00 0.00 0.00 4.70
2478 2515 6.188175 CGTGAAAACTATCAGCAATAAGAGC 58.812 40.000 0.00 0.00 0.00 4.09
2479 2516 6.036517 AGCGTGAAAACTATCAGCAATAAGAG 59.963 38.462 0.00 0.00 0.00 2.85
2480 2517 5.874810 AGCGTGAAAACTATCAGCAATAAGA 59.125 36.000 0.00 0.00 0.00 2.10
2481 2518 6.111768 AGCGTGAAAACTATCAGCAATAAG 57.888 37.500 0.00 0.00 0.00 1.73
2512 2554 3.041701 TGCAAAAAGAGCAGCCGG 58.958 55.556 0.00 0.00 37.02 6.13
2558 2600 8.752766 AATTGATTCAACTAAGACAGCAAATG 57.247 30.769 0.15 0.00 0.00 2.32
2671 2714 5.656213 AGATGATGGCAAGAAGAAAAAGG 57.344 39.130 0.00 0.00 0.00 3.11
2680 2723 1.879372 GCCGCATAGATGATGGCAAGA 60.879 52.381 16.81 0.00 44.92 3.02
2764 2807 8.788325 ATTTACTTCGAGCTGGTAGTTAAAAT 57.212 30.769 12.92 10.69 0.00 1.82
3012 3058 2.020694 GCACCTGGCACATATCAAGCT 61.021 52.381 0.00 0.00 43.97 3.74
3115 3161 6.872920 TGGAAACTTAACAAGAAAACAGCAT 58.127 32.000 0.00 0.00 0.00 3.79
3269 3315 7.224753 CGGCAAGTTACATCACTGAAGTTATAT 59.775 37.037 0.00 0.00 0.00 0.86
3270 3316 6.533723 CGGCAAGTTACATCACTGAAGTTATA 59.466 38.462 0.00 0.00 0.00 0.98
3471 3517 5.046529 AGCAAGTTCATAAGAGCGATAGTG 58.953 41.667 0.00 0.00 39.35 2.74
3529 3575 4.096984 GGGGACAAAGAATAAGTCATGCAG 59.903 45.833 0.00 0.00 34.04 4.41
3693 3740 5.046529 TGTGTGGTTTCAATAATTGTGTGC 58.953 37.500 0.00 0.00 0.00 4.57
3732 3779 8.504005 ACGAGTAAATTTTAAGGATGTCAACAG 58.496 33.333 0.00 0.00 0.00 3.16
3757 3804 9.751542 ACATGTATACTCTCTGCAAAATAGTAC 57.248 33.333 0.00 0.00 0.00 2.73
3891 3938 1.405105 GCAGAAGCAGTTCACCAACAA 59.595 47.619 0.00 0.00 41.58 2.83
4005 4052 3.187842 GGTACCACCATTCTGTTTCGAAC 59.812 47.826 7.15 0.00 38.42 3.95
4007 4054 2.369203 TGGTACCACCATTCTGTTTCGA 59.631 45.455 11.60 0.00 44.79 3.71
4055 4102 1.153289 GCACATCGGCAGGAGACAT 60.153 57.895 0.00 0.00 0.00 3.06
4327 4374 6.904626 ACTAGCCTATTTTCTGAATCCATGT 58.095 36.000 0.00 0.00 0.00 3.21
4559 4609 6.239036 GGACCTTACATCCTAAATGAATTGCC 60.239 42.308 0.00 0.00 33.03 4.52
4597 4647 9.276590 TGATTGATTAATCTTGTTCGATATGCT 57.723 29.630 16.24 0.00 42.56 3.79
4600 4650 9.784531 AGGTGATTGATTAATCTTGTTCGATAT 57.215 29.630 16.24 0.00 42.56 1.63
4643 4693 8.635765 TTAGAATAGGGGATTGTGCATTATTC 57.364 34.615 0.00 0.00 0.00 1.75
4648 4698 7.988937 TCTATTTAGAATAGGGGATTGTGCAT 58.011 34.615 7.60 0.00 0.00 3.96
4650 4700 7.885399 ACATCTATTTAGAATAGGGGATTGTGC 59.115 37.037 7.60 0.00 35.69 4.57
4663 4713 4.202223 GCCCTGTCGGACATCTATTTAGAA 60.202 45.833 11.86 0.00 35.69 2.10
4720 4770 9.513906 TCATGAAGATGTTTTGTATTCCTGTAA 57.486 29.630 0.00 0.00 0.00 2.41
4756 4806 2.924290 GGAGTCGAACCTTTCTGAATCG 59.076 50.000 5.09 5.09 32.40 3.34
4760 4810 1.612676 TCGGAGTCGAACCTTTCTGA 58.387 50.000 8.03 0.43 43.03 3.27
4771 4821 2.383527 GCAAGCCAAGTCGGAGTCG 61.384 63.158 0.00 0.00 36.56 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.