Multiple sequence alignment - TraesCS7D01G293900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G293900 chr7D 100.000 3654 0 0 1 3654 365259956 365263609 0.000000e+00 6748
1 TraesCS7D01G293900 chr7D 99.412 170 1 0 3485 3654 509252880 509252711 3.540000e-80 309
2 TraesCS7D01G293900 chr7B 96.877 2658 56 17 418 3054 321390527 321387876 0.000000e+00 4423
3 TraesCS7D01G293900 chr7B 90.993 433 9 8 3052 3483 321387728 321387325 1.150000e-154 556
4 TraesCS7D01G293900 chr7B 98.333 60 1 0 342 401 321390574 321390515 4.990000e-19 106
5 TraesCS7D01G293900 chr7A 96.719 1646 45 5 1417 3054 403177633 403179277 0.000000e+00 2732
6 TraesCS7D01G293900 chr7A 96.293 1025 21 10 416 1427 403170726 403171746 0.000000e+00 1666
7 TraesCS7D01G293900 chr7A 96.939 196 6 0 3251 3446 403180011 403180206 2.720000e-86 329
8 TraesCS7D01G293900 chr7A 99.254 134 1 0 3052 3185 403179855 403179988 3.650000e-60 243
9 TraesCS7D01G293900 chr5A 93.548 341 17 3 1 337 148051711 148052050 1.510000e-138 503
10 TraesCS7D01G293900 chr3A 93.510 339 19 3 1 337 721652266 721651929 5.450000e-138 501
11 TraesCS7D01G293900 chr5D 90.962 343 23 8 2 339 327278525 327278864 4.300000e-124 455
12 TraesCS7D01G293900 chr5D 90.698 344 24 5 1 339 231584661 231585001 5.560000e-123 451
13 TraesCS7D01G293900 chr5D 91.562 320 23 1 1 316 448516978 448516659 4.330000e-119 438
14 TraesCS7D01G293900 chr5D 99.412 170 1 0 3485 3654 23179230 23179399 3.540000e-80 309
15 TraesCS7D01G293900 chr3D 91.562 320 23 1 1 316 534038828 534039147 4.330000e-119 438
16 TraesCS7D01G293900 chr2D 91.250 320 24 1 1 316 557119021 557118702 2.020000e-117 433
17 TraesCS7D01G293900 chrUn 90.938 320 25 1 1 316 253774142 253774461 9.380000e-116 427
18 TraesCS7D01G293900 chrUn 100.000 170 0 0 3485 3654 45268234 45268065 7.620000e-82 315
19 TraesCS7D01G293900 chrUn 100.000 170 0 0 3485 3654 267238307 267238476 7.620000e-82 315
20 TraesCS7D01G293900 chrUn 100.000 170 0 0 3485 3654 352496105 352495936 7.620000e-82 315
21 TraesCS7D01G293900 chrUn 100.000 170 0 0 3485 3654 352511743 352511574 7.620000e-82 315
22 TraesCS7D01G293900 chrUn 100.000 170 0 0 3485 3654 433099004 433099173 7.620000e-82 315
23 TraesCS7D01G293900 chr1D 90.938 320 25 1 1 316 406717364 406717045 9.380000e-116 427
24 TraesCS7D01G293900 chr1D 85.833 120 14 3 1052 1171 467938184 467938068 1.380000e-24 124
25 TraesCS7D01G293900 chr4A 97.765 179 3 1 3477 3654 637859307 637859129 1.270000e-79 307
26 TraesCS7D01G293900 chr4A 97.191 178 3 2 3479 3654 637864071 637863894 2.130000e-77 300
27 TraesCS7D01G293900 chr1A 85.000 120 15 3 1052 1171 560962570 560962454 6.410000e-23 119
28 TraesCS7D01G293900 chr1B 84.167 120 16 3 1052 1171 646191807 646191691 2.980000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G293900 chr7D 365259956 365263609 3653 False 6748.000000 6748 100.000000 1 3654 1 chr7D.!!$F1 3653
1 TraesCS7D01G293900 chr7B 321387325 321390574 3249 True 1695.000000 4423 95.401000 342 3483 3 chr7B.!!$R1 3141
2 TraesCS7D01G293900 chr7A 403170726 403171746 1020 False 1666.000000 1666 96.293000 416 1427 1 chr7A.!!$F1 1011
3 TraesCS7D01G293900 chr7A 403177633 403180206 2573 False 1101.333333 2732 97.637333 1417 3446 3 chr7A.!!$F2 2029

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
397 398 0.035739 GGCTTCCTAACACCCAACGA 59.964 55.0 0.0 0.0 0.0 3.85 F
406 407 0.179468 ACACCCAACGAATATCCCCG 59.821 55.0 0.0 0.0 0.0 5.73 F
409 410 0.464735 CCCAACGAATATCCCCGCAA 60.465 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2191 2219 0.537143 CAGTGCCCAGTTGCCTGTTA 60.537 55.000 0.0 0.0 36.95 2.41 R
2443 2471 2.927856 ATCACCAGGTCACGCCCA 60.928 61.111 0.0 0.0 38.26 5.36 R
2923 2952 6.330004 ACTTGCAACACATGATAATTCACA 57.670 33.333 0.0 0.0 33.85 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.996480 GAGAGGGGCATGTGTCTAATAC 58.004 50.000 0.00 0.00 0.00 1.89
22 23 2.706190 AGAGGGGCATGTGTCTAATACC 59.294 50.000 0.00 0.00 0.00 2.73
23 24 1.416401 AGGGGCATGTGTCTAATACCG 59.584 52.381 0.00 0.00 0.00 4.02
24 25 1.140252 GGGGCATGTGTCTAATACCGT 59.860 52.381 0.00 0.00 0.00 4.83
25 26 2.420967 GGGGCATGTGTCTAATACCGTT 60.421 50.000 0.00 0.00 0.00 4.44
26 27 2.612212 GGGCATGTGTCTAATACCGTTG 59.388 50.000 0.00 0.00 0.00 4.10
27 28 2.031683 GGCATGTGTCTAATACCGTTGC 59.968 50.000 0.00 0.00 0.00 4.17
28 29 2.936498 GCATGTGTCTAATACCGTTGCT 59.064 45.455 0.00 0.00 0.00 3.91
29 30 3.242413 GCATGTGTCTAATACCGTTGCTG 60.242 47.826 0.00 0.00 0.00 4.41
30 31 2.343101 TGTGTCTAATACCGTTGCTGC 58.657 47.619 0.00 0.00 0.00 5.25
31 32 2.028476 TGTGTCTAATACCGTTGCTGCT 60.028 45.455 0.00 0.00 0.00 4.24
32 33 3.193903 TGTGTCTAATACCGTTGCTGCTA 59.806 43.478 0.00 0.00 0.00 3.49
33 34 4.178540 GTGTCTAATACCGTTGCTGCTAA 58.821 43.478 0.00 0.00 0.00 3.09
34 35 4.809426 GTGTCTAATACCGTTGCTGCTAAT 59.191 41.667 0.00 0.00 0.00 1.73
35 36 4.808895 TGTCTAATACCGTTGCTGCTAATG 59.191 41.667 0.00 0.00 0.00 1.90
36 37 3.807622 TCTAATACCGTTGCTGCTAATGC 59.192 43.478 0.00 0.00 40.20 3.56
58 59 7.728847 TGCATACGCATAGATAGACAAAATT 57.271 32.000 0.00 0.00 45.36 1.82
59 60 8.825667 TGCATACGCATAGATAGACAAAATTA 57.174 30.769 0.00 0.00 45.36 1.40
60 61 9.435688 TGCATACGCATAGATAGACAAAATTAT 57.564 29.630 0.00 0.00 45.36 1.28
61 62 9.694520 GCATACGCATAGATAGACAAAATTATG 57.305 33.333 0.00 0.00 38.36 1.90
65 66 9.109393 ACGCATAGATAGACAAAATTATGTTGT 57.891 29.630 0.00 0.00 41.84 3.32
66 67 9.373750 CGCATAGATAGACAAAATTATGTTGTG 57.626 33.333 5.38 0.00 39.29 3.33
70 71 8.340618 AGATAGACAAAATTATGTTGTGTGCT 57.659 30.769 5.38 1.84 39.29 4.40
71 72 9.448438 AGATAGACAAAATTATGTTGTGTGCTA 57.552 29.630 5.38 2.09 39.29 3.49
72 73 9.708222 GATAGACAAAATTATGTTGTGTGCTAG 57.292 33.333 5.38 0.00 39.29 3.42
73 74 6.381801 AGACAAAATTATGTTGTGTGCTAGC 58.618 36.000 8.10 8.10 39.29 3.42
74 75 6.207417 AGACAAAATTATGTTGTGTGCTAGCT 59.793 34.615 17.23 0.00 39.29 3.32
75 76 7.390440 AGACAAAATTATGTTGTGTGCTAGCTA 59.610 33.333 17.23 1.87 39.29 3.32
76 77 8.055279 ACAAAATTATGTTGTGTGCTAGCTAT 57.945 30.769 17.23 2.08 37.80 2.97
77 78 7.970061 ACAAAATTATGTTGTGTGCTAGCTATG 59.030 33.333 17.23 0.00 37.80 2.23
78 79 6.624352 AATTATGTTGTGTGCTAGCTATGG 57.376 37.500 17.23 0.00 0.00 2.74
79 80 2.401583 TGTTGTGTGCTAGCTATGGG 57.598 50.000 17.23 0.00 0.00 4.00
80 81 1.905894 TGTTGTGTGCTAGCTATGGGA 59.094 47.619 17.23 0.00 0.00 4.37
81 82 2.093500 TGTTGTGTGCTAGCTATGGGAG 60.093 50.000 17.23 0.00 0.00 4.30
91 92 1.854227 GCTATGGGAGCGTGTACTTC 58.146 55.000 0.00 0.00 42.62 3.01
92 93 1.409427 GCTATGGGAGCGTGTACTTCT 59.591 52.381 0.00 0.00 42.62 2.85
93 94 2.621998 GCTATGGGAGCGTGTACTTCTA 59.378 50.000 0.00 0.00 42.62 2.10
94 95 3.550436 GCTATGGGAGCGTGTACTTCTAC 60.550 52.174 0.00 0.00 42.62 2.59
95 96 2.211250 TGGGAGCGTGTACTTCTACT 57.789 50.000 0.00 0.00 0.00 2.57
96 97 3.354948 TGGGAGCGTGTACTTCTACTA 57.645 47.619 0.00 0.00 0.00 1.82
97 98 3.012518 TGGGAGCGTGTACTTCTACTAC 58.987 50.000 0.00 0.00 0.00 2.73
98 99 3.277715 GGGAGCGTGTACTTCTACTACT 58.722 50.000 0.00 0.00 0.00 2.57
99 100 4.080919 TGGGAGCGTGTACTTCTACTACTA 60.081 45.833 0.00 0.00 0.00 1.82
100 101 5.062528 GGGAGCGTGTACTTCTACTACTAT 58.937 45.833 0.00 0.00 0.00 2.12
101 102 5.530543 GGGAGCGTGTACTTCTACTACTATT 59.469 44.000 0.00 0.00 0.00 1.73
102 103 6.708054 GGGAGCGTGTACTTCTACTACTATTA 59.292 42.308 0.00 0.00 0.00 0.98
103 104 7.390162 GGGAGCGTGTACTTCTACTACTATTAT 59.610 40.741 0.00 0.00 0.00 1.28
104 105 8.782144 GGAGCGTGTACTTCTACTACTATTATT 58.218 37.037 0.00 0.00 0.00 1.40
137 138 9.383519 TGATCTACTATTGTTTCTCATTTGTCC 57.616 33.333 0.00 0.00 0.00 4.02
138 139 7.827819 TCTACTATTGTTTCTCATTTGTCCG 57.172 36.000 0.00 0.00 0.00 4.79
139 140 7.383687 TCTACTATTGTTTCTCATTTGTCCGT 58.616 34.615 0.00 0.00 0.00 4.69
140 141 8.525316 TCTACTATTGTTTCTCATTTGTCCGTA 58.475 33.333 0.00 0.00 0.00 4.02
141 142 9.314321 CTACTATTGTTTCTCATTTGTCCGTAT 57.686 33.333 0.00 0.00 0.00 3.06
143 144 9.832445 ACTATTGTTTCTCATTTGTCCGTATAT 57.168 29.630 0.00 0.00 0.00 0.86
147 148 9.607988 TTGTTTCTCATTTGTCCGTATATATGT 57.392 29.630 0.00 0.00 0.00 2.29
148 149 9.607988 TGTTTCTCATTTGTCCGTATATATGTT 57.392 29.630 0.00 0.00 0.00 2.71
168 169 7.899178 ATGTTATACAGATTGTTGTGACGAA 57.101 32.000 0.00 0.00 32.56 3.85
169 170 7.716768 TGTTATACAGATTGTTGTGACGAAA 57.283 32.000 0.00 0.00 32.56 3.46
170 171 8.144155 TGTTATACAGATTGTTGTGACGAAAA 57.856 30.769 0.00 0.00 32.56 2.29
171 172 8.613482 TGTTATACAGATTGTTGTGACGAAAAA 58.387 29.630 0.00 0.00 32.56 1.94
196 197 8.611654 AAAACAATATGATCTTTTGCAAAGCT 57.388 26.923 12.41 0.95 0.00 3.74
197 198 7.591006 AACAATATGATCTTTTGCAAAGCTG 57.409 32.000 12.41 7.21 0.00 4.24
198 199 6.694447 ACAATATGATCTTTTGCAAAGCTGT 58.306 32.000 12.41 0.20 0.00 4.40
199 200 6.588756 ACAATATGATCTTTTGCAAAGCTGTG 59.411 34.615 12.41 0.00 0.00 3.66
200 201 4.595762 ATGATCTTTTGCAAAGCTGTGT 57.404 36.364 12.41 0.00 0.00 3.72
201 202 4.389890 TGATCTTTTGCAAAGCTGTGTT 57.610 36.364 12.41 0.00 0.00 3.32
202 203 4.114073 TGATCTTTTGCAAAGCTGTGTTG 58.886 39.130 12.41 0.00 0.00 3.33
203 204 2.891112 TCTTTTGCAAAGCTGTGTTGG 58.109 42.857 12.41 0.00 0.00 3.77
204 205 2.495270 TCTTTTGCAAAGCTGTGTTGGA 59.505 40.909 12.41 0.00 0.00 3.53
205 206 2.292103 TTTGCAAAGCTGTGTTGGAC 57.708 45.000 8.05 0.00 0.00 4.02
206 207 1.473258 TTGCAAAGCTGTGTTGGACT 58.527 45.000 5.61 0.00 0.00 3.85
207 208 0.740149 TGCAAAGCTGTGTTGGACTG 59.260 50.000 5.61 0.00 0.00 3.51
208 209 1.024271 GCAAAGCTGTGTTGGACTGA 58.976 50.000 5.61 0.00 0.00 3.41
209 210 1.405105 GCAAAGCTGTGTTGGACTGAA 59.595 47.619 5.61 0.00 0.00 3.02
210 211 2.035066 GCAAAGCTGTGTTGGACTGAAT 59.965 45.455 5.61 0.00 0.00 2.57
211 212 3.635331 CAAAGCTGTGTTGGACTGAATG 58.365 45.455 0.00 0.00 0.00 2.67
212 213 2.936919 AGCTGTGTTGGACTGAATGA 57.063 45.000 0.00 0.00 0.00 2.57
213 214 3.430042 AGCTGTGTTGGACTGAATGAT 57.570 42.857 0.00 0.00 0.00 2.45
214 215 3.759581 AGCTGTGTTGGACTGAATGATT 58.240 40.909 0.00 0.00 0.00 2.57
215 216 4.147321 AGCTGTGTTGGACTGAATGATTT 58.853 39.130 0.00 0.00 0.00 2.17
216 217 4.022589 AGCTGTGTTGGACTGAATGATTTG 60.023 41.667 0.00 0.00 0.00 2.32
217 218 4.261741 GCTGTGTTGGACTGAATGATTTGT 60.262 41.667 0.00 0.00 0.00 2.83
218 219 5.048782 GCTGTGTTGGACTGAATGATTTGTA 60.049 40.000 0.00 0.00 0.00 2.41
219 220 6.558771 TGTGTTGGACTGAATGATTTGTAG 57.441 37.500 0.00 0.00 0.00 2.74
220 221 6.061441 TGTGTTGGACTGAATGATTTGTAGT 58.939 36.000 0.00 0.00 0.00 2.73
221 222 6.204688 TGTGTTGGACTGAATGATTTGTAGTC 59.795 38.462 8.65 8.65 37.60 2.59
222 223 5.408299 TGTTGGACTGAATGATTTGTAGTCG 59.592 40.000 10.10 0.00 38.84 4.18
223 224 5.400066 TGGACTGAATGATTTGTAGTCGA 57.600 39.130 10.10 5.83 38.84 4.20
224 225 5.789521 TGGACTGAATGATTTGTAGTCGAA 58.210 37.500 10.10 2.44 38.84 3.71
225 226 6.406370 TGGACTGAATGATTTGTAGTCGAAT 58.594 36.000 10.10 0.00 38.84 3.34
226 227 6.878923 TGGACTGAATGATTTGTAGTCGAATT 59.121 34.615 0.00 0.00 38.84 2.17
227 228 8.038351 TGGACTGAATGATTTGTAGTCGAATTA 58.962 33.333 0.00 0.00 38.84 1.40
228 229 9.046296 GGACTGAATGATTTGTAGTCGAATTAT 57.954 33.333 0.00 0.00 38.84 1.28
229 230 9.855361 GACTGAATGATTTGTAGTCGAATTATG 57.145 33.333 0.00 0.00 0.00 1.90
230 231 9.383519 ACTGAATGATTTGTAGTCGAATTATGT 57.616 29.630 0.00 0.00 0.00 2.29
232 233 9.986833 TGAATGATTTGTAGTCGAATTATGTTG 57.013 29.630 0.00 0.00 0.00 3.33
233 234 9.988350 GAATGATTTGTAGTCGAATTATGTTGT 57.012 29.630 0.00 0.00 0.00 3.32
236 237 9.605955 TGATTTGTAGTCGAATTATGTTGTTTG 57.394 29.630 0.00 0.00 0.00 2.93
237 238 9.820229 GATTTGTAGTCGAATTATGTTGTTTGA 57.180 29.630 0.00 0.00 0.00 2.69
252 253 7.713764 TGTTGTTTGATATACATGAGGATCG 57.286 36.000 0.00 0.00 38.61 3.69
253 254 7.272244 TGTTGTTTGATATACATGAGGATCGT 58.728 34.615 0.00 0.00 38.61 3.73
254 255 8.417884 TGTTGTTTGATATACATGAGGATCGTA 58.582 33.333 0.00 0.00 38.61 3.43
255 256 9.256477 GTTGTTTGATATACATGAGGATCGTAA 57.744 33.333 0.00 0.00 38.61 3.18
256 257 9.825109 TTGTTTGATATACATGAGGATCGTAAA 57.175 29.630 0.00 0.00 38.61 2.01
257 258 9.825109 TGTTTGATATACATGAGGATCGTAAAA 57.175 29.630 0.00 0.00 38.61 1.52
265 266 9.778741 ATACATGAGGATCGTAAAATTATGTGT 57.221 29.630 0.00 0.00 38.61 3.72
266 267 8.506168 ACATGAGGATCGTAAAATTATGTGTT 57.494 30.769 0.00 0.00 38.61 3.32
267 268 9.607988 ACATGAGGATCGTAAAATTATGTGTTA 57.392 29.630 0.00 0.00 38.61 2.41
270 271 9.309516 TGAGGATCGTAAAATTATGTGTTAGAC 57.690 33.333 0.00 0.00 38.61 2.59
271 272 9.309516 GAGGATCGTAAAATTATGTGTTAGACA 57.690 33.333 0.00 0.00 39.53 3.41
273 274 9.864034 GGATCGTAAAATTATGTGTTAGACATG 57.136 33.333 5.20 0.00 45.43 3.21
309 310 8.980143 AAATATTAAAATTGTCTGTTGTCCCG 57.020 30.769 0.00 0.00 0.00 5.14
310 311 7.696992 ATATTAAAATTGTCTGTTGTCCCGT 57.303 32.000 0.00 0.00 0.00 5.28
311 312 8.795842 ATATTAAAATTGTCTGTTGTCCCGTA 57.204 30.769 0.00 0.00 0.00 4.02
312 313 6.548441 TTAAAATTGTCTGTTGTCCCGTAG 57.452 37.500 0.00 0.00 0.00 3.51
313 314 2.094762 ATTGTCTGTTGTCCCGTAGC 57.905 50.000 0.00 0.00 0.00 3.58
314 315 0.753867 TTGTCTGTTGTCCCGTAGCA 59.246 50.000 0.00 0.00 0.00 3.49
315 316 0.753867 TGTCTGTTGTCCCGTAGCAA 59.246 50.000 0.00 0.00 0.00 3.91
316 317 1.139256 TGTCTGTTGTCCCGTAGCAAA 59.861 47.619 0.00 0.00 0.00 3.68
317 318 1.529865 GTCTGTTGTCCCGTAGCAAAC 59.470 52.381 0.00 0.00 0.00 2.93
325 326 3.039588 CGTAGCAAACGCACGGGT 61.040 61.111 0.00 0.00 46.10 5.28
326 327 1.733758 CGTAGCAAACGCACGGGTA 60.734 57.895 0.00 0.00 46.10 3.69
327 328 1.283613 CGTAGCAAACGCACGGGTAA 61.284 55.000 0.00 0.00 46.10 2.85
328 329 1.081094 GTAGCAAACGCACGGGTAAT 58.919 50.000 0.00 0.00 0.00 1.89
329 330 1.465777 GTAGCAAACGCACGGGTAATT 59.534 47.619 0.00 0.00 0.00 1.40
330 331 1.810959 AGCAAACGCACGGGTAATTA 58.189 45.000 0.00 0.00 0.00 1.40
331 332 2.361789 AGCAAACGCACGGGTAATTAT 58.638 42.857 0.00 0.00 0.00 1.28
332 333 2.353579 AGCAAACGCACGGGTAATTATC 59.646 45.455 0.00 0.00 0.00 1.75
333 334 2.353579 GCAAACGCACGGGTAATTATCT 59.646 45.455 0.00 0.00 0.00 1.98
334 335 3.556775 GCAAACGCACGGGTAATTATCTA 59.443 43.478 0.00 0.00 0.00 1.98
335 336 4.318546 GCAAACGCACGGGTAATTATCTAG 60.319 45.833 0.00 0.00 0.00 2.43
336 337 4.660789 AACGCACGGGTAATTATCTAGT 57.339 40.909 0.00 0.00 0.00 2.57
337 338 5.772825 AACGCACGGGTAATTATCTAGTA 57.227 39.130 0.00 0.00 0.00 1.82
338 339 5.772825 ACGCACGGGTAATTATCTAGTAA 57.227 39.130 0.00 0.00 0.00 2.24
339 340 5.766222 ACGCACGGGTAATTATCTAGTAAG 58.234 41.667 0.00 0.00 0.00 2.34
340 341 5.300286 ACGCACGGGTAATTATCTAGTAAGT 59.700 40.000 0.00 0.00 0.00 2.24
387 388 3.181470 GCAACCAAACAAAGGCTTCCTAA 60.181 43.478 0.00 0.00 31.13 2.69
388 389 4.368315 CAACCAAACAAAGGCTTCCTAAC 58.632 43.478 0.00 0.00 31.13 2.34
389 390 3.637769 ACCAAACAAAGGCTTCCTAACA 58.362 40.909 0.00 0.00 31.13 2.41
390 391 3.383505 ACCAAACAAAGGCTTCCTAACAC 59.616 43.478 0.00 0.00 31.13 3.32
391 392 3.243737 CCAAACAAAGGCTTCCTAACACC 60.244 47.826 0.00 0.00 31.13 4.16
392 393 2.287977 ACAAAGGCTTCCTAACACCC 57.712 50.000 0.00 0.00 31.13 4.61
393 394 1.497286 ACAAAGGCTTCCTAACACCCA 59.503 47.619 0.00 0.00 31.13 4.51
394 395 2.091555 ACAAAGGCTTCCTAACACCCAA 60.092 45.455 0.00 0.00 31.13 4.12
395 396 2.287977 AAGGCTTCCTAACACCCAAC 57.712 50.000 0.00 0.00 31.13 3.77
396 397 0.036306 AGGCTTCCTAACACCCAACG 59.964 55.000 0.00 0.00 28.47 4.10
397 398 0.035739 GGCTTCCTAACACCCAACGA 59.964 55.000 0.00 0.00 0.00 3.85
398 399 1.543871 GGCTTCCTAACACCCAACGAA 60.544 52.381 0.00 0.00 0.00 3.85
399 400 2.433436 GCTTCCTAACACCCAACGAAT 58.567 47.619 0.00 0.00 0.00 3.34
400 401 3.602483 GCTTCCTAACACCCAACGAATA 58.398 45.455 0.00 0.00 0.00 1.75
401 402 4.196971 GCTTCCTAACACCCAACGAATAT 58.803 43.478 0.00 0.00 0.00 1.28
402 403 4.272748 GCTTCCTAACACCCAACGAATATC 59.727 45.833 0.00 0.00 0.00 1.63
403 404 4.411256 TCCTAACACCCAACGAATATCC 57.589 45.455 0.00 0.00 0.00 2.59
404 405 3.135167 TCCTAACACCCAACGAATATCCC 59.865 47.826 0.00 0.00 0.00 3.85
405 406 2.430248 AACACCCAACGAATATCCCC 57.570 50.000 0.00 0.00 0.00 4.81
406 407 0.179468 ACACCCAACGAATATCCCCG 59.821 55.000 0.00 0.00 0.00 5.73
407 408 1.147600 ACCCAACGAATATCCCCGC 59.852 57.895 0.00 0.00 0.00 6.13
408 409 1.147376 CCCAACGAATATCCCCGCA 59.853 57.895 0.00 0.00 0.00 5.69
409 410 0.464735 CCCAACGAATATCCCCGCAA 60.465 55.000 0.00 0.00 0.00 4.85
410 411 1.384525 CCAACGAATATCCCCGCAAA 58.615 50.000 0.00 0.00 0.00 3.68
411 412 1.746220 CCAACGAATATCCCCGCAAAA 59.254 47.619 0.00 0.00 0.00 2.44
412 413 2.164624 CCAACGAATATCCCCGCAAAAA 59.835 45.455 0.00 0.00 0.00 1.94
732 743 1.073199 CCGCAAACTCCCCTTGACT 59.927 57.895 0.00 0.00 0.00 3.41
817 828 6.374894 TCGGATTTGGATAAAACAAATACCGT 59.625 34.615 23.87 2.85 45.60 4.83
1230 1243 2.356135 TCCTTCTTACAAATGCCGCTC 58.644 47.619 0.00 0.00 0.00 5.03
1247 1260 2.135933 GCTCGCAACCATCATACTACC 58.864 52.381 0.00 0.00 0.00 3.18
1281 1294 1.062587 GCGATCTACAAAGCGTTGCAT 59.937 47.619 12.54 2.24 38.39 3.96
1321 1334 4.499040 GGCATTATGTGTCGTTTGTTATGC 59.501 41.667 0.00 0.00 36.14 3.14
1336 1349 7.566709 GTTTGTTATGCCAATCTTGACTTTTG 58.433 34.615 0.00 0.00 0.00 2.44
1368 1382 6.956299 AACAAATGCTAATCTGATTGCAAC 57.044 33.333 22.10 0.00 38.96 4.17
1373 1387 4.912214 TGCTAATCTGATTGCAACAATCG 58.088 39.130 18.51 9.65 32.12 3.34
1425 1440 6.712095 TGTCAACTGTCAAGATAATTCTGCTT 59.288 34.615 0.00 0.00 30.72 3.91
1508 1528 0.841961 ATGCCTGCCTGCTAATCTGA 59.158 50.000 0.00 0.00 0.00 3.27
1690 1716 4.521062 CTGAAGGCCTCCGCGGAG 62.521 72.222 41.90 41.90 41.63 4.63
1735 1761 4.265056 GGCTCCACCAACCACCGT 62.265 66.667 0.00 0.00 38.86 4.83
2042 2068 6.509418 TTGTCAAGTCTAATGGGTAATTGC 57.491 37.500 0.00 0.00 0.00 3.56
2115 2143 2.632028 CCATACTGGAGTCAGATGGAGG 59.368 54.545 14.13 0.00 43.48 4.30
2172 2200 7.645058 TTCATTTTCTCCCATATGACCTTTC 57.355 36.000 3.65 0.00 0.00 2.62
2443 2471 3.131933 CAGTGAATCTGAAGACCCTCGAT 59.868 47.826 0.00 0.00 46.27 3.59
2839 2867 6.600427 TGTTGACTACTCCATACAGATTACGA 59.400 38.462 0.00 0.00 0.00 3.43
2923 2952 7.290948 ACAAATTCCAATCTTCTCCTTCCTTTT 59.709 33.333 0.00 0.00 0.00 2.27
3178 3789 1.965754 GATGAAGCCAGCGGAGGAGT 61.966 60.000 0.00 0.00 0.00 3.85
3184 3795 1.522569 CCAGCGGAGGAGTAAAGGG 59.477 63.158 0.00 0.00 0.00 3.95
3185 3796 0.976073 CCAGCGGAGGAGTAAAGGGA 60.976 60.000 0.00 0.00 0.00 4.20
3186 3797 0.902531 CAGCGGAGGAGTAAAGGGAA 59.097 55.000 0.00 0.00 0.00 3.97
3187 3798 1.278127 CAGCGGAGGAGTAAAGGGAAA 59.722 52.381 0.00 0.00 0.00 3.13
3188 3799 1.555533 AGCGGAGGAGTAAAGGGAAAG 59.444 52.381 0.00 0.00 0.00 2.62
3189 3800 2.012554 GCGGAGGAGTAAAGGGAAAGC 61.013 57.143 0.00 0.00 0.00 3.51
3190 3801 1.739371 CGGAGGAGTAAAGGGAAAGCG 60.739 57.143 0.00 0.00 0.00 4.68
3191 3802 1.370609 GAGGAGTAAAGGGAAAGCGC 58.629 55.000 0.00 0.00 0.00 5.92
3192 3803 0.035343 AGGAGTAAAGGGAAAGCGCC 60.035 55.000 2.29 0.00 0.00 6.53
3193 3804 0.322187 GGAGTAAAGGGAAAGCGCCA 60.322 55.000 2.29 0.00 0.00 5.69
3194 3805 1.530323 GAGTAAAGGGAAAGCGCCAA 58.470 50.000 2.29 0.00 0.00 4.52
3195 3806 1.883926 GAGTAAAGGGAAAGCGCCAAA 59.116 47.619 2.29 0.00 0.00 3.28
3196 3807 1.886542 AGTAAAGGGAAAGCGCCAAAG 59.113 47.619 2.29 0.00 0.00 2.77
3197 3808 0.601057 TAAAGGGAAAGCGCCAAAGC 59.399 50.000 2.29 0.00 37.41 3.51
3239 3850 2.029369 GGCGACGGTGTGGTACAA 59.971 61.111 0.00 0.00 44.16 2.41
3240 3851 2.312436 GGCGACGGTGTGGTACAAC 61.312 63.158 0.00 0.00 44.16 3.32
3241 3852 2.312436 GCGACGGTGTGGTACAACC 61.312 63.158 0.00 0.00 44.16 3.77
3242 3853 1.665599 CGACGGTGTGGTACAACCC 60.666 63.158 0.00 0.00 44.16 4.11
3246 3857 2.849081 GGTGTGGTACAACCCGATG 58.151 57.895 0.00 0.00 44.16 3.84
3247 3858 1.303091 GGTGTGGTACAACCCGATGC 61.303 60.000 0.00 0.00 44.16 3.91
3248 3859 1.003112 TGTGGTACAACCCGATGCC 60.003 57.895 0.00 0.00 44.16 4.40
3249 3860 2.104253 GTGGTACAACCCGATGCCG 61.104 63.158 0.00 0.00 44.16 5.69
3293 3904 2.126071 CGCTGTCAGGGTGTACGG 60.126 66.667 8.71 0.00 0.00 4.02
3294 3905 2.927580 CGCTGTCAGGGTGTACGGT 61.928 63.158 8.71 0.00 0.00 4.83
3333 3944 2.434884 CACTTCGGCCATGCTCGT 60.435 61.111 2.24 0.00 0.00 4.18
3379 3990 1.002274 GAGCTCTCCTCCCCTTCCA 59.998 63.158 6.43 0.00 34.35 3.53
3474 4085 1.931635 TTCCCCAACACCTATTTGCC 58.068 50.000 0.00 0.00 0.00 4.52
3475 4086 0.040499 TCCCCAACACCTATTTGCCC 59.960 55.000 0.00 0.00 0.00 5.36
3492 4103 2.930826 CCCGTGGGCTATGTTAGAAT 57.069 50.000 0.00 0.00 0.00 2.40
3494 4105 3.660865 CCCGTGGGCTATGTTAGAATAC 58.339 50.000 0.00 0.00 0.00 1.89
3495 4106 3.070446 CCCGTGGGCTATGTTAGAATACA 59.930 47.826 0.00 0.00 0.00 2.29
3496 4107 4.443739 CCCGTGGGCTATGTTAGAATACAA 60.444 45.833 0.00 0.00 0.00 2.41
3497 4108 4.510340 CCGTGGGCTATGTTAGAATACAAC 59.490 45.833 0.00 0.00 0.00 3.32
3498 4109 5.357257 CGTGGGCTATGTTAGAATACAACT 58.643 41.667 0.00 0.00 0.00 3.16
3499 4110 5.815740 CGTGGGCTATGTTAGAATACAACTT 59.184 40.000 0.00 0.00 0.00 2.66
3500 4111 6.238103 CGTGGGCTATGTTAGAATACAACTTG 60.238 42.308 0.00 0.00 0.00 3.16
3501 4112 6.598064 GTGGGCTATGTTAGAATACAACTTGT 59.402 38.462 0.00 0.00 0.00 3.16
3502 4113 7.767198 GTGGGCTATGTTAGAATACAACTTGTA 59.233 37.037 4.08 4.08 37.24 2.41
3503 4114 8.322828 TGGGCTATGTTAGAATACAACTTGTAA 58.677 33.333 5.73 0.00 36.31 2.41
3504 4115 9.338622 GGGCTATGTTAGAATACAACTTGTAAT 57.661 33.333 5.73 0.00 36.31 1.89
3518 4129 7.793036 ACAACTTGTAATAGGATTAGGACTCC 58.207 38.462 0.00 0.00 0.00 3.85
3519 4130 7.624077 ACAACTTGTAATAGGATTAGGACTCCT 59.376 37.037 2.31 2.31 45.22 3.69
3520 4131 9.144298 CAACTTGTAATAGGATTAGGACTCCTA 57.856 37.037 0.03 0.03 46.66 2.94
3521 4132 8.709272 ACTTGTAATAGGATTAGGACTCCTAC 57.291 38.462 4.08 0.00 45.72 3.18
3522 4133 8.512813 ACTTGTAATAGGATTAGGACTCCTACT 58.487 37.037 4.08 0.00 45.72 2.57
3523 4134 8.937207 TTGTAATAGGATTAGGACTCCTACTC 57.063 38.462 12.24 12.24 45.72 2.59
3524 4135 7.166851 TGTAATAGGATTAGGACTCCTACTCG 58.833 42.308 13.66 0.00 45.72 4.18
3525 4136 3.512219 AGGATTAGGACTCCTACTCGG 57.488 52.381 13.66 0.00 41.42 4.63
3526 4137 2.784682 AGGATTAGGACTCCTACTCGGT 59.215 50.000 13.66 4.16 41.42 4.69
3527 4138 3.204831 AGGATTAGGACTCCTACTCGGTT 59.795 47.826 13.66 3.08 41.42 4.44
3528 4139 3.959449 GGATTAGGACTCCTACTCGGTTT 59.041 47.826 13.66 0.00 36.87 3.27
3529 4140 4.202131 GGATTAGGACTCCTACTCGGTTTG 60.202 50.000 13.66 0.00 36.87 2.93
3530 4141 2.305858 AGGACTCCTACTCGGTTTGT 57.694 50.000 0.00 0.00 28.47 2.83
3531 4142 3.446442 AGGACTCCTACTCGGTTTGTA 57.554 47.619 0.00 0.00 28.47 2.41
3532 4143 3.771216 AGGACTCCTACTCGGTTTGTAA 58.229 45.455 0.00 0.00 28.47 2.41
3533 4144 4.351127 AGGACTCCTACTCGGTTTGTAAT 58.649 43.478 0.00 0.00 28.47 1.89
3534 4145 5.513233 AGGACTCCTACTCGGTTTGTAATA 58.487 41.667 0.00 0.00 28.47 0.98
3535 4146 5.593502 AGGACTCCTACTCGGTTTGTAATAG 59.406 44.000 0.00 0.00 28.47 1.73
3536 4147 5.221204 GGACTCCTACTCGGTTTGTAATAGG 60.221 48.000 0.00 0.00 0.00 2.57
3537 4148 4.648307 ACTCCTACTCGGTTTGTAATAGGG 59.352 45.833 0.00 0.00 31.80 3.53
3538 4149 3.385755 TCCTACTCGGTTTGTAATAGGGC 59.614 47.826 0.00 0.00 31.80 5.19
3539 4150 3.387050 CCTACTCGGTTTGTAATAGGGCT 59.613 47.826 0.00 0.00 0.00 5.19
3540 4151 4.586001 CCTACTCGGTTTGTAATAGGGCTA 59.414 45.833 0.00 0.00 0.00 3.93
3541 4152 4.667519 ACTCGGTTTGTAATAGGGCTAG 57.332 45.455 0.00 0.00 0.00 3.42
3542 4153 3.387050 ACTCGGTTTGTAATAGGGCTAGG 59.613 47.826 0.00 0.00 0.00 3.02
3543 4154 3.377573 TCGGTTTGTAATAGGGCTAGGT 58.622 45.455 0.00 0.00 0.00 3.08
3544 4155 3.385755 TCGGTTTGTAATAGGGCTAGGTC 59.614 47.826 0.00 0.00 0.00 3.85
3545 4156 3.133362 CGGTTTGTAATAGGGCTAGGTCA 59.867 47.826 0.00 0.00 0.00 4.02
3546 4157 4.704965 GGTTTGTAATAGGGCTAGGTCAG 58.295 47.826 0.00 0.00 0.00 3.51
3547 4158 4.444449 GGTTTGTAATAGGGCTAGGTCAGG 60.444 50.000 0.00 0.00 0.00 3.86
3548 4159 3.700863 TGTAATAGGGCTAGGTCAGGT 57.299 47.619 0.00 0.00 0.00 4.00
3549 4160 3.305720 TGTAATAGGGCTAGGTCAGGTG 58.694 50.000 0.00 0.00 0.00 4.00
3550 4161 1.132500 AATAGGGCTAGGTCAGGTGC 58.868 55.000 0.00 0.00 0.00 5.01
3551 4162 1.115930 ATAGGGCTAGGTCAGGTGCG 61.116 60.000 0.00 0.00 0.00 5.34
3552 4163 4.162690 GGGCTAGGTCAGGTGCGG 62.163 72.222 0.00 0.00 0.00 5.69
3553 4164 4.840005 GGCTAGGTCAGGTGCGGC 62.840 72.222 0.00 0.00 0.00 6.53
3554 4165 3.775654 GCTAGGTCAGGTGCGGCT 61.776 66.667 0.00 0.00 0.00 5.52
3555 4166 2.982130 CTAGGTCAGGTGCGGCTT 59.018 61.111 0.00 0.00 0.00 4.35
3556 4167 1.448540 CTAGGTCAGGTGCGGCTTG 60.449 63.158 0.00 0.00 0.00 4.01
3557 4168 2.859273 CTAGGTCAGGTGCGGCTTGG 62.859 65.000 0.00 0.00 0.00 3.61
3560 4171 4.704833 TCAGGTGCGGCTTGGCTC 62.705 66.667 0.00 0.00 0.00 4.70
3561 4172 4.711949 CAGGTGCGGCTTGGCTCT 62.712 66.667 0.00 0.00 0.00 4.09
3562 4173 3.958860 AGGTGCGGCTTGGCTCTT 61.959 61.111 0.00 0.00 0.00 2.85
3563 4174 2.046314 GGTGCGGCTTGGCTCTTA 60.046 61.111 0.00 0.00 0.00 2.10
3564 4175 1.452108 GGTGCGGCTTGGCTCTTAT 60.452 57.895 0.00 0.00 0.00 1.73
3565 4176 0.179056 GGTGCGGCTTGGCTCTTATA 60.179 55.000 0.00 0.00 0.00 0.98
3566 4177 1.543429 GGTGCGGCTTGGCTCTTATAT 60.543 52.381 0.00 0.00 0.00 0.86
3567 4178 2.289444 GGTGCGGCTTGGCTCTTATATA 60.289 50.000 0.00 0.00 0.00 0.86
3568 4179 3.600388 GTGCGGCTTGGCTCTTATATAT 58.400 45.455 0.00 0.00 0.00 0.86
3569 4180 4.382685 GGTGCGGCTTGGCTCTTATATATA 60.383 45.833 0.00 0.00 0.00 0.86
3570 4181 4.567159 GTGCGGCTTGGCTCTTATATATAC 59.433 45.833 0.00 0.00 0.00 1.47
3571 4182 4.120589 GCGGCTTGGCTCTTATATATACC 58.879 47.826 0.00 0.00 0.00 2.73
3572 4183 4.141914 GCGGCTTGGCTCTTATATATACCT 60.142 45.833 0.00 0.00 0.00 3.08
3573 4184 5.593010 CGGCTTGGCTCTTATATATACCTC 58.407 45.833 0.00 0.00 0.00 3.85
3574 4185 5.361285 CGGCTTGGCTCTTATATATACCTCT 59.639 44.000 0.00 0.00 0.00 3.69
3575 4186 6.127310 CGGCTTGGCTCTTATATATACCTCTT 60.127 42.308 0.00 0.00 0.00 2.85
3576 4187 7.044798 GGCTTGGCTCTTATATATACCTCTTG 58.955 42.308 0.00 0.00 0.00 3.02
3577 4188 7.310734 GGCTTGGCTCTTATATATACCTCTTGT 60.311 40.741 0.00 0.00 0.00 3.16
3578 4189 8.750298 GCTTGGCTCTTATATATACCTCTTGTA 58.250 37.037 0.00 0.00 0.00 2.41
3580 4191 9.824216 TTGGCTCTTATATATACCTCTTGTACT 57.176 33.333 0.00 0.00 30.62 2.73
3581 4192 9.244292 TGGCTCTTATATATACCTCTTGTACTG 57.756 37.037 0.00 0.00 30.62 2.74
3582 4193 8.688151 GGCTCTTATATATACCTCTTGTACTGG 58.312 40.741 0.00 0.00 30.62 4.00
3583 4194 8.192110 GCTCTTATATATACCTCTTGTACTGGC 58.808 40.741 0.00 0.00 30.62 4.85
3584 4195 9.244292 CTCTTATATATACCTCTTGTACTGGCA 57.756 37.037 0.00 0.00 30.62 4.92
3585 4196 9.021807 TCTTATATATACCTCTTGTACTGGCAC 57.978 37.037 0.00 0.00 30.62 5.01
3586 4197 8.715190 TTATATATACCTCTTGTACTGGCACA 57.285 34.615 0.00 0.00 30.62 4.57
3587 4198 5.950544 ATATACCTCTTGTACTGGCACAA 57.049 39.130 0.00 0.00 38.70 3.33
3588 4199 4.844349 ATACCTCTTGTACTGGCACAAT 57.156 40.909 0.00 0.00 38.70 2.71
3589 4200 5.950544 ATACCTCTTGTACTGGCACAATA 57.049 39.130 0.00 0.00 38.70 1.90
3590 4201 4.844349 ACCTCTTGTACTGGCACAATAT 57.156 40.909 0.00 0.00 38.70 1.28
3591 4202 5.179452 ACCTCTTGTACTGGCACAATATT 57.821 39.130 0.00 0.00 38.70 1.28
3592 4203 4.943705 ACCTCTTGTACTGGCACAATATTG 59.056 41.667 14.01 14.01 38.70 1.90
3593 4204 4.201950 CCTCTTGTACTGGCACAATATTGC 60.202 45.833 15.48 2.93 38.70 3.56
3594 4205 4.331108 TCTTGTACTGGCACAATATTGCA 58.669 39.130 15.48 4.86 44.94 4.08
3595 4206 4.949238 TCTTGTACTGGCACAATATTGCAT 59.051 37.500 15.48 0.00 44.94 3.96
3596 4207 4.898829 TGTACTGGCACAATATTGCATC 57.101 40.909 15.48 5.60 44.94 3.91
3597 4208 4.268359 TGTACTGGCACAATATTGCATCA 58.732 39.130 15.48 9.60 44.94 3.07
3598 4209 4.704057 TGTACTGGCACAATATTGCATCAA 59.296 37.500 15.48 0.00 44.94 2.57
3599 4210 4.114058 ACTGGCACAATATTGCATCAAC 57.886 40.909 15.48 1.47 44.94 3.18
3600 4211 3.510753 ACTGGCACAATATTGCATCAACA 59.489 39.130 15.48 5.70 44.94 3.33
3601 4212 4.021280 ACTGGCACAATATTGCATCAACAA 60.021 37.500 15.48 0.00 44.94 2.83
3602 4213 5.087391 TGGCACAATATTGCATCAACAAT 57.913 34.783 15.48 0.00 44.94 2.71
3603 4214 5.489249 TGGCACAATATTGCATCAACAATT 58.511 33.333 15.48 0.00 44.94 2.32
3604 4215 6.637657 TGGCACAATATTGCATCAACAATTA 58.362 32.000 15.48 0.00 44.94 1.40
3605 4216 7.273712 TGGCACAATATTGCATCAACAATTAT 58.726 30.769 15.48 0.00 44.94 1.28
3606 4217 7.769507 TGGCACAATATTGCATCAACAATTATT 59.230 29.630 15.48 0.00 44.94 1.40
3607 4218 8.277713 GGCACAATATTGCATCAACAATTATTC 58.722 33.333 15.48 0.00 44.94 1.75
3608 4219 8.819015 GCACAATATTGCATCAACAATTATTCA 58.181 29.630 15.48 0.00 42.49 2.57
3632 4243 9.764363 TCAATACAATTCTACATGGTATCAGAC 57.236 33.333 0.00 0.00 0.00 3.51
3633 4244 9.770097 CAATACAATTCTACATGGTATCAGACT 57.230 33.333 0.00 0.00 0.00 3.24
3636 4247 8.723942 ACAATTCTACATGGTATCAGACTTTC 57.276 34.615 0.00 0.00 0.00 2.62
3637 4248 7.492669 ACAATTCTACATGGTATCAGACTTTCG 59.507 37.037 0.00 0.00 0.00 3.46
3638 4249 6.769134 TTCTACATGGTATCAGACTTTCGA 57.231 37.500 0.00 0.00 0.00 3.71
3639 4250 6.961360 TCTACATGGTATCAGACTTTCGAT 57.039 37.500 0.00 0.00 0.00 3.59
3640 4251 6.971602 TCTACATGGTATCAGACTTTCGATC 58.028 40.000 0.00 0.00 0.00 3.69
3641 4252 4.950050 ACATGGTATCAGACTTTCGATCC 58.050 43.478 0.00 0.00 0.00 3.36
3642 4253 4.651503 ACATGGTATCAGACTTTCGATCCT 59.348 41.667 0.00 0.00 0.00 3.24
3643 4254 5.833667 ACATGGTATCAGACTTTCGATCCTA 59.166 40.000 0.00 0.00 0.00 2.94
3644 4255 6.015856 ACATGGTATCAGACTTTCGATCCTAG 60.016 42.308 0.00 0.00 0.00 3.02
3645 4256 4.827835 TGGTATCAGACTTTCGATCCTAGG 59.172 45.833 0.82 0.82 0.00 3.02
3646 4257 4.218852 GGTATCAGACTTTCGATCCTAGGG 59.781 50.000 9.46 0.00 0.00 3.53
3647 4258 3.383698 TCAGACTTTCGATCCTAGGGT 57.616 47.619 9.46 0.00 0.00 4.34
3648 4259 4.515028 TCAGACTTTCGATCCTAGGGTA 57.485 45.455 9.46 0.00 0.00 3.69
3649 4260 5.063017 TCAGACTTTCGATCCTAGGGTAT 57.937 43.478 9.46 0.00 0.00 2.73
3650 4261 4.827835 TCAGACTTTCGATCCTAGGGTATG 59.172 45.833 9.46 4.70 0.00 2.39
3651 4262 4.021894 CAGACTTTCGATCCTAGGGTATGG 60.022 50.000 9.46 0.00 0.00 2.74
3652 4263 2.633481 ACTTTCGATCCTAGGGTATGGC 59.367 50.000 9.46 0.00 0.00 4.40
3653 4264 2.696526 TTCGATCCTAGGGTATGGCT 57.303 50.000 9.46 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.244249 GGTATTAGACACATGCCCCTCTC 60.244 52.174 0.00 0.00 0.00 3.20
1 2 2.706190 GGTATTAGACACATGCCCCTCT 59.294 50.000 0.00 0.00 0.00 3.69
2 3 2.548067 CGGTATTAGACACATGCCCCTC 60.548 54.545 0.00 0.00 0.00 4.30
3 4 1.416401 CGGTATTAGACACATGCCCCT 59.584 52.381 0.00 0.00 0.00 4.79
4 5 1.140252 ACGGTATTAGACACATGCCCC 59.860 52.381 0.00 0.00 0.00 5.80
5 6 2.612212 CAACGGTATTAGACACATGCCC 59.388 50.000 0.00 0.00 0.00 5.36
6 7 2.031683 GCAACGGTATTAGACACATGCC 59.968 50.000 0.00 0.00 0.00 4.40
7 8 2.936498 AGCAACGGTATTAGACACATGC 59.064 45.455 0.00 0.00 0.00 4.06
8 9 3.242413 GCAGCAACGGTATTAGACACATG 60.242 47.826 0.00 0.00 0.00 3.21
9 10 2.936498 GCAGCAACGGTATTAGACACAT 59.064 45.455 0.00 0.00 0.00 3.21
10 11 2.028476 AGCAGCAACGGTATTAGACACA 60.028 45.455 0.00 0.00 0.00 3.72
11 12 2.618053 AGCAGCAACGGTATTAGACAC 58.382 47.619 0.00 0.00 0.00 3.67
12 13 4.459390 TTAGCAGCAACGGTATTAGACA 57.541 40.909 0.00 0.00 0.00 3.41
13 14 4.318831 GCATTAGCAGCAACGGTATTAGAC 60.319 45.833 0.00 0.00 41.58 2.59
14 15 3.807622 GCATTAGCAGCAACGGTATTAGA 59.192 43.478 0.00 0.00 41.58 2.10
15 16 4.133856 GCATTAGCAGCAACGGTATTAG 57.866 45.455 0.00 0.00 41.58 1.73
35 36 9.694520 CATAATTTTGTCTATCTATGCGTATGC 57.305 33.333 0.00 0.00 43.20 3.14
39 40 9.109393 ACAACATAATTTTGTCTATCTATGCGT 57.891 29.630 1.83 0.00 31.30 5.24
40 41 9.373750 CACAACATAATTTTGTCTATCTATGCG 57.626 33.333 1.83 0.00 34.91 4.73
44 45 9.448438 AGCACACAACATAATTTTGTCTATCTA 57.552 29.630 1.83 0.00 34.91 1.98
45 46 8.340618 AGCACACAACATAATTTTGTCTATCT 57.659 30.769 1.83 0.00 34.91 1.98
46 47 9.708222 CTAGCACACAACATAATTTTGTCTATC 57.292 33.333 1.83 0.00 34.91 2.08
47 48 8.184192 GCTAGCACACAACATAATTTTGTCTAT 58.816 33.333 10.63 0.00 34.91 1.98
48 49 7.390440 AGCTAGCACACAACATAATTTTGTCTA 59.610 33.333 18.83 0.00 34.91 2.59
49 50 6.207417 AGCTAGCACACAACATAATTTTGTCT 59.793 34.615 18.83 0.00 34.91 3.41
50 51 6.381801 AGCTAGCACACAACATAATTTTGTC 58.618 36.000 18.83 0.00 34.91 3.18
51 52 6.331369 AGCTAGCACACAACATAATTTTGT 57.669 33.333 18.83 0.00 37.69 2.83
52 53 7.433131 CCATAGCTAGCACACAACATAATTTTG 59.567 37.037 18.83 0.00 0.00 2.44
53 54 7.416664 CCCATAGCTAGCACACAACATAATTTT 60.417 37.037 18.83 0.00 0.00 1.82
54 55 6.039717 CCCATAGCTAGCACACAACATAATTT 59.960 38.462 18.83 0.00 0.00 1.82
55 56 5.532406 CCCATAGCTAGCACACAACATAATT 59.468 40.000 18.83 0.00 0.00 1.40
56 57 5.065914 CCCATAGCTAGCACACAACATAAT 58.934 41.667 18.83 0.00 0.00 1.28
57 58 4.163268 TCCCATAGCTAGCACACAACATAA 59.837 41.667 18.83 0.00 0.00 1.90
58 59 3.709141 TCCCATAGCTAGCACACAACATA 59.291 43.478 18.83 0.00 0.00 2.29
59 60 2.505407 TCCCATAGCTAGCACACAACAT 59.495 45.455 18.83 0.00 0.00 2.71
60 61 1.905894 TCCCATAGCTAGCACACAACA 59.094 47.619 18.83 0.00 0.00 3.33
61 62 2.555199 CTCCCATAGCTAGCACACAAC 58.445 52.381 18.83 0.00 0.00 3.32
62 63 2.988010 CTCCCATAGCTAGCACACAA 57.012 50.000 18.83 0.00 0.00 3.33
73 74 3.884091 AGTAGAAGTACACGCTCCCATAG 59.116 47.826 0.00 0.00 0.00 2.23
74 75 3.894759 AGTAGAAGTACACGCTCCCATA 58.105 45.455 0.00 0.00 0.00 2.74
75 76 2.736347 AGTAGAAGTACACGCTCCCAT 58.264 47.619 0.00 0.00 0.00 4.00
76 77 2.211250 AGTAGAAGTACACGCTCCCA 57.789 50.000 0.00 0.00 0.00 4.37
77 78 3.277715 AGTAGTAGAAGTACACGCTCCC 58.722 50.000 0.00 0.00 0.00 4.30
78 79 6.616774 AATAGTAGTAGAAGTACACGCTCC 57.383 41.667 0.00 0.00 0.00 4.70
111 112 9.383519 GGACAAATGAGAAACAATAGTAGATCA 57.616 33.333 0.00 0.00 0.00 2.92
112 113 8.543774 CGGACAAATGAGAAACAATAGTAGATC 58.456 37.037 0.00 0.00 0.00 2.75
113 114 8.041323 ACGGACAAATGAGAAACAATAGTAGAT 58.959 33.333 0.00 0.00 0.00 1.98
114 115 7.383687 ACGGACAAATGAGAAACAATAGTAGA 58.616 34.615 0.00 0.00 0.00 2.59
115 116 7.596749 ACGGACAAATGAGAAACAATAGTAG 57.403 36.000 0.00 0.00 0.00 2.57
117 118 9.832445 ATATACGGACAAATGAGAAACAATAGT 57.168 29.630 0.00 0.00 0.00 2.12
121 122 9.607988 ACATATATACGGACAAATGAGAAACAA 57.392 29.630 0.00 0.00 0.00 2.83
122 123 9.607988 AACATATATACGGACAAATGAGAAACA 57.392 29.630 0.00 0.00 0.00 2.83
142 143 9.594478 TTCGTCACAACAATCTGTATAACATAT 57.406 29.630 0.00 0.00 0.00 1.78
143 144 8.989653 TTCGTCACAACAATCTGTATAACATA 57.010 30.769 0.00 0.00 0.00 2.29
144 145 7.899178 TTCGTCACAACAATCTGTATAACAT 57.101 32.000 0.00 0.00 0.00 2.71
145 146 7.716768 TTTCGTCACAACAATCTGTATAACA 57.283 32.000 0.00 0.00 0.00 2.41
146 147 8.996988 TTTTTCGTCACAACAATCTGTATAAC 57.003 30.769 0.00 0.00 0.00 1.89
170 171 9.059260 AGCTTTGCAAAAGATCATATTGTTTTT 57.941 25.926 13.84 0.00 0.00 1.94
171 172 8.500773 CAGCTTTGCAAAAGATCATATTGTTTT 58.499 29.630 13.84 0.00 0.00 2.43
172 173 7.658575 ACAGCTTTGCAAAAGATCATATTGTTT 59.341 29.630 13.84 0.00 0.00 2.83
173 174 7.117236 CACAGCTTTGCAAAAGATCATATTGTT 59.883 33.333 13.84 0.00 0.00 2.83
174 175 6.588756 CACAGCTTTGCAAAAGATCATATTGT 59.411 34.615 13.84 4.73 0.00 2.71
175 176 6.588756 ACACAGCTTTGCAAAAGATCATATTG 59.411 34.615 13.84 0.00 0.00 1.90
176 177 6.694447 ACACAGCTTTGCAAAAGATCATATT 58.306 32.000 13.84 0.00 0.00 1.28
177 178 6.276832 ACACAGCTTTGCAAAAGATCATAT 57.723 33.333 13.84 0.00 0.00 1.78
178 179 5.710513 ACACAGCTTTGCAAAAGATCATA 57.289 34.783 13.84 0.00 0.00 2.15
179 180 4.595762 ACACAGCTTTGCAAAAGATCAT 57.404 36.364 13.84 0.00 0.00 2.45
180 181 4.114073 CAACACAGCTTTGCAAAAGATCA 58.886 39.130 13.84 0.00 0.00 2.92
181 182 3.492011 CCAACACAGCTTTGCAAAAGATC 59.508 43.478 13.84 3.11 0.00 2.75
182 183 3.132646 TCCAACACAGCTTTGCAAAAGAT 59.867 39.130 13.84 3.55 0.00 2.40
183 184 2.495270 TCCAACACAGCTTTGCAAAAGA 59.505 40.909 13.84 0.00 0.00 2.52
184 185 2.604462 GTCCAACACAGCTTTGCAAAAG 59.396 45.455 13.84 8.67 0.00 2.27
185 186 2.233431 AGTCCAACACAGCTTTGCAAAA 59.767 40.909 13.84 0.00 0.00 2.44
186 187 1.824230 AGTCCAACACAGCTTTGCAAA 59.176 42.857 12.14 12.14 0.00 3.68
187 188 1.134753 CAGTCCAACACAGCTTTGCAA 59.865 47.619 0.00 0.00 0.00 4.08
188 189 0.740149 CAGTCCAACACAGCTTTGCA 59.260 50.000 0.00 0.00 0.00 4.08
189 190 1.024271 TCAGTCCAACACAGCTTTGC 58.976 50.000 0.00 0.00 0.00 3.68
190 191 3.316029 TCATTCAGTCCAACACAGCTTTG 59.684 43.478 0.00 0.00 0.00 2.77
191 192 3.554934 TCATTCAGTCCAACACAGCTTT 58.445 40.909 0.00 0.00 0.00 3.51
192 193 3.213206 TCATTCAGTCCAACACAGCTT 57.787 42.857 0.00 0.00 0.00 3.74
193 194 2.936919 TCATTCAGTCCAACACAGCT 57.063 45.000 0.00 0.00 0.00 4.24
194 195 4.232221 CAAATCATTCAGTCCAACACAGC 58.768 43.478 0.00 0.00 0.00 4.40
195 196 5.443185 ACAAATCATTCAGTCCAACACAG 57.557 39.130 0.00 0.00 0.00 3.66
196 197 6.061441 ACTACAAATCATTCAGTCCAACACA 58.939 36.000 0.00 0.00 0.00 3.72
197 198 6.560253 ACTACAAATCATTCAGTCCAACAC 57.440 37.500 0.00 0.00 0.00 3.32
198 199 5.408299 CGACTACAAATCATTCAGTCCAACA 59.592 40.000 0.00 0.00 33.60 3.33
199 200 5.637810 TCGACTACAAATCATTCAGTCCAAC 59.362 40.000 0.00 0.00 33.60 3.77
200 201 5.789521 TCGACTACAAATCATTCAGTCCAA 58.210 37.500 0.00 0.00 33.60 3.53
201 202 5.400066 TCGACTACAAATCATTCAGTCCA 57.600 39.130 0.00 0.00 33.60 4.02
202 203 6.910536 ATTCGACTACAAATCATTCAGTCC 57.089 37.500 0.00 0.00 33.60 3.85
203 204 9.855361 CATAATTCGACTACAAATCATTCAGTC 57.145 33.333 0.00 0.00 33.78 3.51
204 205 9.383519 ACATAATTCGACTACAAATCATTCAGT 57.616 29.630 0.00 0.00 0.00 3.41
206 207 9.986833 CAACATAATTCGACTACAAATCATTCA 57.013 29.630 0.00 0.00 0.00 2.57
207 208 9.988350 ACAACATAATTCGACTACAAATCATTC 57.012 29.630 0.00 0.00 0.00 2.67
210 211 9.605955 CAAACAACATAATTCGACTACAAATCA 57.394 29.630 0.00 0.00 0.00 2.57
211 212 9.820229 TCAAACAACATAATTCGACTACAAATC 57.180 29.630 0.00 0.00 0.00 2.17
226 227 9.423061 CGATCCTCATGTATATCAAACAACATA 57.577 33.333 0.00 0.00 31.55 2.29
227 228 7.933577 ACGATCCTCATGTATATCAAACAACAT 59.066 33.333 0.00 0.00 32.91 2.71
228 229 7.272244 ACGATCCTCATGTATATCAAACAACA 58.728 34.615 0.00 0.00 0.00 3.33
229 230 7.715265 ACGATCCTCATGTATATCAAACAAC 57.285 36.000 0.00 0.00 0.00 3.32
230 231 9.825109 TTTACGATCCTCATGTATATCAAACAA 57.175 29.630 0.00 0.00 0.00 2.83
231 232 9.825109 TTTTACGATCCTCATGTATATCAAACA 57.175 29.630 0.00 0.00 0.00 2.83
239 240 9.778741 ACACATAATTTTACGATCCTCATGTAT 57.221 29.630 0.00 0.00 0.00 2.29
240 241 9.607988 AACACATAATTTTACGATCCTCATGTA 57.392 29.630 0.00 0.00 0.00 2.29
241 242 8.506168 AACACATAATTTTACGATCCTCATGT 57.494 30.769 0.00 0.00 0.00 3.21
244 245 9.309516 GTCTAACACATAATTTTACGATCCTCA 57.690 33.333 0.00 0.00 0.00 3.86
245 246 9.309516 TGTCTAACACATAATTTTACGATCCTC 57.690 33.333 0.00 0.00 0.00 3.71
246 247 9.832445 ATGTCTAACACATAATTTTACGATCCT 57.168 29.630 0.00 0.00 44.56 3.24
247 248 9.864034 CATGTCTAACACATAATTTTACGATCC 57.136 33.333 0.00 0.00 44.60 3.36
283 284 9.418045 CGGGACAACAGACAATTTTAATATTTT 57.582 29.630 0.00 0.00 0.00 1.82
284 285 8.581578 ACGGGACAACAGACAATTTTAATATTT 58.418 29.630 0.00 0.00 0.00 1.40
285 286 8.117813 ACGGGACAACAGACAATTTTAATATT 57.882 30.769 0.00 0.00 0.00 1.28
286 287 7.696992 ACGGGACAACAGACAATTTTAATAT 57.303 32.000 0.00 0.00 0.00 1.28
287 288 7.148373 GCTACGGGACAACAGACAATTTTAATA 60.148 37.037 0.00 0.00 0.00 0.98
288 289 6.349033 GCTACGGGACAACAGACAATTTTAAT 60.349 38.462 0.00 0.00 0.00 1.40
289 290 5.049267 GCTACGGGACAACAGACAATTTTAA 60.049 40.000 0.00 0.00 0.00 1.52
290 291 4.453136 GCTACGGGACAACAGACAATTTTA 59.547 41.667 0.00 0.00 0.00 1.52
291 292 3.252458 GCTACGGGACAACAGACAATTTT 59.748 43.478 0.00 0.00 0.00 1.82
292 293 2.812011 GCTACGGGACAACAGACAATTT 59.188 45.455 0.00 0.00 0.00 1.82
293 294 2.224426 TGCTACGGGACAACAGACAATT 60.224 45.455 0.00 0.00 0.00 2.32
294 295 1.346395 TGCTACGGGACAACAGACAAT 59.654 47.619 0.00 0.00 0.00 2.71
295 296 0.753867 TGCTACGGGACAACAGACAA 59.246 50.000 0.00 0.00 0.00 3.18
296 297 0.753867 TTGCTACGGGACAACAGACA 59.246 50.000 0.00 0.00 0.00 3.41
297 298 1.529865 GTTTGCTACGGGACAACAGAC 59.470 52.381 0.00 0.00 0.00 3.51
298 299 1.870580 CGTTTGCTACGGGACAACAGA 60.871 52.381 4.34 0.00 46.42 3.41
299 300 0.511221 CGTTTGCTACGGGACAACAG 59.489 55.000 4.34 0.00 46.42 3.16
300 301 2.607457 CGTTTGCTACGGGACAACA 58.393 52.632 4.34 0.00 46.42 3.33
309 310 1.081094 ATTACCCGTGCGTTTGCTAC 58.919 50.000 0.00 0.00 43.34 3.58
310 311 1.810959 AATTACCCGTGCGTTTGCTA 58.189 45.000 0.00 0.00 43.34 3.49
311 312 1.810959 TAATTACCCGTGCGTTTGCT 58.189 45.000 0.00 0.00 43.34 3.91
312 313 2.353579 AGATAATTACCCGTGCGTTTGC 59.646 45.455 0.00 0.00 43.20 3.68
313 314 4.807304 ACTAGATAATTACCCGTGCGTTTG 59.193 41.667 0.00 0.00 0.00 2.93
314 315 5.014808 ACTAGATAATTACCCGTGCGTTT 57.985 39.130 0.00 0.00 0.00 3.60
315 316 4.660789 ACTAGATAATTACCCGTGCGTT 57.339 40.909 0.00 0.00 0.00 4.84
316 317 5.300286 ACTTACTAGATAATTACCCGTGCGT 59.700 40.000 0.00 0.00 0.00 5.24
317 318 5.766222 ACTTACTAGATAATTACCCGTGCG 58.234 41.667 0.00 0.00 0.00 5.34
318 319 8.429493 AAAACTTACTAGATAATTACCCGTGC 57.571 34.615 0.00 0.00 0.00 5.34
340 341 9.855021 GCTTCTAAGTGGATGCTATTTTTAAAA 57.145 29.630 0.00 0.00 34.76 1.52
387 388 0.179468 CGGGGATATTCGTTGGGTGT 59.821 55.000 0.00 0.00 0.00 4.16
388 389 1.164041 GCGGGGATATTCGTTGGGTG 61.164 60.000 0.00 0.00 0.00 4.61
389 390 1.147600 GCGGGGATATTCGTTGGGT 59.852 57.895 0.00 0.00 0.00 4.51
390 391 0.464735 TTGCGGGGATATTCGTTGGG 60.465 55.000 0.00 0.00 0.00 4.12
391 392 1.384525 TTTGCGGGGATATTCGTTGG 58.615 50.000 0.00 0.00 0.00 3.77
392 393 3.495670 TTTTTGCGGGGATATTCGTTG 57.504 42.857 0.00 0.00 0.00 4.10
412 413 4.361420 CGGTTTATTCGTTGGGTGTTTTT 58.639 39.130 0.00 0.00 0.00 1.94
413 414 3.243468 CCGGTTTATTCGTTGGGTGTTTT 60.243 43.478 0.00 0.00 0.00 2.43
414 415 2.293955 CCGGTTTATTCGTTGGGTGTTT 59.706 45.455 0.00 0.00 0.00 2.83
620 622 4.773117 GGGACGACGACGACAGCC 62.773 72.222 15.32 9.14 42.66 4.85
661 663 4.285863 GAGATCTTGGAAGAAGGAGGAGA 58.714 47.826 0.00 0.00 38.77 3.71
732 743 1.200519 ACGGGATCGAATTGGAAGGA 58.799 50.000 0.00 0.00 40.11 3.36
959 970 1.149148 GAAGAACAAGGACGGACAGC 58.851 55.000 0.00 0.00 0.00 4.40
1172 1184 8.000780 AGCAAATGGGTTTGATTAGAATAGAC 57.999 34.615 5.17 0.00 46.03 2.59
1173 1185 8.055181 AGAGCAAATGGGTTTGATTAGAATAGA 58.945 33.333 5.17 0.00 43.44 1.98
1230 1243 3.742882 CAGATGGTAGTATGATGGTTGCG 59.257 47.826 0.00 0.00 0.00 4.85
1281 1294 3.448093 TGCCCATAAAACTGACATGGA 57.552 42.857 0.00 0.00 41.53 3.41
1321 1334 4.044336 TGTGTGCAAAAGTCAAGATTGG 57.956 40.909 0.00 0.00 0.00 3.16
1336 1349 6.200665 TCAGATTAGCATTTGTTTTTGTGTGC 59.799 34.615 0.00 0.00 0.00 4.57
1373 1387 7.266335 CGCTAGCATTTTTATTATCGCAAGTAC 59.734 37.037 16.45 0.00 39.48 2.73
1443 1458 9.585099 GTGCAAAAATCAAGATTGATATTGGTA 57.415 29.630 22.41 8.71 46.60 3.25
1537 1563 2.989422 AGCATCACCGTAAAACTTGC 57.011 45.000 0.00 0.00 0.00 4.01
1690 1716 4.549516 GACGACGAGCTACCGGCC 62.550 72.222 0.00 0.00 43.05 6.13
2042 2068 6.301486 TCATGGAAATATCAGGGAATCAGTG 58.699 40.000 0.00 0.00 0.00 3.66
2115 2143 5.396484 CATCAACCATCATGTTCTTGACAC 58.604 41.667 0.00 0.00 42.04 3.67
2191 2219 0.537143 CAGTGCCCAGTTGCCTGTTA 60.537 55.000 0.00 0.00 36.95 2.41
2443 2471 2.927856 ATCACCAGGTCACGCCCA 60.928 61.111 0.00 0.00 38.26 5.36
2923 2952 6.330004 ACTTGCAACACATGATAATTCACA 57.670 33.333 0.00 0.00 33.85 3.58
2968 2997 9.912634 ATAATTCACAAAACACATTAGAACTGG 57.087 29.630 0.00 0.00 0.00 4.00
3010 3039 5.297278 CCAATCATGGTAAATTTGGCATTGG 59.703 40.000 0.00 6.40 42.18 3.16
3178 3789 0.601057 GCTTTGGCGCTTTCCCTTTA 59.399 50.000 7.64 0.00 0.00 1.85
3190 3801 2.259511 CTGGCTTTCCGCTTTGGC 59.740 61.111 0.00 0.00 39.13 4.52
3191 3802 2.639327 CCCTGGCTTTCCGCTTTGG 61.639 63.158 0.00 0.00 39.13 3.28
3192 3803 2.964978 CCCTGGCTTTCCGCTTTG 59.035 61.111 0.00 0.00 39.13 2.77
3193 3804 2.991540 GCCCTGGCTTTCCGCTTT 60.992 61.111 0.00 0.00 39.13 3.51
3231 3842 2.104253 CGGCATCGGGTTGTACCAC 61.104 63.158 0.00 0.00 41.02 4.16
3232 3843 2.266372 CGGCATCGGGTTGTACCA 59.734 61.111 0.00 0.00 41.02 3.25
3234 3845 3.790177 GACGGCATCGGGTTGTAC 58.210 61.111 0.00 0.00 41.39 2.90
3293 3904 1.604755 AGAGATCGTAGATGCCGTCAC 59.395 52.381 0.00 0.00 45.12 3.67
3294 3905 1.968704 AGAGATCGTAGATGCCGTCA 58.031 50.000 0.00 0.00 45.12 4.35
3333 3944 4.617520 TTGGCCTGTTCGAGCGCA 62.618 61.111 11.47 0.00 0.00 6.09
3379 3990 2.099756 GAGGTTTGCAACTGTGAAAGCT 59.900 45.455 0.00 0.00 36.35 3.74
3474 4085 4.330944 TGTATTCTAACATAGCCCACGG 57.669 45.455 0.00 0.00 0.00 4.94
3475 4086 5.357257 AGTTGTATTCTAACATAGCCCACG 58.643 41.667 0.00 0.00 0.00 4.94
3492 4103 8.921205 GGAGTCCTAATCCTATTACAAGTTGTA 58.079 37.037 11.75 11.75 33.77 2.41
3493 4104 7.624077 AGGAGTCCTAATCCTATTACAAGTTGT 59.376 37.037 10.94 14.05 45.58 3.32
3494 4105 8.024145 AGGAGTCCTAATCCTATTACAAGTTG 57.976 38.462 10.94 0.00 45.58 3.16
3504 4115 3.979347 ACCGAGTAGGAGTCCTAATCCTA 59.021 47.826 31.22 7.00 45.13 2.94
3505 4116 2.784682 ACCGAGTAGGAGTCCTAATCCT 59.215 50.000 31.22 20.38 45.13 3.24
3506 4117 3.226682 ACCGAGTAGGAGTCCTAATCC 57.773 52.381 31.22 18.51 45.13 3.01
3507 4118 4.401837 ACAAACCGAGTAGGAGTCCTAATC 59.598 45.833 29.02 29.02 44.68 1.75
3508 4119 4.351127 ACAAACCGAGTAGGAGTCCTAAT 58.649 43.478 20.80 19.83 45.00 1.73
3509 4120 3.771216 ACAAACCGAGTAGGAGTCCTAA 58.229 45.455 20.80 2.42 45.00 2.69
3510 4121 3.446442 ACAAACCGAGTAGGAGTCCTA 57.554 47.619 15.33 15.33 45.00 2.94
3511 4122 2.305858 ACAAACCGAGTAGGAGTCCT 57.694 50.000 17.78 17.78 45.00 3.85
3512 4123 4.732672 ATTACAAACCGAGTAGGAGTCC 57.267 45.455 0.00 0.00 45.00 3.85
3513 4124 5.221204 CCCTATTACAAACCGAGTAGGAGTC 60.221 48.000 0.00 0.00 45.00 3.36
3514 4125 4.648307 CCCTATTACAAACCGAGTAGGAGT 59.352 45.833 0.00 0.00 45.00 3.85
3515 4126 4.501058 GCCCTATTACAAACCGAGTAGGAG 60.501 50.000 0.00 0.00 45.00 3.69
3516 4127 3.385755 GCCCTATTACAAACCGAGTAGGA 59.614 47.826 0.00 0.00 45.00 2.94
3518 4129 4.667519 AGCCCTATTACAAACCGAGTAG 57.332 45.455 0.00 0.00 0.00 2.57
3519 4130 4.586001 CCTAGCCCTATTACAAACCGAGTA 59.414 45.833 0.00 0.00 0.00 2.59
3520 4131 3.387050 CCTAGCCCTATTACAAACCGAGT 59.613 47.826 0.00 0.00 0.00 4.18
3521 4132 3.387050 ACCTAGCCCTATTACAAACCGAG 59.613 47.826 0.00 0.00 0.00 4.63
3522 4133 3.377573 ACCTAGCCCTATTACAAACCGA 58.622 45.455 0.00 0.00 0.00 4.69
3523 4134 3.133362 TGACCTAGCCCTATTACAAACCG 59.867 47.826 0.00 0.00 0.00 4.44
3524 4135 4.444449 CCTGACCTAGCCCTATTACAAACC 60.444 50.000 0.00 0.00 0.00 3.27
3525 4136 4.163649 ACCTGACCTAGCCCTATTACAAAC 59.836 45.833 0.00 0.00 0.00 2.93
3526 4137 4.163458 CACCTGACCTAGCCCTATTACAAA 59.837 45.833 0.00 0.00 0.00 2.83
3527 4138 3.709653 CACCTGACCTAGCCCTATTACAA 59.290 47.826 0.00 0.00 0.00 2.41
3528 4139 3.305720 CACCTGACCTAGCCCTATTACA 58.694 50.000 0.00 0.00 0.00 2.41
3529 4140 2.037381 GCACCTGACCTAGCCCTATTAC 59.963 54.545 0.00 0.00 0.00 1.89
3530 4141 2.326428 GCACCTGACCTAGCCCTATTA 58.674 52.381 0.00 0.00 0.00 0.98
3531 4142 1.132500 GCACCTGACCTAGCCCTATT 58.868 55.000 0.00 0.00 0.00 1.73
3532 4143 1.115930 CGCACCTGACCTAGCCCTAT 61.116 60.000 0.00 0.00 0.00 2.57
3533 4144 1.756950 CGCACCTGACCTAGCCCTA 60.757 63.158 0.00 0.00 0.00 3.53
3534 4145 3.077556 CGCACCTGACCTAGCCCT 61.078 66.667 0.00 0.00 0.00 5.19
3535 4146 4.162690 CCGCACCTGACCTAGCCC 62.163 72.222 0.00 0.00 0.00 5.19
3536 4147 4.840005 GCCGCACCTGACCTAGCC 62.840 72.222 0.00 0.00 0.00 3.93
3537 4148 3.316573 AAGCCGCACCTGACCTAGC 62.317 63.158 0.00 0.00 0.00 3.42
3538 4149 1.448540 CAAGCCGCACCTGACCTAG 60.449 63.158 0.00 0.00 0.00 3.02
3539 4150 2.662596 CAAGCCGCACCTGACCTA 59.337 61.111 0.00 0.00 0.00 3.08
3540 4151 4.335647 CCAAGCCGCACCTGACCT 62.336 66.667 0.00 0.00 0.00 3.85
3543 4154 4.704833 GAGCCAAGCCGCACCTGA 62.705 66.667 0.00 0.00 0.00 3.86
3544 4155 2.803155 TAAGAGCCAAGCCGCACCTG 62.803 60.000 0.00 0.00 0.00 4.00
3545 4156 1.915078 ATAAGAGCCAAGCCGCACCT 61.915 55.000 0.00 0.00 0.00 4.00
3546 4157 0.179056 TATAAGAGCCAAGCCGCACC 60.179 55.000 0.00 0.00 0.00 5.01
3547 4158 1.884235 ATATAAGAGCCAAGCCGCAC 58.116 50.000 0.00 0.00 0.00 5.34
3548 4159 3.981071 ATATATAAGAGCCAAGCCGCA 57.019 42.857 0.00 0.00 0.00 5.69
3549 4160 4.120589 GGTATATATAAGAGCCAAGCCGC 58.879 47.826 0.00 0.00 0.00 6.53
3550 4161 5.361285 AGAGGTATATATAAGAGCCAAGCCG 59.639 44.000 0.00 0.00 0.00 5.52
3551 4162 6.800072 AGAGGTATATATAAGAGCCAAGCC 57.200 41.667 0.00 0.00 0.00 4.35
3552 4163 7.616313 ACAAGAGGTATATATAAGAGCCAAGC 58.384 38.462 0.00 0.00 0.00 4.01
3554 4165 9.824216 AGTACAAGAGGTATATATAAGAGCCAA 57.176 33.333 0.00 0.00 33.76 4.52
3555 4166 9.244292 CAGTACAAGAGGTATATATAAGAGCCA 57.756 37.037 0.00 0.00 33.76 4.75
3556 4167 8.688151 CCAGTACAAGAGGTATATATAAGAGCC 58.312 40.741 0.00 0.00 33.76 4.70
3557 4168 8.192110 GCCAGTACAAGAGGTATATATAAGAGC 58.808 40.741 0.00 0.00 33.76 4.09
3558 4169 9.244292 TGCCAGTACAAGAGGTATATATAAGAG 57.756 37.037 0.00 0.00 33.76 2.85
3559 4170 9.021807 GTGCCAGTACAAGAGGTATATATAAGA 57.978 37.037 0.00 0.00 33.76 2.10
3560 4171 8.803235 TGTGCCAGTACAAGAGGTATATATAAG 58.197 37.037 0.00 0.00 33.76 1.73
3561 4172 8.715190 TGTGCCAGTACAAGAGGTATATATAA 57.285 34.615 0.00 0.00 33.76 0.98
3562 4173 8.715190 TTGTGCCAGTACAAGAGGTATATATA 57.285 34.615 0.00 0.00 35.75 0.86
3563 4174 7.612065 TTGTGCCAGTACAAGAGGTATATAT 57.388 36.000 0.00 0.00 35.75 0.86
3564 4175 7.612065 ATTGTGCCAGTACAAGAGGTATATA 57.388 36.000 7.37 0.00 43.14 0.86
3565 4176 5.950544 TTGTGCCAGTACAAGAGGTATAT 57.049 39.130 0.00 0.00 35.75 0.86
3566 4177 5.950544 ATTGTGCCAGTACAAGAGGTATA 57.049 39.130 7.37 0.00 43.14 1.47
3567 4178 4.844349 ATTGTGCCAGTACAAGAGGTAT 57.156 40.909 7.37 0.00 43.14 2.73
3568 4179 5.950544 ATATTGTGCCAGTACAAGAGGTA 57.049 39.130 7.37 0.00 43.14 3.08
3569 4180 4.844349 ATATTGTGCCAGTACAAGAGGT 57.156 40.909 7.37 0.00 43.14 3.85
3570 4181 4.201950 GCAATATTGTGCCAGTACAAGAGG 60.202 45.833 16.61 1.58 43.14 3.69
3571 4182 4.395854 TGCAATATTGTGCCAGTACAAGAG 59.604 41.667 16.61 0.00 43.14 2.85
3572 4183 4.331108 TGCAATATTGTGCCAGTACAAGA 58.669 39.130 16.61 3.15 43.14 3.02
3573 4184 4.700268 TGCAATATTGTGCCAGTACAAG 57.300 40.909 16.61 0.00 43.14 3.16
3574 4185 4.704057 TGATGCAATATTGTGCCAGTACAA 59.296 37.500 16.61 3.76 44.26 2.41
3575 4186 4.268359 TGATGCAATATTGTGCCAGTACA 58.732 39.130 16.61 4.22 44.26 2.90
3576 4187 4.898829 TGATGCAATATTGTGCCAGTAC 57.101 40.909 16.61 0.00 44.26 2.73
3577 4188 4.704057 TGTTGATGCAATATTGTGCCAGTA 59.296 37.500 16.61 3.41 44.26 2.74
3578 4189 3.510753 TGTTGATGCAATATTGTGCCAGT 59.489 39.130 16.61 0.00 44.26 4.00
3579 4190 4.112716 TGTTGATGCAATATTGTGCCAG 57.887 40.909 16.61 0.00 44.26 4.85
3580 4191 4.532314 TTGTTGATGCAATATTGTGCCA 57.468 36.364 16.61 6.97 44.26 4.92
3581 4192 7.718272 ATAATTGTTGATGCAATATTGTGCC 57.282 32.000 16.61 6.71 44.26 5.01
3582 4193 8.819015 TGAATAATTGTTGATGCAATATTGTGC 58.181 29.630 16.61 4.89 45.15 4.57
3606 4217 9.764363 GTCTGATACCATGTAGAATTGTATTGA 57.236 33.333 0.00 0.00 0.00 2.57
3607 4218 9.770097 AGTCTGATACCATGTAGAATTGTATTG 57.230 33.333 0.00 0.00 0.00 1.90
3610 4221 9.817809 GAAAGTCTGATACCATGTAGAATTGTA 57.182 33.333 0.00 0.00 29.25 2.41
3611 4222 7.492669 CGAAAGTCTGATACCATGTAGAATTGT 59.507 37.037 0.00 0.00 29.25 2.71
3612 4223 7.706607 TCGAAAGTCTGATACCATGTAGAATTG 59.293 37.037 0.00 0.00 29.25 2.32
3613 4224 7.782049 TCGAAAGTCTGATACCATGTAGAATT 58.218 34.615 0.00 0.00 0.00 2.17
3614 4225 7.348080 TCGAAAGTCTGATACCATGTAGAAT 57.652 36.000 0.00 0.00 0.00 2.40
3615 4226 6.769134 TCGAAAGTCTGATACCATGTAGAA 57.231 37.500 0.00 0.00 0.00 2.10
3616 4227 6.016192 GGATCGAAAGTCTGATACCATGTAGA 60.016 42.308 0.00 0.00 0.00 2.59
3617 4228 6.015856 AGGATCGAAAGTCTGATACCATGTAG 60.016 42.308 0.00 0.00 0.00 2.74
3618 4229 5.833667 AGGATCGAAAGTCTGATACCATGTA 59.166 40.000 0.00 0.00 0.00 2.29
3619 4230 4.651503 AGGATCGAAAGTCTGATACCATGT 59.348 41.667 0.00 0.00 0.00 3.21
3620 4231 5.207110 AGGATCGAAAGTCTGATACCATG 57.793 43.478 0.00 0.00 0.00 3.66
3621 4232 5.478679 CCTAGGATCGAAAGTCTGATACCAT 59.521 44.000 1.05 0.00 0.00 3.55
3622 4233 4.827835 CCTAGGATCGAAAGTCTGATACCA 59.172 45.833 1.05 0.00 0.00 3.25
3623 4234 4.218852 CCCTAGGATCGAAAGTCTGATACC 59.781 50.000 11.48 0.00 0.00 2.73
3624 4235 4.828387 ACCCTAGGATCGAAAGTCTGATAC 59.172 45.833 11.48 0.00 0.00 2.24
3625 4236 5.063017 ACCCTAGGATCGAAAGTCTGATA 57.937 43.478 11.48 0.00 0.00 2.15
3626 4237 3.917300 ACCCTAGGATCGAAAGTCTGAT 58.083 45.455 11.48 0.00 0.00 2.90
3627 4238 3.383698 ACCCTAGGATCGAAAGTCTGA 57.616 47.619 11.48 0.00 0.00 3.27
3628 4239 4.021894 CCATACCCTAGGATCGAAAGTCTG 60.022 50.000 11.48 0.58 0.00 3.51
3629 4240 4.153411 CCATACCCTAGGATCGAAAGTCT 58.847 47.826 11.48 0.00 0.00 3.24
3630 4241 3.306156 GCCATACCCTAGGATCGAAAGTC 60.306 52.174 11.48 0.00 0.00 3.01
3631 4242 2.633481 GCCATACCCTAGGATCGAAAGT 59.367 50.000 11.48 0.00 0.00 2.66
3632 4243 2.900546 AGCCATACCCTAGGATCGAAAG 59.099 50.000 11.48 0.00 0.00 2.62
3633 4244 2.972348 AGCCATACCCTAGGATCGAAA 58.028 47.619 11.48 0.00 0.00 3.46
3634 4245 2.696526 AGCCATACCCTAGGATCGAA 57.303 50.000 11.48 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.