Multiple sequence alignment - TraesCS7D01G292800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G292800 chr7D 100.000 3766 0 0 1 3766 361028751 361032516 0.000000e+00 6955
1 TraesCS7D01G292800 chr7D 97.990 199 4 0 3568 3766 51754804 51755002 2.780000e-91 346
2 TraesCS7D01G292800 chr7D 93.902 164 4 6 3411 3570 56285451 56285612 3.760000e-60 243
3 TraesCS7D01G292800 chr7D 90.860 186 6 4 3393 3568 46709896 46709712 4.860000e-59 239
4 TraesCS7D01G292800 chr7D 79.016 386 43 20 104 467 462680240 462679871 2.930000e-56 230
5 TraesCS7D01G292800 chr7A 95.101 1776 66 12 506 2264 396442420 396444191 0.000000e+00 2778
6 TraesCS7D01G292800 chr7A 92.662 954 53 11 2261 3201 396444330 396445279 0.000000e+00 1358
7 TraesCS7D01G292800 chr7A 95.349 86 4 0 3191 3276 396445305 396445390 1.820000e-28 137
8 TraesCS7D01G292800 chr7A 90.099 101 4 1 3191 3285 396445400 396445500 3.950000e-25 126
9 TraesCS7D01G292800 chr7B 95.155 1486 39 10 1667 3121 325987886 325986403 0.000000e+00 2314
10 TraesCS7D01G292800 chr7B 95.745 1175 39 5 517 1682 325989077 325987905 0.000000e+00 1882
11 TraesCS7D01G292800 chr7B 84.646 254 19 9 3148 3399 325986408 325986173 6.290000e-58 235
12 TraesCS7D01G292800 chr6B 82.524 515 73 14 2270 2775 42511064 42510558 1.610000e-118 436
13 TraesCS7D01G292800 chr6D 81.453 523 73 16 2263 2772 26255293 26254782 1.260000e-109 407
14 TraesCS7D01G292800 chr6D 80.952 483 60 21 1 469 437660334 437660798 1.660000e-93 353
15 TraesCS7D01G292800 chr6D 96.482 199 7 0 3568 3766 390782117 390781919 2.800000e-86 329
16 TraesCS7D01G292800 chr6D 93.082 159 8 3 3415 3570 14163613 14163771 2.930000e-56 230
17 TraesCS7D01G292800 chr6A 81.226 522 77 13 2263 2772 24074403 24073891 5.860000e-108 401
18 TraesCS7D01G292800 chr6A 84.066 364 41 12 101 457 22806121 22805768 6.030000e-88 335
19 TraesCS7D01G292800 chr6A 91.489 141 12 0 1775 1915 24074864 24074724 1.070000e-45 195
20 TraesCS7D01G292800 chr2D 80.040 496 71 20 1 472 560951299 560950808 3.600000e-90 342
21 TraesCS7D01G292800 chr2D 97.000 200 5 1 3568 3766 10221152 10221351 6.030000e-88 335
22 TraesCS7D01G292800 chr2D 96.985 199 6 0 3568 3766 574658157 574657959 6.030000e-88 335
23 TraesCS7D01G292800 chr2D 93.671 158 8 2 3415 3570 539165292 539165135 6.290000e-58 235
24 TraesCS7D01G292800 chr2D 93.711 159 6 4 3416 3570 629576591 629576749 6.290000e-58 235
25 TraesCS7D01G292800 chr5D 97.487 199 5 0 3568 3766 483581214 483581412 1.300000e-89 340
26 TraesCS7D01G292800 chr5D 93.125 160 6 5 3415 3570 254593540 254593698 2.930000e-56 230
27 TraesCS7D01G292800 chr1D 97.487 199 4 1 3568 3766 362011401 362011598 4.660000e-89 339
28 TraesCS7D01G292800 chr1D 97.000 200 5 1 3568 3766 416932484 416932683 6.030000e-88 335
29 TraesCS7D01G292800 chr1D 96.500 200 6 1 3568 3766 458720391 458720590 2.800000e-86 329
30 TraesCS7D01G292800 chr1D 96.482 199 7 0 3568 3766 475869806 475869608 2.800000e-86 329
31 TraesCS7D01G292800 chr1D 81.285 358 50 12 1 352 269988396 269988742 1.330000e-69 274
32 TraesCS7D01G292800 chr1D 93.827 162 4 5 3413 3570 415524172 415524331 4.860000e-59 239
33 TraesCS7D01G292800 chr1D 93.082 159 7 4 3415 3570 332208336 332208493 2.930000e-56 230
34 TraesCS7D01G292800 chr4B 79.449 472 67 18 1 457 85640400 85640856 1.310000e-79 307
35 TraesCS7D01G292800 chr2B 79.074 497 59 16 1 468 197988150 197988630 2.200000e-77 300
36 TraesCS7D01G292800 chr2A 78.770 504 59 23 1 472 161644846 161644359 1.020000e-75 294
37 TraesCS7D01G292800 chr3A 78.471 497 67 14 1 468 64069543 64069058 4.760000e-74 289
38 TraesCS7D01G292800 chr3D 94.937 158 5 3 3415 3570 570782364 570782520 1.040000e-60 244
39 TraesCS7D01G292800 chr3B 89.189 148 14 2 1770 1915 753323672 753323819 2.310000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G292800 chr7D 361028751 361032516 3765 False 6955.00 6955 100.000000 1 3766 1 chr7D.!!$F3 3765
1 TraesCS7D01G292800 chr7A 396442420 396445500 3080 False 1099.75 2778 93.302750 506 3285 4 chr7A.!!$F1 2779
2 TraesCS7D01G292800 chr7B 325986173 325989077 2904 True 1477.00 2314 91.848667 517 3399 3 chr7B.!!$R1 2882
3 TraesCS7D01G292800 chr6B 42510558 42511064 506 True 436.00 436 82.524000 2270 2775 1 chr6B.!!$R1 505
4 TraesCS7D01G292800 chr6D 26254782 26255293 511 True 407.00 407 81.453000 2263 2772 1 chr6D.!!$R1 509
5 TraesCS7D01G292800 chr6A 24073891 24074864 973 True 298.00 401 86.357500 1775 2772 2 chr6A.!!$R2 997

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 502 0.036952 CCCATATAGGAGCAGCCGTG 60.037 60.0 0.00 0.0 43.43 4.94 F
502 503 0.036952 CCATATAGGAGCAGCCGTGG 60.037 60.0 0.00 0.0 43.43 4.94 F
841 850 0.661552 TCCTCTCGTATGCGTAGTGC 59.338 55.0 2.37 0.0 46.70 4.40 F
2651 3074 0.976641 AGCTCATGAAGGTCACCGAA 59.023 50.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1462 1476 0.824759 GACCTGGCGAGGAATACTGT 59.175 55.000 23.01 0.0 42.93 3.55 R
1588 1604 1.407299 GCATGGCATCAGAGGTACACA 60.407 52.381 0.00 0.0 0.00 3.72 R
2684 3107 0.526662 GGTTCATCCTCTCGACACGT 59.473 55.000 0.00 0.0 0.00 4.49 R
3633 4202 0.104855 TGCCCTAGCGTGCTTATGAG 59.895 55.000 0.00 0.0 44.31 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.606040 AAATGTTCATCAAATCCGAAATTTGT 57.394 26.923 17.33 7.38 39.36 2.83
27 28 8.606040 AATGTTCATCAAATCCGAAATTTGTT 57.394 26.923 17.33 10.25 39.36 2.83
28 29 7.636259 TGTTCATCAAATCCGAAATTTGTTC 57.364 32.000 17.33 9.12 39.36 3.18
29 30 7.205992 TGTTCATCAAATCCGAAATTTGTTCA 58.794 30.769 17.33 10.68 39.36 3.18
30 31 7.871973 TGTTCATCAAATCCGAAATTTGTTCAT 59.128 29.630 17.33 6.60 39.36 2.57
31 32 8.375465 GTTCATCAAATCCGAAATTTGTTCATC 58.625 33.333 17.33 7.98 39.36 2.92
32 33 7.600960 TCATCAAATCCGAAATTTGTTCATCA 58.399 30.769 17.33 4.01 39.36 3.07
33 34 8.087136 TCATCAAATCCGAAATTTGTTCATCAA 58.913 29.630 17.33 3.50 39.36 2.57
34 35 8.875803 CATCAAATCCGAAATTTGTTCATCAAT 58.124 29.630 17.33 5.10 39.36 2.57
35 36 8.830201 TCAAATCCGAAATTTGTTCATCAATT 57.170 26.923 17.33 0.00 39.36 2.32
36 37 9.270640 TCAAATCCGAAATTTGTTCATCAATTT 57.729 25.926 17.33 0.00 39.36 1.82
121 122 7.742019 TTGAAATTCAAAATTTGTTCGTCGA 57.258 28.000 5.87 0.00 32.71 4.20
122 123 7.922505 TGAAATTCAAAATTTGTTCGTCGAT 57.077 28.000 5.56 0.00 0.00 3.59
123 124 8.346476 TGAAATTCAAAATTTGTTCGTCGATT 57.654 26.923 5.56 0.00 0.00 3.34
124 125 8.812329 TGAAATTCAAAATTTGTTCGTCGATTT 58.188 25.926 5.56 0.00 0.00 2.17
125 126 9.289999 GAAATTCAAAATTTGTTCGTCGATTTC 57.710 29.630 5.56 7.73 0.00 2.17
126 127 7.922505 ATTCAAAATTTGTTCGTCGATTTCA 57.077 28.000 5.56 0.00 0.00 2.69
127 128 7.742019 TTCAAAATTTGTTCGTCGATTTCAA 57.258 28.000 5.56 0.00 0.00 2.69
128 129 7.742019 TCAAAATTTGTTCGTCGATTTCAAA 57.258 28.000 16.81 16.81 33.61 2.69
129 130 8.174484 TCAAAATTTGTTCGTCGATTTCAAAA 57.826 26.923 17.75 7.42 32.99 2.44
130 131 8.812329 TCAAAATTTGTTCGTCGATTTCAAAAT 58.188 25.926 17.75 11.15 32.99 1.82
131 132 9.419737 CAAAATTTGTTCGTCGATTTCAAAATT 57.580 25.926 17.75 14.67 32.99 1.82
132 133 9.980780 AAAATTTGTTCGTCGATTTCAAAATTT 57.019 22.222 17.75 17.81 32.99 1.82
133 134 8.970529 AATTTGTTCGTCGATTTCAAAATTTG 57.029 26.923 17.75 0.00 32.99 2.32
134 135 7.513190 TTTGTTCGTCGATTTCAAAATTTGT 57.487 28.000 5.56 0.00 0.00 2.83
135 136 7.513190 TTGTTCGTCGATTTCAAAATTTGTT 57.487 28.000 5.56 0.00 0.00 2.83
136 137 7.144007 TGTTCGTCGATTTCAAAATTTGTTC 57.856 32.000 5.56 1.68 0.00 3.18
137 138 6.747739 TGTTCGTCGATTTCAAAATTTGTTCA 59.252 30.769 5.56 0.00 0.00 3.18
138 139 7.273598 TGTTCGTCGATTTCAAAATTTGTTCAA 59.726 29.630 5.56 0.00 0.00 2.69
139 140 7.922505 TCGTCGATTTCAAAATTTGTTCAAT 57.077 28.000 5.56 3.47 0.00 2.57
140 141 9.452065 TTCGTCGATTTCAAAATTTGTTCAATA 57.548 25.926 5.56 0.00 0.00 1.90
141 142 9.619316 TCGTCGATTTCAAAATTTGTTCAATAT 57.381 25.926 5.56 0.00 0.00 1.28
197 198 9.952030 AAAAATATTCCGGAATACCAATTTTGT 57.048 25.926 33.74 22.57 36.24 2.83
198 199 9.952030 AAAATATTCCGGAATACCAATTTTGTT 57.048 25.926 33.74 19.89 36.24 2.83
199 200 9.594478 AAATATTCCGGAATACCAATTTTGTTC 57.406 29.630 33.74 0.00 36.24 3.18
200 201 6.597832 ATTCCGGAATACCAATTTTGTTCA 57.402 33.333 28.25 0.00 35.59 3.18
201 202 6.597832 TTCCGGAATACCAATTTTGTTCAT 57.402 33.333 14.35 0.00 35.59 2.57
202 203 6.202516 TCCGGAATACCAATTTTGTTCATC 57.797 37.500 0.00 0.00 35.59 2.92
203 204 5.712446 TCCGGAATACCAATTTTGTTCATCA 59.288 36.000 0.00 0.00 35.59 3.07
204 205 6.209589 TCCGGAATACCAATTTTGTTCATCAA 59.790 34.615 0.00 0.00 35.59 2.57
205 206 6.531240 CCGGAATACCAATTTTGTTCATCAAG 59.469 38.462 0.00 0.00 35.13 3.02
206 207 7.090173 CGGAATACCAATTTTGTTCATCAAGT 58.910 34.615 0.00 0.00 35.13 3.16
207 208 7.598493 CGGAATACCAATTTTGTTCATCAAGTT 59.402 33.333 0.00 0.00 35.13 2.66
208 209 9.271828 GGAATACCAATTTTGTTCATCAAGTTT 57.728 29.630 0.00 0.00 35.34 2.66
222 223 9.993881 GTTCATCAAGTTTAAAAATGTTCATCG 57.006 29.630 0.00 0.00 0.00 3.84
223 224 9.743057 TTCATCAAGTTTAAAAATGTTCATCGT 57.257 25.926 0.00 0.00 0.00 3.73
239 240 9.689976 ATGTTCATCGTATTCAAATTTTGTTCA 57.310 25.926 8.89 0.00 0.00 3.18
240 241 9.689976 TGTTCATCGTATTCAAATTTTGTTCAT 57.310 25.926 8.89 3.54 0.00 2.57
370 371 8.816640 AATTCACTTTTGTTGACATATGGAAC 57.183 30.769 7.80 9.87 0.00 3.62
371 372 7.581213 TTCACTTTTGTTGACATATGGAACT 57.419 32.000 16.49 0.00 0.00 3.01
372 373 7.581213 TCACTTTTGTTGACATATGGAACTT 57.419 32.000 16.49 0.00 0.00 2.66
373 374 8.006298 TCACTTTTGTTGACATATGGAACTTT 57.994 30.769 16.49 0.00 0.00 2.66
374 375 8.474025 TCACTTTTGTTGACATATGGAACTTTT 58.526 29.630 16.49 0.00 0.00 2.27
375 376 8.755018 CACTTTTGTTGACATATGGAACTTTTC 58.245 33.333 16.49 2.02 0.00 2.29
376 377 8.695456 ACTTTTGTTGACATATGGAACTTTTCT 58.305 29.630 16.49 0.00 0.00 2.52
452 453 4.268720 AAAAAGCTGGGGCGTTCA 57.731 50.000 0.00 0.00 44.37 3.18
453 454 2.041153 AAAAAGCTGGGGCGTTCAG 58.959 52.632 0.00 0.00 44.37 3.02
463 464 2.124860 GCGTTCAGCCCCGGTTAT 60.125 61.111 0.00 0.00 40.81 1.89
464 465 2.469516 GCGTTCAGCCCCGGTTATG 61.470 63.158 0.00 0.00 40.81 1.90
465 466 1.817941 CGTTCAGCCCCGGTTATGG 60.818 63.158 0.00 0.00 0.00 2.74
476 477 3.573491 GTTATGGGCCAGCGCGTC 61.573 66.667 13.78 0.00 35.02 5.19
477 478 4.089239 TTATGGGCCAGCGCGTCA 62.089 61.111 13.78 0.00 35.02 4.35
478 479 4.830765 TATGGGCCAGCGCGTCAC 62.831 66.667 13.78 0.00 35.02 3.67
490 491 3.842602 CGTCACGCGCCCATATAG 58.157 61.111 5.73 0.00 0.00 1.31
491 492 1.733041 CGTCACGCGCCCATATAGG 60.733 63.158 5.73 0.00 37.03 2.57
492 493 1.663739 GTCACGCGCCCATATAGGA 59.336 57.895 5.73 0.00 41.22 2.94
493 494 0.388649 GTCACGCGCCCATATAGGAG 60.389 60.000 5.73 0.00 41.22 3.69
497 498 4.606071 CGCCCATATAGGAGCAGC 57.394 61.111 0.00 0.00 41.22 5.25
498 499 1.078848 CGCCCATATAGGAGCAGCC 60.079 63.158 0.00 0.00 41.22 4.85
499 500 1.078848 GCCCATATAGGAGCAGCCG 60.079 63.158 0.00 0.00 43.43 5.52
500 501 1.831652 GCCCATATAGGAGCAGCCGT 61.832 60.000 0.00 0.00 43.43 5.68
501 502 0.036952 CCCATATAGGAGCAGCCGTG 60.037 60.000 0.00 0.00 43.43 4.94
502 503 0.036952 CCATATAGGAGCAGCCGTGG 60.037 60.000 0.00 0.00 43.43 4.94
503 504 0.671781 CATATAGGAGCAGCCGTGGC 60.672 60.000 1.67 1.67 43.43 5.01
504 505 1.831652 ATATAGGAGCAGCCGTGGCC 61.832 60.000 7.39 0.00 43.43 5.36
531 532 1.388065 CGTAGGCTCTCTCACTGGGG 61.388 65.000 0.00 0.00 0.00 4.96
668 669 1.736586 CATCCTCTTCGTCCTCCCG 59.263 63.158 0.00 0.00 0.00 5.14
818 827 1.396653 GCGGTAGCAGTAGGTTCCTA 58.603 55.000 0.00 0.00 44.35 2.94
827 836 5.033522 AGCAGTAGGTTCCTAATTTCCTCT 58.966 41.667 0.00 0.00 0.00 3.69
830 839 5.127356 CAGTAGGTTCCTAATTTCCTCTCGT 59.873 44.000 0.00 0.00 0.00 4.18
841 850 0.661552 TCCTCTCGTATGCGTAGTGC 59.338 55.000 2.37 0.00 46.70 4.40
978 987 1.289109 CGTTGGTGTGGTGGATCGTC 61.289 60.000 0.00 0.00 0.00 4.20
1143 1155 4.041723 GCTCTTACATTGTTGCGTGTTTT 58.958 39.130 0.00 0.00 0.00 2.43
1261 1275 4.479056 ACCCCTTCTAGAGTGATAGACAGA 59.521 45.833 0.00 0.00 31.52 3.41
1262 1276 5.070001 CCCCTTCTAGAGTGATAGACAGAG 58.930 50.000 0.00 0.00 31.52 3.35
1318 1332 3.173151 TCACATTGGCTCTCTGTCCTTA 58.827 45.455 0.00 0.00 0.00 2.69
1427 1441 2.600792 GCTGAGTGTTCTGTTGAAAGCG 60.601 50.000 0.00 0.00 33.52 4.68
1462 1476 3.387962 AGGCACCTCAATTATCTCCAGA 58.612 45.455 0.00 0.00 0.00 3.86
1527 1542 5.968528 ACCTGAACTTTTGTACACAAACA 57.031 34.783 7.02 2.16 44.56 2.83
1530 1545 5.799936 CCTGAACTTTTGTACACAAACACAG 59.200 40.000 7.02 12.30 44.56 3.66
1661 1677 4.829064 TGCACACACTTGATCTTTAACC 57.171 40.909 0.00 0.00 0.00 2.85
2197 2420 2.702478 AGACTCATATGCTAGCTTGCCA 59.298 45.455 17.57 5.87 0.00 4.92
2651 3074 0.976641 AGCTCATGAAGGTCACCGAA 59.023 50.000 0.00 0.00 0.00 4.30
2817 3240 5.817816 AGTGAATGTTATCATCGGGAACTTC 59.182 40.000 0.00 0.00 32.56 3.01
2998 3421 6.385649 TCAAACTATGACTGTTGTTTTCCC 57.614 37.500 0.00 0.00 31.50 3.97
3056 3479 0.249868 GCAAGTTGCCCTTTTGACCC 60.250 55.000 17.36 0.00 37.42 4.46
3057 3480 1.413118 CAAGTTGCCCTTTTGACCCT 58.587 50.000 0.00 0.00 0.00 4.34
3058 3481 1.069049 CAAGTTGCCCTTTTGACCCTG 59.931 52.381 0.00 0.00 0.00 4.45
3059 3482 0.469892 AGTTGCCCTTTTGACCCTGG 60.470 55.000 0.00 0.00 0.00 4.45
3103 3531 8.504005 CAAAACTCTCGTGGACAGTAAAATAAT 58.496 33.333 0.00 0.00 0.00 1.28
3146 3574 9.835389 AATCCAAAATTTCTGATTTTCTTGACA 57.165 25.926 8.55 0.00 0.00 3.58
3285 3852 4.729227 TCATCATGACAATTTGCATGCT 57.271 36.364 20.33 12.90 41.18 3.79
3286 3853 5.079689 TCATCATGACAATTTGCATGCTT 57.920 34.783 20.33 1.44 41.18 3.91
3289 3856 6.532302 TCATCATGACAATTTGCATGCTTAAC 59.468 34.615 20.33 4.74 41.18 2.01
3290 3857 6.028146 TCATGACAATTTGCATGCTTAACT 57.972 33.333 20.33 0.00 41.18 2.24
3304 3873 3.805422 TGCTTAACTACCAGTGTTTGTCG 59.195 43.478 0.00 0.00 0.00 4.35
3372 3941 8.998277 TCTTACTTAGAGGCATTAGATAGTGT 57.002 34.615 0.00 0.00 0.00 3.55
3414 3983 4.932268 TTTTTAAGGACGCCGATAAGTG 57.068 40.909 0.00 0.00 0.00 3.16
3415 3984 3.598019 TTTAAGGACGCCGATAAGTGT 57.402 42.857 0.00 0.00 0.00 3.55
3416 3985 2.572191 TAAGGACGCCGATAAGTGTG 57.428 50.000 0.00 0.00 0.00 3.82
3417 3986 0.606604 AAGGACGCCGATAAGTGTGT 59.393 50.000 0.00 0.00 0.00 3.72
3418 3987 0.108804 AGGACGCCGATAAGTGTGTG 60.109 55.000 0.00 0.00 0.00 3.82
3419 3988 0.108992 GGACGCCGATAAGTGTGTGA 60.109 55.000 0.00 0.00 0.00 3.58
3420 3989 1.269166 GACGCCGATAAGTGTGTGAG 58.731 55.000 0.00 0.00 0.00 3.51
3421 3990 0.736325 ACGCCGATAAGTGTGTGAGC 60.736 55.000 0.00 0.00 0.00 4.26
3422 3991 1.742900 CGCCGATAAGTGTGTGAGCG 61.743 60.000 0.00 0.00 36.06 5.03
3423 3992 0.736325 GCCGATAAGTGTGTGAGCGT 60.736 55.000 0.00 0.00 0.00 5.07
3424 3993 1.710013 CCGATAAGTGTGTGAGCGTT 58.290 50.000 0.00 0.00 0.00 4.84
3425 3994 2.871133 CCGATAAGTGTGTGAGCGTTA 58.129 47.619 0.00 0.00 0.00 3.18
3426 3995 2.852413 CCGATAAGTGTGTGAGCGTTAG 59.148 50.000 0.00 0.00 0.00 2.34
3427 3996 2.852413 CGATAAGTGTGTGAGCGTTAGG 59.148 50.000 0.00 0.00 0.00 2.69
3428 3997 2.736144 TAAGTGTGTGAGCGTTAGGG 57.264 50.000 0.00 0.00 0.00 3.53
3429 3998 0.034896 AAGTGTGTGAGCGTTAGGGG 59.965 55.000 0.00 0.00 0.00 4.79
3430 3999 1.375523 GTGTGTGAGCGTTAGGGGG 60.376 63.158 0.00 0.00 0.00 5.40
3431 4000 1.839747 TGTGTGAGCGTTAGGGGGT 60.840 57.895 0.00 0.00 0.00 4.95
3432 4001 1.079336 GTGTGAGCGTTAGGGGGTC 60.079 63.158 0.00 0.00 0.00 4.46
3433 4002 1.229082 TGTGAGCGTTAGGGGGTCT 60.229 57.895 0.00 0.00 33.26 3.85
3434 4003 1.218316 GTGAGCGTTAGGGGGTCTG 59.782 63.158 0.00 0.00 33.26 3.51
3435 4004 2.187163 GAGCGTTAGGGGGTCTGC 59.813 66.667 0.00 0.00 0.00 4.26
3436 4005 3.387225 GAGCGTTAGGGGGTCTGCC 62.387 68.421 0.00 0.00 0.00 4.85
3447 4016 2.732289 GGTCTGCCCACACATTTGT 58.268 52.632 0.00 0.00 35.84 2.83
3462 4031 6.567687 CACATTTGTGTGGTGTATAAAGGA 57.432 37.500 2.48 0.00 40.96 3.36
3463 4032 6.976088 CACATTTGTGTGGTGTATAAAGGAA 58.024 36.000 2.48 0.00 40.96 3.36
3464 4033 6.861055 CACATTTGTGTGGTGTATAAAGGAAC 59.139 38.462 2.48 0.00 40.96 3.62
3465 4034 6.547880 ACATTTGTGTGGTGTATAAAGGAACA 59.452 34.615 0.00 0.00 0.00 3.18
3466 4035 6.627395 TTTGTGTGGTGTATAAAGGAACAG 57.373 37.500 0.00 0.00 0.00 3.16
3467 4036 4.069304 TGTGTGGTGTATAAAGGAACAGC 58.931 43.478 0.00 0.00 42.86 4.40
3468 4037 3.439129 GTGTGGTGTATAAAGGAACAGCC 59.561 47.826 2.61 0.00 42.09 4.85
3469 4038 3.014623 GTGGTGTATAAAGGAACAGCCC 58.985 50.000 2.61 0.00 42.09 5.19
3470 4039 2.645297 TGGTGTATAAAGGAACAGCCCA 59.355 45.455 2.61 0.00 42.09 5.36
3471 4040 3.268334 TGGTGTATAAAGGAACAGCCCAT 59.732 43.478 2.61 0.00 42.09 4.00
3472 4041 4.475381 TGGTGTATAAAGGAACAGCCCATA 59.525 41.667 2.61 0.00 42.09 2.74
3473 4042 4.820173 GGTGTATAAAGGAACAGCCCATAC 59.180 45.833 0.00 0.00 37.98 2.39
3474 4043 5.433526 GTGTATAAAGGAACAGCCCATACA 58.566 41.667 0.00 0.00 35.56 2.29
3475 4044 5.296035 GTGTATAAAGGAACAGCCCATACAC 59.704 44.000 0.00 0.00 43.05 2.90
3476 4045 2.215942 AAAGGAACAGCCCATACACC 57.784 50.000 0.00 0.00 37.37 4.16
3477 4046 1.372501 AAGGAACAGCCCATACACCT 58.627 50.000 0.00 0.00 37.37 4.00
3478 4047 2.263895 AGGAACAGCCCATACACCTA 57.736 50.000 0.00 0.00 37.37 3.08
3479 4048 1.838077 AGGAACAGCCCATACACCTAC 59.162 52.381 0.00 0.00 37.37 3.18
3480 4049 1.472728 GGAACAGCCCATACACCTACG 60.473 57.143 0.00 0.00 0.00 3.51
3481 4050 1.206371 GAACAGCCCATACACCTACGT 59.794 52.381 0.00 0.00 0.00 3.57
3482 4051 0.535335 ACAGCCCATACACCTACGTG 59.465 55.000 0.00 0.00 46.11 4.49
3490 4059 4.466133 CACCTACGTGTGGGCAAA 57.534 55.556 12.88 0.00 35.10 3.68
3491 4060 2.709170 CACCTACGTGTGGGCAAAA 58.291 52.632 12.88 0.00 35.10 2.44
3492 4061 0.309612 CACCTACGTGTGGGCAAAAC 59.690 55.000 12.88 0.00 35.10 2.43
3493 4062 0.107116 ACCTACGTGTGGGCAAAACA 60.107 50.000 12.88 0.00 34.14 2.83
3494 4063 1.025812 CCTACGTGTGGGCAAAACAA 58.974 50.000 0.00 0.00 0.00 2.83
3495 4064 1.001815 CCTACGTGTGGGCAAAACAAG 60.002 52.381 0.00 0.00 33.85 3.16
3496 4065 1.673920 CTACGTGTGGGCAAAACAAGT 59.326 47.619 0.00 9.75 41.91 3.16
3497 4066 1.752683 ACGTGTGGGCAAAACAAGTA 58.247 45.000 4.50 0.00 38.27 2.24
3498 4067 2.093106 ACGTGTGGGCAAAACAAGTAA 58.907 42.857 4.50 0.00 38.27 2.24
3499 4068 2.691011 ACGTGTGGGCAAAACAAGTAAT 59.309 40.909 4.50 0.00 38.27 1.89
3500 4069 3.049206 CGTGTGGGCAAAACAAGTAATG 58.951 45.455 0.00 0.00 0.00 1.90
3501 4070 3.490078 CGTGTGGGCAAAACAAGTAATGT 60.490 43.478 0.00 0.00 46.82 2.71
3502 4071 4.048504 GTGTGGGCAAAACAAGTAATGTC 58.951 43.478 0.00 0.00 42.99 3.06
3503 4072 3.068873 TGTGGGCAAAACAAGTAATGTCC 59.931 43.478 2.80 2.80 42.99 4.02
3504 4073 3.068873 GTGGGCAAAACAAGTAATGTCCA 59.931 43.478 7.22 7.22 44.77 4.02
3505 4074 3.068873 TGGGCAAAACAAGTAATGTCCAC 59.931 43.478 7.22 0.00 42.30 4.02
3506 4075 3.068873 GGGCAAAACAAGTAATGTCCACA 59.931 43.478 4.49 0.00 42.99 4.17
3507 4076 4.048504 GGCAAAACAAGTAATGTCCACAC 58.951 43.478 0.00 0.00 42.99 3.82
3508 4077 4.440802 GGCAAAACAAGTAATGTCCACACA 60.441 41.667 0.00 0.00 42.99 3.72
3509 4078 4.502645 GCAAAACAAGTAATGTCCACACAC 59.497 41.667 0.00 0.00 42.99 3.82
3510 4079 4.911514 AAACAAGTAATGTCCACACACC 57.088 40.909 0.00 0.00 42.99 4.16
3511 4080 3.857157 ACAAGTAATGTCCACACACCT 57.143 42.857 0.00 0.00 37.96 4.00
3512 4081 4.164843 ACAAGTAATGTCCACACACCTT 57.835 40.909 0.00 0.00 37.96 3.50
3513 4082 4.532834 ACAAGTAATGTCCACACACCTTT 58.467 39.130 0.00 0.00 37.96 3.11
3514 4083 4.953579 ACAAGTAATGTCCACACACCTTTT 59.046 37.500 0.00 0.00 37.96 2.27
3515 4084 5.420739 ACAAGTAATGTCCACACACCTTTTT 59.579 36.000 0.00 0.00 37.96 1.94
3529 4098 3.173323 TTTTTCCCCTCCCGACCC 58.827 61.111 0.00 0.00 0.00 4.46
3530 4099 2.540963 TTTTTCCCCTCCCGACCCC 61.541 63.158 0.00 0.00 0.00 4.95
3531 4100 3.510432 TTTTCCCCTCCCGACCCCT 62.510 63.158 0.00 0.00 0.00 4.79
3532 4101 3.937372 TTTCCCCTCCCGACCCCTC 62.937 68.421 0.00 0.00 0.00 4.30
3534 4103 4.862823 CCCCTCCCGACCCCTCTC 62.863 77.778 0.00 0.00 0.00 3.20
3535 4104 4.075793 CCCTCCCGACCCCTCTCA 62.076 72.222 0.00 0.00 0.00 3.27
3536 4105 2.760385 CCTCCCGACCCCTCTCAC 60.760 72.222 0.00 0.00 0.00 3.51
3537 4106 2.037367 CTCCCGACCCCTCTCACA 59.963 66.667 0.00 0.00 0.00 3.58
3538 4107 2.283676 TCCCGACCCCTCTCACAC 60.284 66.667 0.00 0.00 0.00 3.82
3539 4108 3.760035 CCCGACCCCTCTCACACG 61.760 72.222 0.00 0.00 0.00 4.49
3540 4109 4.436998 CCGACCCCTCTCACACGC 62.437 72.222 0.00 0.00 0.00 5.34
3541 4110 4.778415 CGACCCCTCTCACACGCG 62.778 72.222 3.53 3.53 0.00 6.01
3542 4111 3.681835 GACCCCTCTCACACGCGT 61.682 66.667 5.58 5.58 0.00 6.01
3543 4112 3.916392 GACCCCTCTCACACGCGTG 62.916 68.421 35.99 35.99 45.08 5.34
3556 4125 3.578272 GCGTGCGTGTGGGTGAAA 61.578 61.111 0.00 0.00 0.00 2.69
3557 4126 2.903547 GCGTGCGTGTGGGTGAAAT 61.904 57.895 0.00 0.00 0.00 2.17
3558 4127 1.570347 GCGTGCGTGTGGGTGAAATA 61.570 55.000 0.00 0.00 0.00 1.40
3559 4128 0.442310 CGTGCGTGTGGGTGAAATAG 59.558 55.000 0.00 0.00 0.00 1.73
3560 4129 1.803334 GTGCGTGTGGGTGAAATAGA 58.197 50.000 0.00 0.00 0.00 1.98
3561 4130 2.356135 GTGCGTGTGGGTGAAATAGAT 58.644 47.619 0.00 0.00 0.00 1.98
3562 4131 3.527533 GTGCGTGTGGGTGAAATAGATA 58.472 45.455 0.00 0.00 0.00 1.98
3563 4132 3.936453 GTGCGTGTGGGTGAAATAGATAA 59.064 43.478 0.00 0.00 0.00 1.75
3564 4133 3.936453 TGCGTGTGGGTGAAATAGATAAC 59.064 43.478 0.00 0.00 0.00 1.89
3565 4134 3.000925 GCGTGTGGGTGAAATAGATAACG 59.999 47.826 0.00 0.00 0.00 3.18
3566 4135 3.000925 CGTGTGGGTGAAATAGATAACGC 59.999 47.826 0.00 0.00 0.00 4.84
3567 4136 3.311596 GTGTGGGTGAAATAGATAACGCC 59.688 47.826 0.00 0.00 0.00 5.68
3571 4140 4.749245 GGTGAAATAGATAACGCCCATG 57.251 45.455 0.00 0.00 0.00 3.66
3572 4141 4.134563 GGTGAAATAGATAACGCCCATGT 58.865 43.478 0.00 0.00 0.00 3.21
3573 4142 5.302360 GGTGAAATAGATAACGCCCATGTA 58.698 41.667 0.00 0.00 0.00 2.29
3574 4143 5.408604 GGTGAAATAGATAACGCCCATGTAG 59.591 44.000 0.00 0.00 0.00 2.74
3575 4144 4.994852 TGAAATAGATAACGCCCATGTAGC 59.005 41.667 0.00 0.00 0.00 3.58
3576 4145 4.617253 AATAGATAACGCCCATGTAGCA 57.383 40.909 5.88 0.00 0.00 3.49
3577 4146 2.240493 AGATAACGCCCATGTAGCAC 57.760 50.000 5.88 0.00 0.00 4.40
3578 4147 1.762957 AGATAACGCCCATGTAGCACT 59.237 47.619 5.88 0.00 0.00 4.40
3579 4148 2.963101 AGATAACGCCCATGTAGCACTA 59.037 45.455 5.88 0.00 0.00 2.74
3580 4149 3.578716 AGATAACGCCCATGTAGCACTAT 59.421 43.478 5.88 1.91 0.00 2.12
3581 4150 4.770531 AGATAACGCCCATGTAGCACTATA 59.229 41.667 5.88 0.00 0.00 1.31
3582 4151 3.830744 AACGCCCATGTAGCACTATAA 57.169 42.857 5.88 0.00 0.00 0.98
3583 4152 3.830744 ACGCCCATGTAGCACTATAAA 57.169 42.857 5.88 0.00 0.00 1.40
3584 4153 4.145365 ACGCCCATGTAGCACTATAAAA 57.855 40.909 5.88 0.00 0.00 1.52
3585 4154 4.519213 ACGCCCATGTAGCACTATAAAAA 58.481 39.130 5.88 0.00 0.00 1.94
3586 4155 4.574828 ACGCCCATGTAGCACTATAAAAAG 59.425 41.667 5.88 0.00 0.00 2.27
3587 4156 4.024048 CGCCCATGTAGCACTATAAAAAGG 60.024 45.833 5.88 0.00 0.00 3.11
3588 4157 4.261614 GCCCATGTAGCACTATAAAAAGGC 60.262 45.833 0.31 0.00 0.00 4.35
3589 4158 4.887071 CCCATGTAGCACTATAAAAAGGCA 59.113 41.667 0.00 0.00 0.00 4.75
3590 4159 5.536161 CCCATGTAGCACTATAAAAAGGCAT 59.464 40.000 0.00 0.00 0.00 4.40
3591 4160 6.441274 CCATGTAGCACTATAAAAAGGCATG 58.559 40.000 0.00 0.00 0.00 4.06
3592 4161 6.441274 CATGTAGCACTATAAAAAGGCATGG 58.559 40.000 0.00 0.00 0.00 3.66
3593 4162 4.338118 TGTAGCACTATAAAAAGGCATGGC 59.662 41.667 12.14 12.14 0.00 4.40
3594 4163 3.364549 AGCACTATAAAAAGGCATGGCA 58.635 40.909 22.64 0.00 0.00 4.92
3595 4164 3.768757 AGCACTATAAAAAGGCATGGCAA 59.231 39.130 22.64 1.41 0.00 4.52
3596 4165 4.222588 AGCACTATAAAAAGGCATGGCAAA 59.777 37.500 22.64 1.78 0.00 3.68
3597 4166 4.934602 GCACTATAAAAAGGCATGGCAAAA 59.065 37.500 22.64 2.16 0.00 2.44
3598 4167 5.411053 GCACTATAAAAAGGCATGGCAAAAA 59.589 36.000 22.64 2.92 0.00 1.94
3633 4202 3.375782 AAAAAGAGAGTTGCCATGTGC 57.624 42.857 0.00 0.00 41.77 4.57
3634 4203 2.283145 AAAGAGAGTTGCCATGTGCT 57.717 45.000 7.54 0.00 42.00 4.40
3635 4204 1.818642 AAGAGAGTTGCCATGTGCTC 58.181 50.000 7.54 0.00 42.00 4.26
3636 4205 0.689055 AGAGAGTTGCCATGTGCTCA 59.311 50.000 7.54 0.00 42.00 4.26
3637 4206 1.281287 AGAGAGTTGCCATGTGCTCAT 59.719 47.619 7.54 0.00 42.00 2.90
3638 4207 2.502947 AGAGAGTTGCCATGTGCTCATA 59.497 45.455 0.04 0.00 42.00 2.15
3639 4208 3.054875 AGAGAGTTGCCATGTGCTCATAA 60.055 43.478 0.04 0.00 42.00 1.90
3640 4209 3.276857 AGAGTTGCCATGTGCTCATAAG 58.723 45.455 0.04 0.00 42.00 1.73
3671 4240 4.503741 GCAGTTGCCATGTAAAGAGAAA 57.496 40.909 0.00 0.00 34.31 2.52
3672 4241 4.479619 GCAGTTGCCATGTAAAGAGAAAG 58.520 43.478 0.00 0.00 34.31 2.62
3673 4242 4.216257 GCAGTTGCCATGTAAAGAGAAAGA 59.784 41.667 0.00 0.00 34.31 2.52
3674 4243 5.618640 GCAGTTGCCATGTAAAGAGAAAGAG 60.619 44.000 0.00 0.00 34.31 2.85
3675 4244 5.471456 CAGTTGCCATGTAAAGAGAAAGAGT 59.529 40.000 0.00 0.00 0.00 3.24
3676 4245 6.016777 CAGTTGCCATGTAAAGAGAAAGAGTT 60.017 38.462 0.00 0.00 0.00 3.01
3677 4246 5.947228 TGCCATGTAAAGAGAAAGAGTTG 57.053 39.130 0.00 0.00 0.00 3.16
3678 4247 4.216257 TGCCATGTAAAGAGAAAGAGTTGC 59.784 41.667 0.00 0.00 0.00 4.17
3679 4248 4.379918 GCCATGTAAAGAGAAAGAGTTGCC 60.380 45.833 0.00 0.00 0.00 4.52
3680 4249 4.761739 CCATGTAAAGAGAAAGAGTTGCCA 59.238 41.667 0.00 0.00 0.00 4.92
3681 4250 5.416952 CCATGTAAAGAGAAAGAGTTGCCAT 59.583 40.000 0.00 0.00 0.00 4.40
3682 4251 6.404074 CCATGTAAAGAGAAAGAGTTGCCATC 60.404 42.308 0.00 0.00 0.00 3.51
3683 4252 5.869579 TGTAAAGAGAAAGAGTTGCCATCT 58.130 37.500 0.00 0.00 0.00 2.90
3684 4253 5.702670 TGTAAAGAGAAAGAGTTGCCATCTG 59.297 40.000 0.00 0.00 0.00 2.90
3685 4254 2.709213 AGAGAAAGAGTTGCCATCTGC 58.291 47.619 0.00 0.00 41.77 4.26
3686 4255 2.305343 AGAGAAAGAGTTGCCATCTGCT 59.695 45.455 0.00 0.00 42.00 4.24
3687 4256 3.080319 GAGAAAGAGTTGCCATCTGCTT 58.920 45.455 0.00 0.00 42.00 3.91
3688 4257 4.019860 AGAGAAAGAGTTGCCATCTGCTTA 60.020 41.667 0.00 0.00 42.00 3.09
3689 4258 4.006319 AGAAAGAGTTGCCATCTGCTTAC 58.994 43.478 0.00 0.00 42.00 2.34
3690 4259 2.015736 AGAGTTGCCATCTGCTTACG 57.984 50.000 0.00 0.00 42.00 3.18
3691 4260 1.276421 AGAGTTGCCATCTGCTTACGT 59.724 47.619 0.00 0.00 42.00 3.57
3692 4261 1.394917 GAGTTGCCATCTGCTTACGTG 59.605 52.381 0.00 0.00 42.00 4.49
3693 4262 0.179189 GTTGCCATCTGCTTACGTGC 60.179 55.000 0.00 0.00 42.00 5.34
3694 4263 0.605050 TTGCCATCTGCTTACGTGCA 60.605 50.000 0.00 0.00 42.00 4.57
3695 4264 1.298157 TGCCATCTGCTTACGTGCAC 61.298 55.000 6.82 6.82 42.00 4.57
3696 4265 1.709760 CCATCTGCTTACGTGCACG 59.290 57.895 35.99 35.99 46.33 5.34
3697 4266 1.059369 CATCTGCTTACGTGCACGC 59.941 57.895 37.35 22.10 44.43 5.34
3698 4267 1.079819 ATCTGCTTACGTGCACGCT 60.080 52.632 37.35 25.67 44.43 5.07
3699 4268 0.172578 ATCTGCTTACGTGCACGCTA 59.827 50.000 37.35 24.65 44.43 4.26
3700 4269 0.456142 TCTGCTTACGTGCACGCTAG 60.456 55.000 37.35 31.58 44.43 3.42
3701 4270 1.413767 CTGCTTACGTGCACGCTAGG 61.414 60.000 37.35 26.46 44.43 3.02
3702 4271 2.165301 GCTTACGTGCACGCTAGGG 61.165 63.158 37.35 22.80 44.43 3.53
3719 4288 3.981308 GCAGTTGCCACGTACCAT 58.019 55.556 0.00 0.00 34.31 3.55
3720 4289 1.501741 GCAGTTGCCACGTACCATG 59.498 57.895 0.00 0.00 34.31 3.66
3721 4290 1.501741 CAGTTGCCACGTACCATGC 59.498 57.895 0.00 0.00 0.00 4.06
3722 4291 1.072332 AGTTGCCACGTACCATGCA 59.928 52.632 0.00 0.00 0.00 3.96
3723 4292 0.536233 AGTTGCCACGTACCATGCAA 60.536 50.000 6.51 6.51 41.08 4.08
3724 4293 0.312416 GTTGCCACGTACCATGCAAA 59.688 50.000 10.92 0.00 44.44 3.68
3725 4294 1.032794 TTGCCACGTACCATGCAAAA 58.967 45.000 7.81 0.00 40.46 2.44
3726 4295 1.032794 TGCCACGTACCATGCAAAAA 58.967 45.000 0.00 0.00 0.00 1.94
3727 4296 1.269309 TGCCACGTACCATGCAAAAAC 60.269 47.619 0.00 0.00 0.00 2.43
3728 4297 1.269309 GCCACGTACCATGCAAAAACA 60.269 47.619 0.00 0.00 0.00 2.83
3729 4298 2.389998 CCACGTACCATGCAAAAACAC 58.610 47.619 0.00 0.00 0.00 3.32
3730 4299 2.223595 CCACGTACCATGCAAAAACACA 60.224 45.455 0.00 0.00 0.00 3.72
3731 4300 3.551863 CCACGTACCATGCAAAAACACAT 60.552 43.478 0.00 0.00 0.00 3.21
3732 4301 3.424861 CACGTACCATGCAAAAACACATG 59.575 43.478 0.00 0.00 42.67 3.21
3737 4306 3.256285 CATGCAAAAACACATGGCAAC 57.744 42.857 0.00 0.00 39.98 4.17
3738 4307 2.687700 TGCAAAAACACATGGCAACT 57.312 40.000 0.00 0.00 37.61 3.16
3739 4308 2.548875 TGCAAAAACACATGGCAACTC 58.451 42.857 0.00 0.00 37.61 3.01
3740 4309 1.522258 GCAAAAACACATGGCAACTCG 59.478 47.619 0.00 0.00 37.61 4.18
3741 4310 2.126467 CAAAAACACATGGCAACTCGG 58.874 47.619 0.00 0.00 37.61 4.63
3742 4311 0.673437 AAAACACATGGCAACTCGGG 59.327 50.000 0.00 0.00 37.61 5.14
3743 4312 0.467290 AAACACATGGCAACTCGGGT 60.467 50.000 0.00 0.00 37.61 5.28
3744 4313 0.398696 AACACATGGCAACTCGGGTA 59.601 50.000 0.00 0.00 37.61 3.69
3745 4314 0.398696 ACACATGGCAACTCGGGTAA 59.601 50.000 0.00 0.00 37.61 2.85
3746 4315 1.202830 ACACATGGCAACTCGGGTAAA 60.203 47.619 0.00 0.00 37.61 2.01
3747 4316 1.883275 CACATGGCAACTCGGGTAAAA 59.117 47.619 0.00 0.00 37.61 1.52
3748 4317 2.095263 CACATGGCAACTCGGGTAAAAG 60.095 50.000 0.00 0.00 37.61 2.27
3749 4318 2.224670 ACATGGCAACTCGGGTAAAAGA 60.225 45.455 0.00 0.00 37.61 2.52
3750 4319 2.178912 TGGCAACTCGGGTAAAAGAG 57.821 50.000 0.00 0.00 40.16 2.85
3751 4320 1.695242 TGGCAACTCGGGTAAAAGAGA 59.305 47.619 0.00 0.00 37.87 3.10
3752 4321 2.289444 TGGCAACTCGGGTAAAAGAGAG 60.289 50.000 0.00 0.00 37.87 3.20
3753 4322 2.289506 GGCAACTCGGGTAAAAGAGAGT 60.290 50.000 0.00 0.00 44.81 3.24
3756 4325 3.041508 ACTCGGGTAAAAGAGAGTTGC 57.958 47.619 0.00 0.00 40.64 4.17
3757 4326 2.289506 ACTCGGGTAAAAGAGAGTTGCC 60.290 50.000 0.00 0.00 40.64 4.52
3758 4327 1.695242 TCGGGTAAAAGAGAGTTGCCA 59.305 47.619 0.00 0.00 32.79 4.92
3759 4328 2.304761 TCGGGTAAAAGAGAGTTGCCAT 59.695 45.455 0.00 0.00 32.79 4.40
3760 4329 2.678336 CGGGTAAAAGAGAGTTGCCATC 59.322 50.000 0.00 0.00 32.79 3.51
3761 4330 3.619979 CGGGTAAAAGAGAGTTGCCATCT 60.620 47.826 0.00 0.00 32.79 2.90
3762 4331 3.691609 GGGTAAAAGAGAGTTGCCATCTG 59.308 47.826 0.00 0.00 32.79 2.90
3763 4332 3.127721 GGTAAAAGAGAGTTGCCATCTGC 59.872 47.826 0.00 0.00 41.77 4.26
3764 4333 2.875094 AAAGAGAGTTGCCATCTGCT 57.125 45.000 0.00 0.00 42.00 4.24
3765 4334 2.875094 AAGAGAGTTGCCATCTGCTT 57.125 45.000 0.00 0.00 42.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.054922 ACAAATTTCGGATTTGATGAACATTTT 57.945 25.926 23.03 3.46 40.42 1.82
3 4 7.871973 TGAACAAATTTCGGATTTGATGAACAT 59.128 29.630 23.03 0.00 40.42 2.71
4 5 7.205992 TGAACAAATTTCGGATTTGATGAACA 58.794 30.769 23.03 14.74 40.42 3.18
5 6 7.636259 TGAACAAATTTCGGATTTGATGAAC 57.364 32.000 23.03 13.25 40.42 3.18
6 7 8.087136 TGATGAACAAATTTCGGATTTGATGAA 58.913 29.630 23.03 11.43 40.42 2.57
7 8 7.600960 TGATGAACAAATTTCGGATTTGATGA 58.399 30.769 23.03 12.02 40.42 2.92
8 9 7.815398 TGATGAACAAATTTCGGATTTGATG 57.185 32.000 23.03 6.61 40.42 3.07
9 10 9.439500 AATTGATGAACAAATTTCGGATTTGAT 57.561 25.926 23.03 15.58 42.03 2.57
10 11 8.830201 AATTGATGAACAAATTTCGGATTTGA 57.170 26.923 23.03 8.78 42.03 2.69
96 97 8.174484 TCGACGAACAAATTTTGAATTTCAAA 57.826 26.923 18.29 18.29 43.84 2.69
97 98 7.742019 TCGACGAACAAATTTTGAATTTCAA 57.258 28.000 15.81 7.74 34.03 2.69
98 99 7.922505 ATCGACGAACAAATTTTGAATTTCA 57.077 28.000 15.81 0.00 0.00 2.69
99 100 9.289999 GAAATCGACGAACAAATTTTGAATTTC 57.710 29.630 15.81 8.19 0.00 2.17
100 101 8.812329 TGAAATCGACGAACAAATTTTGAATTT 58.188 25.926 15.81 0.00 0.00 1.82
101 102 8.346476 TGAAATCGACGAACAAATTTTGAATT 57.654 26.923 15.81 0.62 0.00 2.17
102 103 7.922505 TGAAATCGACGAACAAATTTTGAAT 57.077 28.000 15.81 4.26 0.00 2.57
103 104 7.742019 TTGAAATCGACGAACAAATTTTGAA 57.258 28.000 15.81 0.00 0.00 2.69
104 105 7.742019 TTTGAAATCGACGAACAAATTTTGA 57.258 28.000 15.81 0.85 0.00 2.69
105 106 8.970529 ATTTTGAAATCGACGAACAAATTTTG 57.029 26.923 20.19 7.59 32.05 2.44
106 107 9.980780 AAATTTTGAAATCGACGAACAAATTTT 57.019 22.222 23.16 23.16 33.45 1.82
107 108 9.419737 CAAATTTTGAAATCGACGAACAAATTT 57.580 25.926 20.19 19.19 32.05 1.82
108 109 8.599774 ACAAATTTTGAAATCGACGAACAAATT 58.400 25.926 15.81 16.19 32.05 1.82
109 110 8.125728 ACAAATTTTGAAATCGACGAACAAAT 57.874 26.923 15.81 10.85 32.05 2.32
110 111 7.513190 ACAAATTTTGAAATCGACGAACAAA 57.487 28.000 15.81 17.58 0.00 2.83
111 112 7.273598 TGAACAAATTTTGAAATCGACGAACAA 59.726 29.630 15.81 6.52 0.00 2.83
112 113 6.747739 TGAACAAATTTTGAAATCGACGAACA 59.252 30.769 15.81 0.00 0.00 3.18
113 114 7.144007 TGAACAAATTTTGAAATCGACGAAC 57.856 32.000 15.81 0.00 0.00 3.95
114 115 7.742019 TTGAACAAATTTTGAAATCGACGAA 57.258 28.000 15.81 0.40 0.00 3.85
115 116 7.922505 ATTGAACAAATTTTGAAATCGACGA 57.077 28.000 15.81 0.00 0.00 4.20
171 172 9.952030 ACAAAATTGGTATTCCGGAATATTTTT 57.048 25.926 33.61 28.46 35.90 1.94
172 173 9.952030 AACAAAATTGGTATTCCGGAATATTTT 57.048 25.926 33.61 30.13 35.90 1.82
173 174 9.594478 GAACAAAATTGGTATTCCGGAATATTT 57.406 29.630 33.61 27.16 35.90 1.40
174 175 8.754080 TGAACAAAATTGGTATTCCGGAATATT 58.246 29.630 33.61 23.76 35.90 1.28
175 176 8.299990 TGAACAAAATTGGTATTCCGGAATAT 57.700 30.769 33.61 19.79 35.90 1.28
176 177 7.704578 TGAACAAAATTGGTATTCCGGAATA 57.295 32.000 29.13 29.13 36.30 1.75
177 178 6.597832 TGAACAAAATTGGTATTCCGGAAT 57.402 33.333 31.30 31.30 36.30 3.01
178 179 6.209589 TGATGAACAAAATTGGTATTCCGGAA 59.790 34.615 21.37 21.37 36.30 4.30
179 180 5.712446 TGATGAACAAAATTGGTATTCCGGA 59.288 36.000 0.00 0.00 36.30 5.14
180 181 5.960113 TGATGAACAAAATTGGTATTCCGG 58.040 37.500 0.00 0.00 36.30 5.14
181 182 7.090173 ACTTGATGAACAAAATTGGTATTCCG 58.910 34.615 0.00 0.00 38.08 4.30
182 183 8.831715 AACTTGATGAACAAAATTGGTATTCC 57.168 30.769 0.00 0.00 38.08 3.01
196 197 9.993881 CGATGAACATTTTTAAACTTGATGAAC 57.006 29.630 4.09 1.62 0.00 3.18
197 198 9.743057 ACGATGAACATTTTTAAACTTGATGAA 57.257 25.926 0.00 0.00 0.00 2.57
213 214 9.689976 TGAACAAAATTTGAATACGATGAACAT 57.310 25.926 13.19 0.00 0.00 2.71
214 215 9.689976 ATGAACAAAATTTGAATACGATGAACA 57.310 25.926 13.19 0.00 0.00 3.18
344 345 9.260002 GTTCCATATGTCAACAAAAGTGAATTT 57.740 29.630 1.24 0.00 0.00 1.82
345 346 8.641541 AGTTCCATATGTCAACAAAAGTGAATT 58.358 29.630 14.21 0.00 0.00 2.17
346 347 8.181904 AGTTCCATATGTCAACAAAAGTGAAT 57.818 30.769 14.21 0.00 0.00 2.57
347 348 7.581213 AGTTCCATATGTCAACAAAAGTGAA 57.419 32.000 14.21 0.00 0.00 3.18
348 349 7.581213 AAGTTCCATATGTCAACAAAAGTGA 57.419 32.000 14.21 0.00 0.00 3.41
349 350 8.647143 AAAAGTTCCATATGTCAACAAAAGTG 57.353 30.769 14.21 0.00 0.00 3.16
350 351 8.695456 AGAAAAGTTCCATATGTCAACAAAAGT 58.305 29.630 14.21 0.00 0.00 2.66
435 436 2.041153 CTGAACGCCCCAGCTTTTT 58.959 52.632 0.00 0.00 36.60 1.94
436 437 3.763671 CTGAACGCCCCAGCTTTT 58.236 55.556 0.00 0.00 36.60 2.27
446 447 2.124860 ATAACCGGGGCTGAACGC 60.125 61.111 6.32 0.00 38.13 4.84
447 448 1.817941 CCATAACCGGGGCTGAACG 60.818 63.158 6.32 0.00 0.00 3.95
448 449 1.453197 CCCATAACCGGGGCTGAAC 60.453 63.158 6.32 0.00 43.21 3.18
449 450 3.003230 CCCATAACCGGGGCTGAA 58.997 61.111 6.32 0.00 43.21 3.02
459 460 3.573491 GACGCGCTGGCCCATAAC 61.573 66.667 5.73 0.00 35.02 1.89
460 461 4.089239 TGACGCGCTGGCCCATAA 62.089 61.111 5.73 0.00 35.02 1.90
461 462 4.830765 GTGACGCGCTGGCCCATA 62.831 66.667 5.73 0.00 35.02 2.74
473 474 2.137425 TCCTATATGGGCGCGTGACG 62.137 60.000 8.43 0.00 38.79 4.35
474 475 0.388649 CTCCTATATGGGCGCGTGAC 60.389 60.000 8.43 0.00 36.20 3.67
475 476 1.964448 CTCCTATATGGGCGCGTGA 59.036 57.895 8.43 0.00 36.20 4.35
476 477 1.738099 GCTCCTATATGGGCGCGTG 60.738 63.158 8.43 0.00 36.20 5.34
477 478 2.159819 CTGCTCCTATATGGGCGCGT 62.160 60.000 14.49 0.00 36.10 6.01
478 479 1.446792 CTGCTCCTATATGGGCGCG 60.447 63.158 14.49 0.00 36.10 6.86
479 480 1.743252 GCTGCTCCTATATGGGCGC 60.743 63.158 12.81 12.81 35.60 6.53
480 481 1.078848 GGCTGCTCCTATATGGGCG 60.079 63.158 0.00 0.00 35.60 6.13
481 482 1.078848 CGGCTGCTCCTATATGGGC 60.079 63.158 0.00 0.00 36.20 5.36
482 483 0.036952 CACGGCTGCTCCTATATGGG 60.037 60.000 0.00 0.00 36.20 4.00
483 484 0.036952 CCACGGCTGCTCCTATATGG 60.037 60.000 0.00 0.00 37.10 2.74
484 485 0.671781 GCCACGGCTGCTCCTATATG 60.672 60.000 0.00 0.00 38.26 1.78
485 486 1.674057 GCCACGGCTGCTCCTATAT 59.326 57.895 0.00 0.00 38.26 0.86
486 487 2.507854 GGCCACGGCTGCTCCTATA 61.508 63.158 8.20 0.00 41.60 1.31
487 488 3.866582 GGCCACGGCTGCTCCTAT 61.867 66.667 8.20 0.00 41.60 2.57
491 492 2.965716 AATATGGGCCACGGCTGCTC 62.966 60.000 9.28 0.00 41.60 4.26
492 493 2.965716 GAATATGGGCCACGGCTGCT 62.966 60.000 9.28 0.00 41.60 4.24
493 494 2.519302 AATATGGGCCACGGCTGC 60.519 61.111 9.28 0.00 41.60 5.25
494 495 1.898574 GGAATATGGGCCACGGCTG 60.899 63.158 9.28 0.00 41.60 4.85
495 496 2.515901 GGAATATGGGCCACGGCT 59.484 61.111 9.28 0.00 41.60 5.52
496 497 2.386064 TACGGAATATGGGCCACGGC 62.386 60.000 9.28 0.00 41.06 5.68
497 498 0.320421 CTACGGAATATGGGCCACGG 60.320 60.000 9.28 2.72 0.00 4.94
498 499 0.320421 CCTACGGAATATGGGCCACG 60.320 60.000 9.28 10.63 0.00 4.94
499 500 0.605589 GCCTACGGAATATGGGCCAC 60.606 60.000 9.28 0.00 37.12 5.01
500 501 0.766674 AGCCTACGGAATATGGGCCA 60.767 55.000 9.61 9.61 43.36 5.36
501 502 0.036294 GAGCCTACGGAATATGGGCC 60.036 60.000 0.00 0.00 43.36 5.80
502 503 0.977395 AGAGCCTACGGAATATGGGC 59.023 55.000 0.00 0.00 42.74 5.36
503 504 2.494073 GAGAGAGCCTACGGAATATGGG 59.506 54.545 0.00 0.00 0.00 4.00
504 505 3.057174 GTGAGAGAGCCTACGGAATATGG 60.057 52.174 0.00 0.00 0.00 2.74
505 506 3.823873 AGTGAGAGAGCCTACGGAATATG 59.176 47.826 0.00 0.00 0.00 1.78
506 507 3.823873 CAGTGAGAGAGCCTACGGAATAT 59.176 47.826 0.00 0.00 0.00 1.28
507 508 3.215151 CAGTGAGAGAGCCTACGGAATA 58.785 50.000 0.00 0.00 0.00 1.75
531 532 1.623542 AAGTGGGCCGAGGGATACAC 61.624 60.000 0.00 0.00 39.74 2.90
567 568 0.664767 CGGCCGAGATCTTTCGATCC 60.665 60.000 24.07 5.94 45.83 3.36
818 827 4.360563 CACTACGCATACGAGAGGAAATT 58.639 43.478 0.00 0.00 43.93 1.82
827 836 3.770263 AAACTAGCACTACGCATACGA 57.230 42.857 0.00 0.00 46.13 3.43
830 839 6.387465 GGATCATAAACTAGCACTACGCATA 58.613 40.000 0.00 0.00 46.13 3.14
841 850 1.792949 GCGTGGCGGATCATAAACTAG 59.207 52.381 0.00 0.00 0.00 2.57
978 987 0.108138 CGACCCCTTCTTACCTGCAG 60.108 60.000 6.78 6.78 0.00 4.41
1244 1256 8.821817 ACATATAGCTCTGTCTATCACTCTAGA 58.178 37.037 0.00 0.00 32.07 2.43
1261 1275 7.526041 TGGGATAAAATCAACCACATATAGCT 58.474 34.615 0.00 0.00 0.00 3.32
1262 1276 7.759489 TGGGATAAAATCAACCACATATAGC 57.241 36.000 0.00 0.00 0.00 2.97
1427 1441 4.700213 TGAGGTGCCTAAATAAGCAAGAAC 59.300 41.667 0.00 0.00 41.48 3.01
1462 1476 0.824759 GACCTGGCGAGGAATACTGT 59.175 55.000 23.01 0.00 42.93 3.55
1527 1542 7.602719 ACAGACATGTCAACAGTTGTCCTGT 62.603 44.000 27.02 17.03 46.62 4.00
1530 1545 3.206150 ACAGACATGTCAACAGTTGTCC 58.794 45.455 27.02 6.05 36.85 4.02
1588 1604 1.407299 GCATGGCATCAGAGGTACACA 60.407 52.381 0.00 0.00 0.00 3.72
1661 1677 3.188667 GCATCACAGGCATATCATCACAG 59.811 47.826 0.00 0.00 0.00 3.66
1768 1823 4.023707 CCTTCTTTTGACGAGCTGAACAAT 60.024 41.667 0.00 0.00 0.00 2.71
2197 2420 4.687219 GCAAGGAGGATACACTAAAGGCAT 60.687 45.833 0.00 0.00 41.41 4.40
2651 3074 1.677217 GCCTTGAACGCCTTCATCTCT 60.677 52.381 0.00 0.00 36.26 3.10
2684 3107 0.526662 GGTTCATCCTCTCGACACGT 59.473 55.000 0.00 0.00 0.00 4.49
2717 3140 4.445545 GCTTTCTTCGTGCGGGCG 62.446 66.667 0.00 0.00 0.00 6.13
2817 3240 5.469760 CCAGCCCCAAAACAAAATTTAGAAG 59.530 40.000 0.00 0.00 0.00 2.85
2856 3279 2.332063 ACCAGGTATCAAAGCCATCG 57.668 50.000 0.00 0.00 0.00 3.84
2996 3419 6.492087 TCAGTACTTCCACCAAAAATTTAGGG 59.508 38.462 12.65 9.71 0.00 3.53
2998 3421 7.075741 CGTCAGTACTTCCACCAAAAATTTAG 58.924 38.462 0.00 0.00 0.00 1.85
3056 3479 1.693062 AGCTGAGATACTCCATGCCAG 59.307 52.381 0.00 0.00 0.00 4.85
3057 3480 1.690893 GAGCTGAGATACTCCATGCCA 59.309 52.381 0.00 0.00 0.00 4.92
3058 3481 1.690893 TGAGCTGAGATACTCCATGCC 59.309 52.381 0.00 0.00 31.65 4.40
3059 3482 3.465742 TTGAGCTGAGATACTCCATGC 57.534 47.619 0.00 0.00 31.65 4.06
3121 3549 9.835389 TTGTCAAGAAAATCAGAAATTTTGGAT 57.165 25.926 0.78 0.00 32.03 3.41
3154 3584 8.868522 ATTTGGACACAAGAAGATAATTCAGA 57.131 30.769 0.00 0.00 37.97 3.27
3183 3613 7.053316 AGTTTTGGAATGTTGATTCATCACA 57.947 32.000 0.00 0.00 39.98 3.58
3285 3852 7.763528 TCTTTTACGACAAACACTGGTAGTTAA 59.236 33.333 0.00 0.00 0.00 2.01
3286 3853 7.264221 TCTTTTACGACAAACACTGGTAGTTA 58.736 34.615 0.00 0.00 0.00 2.24
3289 3856 6.592798 TTCTTTTACGACAAACACTGGTAG 57.407 37.500 0.00 0.00 0.00 3.18
3290 3857 6.981762 TTTCTTTTACGACAAACACTGGTA 57.018 33.333 0.00 0.00 0.00 3.25
3352 3921 7.225538 CCAAACACACTATCTAATGCCTCTAAG 59.774 40.741 0.00 0.00 0.00 2.18
3353 3922 7.047891 CCAAACACACTATCTAATGCCTCTAA 58.952 38.462 0.00 0.00 0.00 2.10
3354 3923 6.382859 TCCAAACACACTATCTAATGCCTCTA 59.617 38.462 0.00 0.00 0.00 2.43
3355 3924 5.189736 TCCAAACACACTATCTAATGCCTCT 59.810 40.000 0.00 0.00 0.00 3.69
3356 3925 5.294552 GTCCAAACACACTATCTAATGCCTC 59.705 44.000 0.00 0.00 0.00 4.70
3357 3926 5.186198 GTCCAAACACACTATCTAATGCCT 58.814 41.667 0.00 0.00 0.00 4.75
3365 3934 8.150945 AGACATATATGGTCCAAACACACTATC 58.849 37.037 16.96 0.03 35.89 2.08
3399 3968 0.108804 CACACACTTATCGGCGTCCT 60.109 55.000 6.85 0.00 0.00 3.85
3400 3969 0.108992 TCACACACTTATCGGCGTCC 60.109 55.000 6.85 0.00 0.00 4.79
3401 3970 1.269166 CTCACACACTTATCGGCGTC 58.731 55.000 6.85 0.00 0.00 5.19
3402 3971 0.736325 GCTCACACACTTATCGGCGT 60.736 55.000 6.85 0.00 0.00 5.68
3403 3972 1.742900 CGCTCACACACTTATCGGCG 61.743 60.000 0.00 0.00 35.75 6.46
3404 3973 0.736325 ACGCTCACACACTTATCGGC 60.736 55.000 0.00 0.00 0.00 5.54
3405 3974 1.710013 AACGCTCACACACTTATCGG 58.290 50.000 0.00 0.00 0.00 4.18
3406 3975 2.852413 CCTAACGCTCACACACTTATCG 59.148 50.000 0.00 0.00 0.00 2.92
3407 3976 3.187700 CCCTAACGCTCACACACTTATC 58.812 50.000 0.00 0.00 0.00 1.75
3408 3977 2.093658 CCCCTAACGCTCACACACTTAT 60.094 50.000 0.00 0.00 0.00 1.73
3409 3978 1.274167 CCCCTAACGCTCACACACTTA 59.726 52.381 0.00 0.00 0.00 2.24
3410 3979 0.034896 CCCCTAACGCTCACACACTT 59.965 55.000 0.00 0.00 0.00 3.16
3411 3980 1.671742 CCCCTAACGCTCACACACT 59.328 57.895 0.00 0.00 0.00 3.55
3412 3981 1.375523 CCCCCTAACGCTCACACAC 60.376 63.158 0.00 0.00 0.00 3.82
3413 3982 1.823169 GACCCCCTAACGCTCACACA 61.823 60.000 0.00 0.00 0.00 3.72
3414 3983 1.079336 GACCCCCTAACGCTCACAC 60.079 63.158 0.00 0.00 0.00 3.82
3415 3984 1.229082 AGACCCCCTAACGCTCACA 60.229 57.895 0.00 0.00 0.00 3.58
3416 3985 1.218316 CAGACCCCCTAACGCTCAC 59.782 63.158 0.00 0.00 0.00 3.51
3417 3986 2.656069 GCAGACCCCCTAACGCTCA 61.656 63.158 0.00 0.00 0.00 4.26
3418 3987 2.187163 GCAGACCCCCTAACGCTC 59.813 66.667 0.00 0.00 0.00 5.03
3419 3988 3.400054 GGCAGACCCCCTAACGCT 61.400 66.667 0.00 0.00 0.00 5.07
3429 3998 2.732289 ACAAATGTGTGGGCAGACC 58.268 52.632 0.00 0.00 36.31 3.85
3440 4009 6.547880 TGTTCCTTTATACACCACACAAATGT 59.452 34.615 0.00 0.00 40.80 2.71
3441 4010 6.976088 TGTTCCTTTATACACCACACAAATG 58.024 36.000 0.00 0.00 0.00 2.32
3442 4011 6.294508 GCTGTTCCTTTATACACCACACAAAT 60.295 38.462 0.00 0.00 0.00 2.32
3443 4012 5.009210 GCTGTTCCTTTATACACCACACAAA 59.991 40.000 0.00 0.00 0.00 2.83
3444 4013 4.517453 GCTGTTCCTTTATACACCACACAA 59.483 41.667 0.00 0.00 0.00 3.33
3445 4014 4.069304 GCTGTTCCTTTATACACCACACA 58.931 43.478 0.00 0.00 0.00 3.72
3446 4015 3.439129 GGCTGTTCCTTTATACACCACAC 59.561 47.826 0.00 0.00 0.00 3.82
3447 4016 3.560453 GGGCTGTTCCTTTATACACCACA 60.560 47.826 0.00 0.00 34.39 4.17
3448 4017 3.014623 GGGCTGTTCCTTTATACACCAC 58.985 50.000 0.00 0.00 34.39 4.16
3449 4018 2.645297 TGGGCTGTTCCTTTATACACCA 59.355 45.455 0.00 0.00 34.39 4.17
3450 4019 3.359695 TGGGCTGTTCCTTTATACACC 57.640 47.619 0.00 0.00 34.39 4.16
3451 4020 5.296035 GTGTATGGGCTGTTCCTTTATACAC 59.704 44.000 0.00 0.00 42.40 2.90
3452 4021 5.433526 GTGTATGGGCTGTTCCTTTATACA 58.566 41.667 0.00 0.00 35.67 2.29
3453 4022 4.820173 GGTGTATGGGCTGTTCCTTTATAC 59.180 45.833 0.00 0.00 34.39 1.47
3454 4023 4.724798 AGGTGTATGGGCTGTTCCTTTATA 59.275 41.667 0.00 0.00 34.39 0.98
3455 4024 3.527665 AGGTGTATGGGCTGTTCCTTTAT 59.472 43.478 0.00 0.00 34.39 1.40
3456 4025 2.916934 AGGTGTATGGGCTGTTCCTTTA 59.083 45.455 0.00 0.00 34.39 1.85
3457 4026 1.710809 AGGTGTATGGGCTGTTCCTTT 59.289 47.619 0.00 0.00 34.39 3.11
3458 4027 1.372501 AGGTGTATGGGCTGTTCCTT 58.627 50.000 0.00 0.00 34.39 3.36
3459 4028 1.838077 GTAGGTGTATGGGCTGTTCCT 59.162 52.381 0.00 0.00 34.39 3.36
3460 4029 1.472728 CGTAGGTGTATGGGCTGTTCC 60.473 57.143 0.00 0.00 0.00 3.62
3461 4030 1.206371 ACGTAGGTGTATGGGCTGTTC 59.794 52.381 0.00 0.00 0.00 3.18
3462 4031 1.066430 CACGTAGGTGTATGGGCTGTT 60.066 52.381 7.41 0.00 39.38 3.16
3463 4032 0.535335 CACGTAGGTGTATGGGCTGT 59.465 55.000 7.41 0.00 39.38 4.40
3464 4033 3.362581 CACGTAGGTGTATGGGCTG 57.637 57.895 7.41 0.00 39.38 4.85
3474 4043 0.107116 TGTTTTGCCCACACGTAGGT 60.107 50.000 5.59 0.00 0.00 3.08
3475 4044 1.001815 CTTGTTTTGCCCACACGTAGG 60.002 52.381 0.00 0.00 0.00 3.18
3476 4045 1.673920 ACTTGTTTTGCCCACACGTAG 59.326 47.619 0.00 0.00 0.00 3.51
3477 4046 1.752683 ACTTGTTTTGCCCACACGTA 58.247 45.000 0.00 0.00 0.00 3.57
3478 4047 1.752683 TACTTGTTTTGCCCACACGT 58.247 45.000 0.00 0.00 31.97 4.49
3479 4048 2.853731 TTACTTGTTTTGCCCACACG 57.146 45.000 0.00 0.00 0.00 4.49
3480 4049 4.048504 GACATTACTTGTTTTGCCCACAC 58.951 43.478 0.00 0.00 39.18 3.82
3481 4050 3.068873 GGACATTACTTGTTTTGCCCACA 59.931 43.478 0.00 0.00 39.18 4.17
3482 4051 3.068873 TGGACATTACTTGTTTTGCCCAC 59.931 43.478 0.00 0.00 39.18 4.61
3483 4052 3.068873 GTGGACATTACTTGTTTTGCCCA 59.931 43.478 0.00 0.00 39.18 5.36
3484 4053 3.068873 TGTGGACATTACTTGTTTTGCCC 59.931 43.478 0.00 0.00 39.18 5.36
3485 4054 4.048504 GTGTGGACATTACTTGTTTTGCC 58.951 43.478 0.00 0.00 39.18 4.52
3486 4055 4.502645 GTGTGTGGACATTACTTGTTTTGC 59.497 41.667 0.00 0.00 39.18 3.68
3487 4056 5.040635 GGTGTGTGGACATTACTTGTTTTG 58.959 41.667 0.00 0.00 39.18 2.44
3488 4057 4.953579 AGGTGTGTGGACATTACTTGTTTT 59.046 37.500 0.00 0.00 39.18 2.43
3489 4058 4.532834 AGGTGTGTGGACATTACTTGTTT 58.467 39.130 0.00 0.00 39.18 2.83
3490 4059 4.164843 AGGTGTGTGGACATTACTTGTT 57.835 40.909 0.00 0.00 39.18 2.83
3491 4060 3.857157 AGGTGTGTGGACATTACTTGT 57.143 42.857 0.00 0.00 42.79 3.16
3492 4061 5.514274 AAAAGGTGTGTGGACATTACTTG 57.486 39.130 0.00 0.00 33.63 3.16
3512 4081 2.540963 GGGGTCGGGAGGGGAAAAA 61.541 63.158 0.00 0.00 0.00 1.94
3513 4082 2.937136 GGGGTCGGGAGGGGAAAA 60.937 66.667 0.00 0.00 0.00 2.29
3514 4083 3.937372 GAGGGGTCGGGAGGGGAAA 62.937 68.421 0.00 0.00 0.00 3.13
3515 4084 4.410033 GAGGGGTCGGGAGGGGAA 62.410 72.222 0.00 0.00 0.00 3.97
3517 4086 4.862823 GAGAGGGGTCGGGAGGGG 62.863 77.778 0.00 0.00 0.00 4.79
3518 4087 4.075793 TGAGAGGGGTCGGGAGGG 62.076 72.222 0.00 0.00 0.00 4.30
3519 4088 2.760385 GTGAGAGGGGTCGGGAGG 60.760 72.222 0.00 0.00 0.00 4.30
3520 4089 2.037367 TGTGAGAGGGGTCGGGAG 59.963 66.667 0.00 0.00 0.00 4.30
3521 4090 2.283676 GTGTGAGAGGGGTCGGGA 60.284 66.667 0.00 0.00 0.00 5.14
3522 4091 3.760035 CGTGTGAGAGGGGTCGGG 61.760 72.222 0.00 0.00 0.00 5.14
3523 4092 4.436998 GCGTGTGAGAGGGGTCGG 62.437 72.222 0.00 0.00 0.00 4.79
3524 4093 4.778415 CGCGTGTGAGAGGGGTCG 62.778 72.222 0.00 0.00 0.00 4.79
3525 4094 3.681835 ACGCGTGTGAGAGGGGTC 61.682 66.667 12.93 0.00 30.31 4.46
3539 4108 1.570347 TATTTCACCCACACGCACGC 61.570 55.000 0.00 0.00 0.00 5.34
3540 4109 0.442310 CTATTTCACCCACACGCACG 59.558 55.000 0.00 0.00 0.00 5.34
3541 4110 1.803334 TCTATTTCACCCACACGCAC 58.197 50.000 0.00 0.00 0.00 5.34
3542 4111 2.779755 ATCTATTTCACCCACACGCA 57.220 45.000 0.00 0.00 0.00 5.24
3543 4112 3.000925 CGTTATCTATTTCACCCACACGC 59.999 47.826 0.00 0.00 0.00 5.34
3544 4113 3.000925 GCGTTATCTATTTCACCCACACG 59.999 47.826 0.00 0.00 0.00 4.49
3545 4114 3.311596 GGCGTTATCTATTTCACCCACAC 59.688 47.826 0.00 0.00 0.00 3.82
3546 4115 3.537580 GGCGTTATCTATTTCACCCACA 58.462 45.455 0.00 0.00 0.00 4.17
3547 4116 2.876550 GGGCGTTATCTATTTCACCCAC 59.123 50.000 0.00 0.00 36.07 4.61
3548 4117 2.506231 TGGGCGTTATCTATTTCACCCA 59.494 45.455 0.00 0.00 43.73 4.51
3549 4118 3.202829 TGGGCGTTATCTATTTCACCC 57.797 47.619 0.00 0.00 36.60 4.61
3550 4119 4.134563 ACATGGGCGTTATCTATTTCACC 58.865 43.478 0.00 0.00 0.00 4.02
3551 4120 5.107065 GCTACATGGGCGTTATCTATTTCAC 60.107 44.000 0.00 0.00 0.00 3.18
3552 4121 4.994852 GCTACATGGGCGTTATCTATTTCA 59.005 41.667 0.00 0.00 0.00 2.69
3553 4122 4.994852 TGCTACATGGGCGTTATCTATTTC 59.005 41.667 0.00 0.00 0.00 2.17
3554 4123 4.755123 GTGCTACATGGGCGTTATCTATTT 59.245 41.667 0.00 0.00 0.00 1.40
3555 4124 4.040461 AGTGCTACATGGGCGTTATCTATT 59.960 41.667 0.00 0.00 0.00 1.73
3556 4125 3.578716 AGTGCTACATGGGCGTTATCTAT 59.421 43.478 0.00 0.00 0.00 1.98
3557 4126 2.963101 AGTGCTACATGGGCGTTATCTA 59.037 45.455 0.00 0.00 0.00 1.98
3558 4127 1.762957 AGTGCTACATGGGCGTTATCT 59.237 47.619 0.00 0.00 0.00 1.98
3559 4128 2.240493 AGTGCTACATGGGCGTTATC 57.760 50.000 0.00 0.00 0.00 1.75
3560 4129 5.477607 TTATAGTGCTACATGGGCGTTAT 57.522 39.130 0.00 6.07 0.00 1.89
3561 4130 4.940905 TTATAGTGCTACATGGGCGTTA 57.059 40.909 0.00 0.00 0.00 3.18
3562 4131 3.830744 TTATAGTGCTACATGGGCGTT 57.169 42.857 0.00 0.00 0.00 4.84
3563 4132 3.830744 TTTATAGTGCTACATGGGCGT 57.169 42.857 0.00 0.00 0.00 5.68
3564 4133 4.024048 CCTTTTTATAGTGCTACATGGGCG 60.024 45.833 0.00 0.00 0.00 6.13
3565 4134 4.261614 GCCTTTTTATAGTGCTACATGGGC 60.262 45.833 0.00 1.45 0.00 5.36
3566 4135 4.887071 TGCCTTTTTATAGTGCTACATGGG 59.113 41.667 0.00 0.00 0.00 4.00
3567 4136 6.441274 CATGCCTTTTTATAGTGCTACATGG 58.559 40.000 0.00 0.00 0.00 3.66
3568 4137 6.441274 CCATGCCTTTTTATAGTGCTACATG 58.559 40.000 0.00 0.00 0.00 3.21
3569 4138 5.010012 GCCATGCCTTTTTATAGTGCTACAT 59.990 40.000 0.00 0.00 0.00 2.29
3570 4139 4.338118 GCCATGCCTTTTTATAGTGCTACA 59.662 41.667 0.00 0.00 0.00 2.74
3571 4140 4.338118 TGCCATGCCTTTTTATAGTGCTAC 59.662 41.667 0.00 0.00 0.00 3.58
3572 4141 4.531854 TGCCATGCCTTTTTATAGTGCTA 58.468 39.130 0.00 0.00 0.00 3.49
3573 4142 3.364549 TGCCATGCCTTTTTATAGTGCT 58.635 40.909 0.00 0.00 0.00 4.40
3574 4143 3.799281 TGCCATGCCTTTTTATAGTGC 57.201 42.857 0.00 0.00 0.00 4.40
3613 4182 3.375782 GCACATGGCAACTCTCTTTTT 57.624 42.857 0.00 0.00 43.97 1.94
3632 4201 3.830434 TGCCCTAGCGTGCTTATGAGC 62.830 57.143 1.78 1.78 45.75 4.26
3633 4202 0.104855 TGCCCTAGCGTGCTTATGAG 59.895 55.000 0.00 0.00 44.31 2.90
3634 4203 0.104855 CTGCCCTAGCGTGCTTATGA 59.895 55.000 0.00 0.00 44.31 2.15
3635 4204 0.179073 ACTGCCCTAGCGTGCTTATG 60.179 55.000 0.00 0.00 44.31 1.90
3636 4205 0.541863 AACTGCCCTAGCGTGCTTAT 59.458 50.000 0.00 0.00 44.31 1.73
3637 4206 0.391130 CAACTGCCCTAGCGTGCTTA 60.391 55.000 0.00 0.00 44.31 3.09
3638 4207 1.672356 CAACTGCCCTAGCGTGCTT 60.672 57.895 0.00 0.00 44.31 3.91
3639 4208 2.046892 CAACTGCCCTAGCGTGCT 60.047 61.111 0.00 0.00 44.31 4.40
3640 4209 3.804193 GCAACTGCCCTAGCGTGC 61.804 66.667 0.00 0.00 44.31 5.34
3650 4219 4.216257 TCTTTCTCTTTACATGGCAACTGC 59.784 41.667 0.00 0.00 41.14 4.40
3651 4220 5.471456 ACTCTTTCTCTTTACATGGCAACTG 59.529 40.000 0.00 0.00 37.61 3.16
3652 4221 5.625150 ACTCTTTCTCTTTACATGGCAACT 58.375 37.500 0.00 0.00 37.61 3.16
3653 4222 5.948992 ACTCTTTCTCTTTACATGGCAAC 57.051 39.130 0.00 0.00 0.00 4.17
3654 4223 5.278463 GCAACTCTTTCTCTTTACATGGCAA 60.278 40.000 0.00 0.00 0.00 4.52
3655 4224 4.216257 GCAACTCTTTCTCTTTACATGGCA 59.784 41.667 0.00 0.00 0.00 4.92
3656 4225 4.379918 GGCAACTCTTTCTCTTTACATGGC 60.380 45.833 0.00 0.00 0.00 4.40
3657 4226 4.761739 TGGCAACTCTTTCTCTTTACATGG 59.238 41.667 0.00 0.00 37.61 3.66
3658 4227 5.947228 TGGCAACTCTTTCTCTTTACATG 57.053 39.130 0.00 0.00 37.61 3.21
3659 4228 6.373774 CAGATGGCAACTCTTTCTCTTTACAT 59.626 38.462 0.00 0.00 37.61 2.29
3660 4229 5.702670 CAGATGGCAACTCTTTCTCTTTACA 59.297 40.000 0.00 0.00 37.61 2.41
3661 4230 5.391416 GCAGATGGCAACTCTTTCTCTTTAC 60.391 44.000 0.00 0.00 43.97 2.01
3662 4231 4.697352 GCAGATGGCAACTCTTTCTCTTTA 59.303 41.667 0.00 0.00 43.97 1.85
3663 4232 3.505293 GCAGATGGCAACTCTTTCTCTTT 59.495 43.478 0.00 0.00 43.97 2.52
3664 4233 3.080319 GCAGATGGCAACTCTTTCTCTT 58.920 45.455 0.00 0.00 43.97 2.85
3665 4234 2.709213 GCAGATGGCAACTCTTTCTCT 58.291 47.619 0.00 0.00 43.97 3.10
3674 4243 4.867113 GTGCACGTAAGCAGATGGCAAC 62.867 54.545 0.00 0.00 46.69 4.17
3675 4244 2.803937 GTGCACGTAAGCAGATGGCAA 61.804 52.381 0.00 0.00 46.69 4.52
3676 4245 1.298157 GTGCACGTAAGCAGATGGCA 61.298 55.000 0.00 0.00 46.69 4.92
3677 4246 1.425428 GTGCACGTAAGCAGATGGC 59.575 57.895 0.00 0.00 46.69 4.40
3678 4247 1.709760 CGTGCACGTAAGCAGATGG 59.290 57.895 30.50 0.00 46.69 3.51
3679 4248 1.059369 GCGTGCACGTAAGCAGATG 59.941 57.895 36.80 8.83 46.69 2.90
3680 4249 0.172578 TAGCGTGCACGTAAGCAGAT 59.827 50.000 36.80 16.60 46.69 2.90
3681 4250 0.456142 CTAGCGTGCACGTAAGCAGA 60.456 55.000 36.80 15.35 46.69 4.26
3682 4251 1.413767 CCTAGCGTGCACGTAAGCAG 61.414 60.000 36.80 24.69 46.69 4.24
3683 4252 1.445410 CCTAGCGTGCACGTAAGCA 60.445 57.895 36.80 18.08 43.35 3.91
3684 4253 2.165301 CCCTAGCGTGCACGTAAGC 61.165 63.158 36.80 22.10 45.62 3.09
3685 4254 2.165301 GCCCTAGCGTGCACGTAAG 61.165 63.158 36.80 30.81 42.22 2.34
3686 4255 2.125832 GCCCTAGCGTGCACGTAA 60.126 61.111 36.80 24.68 42.22 3.18
3687 4256 3.350909 CTGCCCTAGCGTGCACGTA 62.351 63.158 36.80 25.57 44.31 3.57
3688 4257 4.742201 CTGCCCTAGCGTGCACGT 62.742 66.667 36.80 25.81 44.31 4.49
3689 4258 4.742201 ACTGCCCTAGCGTGCACG 62.742 66.667 34.01 34.01 44.31 5.34
3690 4259 2.358737 AACTGCCCTAGCGTGCAC 60.359 61.111 6.82 6.82 44.31 4.57
3691 4260 2.358615 CAACTGCCCTAGCGTGCA 60.359 61.111 0.00 0.00 44.31 4.57
3692 4261 3.804193 GCAACTGCCCTAGCGTGC 61.804 66.667 0.00 0.00 44.31 5.34
3702 4271 1.501741 CATGGTACGTGGCAACTGC 59.498 57.895 0.00 0.00 41.14 4.40
3703 4272 1.233950 TGCATGGTACGTGGCAACTG 61.234 55.000 0.00 0.00 32.54 3.16
3704 4273 0.536233 TTGCATGGTACGTGGCAACT 60.536 50.000 11.22 0.00 40.94 3.16
3705 4274 0.312416 TTTGCATGGTACGTGGCAAC 59.688 50.000 13.91 0.00 44.99 4.17
3706 4275 1.032794 TTTTGCATGGTACGTGGCAA 58.967 45.000 11.22 11.22 43.79 4.52
3707 4276 1.032794 TTTTTGCATGGTACGTGGCA 58.967 45.000 0.00 0.00 0.00 4.92
3708 4277 1.269309 TGTTTTTGCATGGTACGTGGC 60.269 47.619 0.00 0.00 0.00 5.01
3709 4278 2.223595 TGTGTTTTTGCATGGTACGTGG 60.224 45.455 0.00 0.00 0.00 4.94
3710 4279 3.071786 TGTGTTTTTGCATGGTACGTG 57.928 42.857 0.00 0.00 0.00 4.49
3711 4280 3.637432 CATGTGTTTTTGCATGGTACGT 58.363 40.909 0.00 0.00 38.90 3.57
3717 4286 2.873472 AGTTGCCATGTGTTTTTGCATG 59.127 40.909 0.00 0.00 41.37 4.06
3718 4287 3.132925 GAGTTGCCATGTGTTTTTGCAT 58.867 40.909 0.00 0.00 0.00 3.96
3719 4288 2.548875 GAGTTGCCATGTGTTTTTGCA 58.451 42.857 0.00 0.00 0.00 4.08
3720 4289 1.522258 CGAGTTGCCATGTGTTTTTGC 59.478 47.619 0.00 0.00 0.00 3.68
3721 4290 2.126467 CCGAGTTGCCATGTGTTTTTG 58.874 47.619 0.00 0.00 0.00 2.44
3722 4291 1.068434 CCCGAGTTGCCATGTGTTTTT 59.932 47.619 0.00 0.00 0.00 1.94
3723 4292 0.673437 CCCGAGTTGCCATGTGTTTT 59.327 50.000 0.00 0.00 0.00 2.43
3724 4293 0.467290 ACCCGAGTTGCCATGTGTTT 60.467 50.000 0.00 0.00 0.00 2.83
3725 4294 0.398696 TACCCGAGTTGCCATGTGTT 59.601 50.000 0.00 0.00 0.00 3.32
3726 4295 0.398696 TTACCCGAGTTGCCATGTGT 59.601 50.000 0.00 0.00 0.00 3.72
3727 4296 1.529226 TTTACCCGAGTTGCCATGTG 58.471 50.000 0.00 0.00 0.00 3.21
3728 4297 2.159382 CTTTTACCCGAGTTGCCATGT 58.841 47.619 0.00 0.00 0.00 3.21
3729 4298 2.420022 CTCTTTTACCCGAGTTGCCATG 59.580 50.000 0.00 0.00 0.00 3.66
3730 4299 2.304761 TCTCTTTTACCCGAGTTGCCAT 59.695 45.455 0.00 0.00 0.00 4.40
3731 4300 1.695242 TCTCTTTTACCCGAGTTGCCA 59.305 47.619 0.00 0.00 0.00 4.92
3732 4301 2.289506 ACTCTCTTTTACCCGAGTTGCC 60.290 50.000 0.00 0.00 33.21 4.52
3733 4302 3.041508 ACTCTCTTTTACCCGAGTTGC 57.958 47.619 0.00 0.00 33.21 4.17
3735 4304 3.400255 GCAACTCTCTTTTACCCGAGTT 58.600 45.455 0.00 0.00 44.86 3.01
3736 4305 2.289506 GGCAACTCTCTTTTACCCGAGT 60.290 50.000 0.00 0.00 38.29 4.18
3737 4306 2.289444 TGGCAACTCTCTTTTACCCGAG 60.289 50.000 0.00 0.00 37.61 4.63
3738 4307 1.695242 TGGCAACTCTCTTTTACCCGA 59.305 47.619 0.00 0.00 37.61 5.14
3739 4308 2.178912 TGGCAACTCTCTTTTACCCG 57.821 50.000 0.00 0.00 37.61 5.28
3740 4309 3.691609 CAGATGGCAACTCTCTTTTACCC 59.308 47.826 0.00 0.00 37.61 3.69
3741 4310 3.127721 GCAGATGGCAACTCTCTTTTACC 59.872 47.826 0.00 0.00 43.97 2.85
3742 4311 4.348198 GCAGATGGCAACTCTCTTTTAC 57.652 45.455 0.00 0.00 43.97 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.