Multiple sequence alignment - TraesCS7D01G290800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G290800 | chr7D | 100.000 | 4998 | 0 | 0 | 1 | 4998 | 345582000 | 345577003 | 0.000000e+00 | 9230.0 |
1 | TraesCS7D01G290800 | chr7B | 97.483 | 1510 | 30 | 6 | 2816 | 4319 | 277651869 | 277653376 | 0.000000e+00 | 2571.0 |
2 | TraesCS7D01G290800 | chr7B | 97.286 | 1400 | 25 | 7 | 1326 | 2722 | 277650481 | 277651870 | 0.000000e+00 | 2362.0 |
3 | TraesCS7D01G290800 | chr7B | 91.489 | 1363 | 63 | 20 | 1 | 1338 | 277649130 | 277650464 | 0.000000e+00 | 1825.0 |
4 | TraesCS7D01G290800 | chr7B | 97.115 | 104 | 3 | 0 | 2714 | 2817 | 159510595 | 159510698 | 5.140000e-40 | 176.0 |
5 | TraesCS7D01G290800 | chr7B | 96.154 | 104 | 4 | 0 | 2721 | 2824 | 706811142 | 706811039 | 2.390000e-38 | 171.0 |
6 | TraesCS7D01G290800 | chr7A | 98.385 | 1424 | 16 | 4 | 2816 | 4236 | 354431214 | 354429795 | 0.000000e+00 | 2495.0 |
7 | TraesCS7D01G290800 | chr7A | 96.731 | 1407 | 28 | 8 | 1321 | 2722 | 354432606 | 354431213 | 0.000000e+00 | 2327.0 |
8 | TraesCS7D01G290800 | chr7A | 97.484 | 636 | 10 | 5 | 699 | 1330 | 354433260 | 354432627 | 0.000000e+00 | 1081.0 |
9 | TraesCS7D01G290800 | chr7A | 90.264 | 719 | 41 | 9 | 1 | 699 | 354434951 | 354434242 | 0.000000e+00 | 913.0 |
10 | TraesCS7D01G290800 | chr7A | 90.996 | 522 | 37 | 5 | 4317 | 4830 | 580659091 | 580659610 | 0.000000e+00 | 695.0 |
11 | TraesCS7D01G290800 | chr7A | 91.860 | 86 | 5 | 1 | 4239 | 4322 | 354429507 | 354429422 | 8.790000e-23 | 119.0 |
12 | TraesCS7D01G290800 | chr3D | 88.547 | 716 | 39 | 9 | 4324 | 4998 | 499599031 | 499598318 | 0.000000e+00 | 828.0 |
13 | TraesCS7D01G290800 | chr3D | 88.272 | 486 | 24 | 5 | 4543 | 4996 | 225358729 | 225358245 | 7.310000e-153 | 551.0 |
14 | TraesCS7D01G290800 | chr3B | 87.849 | 716 | 42 | 16 | 4322 | 4998 | 660333556 | 660332847 | 0.000000e+00 | 798.0 |
15 | TraesCS7D01G290800 | chr3B | 96.262 | 107 | 3 | 1 | 2716 | 2821 | 806367809 | 806367703 | 1.850000e-39 | 174.0 |
16 | TraesCS7D01G290800 | chr3B | 95.283 | 106 | 5 | 0 | 2715 | 2820 | 561029416 | 561029521 | 8.600000e-38 | 169.0 |
17 | TraesCS7D01G290800 | chr5D | 87.101 | 721 | 48 | 11 | 4319 | 4998 | 117352497 | 117351781 | 0.000000e+00 | 774.0 |
18 | TraesCS7D01G290800 | chr4D | 87.101 | 721 | 46 | 14 | 4319 | 4998 | 25180654 | 25179940 | 0.000000e+00 | 773.0 |
19 | TraesCS7D01G290800 | chr4D | 78.599 | 1042 | 223 | 0 | 2940 | 3981 | 478765 | 479806 | 0.000000e+00 | 689.0 |
20 | TraesCS7D01G290800 | chr4D | 89.529 | 191 | 16 | 3 | 2490 | 2677 | 362791984 | 362792173 | 6.470000e-59 | 239.0 |
21 | TraesCS7D01G290800 | chr4D | 94.231 | 104 | 6 | 0 | 2721 | 2824 | 109074971 | 109074868 | 5.180000e-35 | 159.0 |
22 | TraesCS7D01G290800 | chr6D | 86.676 | 713 | 52 | 10 | 4319 | 4991 | 158871096 | 158871805 | 0.000000e+00 | 750.0 |
23 | TraesCS7D01G290800 | chr5A | 88.604 | 623 | 47 | 8 | 4320 | 4920 | 262230977 | 262231597 | 0.000000e+00 | 736.0 |
24 | TraesCS7D01G290800 | chr5A | 88.442 | 199 | 17 | 6 | 2489 | 2683 | 291594550 | 291594746 | 8.360000e-58 | 235.0 |
25 | TraesCS7D01G290800 | chr4B | 88.387 | 620 | 49 | 8 | 4322 | 4920 | 660587122 | 660587739 | 0.000000e+00 | 725.0 |
26 | TraesCS7D01G290800 | chr4B | 78.332 | 1043 | 224 | 2 | 2940 | 3981 | 1322625 | 1321584 | 0.000000e+00 | 673.0 |
27 | TraesCS7D01G290800 | chr2B | 85.814 | 719 | 61 | 9 | 4320 | 4998 | 361568781 | 361568064 | 0.000000e+00 | 725.0 |
28 | TraesCS7D01G290800 | chr4A | 78.599 | 1042 | 223 | 0 | 2940 | 3981 | 210782 | 211823 | 0.000000e+00 | 689.0 |
29 | TraesCS7D01G290800 | chr4A | 89.894 | 188 | 15 | 4 | 2493 | 2677 | 457823951 | 457823765 | 6.470000e-59 | 239.0 |
30 | TraesCS7D01G290800 | chr1D | 88.548 | 489 | 40 | 6 | 4446 | 4920 | 390426145 | 390426631 | 3.350000e-161 | 579.0 |
31 | TraesCS7D01G290800 | chr1B | 81.970 | 660 | 85 | 7 | 4371 | 4998 | 262535114 | 262535771 | 3.430000e-146 | 529.0 |
32 | TraesCS7D01G290800 | chr1A | 84.118 | 340 | 21 | 7 | 4691 | 4998 | 253288225 | 253288563 | 1.050000e-76 | 298.0 |
33 | TraesCS7D01G290800 | chr1A | 90.761 | 184 | 14 | 3 | 2499 | 2679 | 7949504 | 7949687 | 5.000000e-60 | 243.0 |
34 | TraesCS7D01G290800 | chr1A | 88.945 | 199 | 13 | 8 | 2490 | 2684 | 581544080 | 581543887 | 2.330000e-58 | 237.0 |
35 | TraesCS7D01G290800 | chr1A | 98.000 | 100 | 2 | 0 | 2721 | 2820 | 435510126 | 435510027 | 1.850000e-39 | 174.0 |
36 | TraesCS7D01G290800 | chrUn | 91.160 | 181 | 14 | 1 | 2499 | 2677 | 30689240 | 30689420 | 1.390000e-60 | 244.0 |
37 | TraesCS7D01G290800 | chr6A | 87.793 | 213 | 17 | 9 | 2484 | 2688 | 4043500 | 4043711 | 1.800000e-59 | 241.0 |
38 | TraesCS7D01G290800 | chr6A | 97.468 | 79 | 2 | 0 | 4918 | 4996 | 20546695 | 20546617 | 8.730000e-28 | 135.0 |
39 | TraesCS7D01G290800 | chr2A | 97.115 | 104 | 3 | 0 | 2721 | 2824 | 13287305 | 13287408 | 5.140000e-40 | 176.0 |
40 | TraesCS7D01G290800 | chr2A | 98.000 | 100 | 2 | 0 | 2721 | 2820 | 704122592 | 704122493 | 1.850000e-39 | 174.0 |
41 | TraesCS7D01G290800 | chr2D | 95.413 | 109 | 4 | 1 | 2721 | 2828 | 107204080 | 107204188 | 6.650000e-39 | 172.0 |
42 | TraesCS7D01G290800 | chr2D | 88.312 | 77 | 9 | 0 | 4922 | 4998 | 352188975 | 352188899 | 5.330000e-15 | 93.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G290800 | chr7D | 345577003 | 345582000 | 4997 | True | 9230.000000 | 9230 | 100.000000 | 1 | 4998 | 1 | chr7D.!!$R1 | 4997 |
1 | TraesCS7D01G290800 | chr7B | 277649130 | 277653376 | 4246 | False | 2252.666667 | 2571 | 95.419333 | 1 | 4319 | 3 | chr7B.!!$F2 | 4318 |
2 | TraesCS7D01G290800 | chr7A | 354429422 | 354434951 | 5529 | True | 1387.000000 | 2495 | 94.944800 | 1 | 4322 | 5 | chr7A.!!$R1 | 4321 |
3 | TraesCS7D01G290800 | chr7A | 580659091 | 580659610 | 519 | False | 695.000000 | 695 | 90.996000 | 4317 | 4830 | 1 | chr7A.!!$F1 | 513 |
4 | TraesCS7D01G290800 | chr3D | 499598318 | 499599031 | 713 | True | 828.000000 | 828 | 88.547000 | 4324 | 4998 | 1 | chr3D.!!$R2 | 674 |
5 | TraesCS7D01G290800 | chr3B | 660332847 | 660333556 | 709 | True | 798.000000 | 798 | 87.849000 | 4322 | 4998 | 1 | chr3B.!!$R1 | 676 |
6 | TraesCS7D01G290800 | chr5D | 117351781 | 117352497 | 716 | True | 774.000000 | 774 | 87.101000 | 4319 | 4998 | 1 | chr5D.!!$R1 | 679 |
7 | TraesCS7D01G290800 | chr4D | 25179940 | 25180654 | 714 | True | 773.000000 | 773 | 87.101000 | 4319 | 4998 | 1 | chr4D.!!$R1 | 679 |
8 | TraesCS7D01G290800 | chr4D | 478765 | 479806 | 1041 | False | 689.000000 | 689 | 78.599000 | 2940 | 3981 | 1 | chr4D.!!$F1 | 1041 |
9 | TraesCS7D01G290800 | chr6D | 158871096 | 158871805 | 709 | False | 750.000000 | 750 | 86.676000 | 4319 | 4991 | 1 | chr6D.!!$F1 | 672 |
10 | TraesCS7D01G290800 | chr5A | 262230977 | 262231597 | 620 | False | 736.000000 | 736 | 88.604000 | 4320 | 4920 | 1 | chr5A.!!$F1 | 600 |
11 | TraesCS7D01G290800 | chr4B | 660587122 | 660587739 | 617 | False | 725.000000 | 725 | 88.387000 | 4322 | 4920 | 1 | chr4B.!!$F1 | 598 |
12 | TraesCS7D01G290800 | chr4B | 1321584 | 1322625 | 1041 | True | 673.000000 | 673 | 78.332000 | 2940 | 3981 | 1 | chr4B.!!$R1 | 1041 |
13 | TraesCS7D01G290800 | chr2B | 361568064 | 361568781 | 717 | True | 725.000000 | 725 | 85.814000 | 4320 | 4998 | 1 | chr2B.!!$R1 | 678 |
14 | TraesCS7D01G290800 | chr4A | 210782 | 211823 | 1041 | False | 689.000000 | 689 | 78.599000 | 2940 | 3981 | 1 | chr4A.!!$F1 | 1041 |
15 | TraesCS7D01G290800 | chr1B | 262535114 | 262535771 | 657 | False | 529.000000 | 529 | 81.970000 | 4371 | 4998 | 1 | chr1B.!!$F1 | 627 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
133 | 134 | 0.179200 | GCCTTGTAACATTGTCGCGG | 60.179 | 55.000 | 6.13 | 0.0 | 0.0 | 6.46 | F |
334 | 335 | 0.179234 | TGACCTTTGGAGCACGACAA | 59.821 | 50.000 | 0.00 | 0.0 | 0.0 | 3.18 | F |
390 | 400 | 0.904649 | TGCTGCATGCCACTACTAGT | 59.095 | 50.000 | 16.68 | 0.0 | 42.0 | 2.57 | F |
1494 | 2546 | 2.361438 | CCTGGAACCTATCTCGTACCAC | 59.639 | 54.545 | 0.00 | 0.0 | 0.0 | 4.16 | F |
2735 | 3792 | 2.019807 | AAGTTACTCCCTCCGTTCCA | 57.980 | 50.000 | 0.00 | 0.0 | 0.0 | 3.53 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2040 | 3093 | 0.250234 | TAGCTAACCTGTGCAGCCAG | 59.750 | 55.000 | 0.00 | 0.00 | 35.88 | 4.85 | R |
2088 | 3141 | 0.744414 | ACCCGGATGAAATGCAGACG | 60.744 | 55.000 | 0.73 | 0.00 | 32.20 | 4.18 | R |
2134 | 3187 | 3.748048 | CGCCACCATCATCCTAAATAGTG | 59.252 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 | R |
3196 | 4254 | 1.605710 | GCAGATCCATGACCAAATCGG | 59.394 | 52.381 | 0.00 | 0.00 | 42.50 | 4.18 | R |
4626 | 5984 | 1.539388 | CTAACATTGGCGCAAAGGACA | 59.461 | 47.619 | 17.41 | 1.72 | 0.00 | 4.02 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
107 | 108 | 2.910360 | CCATCTCCGTGGCCATCA | 59.090 | 61.111 | 9.72 | 0.00 | 31.43 | 3.07 |
122 | 123 | 2.355197 | CCATCACATCACGCCTTGTAA | 58.645 | 47.619 | 0.00 | 0.00 | 0.00 | 2.41 |
133 | 134 | 0.179200 | GCCTTGTAACATTGTCGCGG | 60.179 | 55.000 | 6.13 | 0.00 | 0.00 | 6.46 |
136 | 137 | 1.902716 | TTGTAACATTGTCGCGGCCG | 61.903 | 55.000 | 24.05 | 24.05 | 0.00 | 6.13 |
188 | 189 | 0.738389 | CGTTGAAGCAGTTGGGTGTT | 59.262 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
288 | 289 | 3.831112 | CATCGTATGAGATGCGTCAGAT | 58.169 | 45.455 | 8.99 | 1.90 | 41.09 | 2.90 |
329 | 330 | 0.674895 | ATCGCTGACCTTTGGAGCAC | 60.675 | 55.000 | 0.00 | 0.00 | 32.70 | 4.40 |
330 | 331 | 2.671177 | CGCTGACCTTTGGAGCACG | 61.671 | 63.158 | 0.00 | 0.00 | 32.70 | 5.34 |
331 | 332 | 1.301716 | GCTGACCTTTGGAGCACGA | 60.302 | 57.895 | 0.00 | 0.00 | 32.70 | 4.35 |
333 | 334 | 0.249868 | CTGACCTTTGGAGCACGACA | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
334 | 335 | 0.179234 | TGACCTTTGGAGCACGACAA | 59.821 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
354 | 364 | 5.460646 | ACAATGACGGCTGTTAATTTTGAG | 58.539 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
390 | 400 | 0.904649 | TGCTGCATGCCACTACTAGT | 59.095 | 50.000 | 16.68 | 0.00 | 42.00 | 2.57 |
404 | 414 | 2.656560 | ACTAGTTGAGGACGCATGTC | 57.343 | 50.000 | 0.00 | 0.00 | 44.72 | 3.06 |
480 | 495 | 3.556775 | TGAAAAAGGACGAGTTGTAACGG | 59.443 | 43.478 | 0.00 | 0.00 | 0.00 | 4.44 |
666 | 697 | 9.910267 | TTTTGAGGGGTAGGTATTTTAGATTAC | 57.090 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
667 | 698 | 8.865244 | TTGAGGGGTAGGTATTTTAGATTACT | 57.135 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
813 | 1826 | 4.845811 | ACCAGTAGTGAGCGGAGT | 57.154 | 55.556 | 0.00 | 0.00 | 0.00 | 3.85 |
1232 | 2254 | 3.621558 | GTTGAGATCCGATCCCCTTTTT | 58.378 | 45.455 | 4.67 | 0.00 | 0.00 | 1.94 |
1377 | 2429 | 8.757982 | ACAGATTGCTAGATCCATGTTAAATT | 57.242 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
1494 | 2546 | 2.361438 | CCTGGAACCTATCTCGTACCAC | 59.639 | 54.545 | 0.00 | 0.00 | 0.00 | 4.16 |
1638 | 2690 | 7.112779 | CCTCCTTCATACCAGTTGATTACTTT | 58.887 | 38.462 | 0.00 | 0.00 | 33.85 | 2.66 |
1949 | 3002 | 5.985530 | ACACATGGACATACATCATCTTACG | 59.014 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2040 | 3093 | 5.847304 | AGTTGGAAAAGGAAGCTGAAATTC | 58.153 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
2088 | 3141 | 9.521503 | GAACTTCTATCTTTTTATTTGCCCATC | 57.478 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
2134 | 3187 | 3.565905 | AATTGCTTACACTTGCTGCTC | 57.434 | 42.857 | 0.00 | 0.00 | 0.00 | 4.26 |
2720 | 3777 | 5.163195 | ACACATCCTTCTACCTCACAAAGTT | 60.163 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2721 | 3778 | 6.042781 | ACACATCCTTCTACCTCACAAAGTTA | 59.957 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
2722 | 3779 | 6.369065 | CACATCCTTCTACCTCACAAAGTTAC | 59.631 | 42.308 | 0.00 | 0.00 | 0.00 | 2.50 |
2723 | 3780 | 6.270231 | ACATCCTTCTACCTCACAAAGTTACT | 59.730 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
2724 | 3781 | 6.342338 | TCCTTCTACCTCACAAAGTTACTC | 57.658 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
2725 | 3782 | 5.245526 | TCCTTCTACCTCACAAAGTTACTCC | 59.754 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2726 | 3783 | 5.479124 | TTCTACCTCACAAAGTTACTCCC | 57.521 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2727 | 3784 | 4.748701 | TCTACCTCACAAAGTTACTCCCT | 58.251 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
2728 | 3785 | 4.771054 | TCTACCTCACAAAGTTACTCCCTC | 59.229 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2729 | 3786 | 2.638363 | ACCTCACAAAGTTACTCCCTCC | 59.362 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2730 | 3787 | 2.353803 | CCTCACAAAGTTACTCCCTCCG | 60.354 | 54.545 | 0.00 | 0.00 | 0.00 | 4.63 |
2731 | 3788 | 2.299297 | CTCACAAAGTTACTCCCTCCGT | 59.701 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2732 | 3789 | 2.701951 | TCACAAAGTTACTCCCTCCGTT | 59.298 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
2733 | 3790 | 3.064931 | CACAAAGTTACTCCCTCCGTTC | 58.935 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2734 | 3791 | 2.038164 | ACAAAGTTACTCCCTCCGTTCC | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2735 | 3792 | 2.019807 | AAGTTACTCCCTCCGTTCCA | 57.980 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2736 | 3793 | 2.019807 | AGTTACTCCCTCCGTTCCAA | 57.980 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2737 | 3794 | 2.332117 | AGTTACTCCCTCCGTTCCAAA | 58.668 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
2738 | 3795 | 2.707257 | AGTTACTCCCTCCGTTCCAAAA | 59.293 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
2739 | 3796 | 3.329814 | AGTTACTCCCTCCGTTCCAAAAT | 59.670 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
2740 | 3797 | 4.533311 | AGTTACTCCCTCCGTTCCAAAATA | 59.467 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
2741 | 3798 | 3.629142 | ACTCCCTCCGTTCCAAAATAG | 57.371 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
2742 | 3799 | 3.178865 | ACTCCCTCCGTTCCAAAATAGA | 58.821 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
2743 | 3800 | 3.780850 | ACTCCCTCCGTTCCAAAATAGAT | 59.219 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
2744 | 3801 | 4.130118 | CTCCCTCCGTTCCAAAATAGATG | 58.870 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
2745 | 3802 | 3.778075 | TCCCTCCGTTCCAAAATAGATGA | 59.222 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
2746 | 3803 | 3.877508 | CCCTCCGTTCCAAAATAGATGAC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
2747 | 3804 | 4.384208 | CCCTCCGTTCCAAAATAGATGACT | 60.384 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
2748 | 3805 | 4.811557 | CCTCCGTTCCAAAATAGATGACTC | 59.188 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
2749 | 3806 | 5.414789 | TCCGTTCCAAAATAGATGACTCA | 57.585 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
2750 | 3807 | 5.800296 | TCCGTTCCAAAATAGATGACTCAA | 58.200 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
2751 | 3808 | 5.642063 | TCCGTTCCAAAATAGATGACTCAAC | 59.358 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2752 | 3809 | 5.643777 | CCGTTCCAAAATAGATGACTCAACT | 59.356 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2753 | 3810 | 6.149474 | CCGTTCCAAAATAGATGACTCAACTT | 59.851 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
2754 | 3811 | 7.308589 | CCGTTCCAAAATAGATGACTCAACTTT | 60.309 | 37.037 | 0.00 | 0.00 | 0.00 | 2.66 |
2755 | 3812 | 7.535258 | CGTTCCAAAATAGATGACTCAACTTTG | 59.465 | 37.037 | 0.00 | 0.00 | 0.00 | 2.77 |
2756 | 3813 | 8.352942 | GTTCCAAAATAGATGACTCAACTTTGT | 58.647 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2757 | 3814 | 9.567776 | TTCCAAAATAGATGACTCAACTTTGTA | 57.432 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
2758 | 3815 | 8.999431 | TCCAAAATAGATGACTCAACTTTGTAC | 58.001 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
2759 | 3816 | 9.003658 | CCAAAATAGATGACTCAACTTTGTACT | 57.996 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
2786 | 3843 | 8.502105 | ACTTTAGTACAAAGTTAGTGCAAAGT | 57.498 | 30.769 | 14.04 | 0.00 | 37.18 | 2.66 |
2787 | 3844 | 8.953313 | ACTTTAGTACAAAGTTAGTGCAAAGTT | 58.047 | 29.630 | 14.04 | 0.00 | 37.18 | 2.66 |
2788 | 3845 | 9.221775 | CTTTAGTACAAAGTTAGTGCAAAGTTG | 57.778 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2789 | 3846 | 6.131544 | AGTACAAAGTTAGTGCAAAGTTGG | 57.868 | 37.500 | 0.00 | 0.00 | 0.00 | 3.77 |
2790 | 3847 | 4.385358 | ACAAAGTTAGTGCAAAGTTGGG | 57.615 | 40.909 | 0.00 | 0.00 | 0.00 | 4.12 |
2791 | 3848 | 3.767131 | ACAAAGTTAGTGCAAAGTTGGGT | 59.233 | 39.130 | 0.00 | 0.00 | 0.00 | 4.51 |
2792 | 3849 | 4.142249 | ACAAAGTTAGTGCAAAGTTGGGTC | 60.142 | 41.667 | 0.00 | 0.00 | 0.00 | 4.46 |
2793 | 3850 | 3.290948 | AGTTAGTGCAAAGTTGGGTCA | 57.709 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
2794 | 3851 | 3.832527 | AGTTAGTGCAAAGTTGGGTCAT | 58.167 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
2795 | 3852 | 3.821033 | AGTTAGTGCAAAGTTGGGTCATC | 59.179 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
2796 | 3853 | 2.664402 | AGTGCAAAGTTGGGTCATCT | 57.336 | 45.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2797 | 3854 | 3.788227 | AGTGCAAAGTTGGGTCATCTA | 57.212 | 42.857 | 0.00 | 0.00 | 0.00 | 1.98 |
2798 | 3855 | 4.307032 | AGTGCAAAGTTGGGTCATCTAT | 57.693 | 40.909 | 0.00 | 0.00 | 0.00 | 1.98 |
2799 | 3856 | 4.666512 | AGTGCAAAGTTGGGTCATCTATT | 58.333 | 39.130 | 0.00 | 0.00 | 0.00 | 1.73 |
2800 | 3857 | 5.079643 | AGTGCAAAGTTGGGTCATCTATTT | 58.920 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
2801 | 3858 | 5.539955 | AGTGCAAAGTTGGGTCATCTATTTT | 59.460 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2802 | 3859 | 5.634859 | GTGCAAAGTTGGGTCATCTATTTTG | 59.365 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2803 | 3860 | 5.170748 | GCAAAGTTGGGTCATCTATTTTGG | 58.829 | 41.667 | 0.00 | 0.00 | 0.00 | 3.28 |
2804 | 3861 | 5.047377 | GCAAAGTTGGGTCATCTATTTTGGA | 60.047 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2805 | 3862 | 6.518200 | GCAAAGTTGGGTCATCTATTTTGGAA | 60.518 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
2806 | 3863 | 6.590234 | AAGTTGGGTCATCTATTTTGGAAC | 57.410 | 37.500 | 0.00 | 0.00 | 0.00 | 3.62 |
2807 | 3864 | 5.640147 | AGTTGGGTCATCTATTTTGGAACA | 58.360 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
2808 | 3865 | 5.711976 | AGTTGGGTCATCTATTTTGGAACAG | 59.288 | 40.000 | 0.00 | 0.00 | 42.39 | 3.16 |
2809 | 3866 | 5.512942 | TGGGTCATCTATTTTGGAACAGA | 57.487 | 39.130 | 0.00 | 0.00 | 42.39 | 3.41 |
2810 | 3867 | 5.500234 | TGGGTCATCTATTTTGGAACAGAG | 58.500 | 41.667 | 0.00 | 0.00 | 42.39 | 3.35 |
2811 | 3868 | 4.884164 | GGGTCATCTATTTTGGAACAGAGG | 59.116 | 45.833 | 0.00 | 0.00 | 42.39 | 3.69 |
2812 | 3869 | 4.884164 | GGTCATCTATTTTGGAACAGAGGG | 59.116 | 45.833 | 0.00 | 0.00 | 42.39 | 4.30 |
2813 | 3870 | 5.339200 | GGTCATCTATTTTGGAACAGAGGGA | 60.339 | 44.000 | 0.00 | 0.00 | 42.39 | 4.20 |
2814 | 3871 | 5.819901 | GTCATCTATTTTGGAACAGAGGGAG | 59.180 | 44.000 | 0.00 | 0.00 | 42.39 | 4.30 |
3196 | 4254 | 6.234177 | AGCTAATATGAAGGAGTACATTGCC | 58.766 | 40.000 | 0.00 | 0.00 | 0.00 | 4.52 |
4100 | 5161 | 7.489160 | TCATTTAGCGTGACAAGTATGAGTAT | 58.511 | 34.615 | 0.00 | 0.00 | 0.00 | 2.12 |
4173 | 5235 | 8.433421 | ACGATCCGTGTTTAATTTCATATCTT | 57.567 | 30.769 | 0.00 | 0.00 | 39.18 | 2.40 |
4201 | 5263 | 4.804868 | TTGTTGATCCATGATGGTTTGG | 57.195 | 40.909 | 11.87 | 0.00 | 39.03 | 3.28 |
4406 | 5763 | 7.381323 | ACAATTTCATTTAAAGGCTCCTCAAG | 58.619 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
4407 | 5764 | 7.015584 | ACAATTTCATTTAAAGGCTCCTCAAGT | 59.984 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
4529 | 5886 | 8.334263 | TCACATGCATAATGAAAACAGTCTTA | 57.666 | 30.769 | 9.77 | 0.00 | 38.72 | 2.10 |
4584 | 5941 | 6.540995 | CCCTCCATCATTCATAGAGTCAATT | 58.459 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
4648 | 6006 | 2.423538 | GTCCTTTGCGCCAATGTTAGAT | 59.576 | 45.455 | 4.18 | 0.00 | 0.00 | 1.98 |
4691 | 6049 | 2.179547 | CCATTAGCACATCCGCGCA | 61.180 | 57.895 | 8.75 | 0.00 | 36.85 | 6.09 |
4696 | 6054 | 0.167908 | TAGCACATCCGCGCAAAAAG | 59.832 | 50.000 | 8.75 | 0.00 | 36.85 | 2.27 |
4765 | 6124 | 1.621814 | AGCATTGCTTTCATTGTGCCT | 59.378 | 42.857 | 5.03 | 0.00 | 33.89 | 4.75 |
4806 | 6165 | 6.489700 | TCAAAGGAAGCATCAACATTGAGTTA | 59.510 | 34.615 | 0.23 | 0.00 | 41.08 | 2.24 |
4817 | 6176 | 9.097257 | CATCAACATTGAGTTAAACAAAACCTT | 57.903 | 29.630 | 0.23 | 0.00 | 41.08 | 3.50 |
4854 | 6217 | 3.014304 | ACTCTCCTTCACATACGCCTA | 57.986 | 47.619 | 0.00 | 0.00 | 0.00 | 3.93 |
4901 | 6277 | 4.161001 | GCAAGGATTCCCATTGAAATCTGT | 59.839 | 41.667 | 8.48 | 0.02 | 36.33 | 3.41 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
6 | 7 | 1.353103 | CCCGCTGTTTCGATGATGC | 59.647 | 57.895 | 0.00 | 0.00 | 0.00 | 3.91 |
107 | 108 | 3.146066 | ACAATGTTACAAGGCGTGATGT | 58.854 | 40.909 | 7.60 | 0.42 | 0.00 | 3.06 |
122 | 123 | 3.722295 | CAACGGCCGCGACAATGT | 61.722 | 61.111 | 28.58 | 0.00 | 0.00 | 2.71 |
133 | 134 | 4.090057 | GGCGACTGCTTCAACGGC | 62.090 | 66.667 | 0.00 | 0.00 | 42.25 | 5.68 |
136 | 137 | 1.461127 | CTACAAGGCGACTGCTTCAAC | 59.539 | 52.381 | 0.00 | 0.00 | 42.68 | 3.18 |
188 | 189 | 1.675310 | CTGGATGGCGGTCTTTGCA | 60.675 | 57.895 | 0.00 | 0.00 | 0.00 | 4.08 |
288 | 289 | 5.001237 | TCGAGTGTTTGTTGTCTACAAGA | 57.999 | 39.130 | 0.00 | 0.00 | 46.81 | 3.02 |
303 | 304 | 0.603569 | AAAGGTCAGCGATCGAGTGT | 59.396 | 50.000 | 21.57 | 0.00 | 0.00 | 3.55 |
329 | 330 | 3.740044 | AATTAACAGCCGTCATTGTCG | 57.260 | 42.857 | 0.00 | 0.00 | 0.00 | 4.35 |
330 | 331 | 5.457140 | TCAAAATTAACAGCCGTCATTGTC | 58.543 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
331 | 332 | 5.009610 | ACTCAAAATTAACAGCCGTCATTGT | 59.990 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
333 | 334 | 5.705609 | ACTCAAAATTAACAGCCGTCATT | 57.294 | 34.783 | 0.00 | 0.00 | 0.00 | 2.57 |
334 | 335 | 5.460646 | CAACTCAAAATTAACAGCCGTCAT | 58.539 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
404 | 414 | 0.863538 | CTCATCGACGACTTCCAGCG | 60.864 | 60.000 | 0.00 | 0.00 | 0.00 | 5.18 |
463 | 474 | 0.320160 | GGCCGTTACAACTCGTCCTT | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
503 | 519 | 3.665675 | GATCAGCCGCCTCGTTGGT | 62.666 | 63.158 | 0.00 | 0.00 | 38.35 | 3.67 |
813 | 1826 | 4.030913 | AGTGCTACTTGTATTGCCTCCTA | 58.969 | 43.478 | 0.00 | 0.00 | 0.00 | 2.94 |
888 | 1902 | 0.031515 | TTCTATTCCCCTCCCAGCGA | 60.032 | 55.000 | 0.00 | 0.00 | 0.00 | 4.93 |
1232 | 2254 | 5.525012 | CGATGGATGAATAGCAACAAGAAGA | 59.475 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
1377 | 2429 | 9.905713 | ATATAAAGAGCCAAGAAATCACAAGTA | 57.094 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
1571 | 2623 | 7.714377 | AGATCAGATATTCGCATTGAAGAACTT | 59.286 | 33.333 | 0.00 | 0.00 | 40.65 | 2.66 |
1949 | 3002 | 1.005340 | CAGAAGCCTCAATCTCACGC | 58.995 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2040 | 3093 | 0.250234 | TAGCTAACCTGTGCAGCCAG | 59.750 | 55.000 | 0.00 | 0.00 | 35.88 | 4.85 |
2088 | 3141 | 0.744414 | ACCCGGATGAAATGCAGACG | 60.744 | 55.000 | 0.73 | 0.00 | 32.20 | 4.18 |
2134 | 3187 | 3.748048 | CGCCACCATCATCCTAAATAGTG | 59.252 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
2446 | 3499 | 5.636121 | TGTTAACGGTAGTCAAGCAATACAG | 59.364 | 40.000 | 0.26 | 0.00 | 0.00 | 2.74 |
2532 | 3589 | 6.314896 | GCTTGATTTAGTCACTTAGATGTGCT | 59.685 | 38.462 | 0.00 | 0.00 | 36.32 | 4.40 |
2573 | 3630 | 9.945904 | TTTGTGTGGGTATTTTCTTTTTACTTT | 57.054 | 25.926 | 0.00 | 0.00 | 0.00 | 2.66 |
2662 | 3719 | 5.985530 | GCCAAAGATTCAGTTTTGCTAAAGT | 59.014 | 36.000 | 0.00 | 0.00 | 33.92 | 2.66 |
2720 | 3777 | 4.355549 | TCTATTTTGGAACGGAGGGAGTA | 58.644 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
2721 | 3778 | 3.178865 | TCTATTTTGGAACGGAGGGAGT | 58.821 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
2722 | 3779 | 3.906720 | TCTATTTTGGAACGGAGGGAG | 57.093 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
2723 | 3780 | 3.778075 | TCATCTATTTTGGAACGGAGGGA | 59.222 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
2724 | 3781 | 3.877508 | GTCATCTATTTTGGAACGGAGGG | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
2725 | 3782 | 4.770795 | AGTCATCTATTTTGGAACGGAGG | 58.229 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2726 | 3783 | 5.419542 | TGAGTCATCTATTTTGGAACGGAG | 58.580 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
2727 | 3784 | 5.414789 | TGAGTCATCTATTTTGGAACGGA | 57.585 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
2728 | 3785 | 5.643777 | AGTTGAGTCATCTATTTTGGAACGG | 59.356 | 40.000 | 1.70 | 0.00 | 0.00 | 4.44 |
2729 | 3786 | 6.727824 | AGTTGAGTCATCTATTTTGGAACG | 57.272 | 37.500 | 1.70 | 0.00 | 0.00 | 3.95 |
2730 | 3787 | 8.352942 | ACAAAGTTGAGTCATCTATTTTGGAAC | 58.647 | 33.333 | 14.35 | 0.00 | 40.00 | 3.62 |
2731 | 3788 | 8.463930 | ACAAAGTTGAGTCATCTATTTTGGAA | 57.536 | 30.769 | 14.35 | 0.00 | 40.00 | 3.53 |
2732 | 3789 | 8.999431 | GTACAAAGTTGAGTCATCTATTTTGGA | 58.001 | 33.333 | 14.35 | 6.88 | 40.00 | 3.53 |
2733 | 3790 | 9.003658 | AGTACAAAGTTGAGTCATCTATTTTGG | 57.996 | 33.333 | 14.35 | 0.00 | 40.00 | 3.28 |
2761 | 3818 | 8.502105 | ACTTTGCACTAACTTTGTACTAAAGT | 57.498 | 30.769 | 14.04 | 14.04 | 41.82 | 2.66 |
2762 | 3819 | 9.221775 | CAACTTTGCACTAACTTTGTACTAAAG | 57.778 | 33.333 | 13.08 | 13.08 | 0.00 | 1.85 |
2763 | 3820 | 8.185505 | CCAACTTTGCACTAACTTTGTACTAAA | 58.814 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
2764 | 3821 | 7.201750 | CCCAACTTTGCACTAACTTTGTACTAA | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
2765 | 3822 | 6.261381 | CCCAACTTTGCACTAACTTTGTACTA | 59.739 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
2766 | 3823 | 5.067283 | CCCAACTTTGCACTAACTTTGTACT | 59.933 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2767 | 3824 | 5.163591 | ACCCAACTTTGCACTAACTTTGTAC | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2768 | 3825 | 4.951094 | ACCCAACTTTGCACTAACTTTGTA | 59.049 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
2769 | 3826 | 3.767131 | ACCCAACTTTGCACTAACTTTGT | 59.233 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
2770 | 3827 | 4.142271 | TGACCCAACTTTGCACTAACTTTG | 60.142 | 41.667 | 0.00 | 0.00 | 0.00 | 2.77 |
2771 | 3828 | 4.020543 | TGACCCAACTTTGCACTAACTTT | 58.979 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
2772 | 3829 | 3.626930 | TGACCCAACTTTGCACTAACTT | 58.373 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
2773 | 3830 | 3.290948 | TGACCCAACTTTGCACTAACT | 57.709 | 42.857 | 0.00 | 0.00 | 0.00 | 2.24 |
2774 | 3831 | 3.821033 | AGATGACCCAACTTTGCACTAAC | 59.179 | 43.478 | 0.00 | 0.00 | 0.00 | 2.34 |
2775 | 3832 | 4.098914 | AGATGACCCAACTTTGCACTAA | 57.901 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
2776 | 3833 | 3.788227 | AGATGACCCAACTTTGCACTA | 57.212 | 42.857 | 0.00 | 0.00 | 0.00 | 2.74 |
2777 | 3834 | 2.664402 | AGATGACCCAACTTTGCACT | 57.336 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2778 | 3835 | 5.391312 | AAATAGATGACCCAACTTTGCAC | 57.609 | 39.130 | 0.00 | 0.00 | 0.00 | 4.57 |
2779 | 3836 | 5.279406 | CCAAAATAGATGACCCAACTTTGCA | 60.279 | 40.000 | 0.00 | 0.00 | 0.00 | 4.08 |
2780 | 3837 | 5.047377 | TCCAAAATAGATGACCCAACTTTGC | 60.047 | 40.000 | 0.00 | 0.00 | 0.00 | 3.68 |
2781 | 3838 | 6.588719 | TCCAAAATAGATGACCCAACTTTG | 57.411 | 37.500 | 0.00 | 0.00 | 0.00 | 2.77 |
2782 | 3839 | 6.553100 | TGTTCCAAAATAGATGACCCAACTTT | 59.447 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
2783 | 3840 | 6.074648 | TGTTCCAAAATAGATGACCCAACTT | 58.925 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2784 | 3841 | 5.640147 | TGTTCCAAAATAGATGACCCAACT | 58.360 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
2785 | 3842 | 5.710099 | TCTGTTCCAAAATAGATGACCCAAC | 59.290 | 40.000 | 0.00 | 0.00 | 28.72 | 3.77 |
2786 | 3843 | 5.886609 | TCTGTTCCAAAATAGATGACCCAA | 58.113 | 37.500 | 0.00 | 0.00 | 28.72 | 4.12 |
2787 | 3844 | 5.500234 | CTCTGTTCCAAAATAGATGACCCA | 58.500 | 41.667 | 0.00 | 0.00 | 32.88 | 4.51 |
2788 | 3845 | 4.884164 | CCTCTGTTCCAAAATAGATGACCC | 59.116 | 45.833 | 0.00 | 0.00 | 32.88 | 4.46 |
2789 | 3846 | 4.884164 | CCCTCTGTTCCAAAATAGATGACC | 59.116 | 45.833 | 0.00 | 0.00 | 32.88 | 4.02 |
2790 | 3847 | 5.745227 | TCCCTCTGTTCCAAAATAGATGAC | 58.255 | 41.667 | 0.00 | 0.00 | 32.88 | 3.06 |
2791 | 3848 | 5.488919 | ACTCCCTCTGTTCCAAAATAGATGA | 59.511 | 40.000 | 0.00 | 0.00 | 32.88 | 2.92 |
2792 | 3849 | 5.749462 | ACTCCCTCTGTTCCAAAATAGATG | 58.251 | 41.667 | 0.00 | 0.00 | 32.88 | 2.90 |
2793 | 3850 | 7.698163 | ATACTCCCTCTGTTCCAAAATAGAT | 57.302 | 36.000 | 0.00 | 0.00 | 32.88 | 1.98 |
2794 | 3851 | 8.651389 | CATATACTCCCTCTGTTCCAAAATAGA | 58.349 | 37.037 | 0.00 | 0.00 | 32.42 | 1.98 |
2795 | 3852 | 7.880195 | CCATATACTCCCTCTGTTCCAAAATAG | 59.120 | 40.741 | 0.00 | 0.00 | 0.00 | 1.73 |
2796 | 3853 | 7.349859 | ACCATATACTCCCTCTGTTCCAAAATA | 59.650 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
2797 | 3854 | 6.160459 | ACCATATACTCCCTCTGTTCCAAAAT | 59.840 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
2798 | 3855 | 5.491078 | ACCATATACTCCCTCTGTTCCAAAA | 59.509 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2799 | 3856 | 5.036916 | ACCATATACTCCCTCTGTTCCAAA | 58.963 | 41.667 | 0.00 | 0.00 | 0.00 | 3.28 |
2800 | 3857 | 4.631234 | ACCATATACTCCCTCTGTTCCAA | 58.369 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
2801 | 3858 | 4.280789 | ACCATATACTCCCTCTGTTCCA | 57.719 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
2802 | 3859 | 5.395611 | AGTACCATATACTCCCTCTGTTCC | 58.604 | 45.833 | 0.00 | 0.00 | 0.00 | 3.62 |
2803 | 3860 | 7.232910 | AGTAGTACCATATACTCCCTCTGTTC | 58.767 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
2804 | 3861 | 7.164233 | AGTAGTACCATATACTCCCTCTGTT | 57.836 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2805 | 3862 | 6.783517 | AGTAGTACCATATACTCCCTCTGT | 57.216 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
2806 | 3863 | 9.835389 | GTATAGTAGTACCATATACTCCCTCTG | 57.165 | 40.741 | 10.41 | 0.00 | 34.21 | 3.35 |
2807 | 3864 | 9.571823 | TGTATAGTAGTACCATATACTCCCTCT | 57.428 | 37.037 | 15.45 | 0.00 | 34.76 | 3.69 |
3196 | 4254 | 1.605710 | GCAGATCCATGACCAAATCGG | 59.394 | 52.381 | 0.00 | 0.00 | 42.50 | 4.18 |
4129 | 5190 | 7.096189 | CGGATCGTCTGGTTATAAAATAGTGTG | 60.096 | 40.741 | 0.00 | 0.00 | 0.00 | 3.82 |
4173 | 5235 | 7.479352 | ACCATCATGGATCAACAATGTTAAA | 57.521 | 32.000 | 11.90 | 0.00 | 40.96 | 1.52 |
4201 | 5263 | 2.080286 | TCTAGAACCGCAGAGCAAAC | 57.920 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
4406 | 5763 | 6.903419 | AGATTTTCTTTGACTTCGGATTGAC | 58.097 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4407 | 5764 | 7.148407 | GCTAGATTTTCTTTGACTTCGGATTGA | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
4529 | 5886 | 2.690778 | GCGGCGGCAACAATCTTCT | 61.691 | 57.895 | 9.78 | 0.00 | 39.62 | 2.85 |
4554 | 5911 | 1.588239 | TGAATGATGGAGGGCAGTCT | 58.412 | 50.000 | 0.00 | 0.00 | 31.06 | 3.24 |
4626 | 5984 | 1.539388 | CTAACATTGGCGCAAAGGACA | 59.461 | 47.619 | 17.41 | 1.72 | 0.00 | 4.02 |
4648 | 6006 | 4.383552 | GGAGGCTAGAGCTCTCAAATTTGA | 60.384 | 45.833 | 22.17 | 19.45 | 38.92 | 2.69 |
4691 | 6049 | 7.037297 | TGGAGGGAATGAGAGAATAGACTTTTT | 60.037 | 37.037 | 0.00 | 0.00 | 0.00 | 1.94 |
4696 | 6054 | 4.262420 | GCTGGAGGGAATGAGAGAATAGAC | 60.262 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4754 | 6112 | 4.579869 | GACCTTCTTAGAGGCACAATGAA | 58.420 | 43.478 | 0.00 | 0.00 | 40.65 | 2.57 |
4762 | 6120 | 2.427453 | TGATCACGACCTTCTTAGAGGC | 59.573 | 50.000 | 0.00 | 0.00 | 40.65 | 4.70 |
4765 | 6124 | 4.770531 | TCCTTTGATCACGACCTTCTTAGA | 59.229 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
4806 | 6165 | 2.573915 | TGCCCTCCAAAAGGTTTTGTTT | 59.426 | 40.909 | 12.90 | 0.00 | 44.56 | 2.83 |
4817 | 6176 | 0.555769 | AGTTGGTCTTGCCCTCCAAA | 59.444 | 50.000 | 0.00 | 0.00 | 41.86 | 3.28 |
4854 | 6217 | 8.598041 | TGCCCTTACCATAAATTTTGTTAATGT | 58.402 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
4901 | 6277 | 9.453325 | GAAAGACGGAAAATACAAAATGTAACA | 57.547 | 29.630 | 0.00 | 0.00 | 36.31 | 2.41 |
4967 | 6361 | 3.957497 | GGATATTGGGTTGCCACAATGTA | 59.043 | 43.478 | 1.13 | 0.00 | 37.80 | 2.29 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.