Multiple sequence alignment - TraesCS7D01G290600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G290600 chr7D 100.000 3932 0 0 1 3932 342633913 342629982 0.000000e+00 7262
1 TraesCS7D01G290600 chr7D 90.888 428 35 3 399 823 400470626 400471052 4.410000e-159 571
2 TraesCS7D01G290600 chr7A 98.553 3110 32 5 823 3929 352860142 352863241 0.000000e+00 5481
3 TraesCS7D01G290600 chr7A 90.176 397 27 8 1 385 352859754 352860150 1.260000e-139 507
4 TraesCS7D01G290600 chr7B 98.150 2594 26 8 823 3411 281387246 281384670 0.000000e+00 4505
5 TraesCS7D01G290600 chr7B 93.523 386 16 4 1 385 281387615 281387238 2.050000e-157 566
6 TraesCS7D01G290600 chr7B 89.906 426 41 2 399 823 535453192 535453616 7.430000e-152 547
7 TraesCS7D01G290600 chr7B 96.284 296 11 0 3634 3929 281384034 281383739 1.640000e-133 486
8 TraesCS7D01G290600 chr7B 99.099 111 1 0 3413 3523 281384505 281384395 2.400000e-47 200
9 TraesCS7D01G290600 chr7B 96.610 118 4 0 3521 3638 281384272 281384155 3.100000e-46 196
10 TraesCS7D01G290600 chr5A 80.406 1674 305 21 1266 2932 428408646 428410303 0.000000e+00 1253
11 TraesCS7D01G290600 chr5D 79.929 1679 307 25 1266 2932 327992030 327990370 0.000000e+00 1206
12 TraesCS7D01G290600 chr5B 79.893 1676 310 18 1266 2932 381357892 381356235 0.000000e+00 1203
13 TraesCS7D01G290600 chr5B 92.056 428 31 3 399 823 703090127 703089700 2.020000e-167 599
14 TraesCS7D01G290600 chr1A 91.589 428 32 4 400 823 60804689 60805116 4.380000e-164 588
15 TraesCS7D01G290600 chr1D 90.022 451 31 5 386 823 76981710 76981261 4.410000e-159 571
16 TraesCS7D01G290600 chr2D 91.059 425 30 6 400 823 506650467 506650050 5.700000e-158 568
17 TraesCS7D01G290600 chr1B 89.686 446 39 3 385 823 69195363 69194918 2.650000e-156 562
18 TraesCS7D01G290600 chr3B 90.210 429 38 4 399 823 112436054 112435626 1.230000e-154 556
19 TraesCS7D01G290600 chr3B 88.864 449 38 5 386 823 50530009 50529562 3.460000e-150 542


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G290600 chr7D 342629982 342633913 3931 True 7262.0 7262 100.0000 1 3932 1 chr7D.!!$R1 3931
1 TraesCS7D01G290600 chr7A 352859754 352863241 3487 False 2994.0 5481 94.3645 1 3929 2 chr7A.!!$F1 3928
2 TraesCS7D01G290600 chr7B 281383739 281387615 3876 True 1190.6 4505 96.7332 1 3929 5 chr7B.!!$R1 3928
3 TraesCS7D01G290600 chr5A 428408646 428410303 1657 False 1253.0 1253 80.4060 1266 2932 1 chr5A.!!$F1 1666
4 TraesCS7D01G290600 chr5D 327990370 327992030 1660 True 1206.0 1206 79.9290 1266 2932 1 chr5D.!!$R1 1666
5 TraesCS7D01G290600 chr5B 381356235 381357892 1657 True 1203.0 1203 79.8930 1266 2932 1 chr5B.!!$R1 1666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 443 0.032952 GCCCATCGTAATCGTGCCTA 59.967 55.0 0.0 0.0 38.33 3.93 F
557 570 0.102844 CGTTGGCCCATTTAGCATGG 59.897 55.0 0.0 0.0 38.88 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2554 2573 1.869767 CAGGATCTTTAGCCATGACGC 59.130 52.381 0.0 0.0 31.71 5.19 R
3067 3086 4.418013 TTGGCATGTCTGTTTATTGACG 57.582 40.909 0.0 0.0 36.10 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 5.942826 AGTTTGATTCTTCTTGGATCACCTC 59.057 40.000 0.00 0.00 37.04 3.85
124 125 3.024547 TCTTGGATCACCTCGTTCCTAG 58.975 50.000 0.00 0.00 37.56 3.02
184 191 2.287915 GACAACCATACGGCAATGCTAG 59.712 50.000 4.82 2.24 34.57 3.42
190 197 0.104855 TACGGCAATGCTAGAGGCTG 59.895 55.000 4.82 0.00 42.39 4.85
257 264 3.915575 CTGGAACCAGCATGCCTC 58.084 61.111 15.66 6.11 37.24 4.70
259 266 0.395311 CTGGAACCAGCATGCCTCAT 60.395 55.000 15.66 0.00 37.24 2.90
263 270 2.492012 GAACCAGCATGCCTCATAGAG 58.508 52.381 15.66 0.00 31.97 2.43
277 284 6.642707 CCTCATAGAGGTTGAAGTAGTAGG 57.357 45.833 4.89 0.00 44.25 3.18
376 389 2.674033 GCCTGGATGCAGCACACA 60.674 61.111 9.03 0.00 0.00 3.72
377 390 2.986306 GCCTGGATGCAGCACACAC 61.986 63.158 9.03 0.00 0.00 3.82
378 391 2.338015 CCTGGATGCAGCACACACC 61.338 63.158 9.03 0.00 0.00 4.16
379 392 2.669229 TGGATGCAGCACACACCG 60.669 61.111 3.51 0.00 32.60 4.94
380 393 3.434319 GGATGCAGCACACACCGG 61.434 66.667 3.51 0.00 0.00 5.28
381 394 2.358615 GATGCAGCACACACCGGA 60.359 61.111 9.46 0.00 0.00 5.14
382 395 2.359107 ATGCAGCACACACCGGAG 60.359 61.111 9.46 1.26 0.00 4.63
387 400 4.722700 GCACACACCGGAGCCCAT 62.723 66.667 9.46 0.00 0.00 4.00
388 401 2.986290 CACACACCGGAGCCCATA 59.014 61.111 9.46 0.00 0.00 2.74
389 402 1.449601 CACACACCGGAGCCCATAC 60.450 63.158 9.46 0.00 0.00 2.39
390 403 2.189521 CACACCGGAGCCCATACC 59.810 66.667 9.46 0.00 0.00 2.73
391 404 2.040606 ACACCGGAGCCCATACCT 59.959 61.111 9.46 0.00 0.00 3.08
392 405 2.367202 ACACCGGAGCCCATACCTG 61.367 63.158 9.46 0.00 0.00 4.00
393 406 2.768344 ACCGGAGCCCATACCTGG 60.768 66.667 9.46 0.00 42.73 4.45
399 412 3.616086 GCCCATACCTGGCCAAAC 58.384 61.111 7.01 0.00 43.33 2.93
400 413 2.414785 GCCCATACCTGGCCAAACG 61.415 63.158 7.01 0.00 43.33 3.60
401 414 1.752694 CCCATACCTGGCCAAACGG 60.753 63.158 7.01 7.56 41.64 4.44
422 435 4.265056 GGCCCGGCCCATCGTAAT 62.265 66.667 18.83 0.00 44.06 1.89
423 436 2.668550 GCCCGGCCCATCGTAATC 60.669 66.667 0.00 0.00 0.00 1.75
424 437 2.357034 CCCGGCCCATCGTAATCG 60.357 66.667 0.00 0.00 38.55 3.34
425 438 2.420043 CCGGCCCATCGTAATCGT 59.580 61.111 0.00 0.00 38.33 3.73
426 439 1.954146 CCGGCCCATCGTAATCGTG 60.954 63.158 0.00 0.00 38.33 4.35
427 440 2.594962 CGGCCCATCGTAATCGTGC 61.595 63.158 0.00 0.00 38.33 5.34
428 441 2.251642 GGCCCATCGTAATCGTGCC 61.252 63.158 0.00 0.00 38.33 5.01
429 442 1.227556 GCCCATCGTAATCGTGCCT 60.228 57.895 0.00 0.00 38.33 4.75
430 443 0.032952 GCCCATCGTAATCGTGCCTA 59.967 55.000 0.00 0.00 38.33 3.93
431 444 1.935300 GCCCATCGTAATCGTGCCTAG 60.935 57.143 0.00 0.00 38.33 3.02
432 445 1.419374 CCATCGTAATCGTGCCTAGC 58.581 55.000 0.00 0.00 38.33 3.42
433 446 1.419374 CATCGTAATCGTGCCTAGCC 58.581 55.000 0.00 0.00 38.33 3.93
434 447 0.317479 ATCGTAATCGTGCCTAGCCC 59.683 55.000 0.00 0.00 38.33 5.19
435 448 1.660575 CGTAATCGTGCCTAGCCCG 60.661 63.158 0.00 0.00 0.00 6.13
436 449 1.300697 GTAATCGTGCCTAGCCCGG 60.301 63.158 0.00 0.00 0.00 5.73
463 476 3.895232 CCGCTAGGGCATGATTACTAT 57.105 47.619 0.00 0.00 38.60 2.12
465 478 4.683832 CCGCTAGGGCATGATTACTATAC 58.316 47.826 0.00 0.00 38.60 1.47
466 479 4.159693 CCGCTAGGGCATGATTACTATACA 59.840 45.833 0.00 0.00 38.60 2.29
467 480 5.344066 CGCTAGGGCATGATTACTATACAG 58.656 45.833 0.00 0.00 38.60 2.74
468 481 5.665459 GCTAGGGCATGATTACTATACAGG 58.335 45.833 0.00 0.00 38.54 4.00
469 482 5.187967 GCTAGGGCATGATTACTATACAGGT 59.812 44.000 0.00 0.00 38.54 4.00
470 483 5.746990 AGGGCATGATTACTATACAGGTC 57.253 43.478 0.00 0.00 0.00 3.85
471 484 4.220821 AGGGCATGATTACTATACAGGTCG 59.779 45.833 0.00 0.00 0.00 4.79
472 485 4.021368 GGGCATGATTACTATACAGGTCGT 60.021 45.833 0.00 0.00 0.00 4.34
473 486 4.923871 GGCATGATTACTATACAGGTCGTG 59.076 45.833 0.00 0.00 0.00 4.35
474 487 4.386049 GCATGATTACTATACAGGTCGTGC 59.614 45.833 0.00 0.00 37.49 5.34
475 488 4.579454 TGATTACTATACAGGTCGTGCC 57.421 45.455 0.00 0.00 37.58 5.01
476 489 3.004002 TGATTACTATACAGGTCGTGCCG 59.996 47.826 0.00 0.00 43.70 5.69
477 490 2.042686 TACTATACAGGTCGTGCCGT 57.957 50.000 0.00 0.00 43.70 5.68
478 491 0.454600 ACTATACAGGTCGTGCCGTG 59.545 55.000 0.00 0.00 43.70 4.94
479 492 0.870307 CTATACAGGTCGTGCCGTGC 60.870 60.000 0.00 0.00 43.70 5.34
480 493 2.287457 TATACAGGTCGTGCCGTGCC 62.287 60.000 0.00 0.22 43.70 5.01
526 539 3.894742 GGCATGGCCCAGTTAGTAA 57.105 52.632 8.35 0.00 44.06 2.24
527 540 2.137810 GGCATGGCCCAGTTAGTAAA 57.862 50.000 8.35 0.00 44.06 2.01
528 541 1.749063 GGCATGGCCCAGTTAGTAAAC 59.251 52.381 8.35 0.00 44.06 2.01
529 542 1.400494 GCATGGCCCAGTTAGTAAACG 59.600 52.381 0.00 0.00 40.73 3.60
530 543 2.014128 CATGGCCCAGTTAGTAAACGG 58.986 52.381 0.00 0.00 40.73 4.44
531 544 0.325602 TGGCCCAGTTAGTAAACGGG 59.674 55.000 11.93 11.93 46.88 5.28
533 546 3.164026 CCCAGTTAGTAAACGGGCC 57.836 57.895 0.00 0.00 46.22 5.80
534 547 0.741927 CCCAGTTAGTAAACGGGCCG 60.742 60.000 27.06 27.06 46.22 6.13
535 548 0.741927 CCAGTTAGTAAACGGGCCGG 60.742 60.000 31.78 12.53 42.77 6.13
536 549 1.078918 AGTTAGTAAACGGGCCGGC 60.079 57.895 31.78 21.18 40.73 6.13
537 550 1.375780 GTTAGTAAACGGGCCGGCA 60.376 57.895 31.78 11.85 0.00 5.69
538 551 1.375780 TTAGTAAACGGGCCGGCAC 60.376 57.895 31.78 26.77 0.00 5.01
553 566 1.153842 GCACGTTGGCCCATTTAGC 60.154 57.895 0.00 0.00 0.00 3.09
554 567 1.872197 GCACGTTGGCCCATTTAGCA 61.872 55.000 0.00 0.00 0.00 3.49
555 568 0.817013 CACGTTGGCCCATTTAGCAT 59.183 50.000 0.00 0.00 0.00 3.79
556 569 0.817013 ACGTTGGCCCATTTAGCATG 59.183 50.000 0.00 0.00 0.00 4.06
557 570 0.102844 CGTTGGCCCATTTAGCATGG 59.897 55.000 0.00 0.00 38.88 3.66
558 571 1.194218 GTTGGCCCATTTAGCATGGT 58.806 50.000 0.00 1.62 37.48 3.55
559 572 1.134729 GTTGGCCCATTTAGCATGGTG 60.135 52.381 7.89 0.00 37.48 4.17
560 573 0.687098 TGGCCCATTTAGCATGGTGG 60.687 55.000 7.89 0.25 37.48 4.61
562 575 2.126951 CCCATTTAGCATGGTGGGC 58.873 57.895 7.89 0.00 44.32 5.36
563 576 0.687098 CCCATTTAGCATGGTGGGCA 60.687 55.000 7.89 0.00 44.32 5.36
564 577 0.748450 CCATTTAGCATGGTGGGCAG 59.252 55.000 7.89 0.00 34.56 4.85
565 578 0.103572 CATTTAGCATGGTGGGCAGC 59.896 55.000 7.89 0.00 0.00 5.25
566 579 0.324552 ATTTAGCATGGTGGGCAGCA 60.325 50.000 7.89 0.00 43.48 4.41
568 581 0.550432 TTAGCATGGTGGGCAGCATA 59.450 50.000 7.89 0.00 46.57 3.14
569 582 0.773014 TAGCATGGTGGGCAGCATAT 59.227 50.000 7.89 0.00 46.57 1.78
570 583 0.105862 AGCATGGTGGGCAGCATATT 60.106 50.000 0.00 0.00 46.57 1.28
571 584 0.754472 GCATGGTGGGCAGCATATTT 59.246 50.000 0.00 0.00 46.57 1.40
572 585 1.139455 GCATGGTGGGCAGCATATTTT 59.861 47.619 0.00 0.00 46.57 1.82
573 586 2.804212 GCATGGTGGGCAGCATATTTTC 60.804 50.000 0.00 0.00 46.57 2.29
574 587 2.228545 TGGTGGGCAGCATATTTTCA 57.771 45.000 0.00 0.00 33.39 2.69
575 588 2.533916 TGGTGGGCAGCATATTTTCAA 58.466 42.857 0.00 0.00 33.39 2.69
576 589 2.233431 TGGTGGGCAGCATATTTTCAAC 59.767 45.455 0.00 0.00 33.39 3.18
577 590 2.418609 GGTGGGCAGCATATTTTCAACC 60.419 50.000 0.00 0.00 0.00 3.77
578 591 2.497273 GTGGGCAGCATATTTTCAACCT 59.503 45.455 0.00 0.00 0.00 3.50
579 592 2.496871 TGGGCAGCATATTTTCAACCTG 59.503 45.455 0.00 0.00 0.00 4.00
580 593 2.543641 GGCAGCATATTTTCAACCTGC 58.456 47.619 0.00 0.00 43.52 4.85
581 594 2.167075 GGCAGCATATTTTCAACCTGCT 59.833 45.455 9.85 0.00 43.69 4.24
582 595 3.381272 GGCAGCATATTTTCAACCTGCTA 59.619 43.478 9.85 0.00 43.69 3.49
583 596 4.038402 GGCAGCATATTTTCAACCTGCTAT 59.962 41.667 9.85 0.00 43.69 2.97
584 597 5.452356 GGCAGCATATTTTCAACCTGCTATT 60.452 40.000 9.85 0.00 43.69 1.73
585 598 6.044682 GCAGCATATTTTCAACCTGCTATTT 58.955 36.000 0.00 0.00 41.01 1.40
586 599 6.019318 GCAGCATATTTTCAACCTGCTATTTG 60.019 38.462 0.00 0.00 41.01 2.32
587 600 7.259882 CAGCATATTTTCAACCTGCTATTTGA 58.740 34.615 0.00 0.00 41.01 2.69
588 601 7.221452 CAGCATATTTTCAACCTGCTATTTGAC 59.779 37.037 0.00 0.00 41.01 3.18
589 602 6.197096 GCATATTTTCAACCTGCTATTTGACG 59.803 38.462 0.00 0.00 31.42 4.35
590 603 3.552604 TTTCAACCTGCTATTTGACGC 57.447 42.857 0.00 0.00 31.42 5.19
591 604 2.177394 TCAACCTGCTATTTGACGCA 57.823 45.000 0.00 0.00 34.54 5.24
592 605 1.804151 TCAACCTGCTATTTGACGCAC 59.196 47.619 0.00 0.00 31.95 5.34
593 606 1.806542 CAACCTGCTATTTGACGCACT 59.193 47.619 0.00 0.00 31.95 4.40
594 607 1.442769 ACCTGCTATTTGACGCACTG 58.557 50.000 0.00 0.00 31.95 3.66
595 608 1.001974 ACCTGCTATTTGACGCACTGA 59.998 47.619 0.00 0.00 31.95 3.41
596 609 1.662629 CCTGCTATTTGACGCACTGAG 59.337 52.381 0.00 0.00 31.95 3.35
597 610 1.061711 CTGCTATTTGACGCACTGAGC 59.938 52.381 0.00 0.00 40.87 4.26
607 620 3.384702 GCACTGAGCGTTTTTAGCC 57.615 52.632 0.00 0.00 34.64 3.93
608 621 0.875059 GCACTGAGCGTTTTTAGCCT 59.125 50.000 0.00 0.00 34.64 4.58
609 622 2.073816 GCACTGAGCGTTTTTAGCCTA 58.926 47.619 0.00 0.00 34.64 3.93
610 623 2.678336 GCACTGAGCGTTTTTAGCCTAT 59.322 45.455 0.00 0.00 34.64 2.57
611 624 3.127030 GCACTGAGCGTTTTTAGCCTATT 59.873 43.478 0.00 0.00 34.64 1.73
612 625 4.379499 GCACTGAGCGTTTTTAGCCTATTT 60.379 41.667 0.00 0.00 34.64 1.40
613 626 5.699839 CACTGAGCGTTTTTAGCCTATTTT 58.300 37.500 0.00 0.00 34.64 1.82
614 627 6.149633 CACTGAGCGTTTTTAGCCTATTTTT 58.850 36.000 0.00 0.00 34.64 1.94
615 628 7.302524 CACTGAGCGTTTTTAGCCTATTTTTA 58.697 34.615 0.00 0.00 34.64 1.52
616 629 7.270579 CACTGAGCGTTTTTAGCCTATTTTTAC 59.729 37.037 0.00 0.00 34.64 2.01
617 630 7.040961 ACTGAGCGTTTTTAGCCTATTTTTACA 60.041 33.333 0.00 0.00 34.64 2.41
618 631 7.822658 TGAGCGTTTTTAGCCTATTTTTACAT 58.177 30.769 0.00 0.00 34.64 2.29
619 632 7.753132 TGAGCGTTTTTAGCCTATTTTTACATG 59.247 33.333 0.00 0.00 34.64 3.21
620 633 7.599171 AGCGTTTTTAGCCTATTTTTACATGT 58.401 30.769 2.69 2.69 34.64 3.21
621 634 8.085909 AGCGTTTTTAGCCTATTTTTACATGTT 58.914 29.630 2.30 0.00 34.64 2.71
622 635 8.159709 GCGTTTTTAGCCTATTTTTACATGTTG 58.840 33.333 2.30 0.00 0.00 3.33
623 636 8.643752 CGTTTTTAGCCTATTTTTACATGTTGG 58.356 33.333 2.30 0.00 0.00 3.77
624 637 8.931775 GTTTTTAGCCTATTTTTACATGTTGGG 58.068 33.333 2.30 0.00 0.00 4.12
625 638 4.736126 AGCCTATTTTTACATGTTGGGC 57.264 40.909 12.57 12.57 37.57 5.36
626 639 3.450817 AGCCTATTTTTACATGTTGGGCC 59.549 43.478 15.83 0.00 37.98 5.80
627 640 3.196685 GCCTATTTTTACATGTTGGGCCA 59.803 43.478 0.00 0.00 0.00 5.36
628 641 4.141733 GCCTATTTTTACATGTTGGGCCAT 60.142 41.667 7.26 0.00 0.00 4.40
629 642 5.069781 GCCTATTTTTACATGTTGGGCCATA 59.930 40.000 7.26 0.00 0.00 2.74
630 643 6.239572 GCCTATTTTTACATGTTGGGCCATAT 60.240 38.462 7.26 1.89 0.00 1.78
631 644 7.039363 GCCTATTTTTACATGTTGGGCCATATA 60.039 37.037 7.26 0.00 0.00 0.86
632 645 9.034800 CCTATTTTTACATGTTGGGCCATATAT 57.965 33.333 7.26 0.00 0.00 0.86
635 648 9.821240 ATTTTTACATGTTGGGCCATATATAGA 57.179 29.630 7.26 0.00 0.00 1.98
636 649 9.821240 TTTTTACATGTTGGGCCATATATAGAT 57.179 29.630 7.26 0.00 0.00 1.98
637 650 8.806429 TTTACATGTTGGGCCATATATAGATG 57.194 34.615 7.26 8.99 0.00 2.90
638 651 6.392911 ACATGTTGGGCCATATATAGATGT 57.607 37.500 7.26 9.71 0.00 3.06
639 652 7.509236 ACATGTTGGGCCATATATAGATGTA 57.491 36.000 14.29 0.00 0.00 2.29
640 653 8.106017 ACATGTTGGGCCATATATAGATGTAT 57.894 34.615 14.29 0.00 0.00 2.29
641 654 9.224486 ACATGTTGGGCCATATATAGATGTATA 57.776 33.333 14.29 0.00 0.00 1.47
658 671 8.361592 AGATGTATAAAAAGAACGTAATCGGG 57.638 34.615 0.00 0.00 41.85 5.14
659 672 6.348621 TGTATAAAAAGAACGTAATCGGGC 57.651 37.500 0.00 0.00 41.85 6.13
660 673 4.888038 ATAAAAAGAACGTAATCGGGCC 57.112 40.909 0.00 0.00 41.85 5.80
661 674 2.188062 AAAAGAACGTAATCGGGCCA 57.812 45.000 4.39 0.00 41.85 5.36
662 675 2.413310 AAAGAACGTAATCGGGCCAT 57.587 45.000 4.39 0.00 41.85 4.40
663 676 1.663695 AAGAACGTAATCGGGCCATG 58.336 50.000 4.39 0.00 41.85 3.66
664 677 0.814010 AGAACGTAATCGGGCCATGC 60.814 55.000 4.39 0.00 41.85 4.06
665 678 0.814010 GAACGTAATCGGGCCATGCT 60.814 55.000 4.39 0.00 41.85 3.79
666 679 1.095228 AACGTAATCGGGCCATGCTG 61.095 55.000 4.39 0.00 41.85 4.41
667 680 1.523711 CGTAATCGGGCCATGCTGT 60.524 57.895 4.39 0.00 0.00 4.40
668 681 0.249699 CGTAATCGGGCCATGCTGTA 60.250 55.000 4.39 0.00 0.00 2.74
669 682 1.226746 GTAATCGGGCCATGCTGTAC 58.773 55.000 4.39 0.00 0.00 2.90
670 683 0.107831 TAATCGGGCCATGCTGTACC 59.892 55.000 4.39 0.00 0.00 3.34
671 684 2.940890 AATCGGGCCATGCTGTACCG 62.941 60.000 4.39 0.00 45.52 4.02
680 693 4.230002 GCTGTACCGGCCCGCATA 62.230 66.667 0.00 0.00 0.00 3.14
681 694 2.279918 CTGTACCGGCCCGCATAC 60.280 66.667 0.00 2.98 0.00 2.39
682 695 3.802418 CTGTACCGGCCCGCATACC 62.802 68.421 0.00 0.00 0.00 2.73
683 696 4.614112 GTACCGGCCCGCATACCC 62.614 72.222 0.00 0.00 0.00 3.69
689 702 4.937431 GCCCGCATACCCAGCCTC 62.937 72.222 0.00 0.00 0.00 4.70
690 703 4.256180 CCCGCATACCCAGCCTCC 62.256 72.222 0.00 0.00 0.00 4.30
691 704 3.479203 CCGCATACCCAGCCTCCA 61.479 66.667 0.00 0.00 0.00 3.86
692 705 2.109799 CGCATACCCAGCCTCCAG 59.890 66.667 0.00 0.00 0.00 3.86
693 706 2.512896 GCATACCCAGCCTCCAGG 59.487 66.667 0.00 0.00 38.53 4.45
748 761 3.440415 GGCCTGTTTAGCCCGTGC 61.440 66.667 0.00 0.00 45.16 5.34
749 762 3.440415 GCCTGTTTAGCCCGTGCC 61.440 66.667 0.00 0.00 38.69 5.01
750 763 3.124921 CCTGTTTAGCCCGTGCCG 61.125 66.667 0.00 0.00 38.69 5.69
751 764 2.358247 CTGTTTAGCCCGTGCCGT 60.358 61.111 0.00 0.00 38.69 5.68
752 765 2.666862 TGTTTAGCCCGTGCCGTG 60.667 61.111 0.00 0.00 38.69 4.94
753 766 4.097863 GTTTAGCCCGTGCCGTGC 62.098 66.667 0.00 0.00 38.69 5.34
845 858 4.828925 GCCAGCCAGCTCGACTCC 62.829 72.222 0.00 0.00 0.00 3.85
2554 2573 1.510844 GCCACAAATTACCAGCGGG 59.489 57.895 0.00 0.00 41.29 6.13
3067 3086 8.779354 ACAATATAGTTGGTCAAGAACTCTTC 57.221 34.615 0.00 0.00 35.30 2.87
3071 3090 3.132289 AGTTGGTCAAGAACTCTTCGTCA 59.868 43.478 0.00 0.00 33.11 4.35
3164 3183 4.036734 TCTGTGAGCCAACTTGTTCATTTC 59.963 41.667 0.00 0.00 0.00 2.17
3357 3378 8.097038 TGTTATTAGCAATCATCTGGATAGTCC 58.903 37.037 0.00 0.00 34.28 3.85
3358 3379 6.692849 ATTAGCAATCATCTGGATAGTCCA 57.307 37.500 0.00 0.00 45.98 4.02
3391 3412 9.103861 CTTTGTGGGTTAGAGATAGAAAGATTC 57.896 37.037 0.00 0.00 0.00 2.52
3466 3650 5.182570 TGAATGCCAATCTTGAGTTTCTCTG 59.817 40.000 0.00 0.00 0.00 3.35
3577 3886 8.723942 TCTAAATGCTAATCTTGAACTTCTCC 57.276 34.615 0.00 0.00 0.00 3.71
3644 4078 2.501723 AGCCAGGAATGTACTACACAGG 59.498 50.000 0.00 0.00 41.51 4.00
3779 4213 2.781174 TCTTTGTCCTTACAACCTGGGT 59.219 45.455 0.00 0.00 45.18 4.51
3869 4303 0.878416 GGCCGTGTAATGCTTTGACA 59.122 50.000 0.00 0.00 0.00 3.58
3929 4363 8.635765 TTGGATATGAGATGGGTAATAAAAGC 57.364 34.615 0.00 0.00 0.00 3.51
3930 4364 6.878923 TGGATATGAGATGGGTAATAAAAGCG 59.121 38.462 0.00 0.00 0.00 4.68
3931 4365 7.103641 GGATATGAGATGGGTAATAAAAGCGA 58.896 38.462 0.00 0.00 0.00 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 7.597288 AAACTAAATCTGGTTAACCAAGCTT 57.403 32.000 26.90 20.17 46.97 3.74
116 117 0.964358 AGGGGTGTCGACTAGGAACG 60.964 60.000 17.92 0.00 0.00 3.95
124 125 2.037527 AGAGGGAGGGGTGTCGAC 59.962 66.667 9.11 9.11 0.00 4.20
184 191 2.684843 CCAAGCAAGTCGCAGCCTC 61.685 63.158 0.00 0.00 46.13 4.70
190 197 2.094417 GTCATCTAACCAAGCAAGTCGC 59.906 50.000 0.00 0.00 42.91 5.19
257 264 7.061688 AGTACCCTACTACTTCAACCTCTATG 58.938 42.308 0.00 0.00 37.23 2.23
259 266 6.216251 TGAGTACCCTACTACTTCAACCTCTA 59.784 42.308 0.00 0.00 39.59 2.43
263 270 5.892686 AGATGAGTACCCTACTACTTCAACC 59.107 44.000 0.00 0.00 39.59 3.77
277 284 5.932303 TGTTACAAAGCTCAAGATGAGTACC 59.068 40.000 8.97 0.00 45.94 3.34
376 389 2.768344 CCAGGTATGGGCTCCGGT 60.768 66.667 0.00 0.00 43.54 5.28
406 419 2.668550 GATTACGATGGGCCGGGC 60.669 66.667 22.00 22.00 0.00 6.13
407 420 2.357034 CGATTACGATGGGCCGGG 60.357 66.667 2.18 0.00 42.66 5.73
408 421 1.954146 CACGATTACGATGGGCCGG 60.954 63.158 0.00 0.00 42.66 6.13
409 422 2.594962 GCACGATTACGATGGGCCG 61.595 63.158 0.00 0.00 42.66 6.13
410 423 2.251642 GGCACGATTACGATGGGCC 61.252 63.158 0.00 0.00 42.66 5.80
411 424 0.032952 TAGGCACGATTACGATGGGC 59.967 55.000 0.00 0.00 42.66 5.36
412 425 1.935300 GCTAGGCACGATTACGATGGG 60.935 57.143 0.00 0.00 42.66 4.00
413 426 1.419374 GCTAGGCACGATTACGATGG 58.581 55.000 0.00 0.00 42.66 3.51
414 427 1.419374 GGCTAGGCACGATTACGATG 58.581 55.000 12.16 0.00 42.66 3.84
415 428 0.317479 GGGCTAGGCACGATTACGAT 59.683 55.000 19.14 0.00 42.66 3.73
416 429 1.737816 GGGCTAGGCACGATTACGA 59.262 57.895 19.14 0.00 42.66 3.43
417 430 4.338327 GGGCTAGGCACGATTACG 57.662 61.111 19.14 0.00 45.75 3.18
443 456 3.895232 ATAGTAATCATGCCCTAGCGG 57.105 47.619 0.00 0.00 44.31 5.52
444 457 5.324784 TGTATAGTAATCATGCCCTAGCG 57.675 43.478 0.00 0.00 44.31 4.26
445 458 5.187967 ACCTGTATAGTAATCATGCCCTAGC 59.812 44.000 0.00 0.00 40.48 3.42
446 459 6.404844 CGACCTGTATAGTAATCATGCCCTAG 60.405 46.154 0.00 0.00 0.00 3.02
447 460 5.417894 CGACCTGTATAGTAATCATGCCCTA 59.582 44.000 0.00 0.00 0.00 3.53
448 461 4.220821 CGACCTGTATAGTAATCATGCCCT 59.779 45.833 0.00 0.00 0.00 5.19
449 462 4.021368 ACGACCTGTATAGTAATCATGCCC 60.021 45.833 0.00 0.00 0.00 5.36
450 463 4.923871 CACGACCTGTATAGTAATCATGCC 59.076 45.833 0.00 0.00 0.00 4.40
451 464 4.386049 GCACGACCTGTATAGTAATCATGC 59.614 45.833 0.00 0.00 0.00 4.06
452 465 4.923871 GGCACGACCTGTATAGTAATCATG 59.076 45.833 0.00 0.00 34.51 3.07
453 466 5.135508 GGCACGACCTGTATAGTAATCAT 57.864 43.478 0.00 0.00 34.51 2.45
454 467 4.579454 GGCACGACCTGTATAGTAATCA 57.421 45.455 0.00 0.00 34.51 2.57
508 521 3.831664 CGTTTACTAACTGGGCCATGCC 61.832 54.545 6.72 0.00 38.91 4.40
509 522 1.400494 CGTTTACTAACTGGGCCATGC 59.600 52.381 6.72 0.00 31.89 4.06
510 523 2.014128 CCGTTTACTAACTGGGCCATG 58.986 52.381 6.72 3.79 31.89 3.66
511 524 1.064979 CCCGTTTACTAACTGGGCCAT 60.065 52.381 6.72 0.00 39.48 4.40
512 525 0.325602 CCCGTTTACTAACTGGGCCA 59.674 55.000 5.85 5.85 39.48 5.36
513 526 3.164026 CCCGTTTACTAACTGGGCC 57.836 57.895 0.00 0.00 39.48 5.80
515 528 0.741927 CGGCCCGTTTACTAACTGGG 60.742 60.000 0.00 11.19 44.21 4.45
516 529 0.741927 CCGGCCCGTTTACTAACTGG 60.742 60.000 0.85 0.00 40.48 4.00
517 530 1.363885 GCCGGCCCGTTTACTAACTG 61.364 60.000 18.11 0.00 31.89 3.16
518 531 1.078918 GCCGGCCCGTTTACTAACT 60.079 57.895 18.11 0.00 31.89 2.24
519 532 1.375780 TGCCGGCCCGTTTACTAAC 60.376 57.895 26.77 0.00 0.00 2.34
520 533 1.375780 GTGCCGGCCCGTTTACTAA 60.376 57.895 26.77 0.00 0.00 2.24
521 534 2.265424 GTGCCGGCCCGTTTACTA 59.735 61.111 26.77 0.00 0.00 1.82
524 537 4.622650 AACGTGCCGGCCCGTTTA 62.623 61.111 38.23 11.19 44.16 2.01
535 548 1.153842 GCTAAATGGGCCAACGTGC 60.154 57.895 11.89 9.84 0.00 5.34
536 549 0.817013 ATGCTAAATGGGCCAACGTG 59.183 50.000 11.89 2.66 0.00 4.49
537 550 0.817013 CATGCTAAATGGGCCAACGT 59.183 50.000 11.89 0.41 0.00 3.99
538 551 0.102844 CCATGCTAAATGGGCCAACG 59.897 55.000 11.89 0.00 35.58 4.10
539 552 1.134729 CACCATGCTAAATGGGCCAAC 60.135 52.381 11.89 0.00 43.32 3.77
540 553 1.193323 CACCATGCTAAATGGGCCAA 58.807 50.000 11.89 0.00 43.32 4.52
541 554 0.687098 CCACCATGCTAAATGGGCCA 60.687 55.000 9.61 9.61 43.32 5.36
542 555 1.402107 CCCACCATGCTAAATGGGCC 61.402 60.000 9.10 0.00 45.26 5.80
543 556 2.126951 CCCACCATGCTAAATGGGC 58.873 57.895 9.10 0.00 45.26 5.36
545 558 0.748450 CTGCCCACCATGCTAAATGG 59.252 55.000 2.79 2.79 44.54 3.16
546 559 0.103572 GCTGCCCACCATGCTAAATG 59.896 55.000 0.00 0.00 0.00 2.32
547 560 0.324552 TGCTGCCCACCATGCTAAAT 60.325 50.000 0.00 0.00 0.00 1.40
548 561 0.324552 ATGCTGCCCACCATGCTAAA 60.325 50.000 0.00 0.00 0.00 1.85
549 562 0.550432 TATGCTGCCCACCATGCTAA 59.450 50.000 0.00 0.00 0.00 3.09
550 563 0.773014 ATATGCTGCCCACCATGCTA 59.227 50.000 0.00 0.00 0.00 3.49
551 564 0.105862 AATATGCTGCCCACCATGCT 60.106 50.000 0.00 0.00 0.00 3.79
552 565 0.754472 AAATATGCTGCCCACCATGC 59.246 50.000 0.00 0.00 0.00 4.06
553 566 2.431419 TGAAAATATGCTGCCCACCATG 59.569 45.455 0.00 0.00 0.00 3.66
554 567 2.749600 TGAAAATATGCTGCCCACCAT 58.250 42.857 0.00 0.00 0.00 3.55
555 568 2.228545 TGAAAATATGCTGCCCACCA 57.771 45.000 0.00 0.00 0.00 4.17
556 569 2.418609 GGTTGAAAATATGCTGCCCACC 60.419 50.000 0.00 0.00 0.00 4.61
557 570 2.497273 AGGTTGAAAATATGCTGCCCAC 59.503 45.455 0.00 0.00 0.00 4.61
558 571 2.496871 CAGGTTGAAAATATGCTGCCCA 59.503 45.455 0.00 0.00 0.00 5.36
559 572 2.739609 GCAGGTTGAAAATATGCTGCCC 60.740 50.000 0.00 0.00 37.23 5.36
560 573 2.167075 AGCAGGTTGAAAATATGCTGCC 59.833 45.455 0.00 0.00 45.08 4.85
561 574 3.515330 AGCAGGTTGAAAATATGCTGC 57.485 42.857 0.00 0.00 45.08 5.25
562 575 7.221452 GTCAAATAGCAGGTTGAAAATATGCTG 59.779 37.037 8.17 0.00 45.90 4.41
564 577 6.197096 CGTCAAATAGCAGGTTGAAAATATGC 59.803 38.462 0.00 0.00 39.52 3.14
565 578 6.197096 GCGTCAAATAGCAGGTTGAAAATATG 59.803 38.462 0.00 0.00 35.60 1.78
566 579 6.127758 TGCGTCAAATAGCAGGTTGAAAATAT 60.128 34.615 0.00 0.00 38.59 1.28
567 580 5.182190 TGCGTCAAATAGCAGGTTGAAAATA 59.818 36.000 0.00 0.00 38.59 1.40
568 581 4.022416 TGCGTCAAATAGCAGGTTGAAAAT 60.022 37.500 0.00 0.00 38.59 1.82
569 582 3.316588 TGCGTCAAATAGCAGGTTGAAAA 59.683 39.130 0.00 0.00 38.59 2.29
570 583 2.881513 TGCGTCAAATAGCAGGTTGAAA 59.118 40.909 0.00 0.00 38.59 2.69
571 584 2.225491 GTGCGTCAAATAGCAGGTTGAA 59.775 45.455 0.00 0.00 44.70 2.69
572 585 1.804151 GTGCGTCAAATAGCAGGTTGA 59.196 47.619 0.00 0.00 44.70 3.18
573 586 1.806542 AGTGCGTCAAATAGCAGGTTG 59.193 47.619 0.00 0.00 44.70 3.77
574 587 1.806542 CAGTGCGTCAAATAGCAGGTT 59.193 47.619 0.00 0.00 44.70 3.50
575 588 1.001974 TCAGTGCGTCAAATAGCAGGT 59.998 47.619 0.00 0.00 44.70 4.00
576 589 1.662629 CTCAGTGCGTCAAATAGCAGG 59.337 52.381 0.00 0.00 44.70 4.85
577 590 1.061711 GCTCAGTGCGTCAAATAGCAG 59.938 52.381 0.00 0.00 44.70 4.24
578 591 1.078709 GCTCAGTGCGTCAAATAGCA 58.921 50.000 0.00 0.00 41.55 3.49
579 592 3.885777 GCTCAGTGCGTCAAATAGC 57.114 52.632 0.00 0.00 0.00 2.97
589 602 0.875059 AGGCTAAAAACGCTCAGTGC 59.125 50.000 0.00 0.00 38.57 4.40
590 603 4.946784 AATAGGCTAAAAACGCTCAGTG 57.053 40.909 0.00 0.00 0.00 3.66
591 604 5.959618 AAAATAGGCTAAAAACGCTCAGT 57.040 34.783 0.00 0.00 0.00 3.41
592 605 7.302524 TGTAAAAATAGGCTAAAAACGCTCAG 58.697 34.615 0.00 0.00 0.00 3.35
593 606 7.204496 TGTAAAAATAGGCTAAAAACGCTCA 57.796 32.000 0.00 0.00 0.00 4.26
594 607 7.753580 ACATGTAAAAATAGGCTAAAAACGCTC 59.246 33.333 0.00 0.00 0.00 5.03
595 608 7.599171 ACATGTAAAAATAGGCTAAAAACGCT 58.401 30.769 0.00 0.00 0.00 5.07
596 609 7.806149 ACATGTAAAAATAGGCTAAAAACGC 57.194 32.000 0.00 0.00 0.00 4.84
597 610 8.643752 CCAACATGTAAAAATAGGCTAAAAACG 58.356 33.333 0.00 0.00 0.00 3.60
598 611 8.931775 CCCAACATGTAAAAATAGGCTAAAAAC 58.068 33.333 0.00 0.00 0.00 2.43
599 612 7.604545 GCCCAACATGTAAAAATAGGCTAAAAA 59.395 33.333 0.00 0.00 35.00 1.94
600 613 7.100409 GCCCAACATGTAAAAATAGGCTAAAA 58.900 34.615 0.00 0.00 35.00 1.52
601 614 6.351456 GGCCCAACATGTAAAAATAGGCTAAA 60.351 38.462 0.00 0.00 37.98 1.85
602 615 5.128008 GGCCCAACATGTAAAAATAGGCTAA 59.872 40.000 0.00 0.00 37.98 3.09
603 616 4.647399 GGCCCAACATGTAAAAATAGGCTA 59.353 41.667 0.00 0.00 37.98 3.93
604 617 3.450817 GGCCCAACATGTAAAAATAGGCT 59.549 43.478 0.00 0.00 37.98 4.58
605 618 3.196685 TGGCCCAACATGTAAAAATAGGC 59.803 43.478 0.00 4.05 37.14 3.93
606 619 5.612725 ATGGCCCAACATGTAAAAATAGG 57.387 39.130 0.00 0.00 0.00 2.57
609 622 9.821240 TCTATATATGGCCCAACATGTAAAAAT 57.179 29.630 0.00 0.00 30.02 1.82
610 623 9.821240 ATCTATATATGGCCCAACATGTAAAAA 57.179 29.630 0.00 0.00 30.02 1.94
611 624 9.241919 CATCTATATATGGCCCAACATGTAAAA 57.758 33.333 0.00 0.00 30.02 1.52
612 625 8.390143 ACATCTATATATGGCCCAACATGTAAA 58.610 33.333 0.00 0.00 30.02 2.01
613 626 7.927788 ACATCTATATATGGCCCAACATGTAA 58.072 34.615 0.00 0.00 30.02 2.41
614 627 7.509236 ACATCTATATATGGCCCAACATGTA 57.491 36.000 0.00 0.00 32.39 2.29
615 628 6.392911 ACATCTATATATGGCCCAACATGT 57.607 37.500 0.00 0.00 32.39 3.21
632 645 9.467258 CCCGATTACGTTCTTTTTATACATCTA 57.533 33.333 0.00 0.00 37.88 1.98
633 646 7.042254 GCCCGATTACGTTCTTTTTATACATCT 60.042 37.037 0.00 0.00 37.88 2.90
634 647 7.067728 GCCCGATTACGTTCTTTTTATACATC 58.932 38.462 0.00 0.00 37.88 3.06
635 648 6.017687 GGCCCGATTACGTTCTTTTTATACAT 60.018 38.462 0.00 0.00 37.88 2.29
636 649 5.294060 GGCCCGATTACGTTCTTTTTATACA 59.706 40.000 0.00 0.00 37.88 2.29
637 650 5.294060 TGGCCCGATTACGTTCTTTTTATAC 59.706 40.000 0.00 0.00 37.88 1.47
638 651 5.426504 TGGCCCGATTACGTTCTTTTTATA 58.573 37.500 0.00 0.00 37.88 0.98
639 652 4.263435 TGGCCCGATTACGTTCTTTTTAT 58.737 39.130 0.00 0.00 37.88 1.40
640 653 3.672808 TGGCCCGATTACGTTCTTTTTA 58.327 40.909 0.00 0.00 37.88 1.52
641 654 2.506444 TGGCCCGATTACGTTCTTTTT 58.494 42.857 0.00 0.00 37.88 1.94
642 655 2.188062 TGGCCCGATTACGTTCTTTT 57.812 45.000 0.00 0.00 37.88 2.27
643 656 2.014128 CATGGCCCGATTACGTTCTTT 58.986 47.619 0.00 0.00 37.88 2.52
644 657 1.663695 CATGGCCCGATTACGTTCTT 58.336 50.000 0.00 0.00 37.88 2.52
645 658 0.814010 GCATGGCCCGATTACGTTCT 60.814 55.000 0.00 0.00 37.88 3.01
646 659 0.814010 AGCATGGCCCGATTACGTTC 60.814 55.000 0.00 0.00 37.88 3.95
647 660 1.095228 CAGCATGGCCCGATTACGTT 61.095 55.000 0.00 0.00 37.88 3.99
648 661 1.523711 CAGCATGGCCCGATTACGT 60.524 57.895 0.00 0.00 37.88 3.57
649 662 0.249699 TACAGCATGGCCCGATTACG 60.250 55.000 0.00 0.00 43.62 3.18
650 663 1.226746 GTACAGCATGGCCCGATTAC 58.773 55.000 0.00 0.00 43.62 1.89
651 664 0.107831 GGTACAGCATGGCCCGATTA 59.892 55.000 0.00 0.00 43.62 1.75
652 665 1.152963 GGTACAGCATGGCCCGATT 60.153 57.895 0.00 0.00 43.62 3.34
653 666 2.510906 GGTACAGCATGGCCCGAT 59.489 61.111 0.00 0.00 43.62 4.18
663 676 4.230002 TATGCGGGCCGGTACAGC 62.230 66.667 29.48 10.24 0.00 4.40
664 677 2.279918 GTATGCGGGCCGGTACAG 60.280 66.667 29.48 0.00 0.00 2.74
665 678 3.852307 GGTATGCGGGCCGGTACA 61.852 66.667 29.48 17.87 0.00 2.90
666 679 4.614112 GGGTATGCGGGCCGGTAC 62.614 72.222 29.48 11.92 0.00 3.34
672 685 4.937431 GAGGCTGGGTATGCGGGC 62.937 72.222 0.00 0.00 0.00 6.13
673 686 4.256180 GGAGGCTGGGTATGCGGG 62.256 72.222 0.00 0.00 0.00 6.13
674 687 3.466791 CTGGAGGCTGGGTATGCGG 62.467 68.421 0.00 0.00 0.00 5.69
675 688 2.109799 CTGGAGGCTGGGTATGCG 59.890 66.667 0.00 0.00 0.00 4.73
676 689 2.512896 CCTGGAGGCTGGGTATGC 59.487 66.667 0.00 0.00 0.00 3.14
732 745 3.440415 GGCACGGGCTAAACAGGC 61.440 66.667 10.74 0.00 40.87 4.85
807 820 2.120909 CGGTAGCTGGCCAAATGGG 61.121 63.158 7.01 0.00 40.85 4.00
808 821 2.120909 CCGGTAGCTGGCCAAATGG 61.121 63.158 7.01 0.00 38.53 3.16
809 822 1.077787 TCCGGTAGCTGGCCAAATG 60.078 57.895 7.01 0.00 0.00 2.32
810 823 1.224592 CTCCGGTAGCTGGCCAAAT 59.775 57.895 7.01 0.00 0.00 2.32
811 824 2.668632 CTCCGGTAGCTGGCCAAA 59.331 61.111 7.01 0.00 0.00 3.28
820 833 4.537433 GCTGGCTGGCTCCGGTAG 62.537 72.222 0.00 0.00 34.92 3.18
845 858 2.743126 GGACGAGGGAGTGATATAGACG 59.257 54.545 0.00 0.00 0.00 4.18
2554 2573 1.869767 CAGGATCTTTAGCCATGACGC 59.130 52.381 0.00 0.00 31.71 5.19
3067 3086 4.418013 TTGGCATGTCTGTTTATTGACG 57.582 40.909 0.00 0.00 36.10 4.35
3071 3090 8.752187 ACATAAGAATTGGCATGTCTGTTTATT 58.248 29.630 0.00 0.00 0.00 1.40
3357 3378 2.492881 TCTAACCCACAAAGCATGCATG 59.507 45.455 22.70 22.70 0.00 4.06
3358 3379 2.756760 CTCTAACCCACAAAGCATGCAT 59.243 45.455 21.98 4.57 0.00 3.96
3359 3380 2.161855 CTCTAACCCACAAAGCATGCA 58.838 47.619 21.98 0.00 0.00 3.96
3360 3381 2.436417 TCTCTAACCCACAAAGCATGC 58.564 47.619 10.51 10.51 0.00 4.06
3466 3650 0.804989 CCCGAAAGAAGATGTGCACC 59.195 55.000 15.69 0.00 0.00 5.01
3570 3879 5.343307 AAAAAGTTGTGCATTGGAGAAGT 57.657 34.783 0.00 0.00 0.00 3.01
3577 3886 5.115480 ACACCCTTAAAAAGTTGTGCATTG 58.885 37.500 0.00 0.00 34.53 2.82
3644 4078 6.362820 GGCAGTAACGTAGCATATAGAAGAAC 59.637 42.308 0.00 0.00 0.00 3.01
3779 4213 1.892474 GCCTTTCAAACTGGTGGCATA 59.108 47.619 0.00 0.00 40.04 3.14
3869 4303 6.884280 AAACGAGAGAAAAATCCAGTCAAT 57.116 33.333 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.