Multiple sequence alignment - TraesCS7D01G289600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G289600 chr7D 100.000 8160 0 0 1 8160 333685414 333693573 0.000000e+00 15069.0
1 TraesCS7D01G289600 chr7D 92.083 821 63 2 1 820 41536763 41537582 0.000000e+00 1155.0
2 TraesCS7D01G289600 chr7D 84.643 827 103 18 1 820 569151418 569152227 0.000000e+00 802.0
3 TraesCS7D01G289600 chr7D 84.401 827 107 17 1 820 569149868 569150679 0.000000e+00 793.0
4 TraesCS7D01G289600 chr7D 93.333 105 7 0 5455 5559 514658910 514658806 1.100000e-33 156.0
5 TraesCS7D01G289600 chr7A 97.941 6653 93 17 815 7451 371774675 371768051 0.000000e+00 11487.0
6 TraesCS7D01G289600 chr7A 96.486 370 13 0 7449 7818 371767999 371767630 5.410000e-171 612.0
7 TraesCS7D01G289600 chr7A 94.149 188 11 0 7815 8002 371767228 371767041 3.730000e-73 287.0
8 TraesCS7D01G289600 chr7B 97.356 4576 100 8 814 5382 306619019 306623580 0.000000e+00 7760.0
9 TraesCS7D01G289600 chr7B 96.053 1571 43 4 5370 6927 306624550 306626114 0.000000e+00 2540.0
10 TraesCS7D01G289600 chr7B 97.111 727 18 2 6969 7695 306626114 306626837 0.000000e+00 1223.0
11 TraesCS7D01G289600 chr7B 84.348 805 106 14 32 823 698311010 698311807 0.000000e+00 771.0
12 TraesCS7D01G289600 chr7B 97.377 305 8 0 7698 8002 306627213 306627517 3.380000e-143 520.0
13 TraesCS7D01G289600 chr7B 93.407 91 3 2 7438 7528 460106738 460106825 1.850000e-26 132.0
14 TraesCS7D01G289600 chr7B 91.209 91 5 2 7438 7528 460248678 460248765 4.000000e-23 121.0
15 TraesCS7D01G289600 chr7B 90.110 91 6 2 7438 7528 460102515 460102602 1.860000e-21 115.0
16 TraesCS7D01G289600 chr7B 94.737 57 3 0 4986 5042 306623469 306623525 1.130000e-13 89.8
17 TraesCS7D01G289600 chr1B 90.732 820 74 2 1 819 4039951 4040769 0.000000e+00 1092.0
18 TraesCS7D01G289600 chr1B 93.258 89 3 2 7436 7524 401618952 401619037 2.390000e-25 128.0
19 TraesCS7D01G289600 chr5D 88.503 835 80 7 1 821 540004551 540003719 0.000000e+00 996.0
20 TraesCS7D01G289600 chr5B 89.577 614 54 9 1 605 255899250 255899862 0.000000e+00 771.0
21 TraesCS7D01G289600 chr5B 100.000 29 0 0 6107 6135 90184451 90184423 4.000000e-03 54.7
22 TraesCS7D01G289600 chr6A 89.713 593 58 3 230 820 72847940 72848531 0.000000e+00 754.0
23 TraesCS7D01G289600 chr6A 96.894 161 5 0 8000 8160 24720077 24720237 3.750000e-68 270.0
24 TraesCS7D01G289600 chr4B 86.783 628 52 5 1 627 166564955 166565552 0.000000e+00 671.0
25 TraesCS7D01G289600 chr3D 81.073 708 87 27 118 822 16253442 16254105 9.380000e-144 521.0
26 TraesCS7D01G289600 chr3D 89.076 119 12 1 5442 5560 579138808 579138691 6.600000e-31 147.0
27 TraesCS7D01G289600 chr3D 88.506 87 8 1 7438 7524 541617669 541617753 4.030000e-18 104.0
28 TraesCS7D01G289600 chr3A 85.176 398 55 3 1 396 714080365 714080760 9.860000e-109 405.0
29 TraesCS7D01G289600 chr3A 100.000 41 0 0 6135 6175 686662131 686662171 8.780000e-10 76.8
30 TraesCS7D01G289600 chr6D 99.379 161 1 0 8000 8160 77325226 77325066 8.010000e-75 292.0
31 TraesCS7D01G289600 chr2B 92.593 162 10 2 8000 8160 32975928 32975768 1.770000e-56 231.0
32 TraesCS7D01G289600 chr2B 91.875 160 12 1 8002 8160 529269925 529269766 1.070000e-53 222.0
33 TraesCS7D01G289600 chr4D 90.678 118 9 2 5455 5571 261560115 261559999 1.100000e-33 156.0
34 TraesCS7D01G289600 chr5A 92.381 105 8 0 5455 5559 82866703 82866599 5.100000e-32 150.0
35 TraesCS7D01G289600 chr1A 92.381 105 8 0 5455 5559 28705644 28705748 5.100000e-32 150.0
36 TraesCS7D01G289600 chr1A 92.453 106 7 1 5455 5559 493816700 493816595 5.100000e-32 150.0
37 TraesCS7D01G289600 chr1A 91.589 107 9 0 5455 5561 104946162 104946056 1.830000e-31 148.0
38 TraesCS7D01G289600 chr2A 89.130 92 7 2 7434 7524 21264862 21264951 2.410000e-20 111.0
39 TraesCS7D01G289600 chr2A 85.577 104 6 5 7429 7526 79307966 79307866 5.210000e-17 100.0
40 TraesCS7D01G289600 chr1D 94.366 71 3 1 6106 6176 49932271 49932202 3.110000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G289600 chr7D 333685414 333693573 8159 False 15069.000000 15069 100.0000 1 8160 1 chr7D.!!$F2 8159
1 TraesCS7D01G289600 chr7D 41536763 41537582 819 False 1155.000000 1155 92.0830 1 820 1 chr7D.!!$F1 819
2 TraesCS7D01G289600 chr7D 569149868 569152227 2359 False 797.500000 802 84.5220 1 820 2 chr7D.!!$F3 819
3 TraesCS7D01G289600 chr7A 371767041 371774675 7634 True 4128.666667 11487 96.1920 815 8002 3 chr7A.!!$R1 7187
4 TraesCS7D01G289600 chr7B 306619019 306627517 8498 False 2426.560000 7760 96.5268 814 8002 5 chr7B.!!$F5 7188
5 TraesCS7D01G289600 chr7B 698311010 698311807 797 False 771.000000 771 84.3480 32 823 1 chr7B.!!$F4 791
6 TraesCS7D01G289600 chr1B 4039951 4040769 818 False 1092.000000 1092 90.7320 1 819 1 chr1B.!!$F1 818
7 TraesCS7D01G289600 chr5D 540003719 540004551 832 True 996.000000 996 88.5030 1 821 1 chr5D.!!$R1 820
8 TraesCS7D01G289600 chr5B 255899250 255899862 612 False 771.000000 771 89.5770 1 605 1 chr5B.!!$F1 604
9 TraesCS7D01G289600 chr6A 72847940 72848531 591 False 754.000000 754 89.7130 230 820 1 chr6A.!!$F2 590
10 TraesCS7D01G289600 chr4B 166564955 166565552 597 False 671.000000 671 86.7830 1 627 1 chr4B.!!$F1 626
11 TraesCS7D01G289600 chr3D 16253442 16254105 663 False 521.000000 521 81.0730 118 822 1 chr3D.!!$F1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
525 2133 0.036294 GTTTAGAAGCGGCAGGAGGT 60.036 55.000 1.45 0.00 0.00 3.85 F
1368 2979 2.298661 ACCCGAAACCCTAGCCCTG 61.299 63.158 0.00 0.00 0.00 4.45 F
1937 3548 2.052782 GTCCCAAAGGAACACACTGT 57.947 50.000 0.00 0.00 46.38 3.55 F
2494 4107 4.323104 GCCCACATTTTATTGGTGCCTTAA 60.323 41.667 0.00 0.00 0.00 1.85 F
3853 5474 3.066342 AGTGCATGCAGATACAGAAATGC 59.934 43.478 23.41 4.14 40.57 3.56 F
4373 5994 2.627221 TGCTGCAGCTAACATTTTTGGA 59.373 40.909 36.61 11.32 42.66 3.53 F
5288 6916 1.619654 TTCAGCACAACCCTGGATTG 58.380 50.000 0.00 0.00 0.00 2.67 F
6626 9250 0.976641 TCAGTTAGGGAGTGTGGCAG 59.023 55.000 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1723 3334 1.293179 CTCTGTCGATGCCACCACA 59.707 57.895 0.00 0.0 0.00 4.17 R
3175 4796 3.307410 CCCTACAGCCTGTGAAACACATA 60.307 47.826 7.83 0.0 45.67 2.29 R
3853 5474 8.456471 CAGTTACATTGGCATAATCCATCATAG 58.544 37.037 0.00 0.0 35.77 2.23 R
3968 5589 1.303317 GTCATGGCCACTTCCCGTT 60.303 57.895 8.16 0.0 0.00 4.44 R
5125 6749 2.034685 GGAAGGGAACAAAGCAACTCAC 59.965 50.000 0.00 0.0 0.00 3.51 R
5531 8142 3.641906 CCTCCGTCCCATATTAGTTGTCT 59.358 47.826 0.00 0.0 0.00 3.41 R
6675 9299 1.539065 CGGCAGCAGGTATAGAAGGTG 60.539 57.143 0.00 0.0 0.00 4.00 R
8122 11578 0.179004 TTGCCAAACTCATCGGTGGT 60.179 50.000 0.00 0.0 33.43 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 1.525077 GACGGCCTTGTTGGTGTCA 60.525 57.895 0.00 0.00 40.58 3.58
104 105 2.035442 GGAGAAGAACTGCCACCGC 61.035 63.158 0.00 0.00 0.00 5.68
105 106 2.032681 AGAAGAACTGCCACCGCC 59.967 61.111 0.00 0.00 0.00 6.13
166 203 2.512896 GCCTCCGCATCTTCCCAT 59.487 61.111 0.00 0.00 34.03 4.00
213 253 2.697761 GCTACTCCGTGTCGCCTCA 61.698 63.158 0.00 0.00 32.00 3.86
342 1928 2.272146 CCGCATGGCCCAGTAGTT 59.728 61.111 0.00 0.00 0.00 2.24
433 2031 4.697756 CGCTCCCAAGGACGGCAA 62.698 66.667 0.00 0.00 0.00 4.52
457 2055 3.272334 CGCCTGATTGTAGCGCCC 61.272 66.667 2.29 0.00 43.72 6.13
525 2133 0.036294 GTTTAGAAGCGGCAGGAGGT 60.036 55.000 1.45 0.00 0.00 3.85
549 2157 5.759059 AGGACATGATGCATAGAAGGAAAA 58.241 37.500 0.00 0.00 0.00 2.29
710 2320 8.956533 TGATCAATGATGACCGTTAGATTTAA 57.043 30.769 0.00 0.00 38.69 1.52
769 2380 5.522460 CGTGTGGTATTGTGGGACTAATTAG 59.478 44.000 11.05 11.05 0.00 1.73
772 2383 5.131475 GTGGTATTGTGGGACTAATTAGGGA 59.869 44.000 16.73 0.00 0.00 4.20
783 2394 7.624478 TGGGACTAATTAGGGAGTACATGTAAA 59.376 37.037 16.73 0.00 0.00 2.01
790 2401 9.596308 AATTAGGGAGTACATGTAAAAAGGTTT 57.404 29.630 7.25 0.00 0.00 3.27
1368 2979 2.298661 ACCCGAAACCCTAGCCCTG 61.299 63.158 0.00 0.00 0.00 4.45
1640 3251 4.722700 GCTCAAGCGGAAGGGGCA 62.723 66.667 0.00 0.00 0.00 5.36
1758 3369 4.858850 ACAGAGGGAATGCAATCATAACA 58.141 39.130 3.77 0.00 31.46 2.41
1840 3451 8.635765 ATTATATAAGGATGTGCGATGGTTTT 57.364 30.769 1.02 0.00 0.00 2.43
1937 3548 2.052782 GTCCCAAAGGAACACACTGT 57.947 50.000 0.00 0.00 46.38 3.55
2494 4107 4.323104 GCCCACATTTTATTGGTGCCTTAA 60.323 41.667 0.00 0.00 0.00 1.85
2503 4116 7.807977 TTTATTGGTGCCTTAAATTTTGCAA 57.192 28.000 10.20 0.00 35.16 4.08
2504 4117 5.687770 ATTGGTGCCTTAAATTTTGCAAC 57.312 34.783 14.59 14.59 41.72 4.17
3853 5474 3.066342 AGTGCATGCAGATACAGAAATGC 59.934 43.478 23.41 4.14 40.57 3.56
3968 5589 8.239314 GCTGAAGTTGATGATTTTAGTGATCAA 58.761 33.333 0.00 0.00 37.11 2.57
4373 5994 2.627221 TGCTGCAGCTAACATTTTTGGA 59.373 40.909 36.61 11.32 42.66 3.53
4452 6073 5.627499 TGTTGCAACTAATGTGGATTCTC 57.373 39.130 28.61 0.00 0.00 2.87
4709 6330 2.714793 AGCCAGTAACTTAACCAAGGGT 59.285 45.455 0.00 0.00 37.65 4.34
5063 6687 4.188462 TGCACGATATAGAAGTGGTTTGG 58.812 43.478 0.00 0.00 36.48 3.28
5288 6916 1.619654 TTCAGCACAACCCTGGATTG 58.380 50.000 0.00 0.00 0.00 2.67
5323 6951 6.646267 ACATGATTTTGCAGGCTTTCATAAT 58.354 32.000 0.00 0.00 0.00 1.28
5483 8094 4.149617 CGTCCTATATTAGTTGTCGCTCG 58.850 47.826 0.00 0.00 0.00 5.03
5567 8178 4.081586 GGGACGGAGGGAGTATTCAATATC 60.082 50.000 0.00 0.00 0.00 1.63
5668 8279 1.161843 AAACTACACCGGCCAATTCG 58.838 50.000 0.00 0.00 0.00 3.34
5710 8321 3.741245 TTGGGAATGGGGAATTTCGTA 57.259 42.857 0.00 0.00 0.00 3.43
5805 8416 7.814264 ATGCCTCTTTGATATTCTAACTTGG 57.186 36.000 0.00 0.00 0.00 3.61
5806 8417 6.122277 TGCCTCTTTGATATTCTAACTTGGG 58.878 40.000 0.00 0.00 0.00 4.12
5807 8418 6.069673 TGCCTCTTTGATATTCTAACTTGGGA 60.070 38.462 0.00 0.00 0.00 4.37
5812 8435 9.542462 TCTTTGATATTCTAACTTGGGATAACG 57.458 33.333 0.00 0.00 0.00 3.18
5909 8532 5.945155 TGATTGTTTATACAACGCCTTTCC 58.055 37.500 0.54 0.00 46.38 3.13
6131 8754 8.718102 AATAAGTGTCGCTGATTTAGTACAAT 57.282 30.769 0.00 0.00 0.00 2.71
6284 8907 4.857871 TTTGTTCTCGTTCTCACAACTG 57.142 40.909 0.00 0.00 0.00 3.16
6626 9250 0.976641 TCAGTTAGGGAGTGTGGCAG 59.023 55.000 0.00 0.00 0.00 4.85
6783 9407 1.673626 GCACATGGCTGGAACCAATTG 60.674 52.381 0.00 0.00 44.65 2.32
7090 9714 3.053917 AGGTTGGTAATTACGGCCTCATT 60.054 43.478 14.58 0.00 0.00 2.57
7183 9807 4.047822 GTCATCTGAATAGCGTTGGAGAG 58.952 47.826 0.00 0.00 0.00 3.20
7464 10142 6.928348 TCCTCTGTTCCTAAATGTAAGACA 57.072 37.500 0.00 0.00 0.00 3.41
7501 10179 7.432838 TCAATTTAAACTGGCAAAACGTCTTAC 59.567 33.333 0.00 0.00 0.00 2.34
7555 10233 4.092091 CGGCAGTGATGAAAACTCTTCTAC 59.908 45.833 0.00 0.00 0.00 2.59
7779 10830 6.875076 AGTTGTATGGGCTTATATATCGGTC 58.125 40.000 0.00 0.00 0.00 4.79
7844 11300 0.029700 GCGGCGTTGTACTTTTGGTT 59.970 50.000 9.37 0.00 0.00 3.67
7963 11419 6.494893 TTTGAAAGGACATTTATCTCCGTG 57.505 37.500 0.00 0.00 0.00 4.94
8003 11459 7.144722 TGACAATGCAATTTACAGACTAAGG 57.855 36.000 0.00 0.00 31.22 2.69
8004 11460 5.954335 ACAATGCAATTTACAGACTAAGGC 58.046 37.500 0.00 0.00 31.22 4.35
8005 11461 5.711976 ACAATGCAATTTACAGACTAAGGCT 59.288 36.000 0.00 0.00 31.22 4.58
8006 11462 6.209391 ACAATGCAATTTACAGACTAAGGCTT 59.791 34.615 4.58 4.58 31.22 4.35
8007 11463 7.393234 ACAATGCAATTTACAGACTAAGGCTTA 59.607 33.333 6.80 6.80 31.22 3.09
8008 11464 6.985188 TGCAATTTACAGACTAAGGCTTAG 57.015 37.500 28.27 28.27 39.18 2.18
8009 11465 7.611855 AATGCAATTTACAGACTAAGGCTTAGT 59.388 33.333 33.86 33.86 40.88 2.24
8010 11466 6.940298 TGCAATTTACAGACTAAGGCTTAGTT 59.060 34.615 33.74 23.19 46.01 2.24
8011 11467 7.447238 TGCAATTTACAGACTAAGGCTTAGTTT 59.553 33.333 33.74 27.54 46.01 2.66
8013 11469 7.923414 ATTTACAGACTAAGGCTTAGTTTGG 57.077 36.000 39.01 30.56 46.74 3.28
8014 11470 3.676093 ACAGACTAAGGCTTAGTTTGGC 58.324 45.455 39.01 27.62 46.74 4.52
8015 11471 3.072476 ACAGACTAAGGCTTAGTTTGGCA 59.928 43.478 39.01 11.29 46.74 4.92
8016 11472 3.686726 CAGACTAAGGCTTAGTTTGGCAG 59.313 47.826 33.89 19.67 46.01 4.85
8017 11473 2.420372 GACTAAGGCTTAGTTTGGCAGC 59.580 50.000 33.74 19.15 46.01 5.25
8018 11474 2.224769 ACTAAGGCTTAGTTTGGCAGCA 60.225 45.455 29.55 0.00 43.70 4.41
8019 11475 0.961753 AAGGCTTAGTTTGGCAGCAC 59.038 50.000 0.00 0.00 35.05 4.40
8020 11476 0.111253 AGGCTTAGTTTGGCAGCACT 59.889 50.000 6.64 6.64 35.05 4.40
8021 11477 0.242017 GGCTTAGTTTGGCAGCACTG 59.758 55.000 10.77 0.00 35.05 3.66
8022 11478 0.954452 GCTTAGTTTGGCAGCACTGT 59.046 50.000 10.77 0.00 33.45 3.55
8023 11479 1.338020 GCTTAGTTTGGCAGCACTGTT 59.662 47.619 10.77 0.00 33.45 3.16
8024 11480 2.223805 GCTTAGTTTGGCAGCACTGTTT 60.224 45.455 10.77 0.00 33.45 2.83
8025 11481 3.737972 GCTTAGTTTGGCAGCACTGTTTT 60.738 43.478 10.77 0.00 33.45 2.43
8026 11482 4.432712 CTTAGTTTGGCAGCACTGTTTTT 58.567 39.130 10.77 0.00 0.00 1.94
8027 11483 2.620242 AGTTTGGCAGCACTGTTTTTG 58.380 42.857 0.00 0.00 0.00 2.44
8028 11484 2.233431 AGTTTGGCAGCACTGTTTTTGA 59.767 40.909 0.00 0.00 0.00 2.69
8029 11485 2.999355 GTTTGGCAGCACTGTTTTTGAA 59.001 40.909 0.00 0.00 0.00 2.69
8030 11486 3.325293 TTGGCAGCACTGTTTTTGAAA 57.675 38.095 0.00 0.00 0.00 2.69
8031 11487 3.325293 TGGCAGCACTGTTTTTGAAAA 57.675 38.095 0.00 0.00 0.00 2.29
8032 11488 3.668447 TGGCAGCACTGTTTTTGAAAAA 58.332 36.364 0.00 0.00 0.00 1.94
8053 11509 6.783708 AAAACACAGTAATCCAAAACCTCA 57.216 33.333 0.00 0.00 0.00 3.86
8054 11510 6.391227 AAACACAGTAATCCAAAACCTCAG 57.609 37.500 0.00 0.00 0.00 3.35
8055 11511 3.821033 ACACAGTAATCCAAAACCTCAGC 59.179 43.478 0.00 0.00 0.00 4.26
8056 11512 4.074970 CACAGTAATCCAAAACCTCAGCT 58.925 43.478 0.00 0.00 0.00 4.24
8057 11513 4.520492 CACAGTAATCCAAAACCTCAGCTT 59.480 41.667 0.00 0.00 0.00 3.74
8058 11514 5.010012 CACAGTAATCCAAAACCTCAGCTTT 59.990 40.000 0.00 0.00 0.00 3.51
8059 11515 5.598417 ACAGTAATCCAAAACCTCAGCTTTT 59.402 36.000 0.00 0.00 0.00 2.27
8060 11516 6.775629 ACAGTAATCCAAAACCTCAGCTTTTA 59.224 34.615 0.00 0.00 0.00 1.52
8061 11517 7.286775 ACAGTAATCCAAAACCTCAGCTTTTAA 59.713 33.333 0.00 0.00 0.00 1.52
8062 11518 8.141268 CAGTAATCCAAAACCTCAGCTTTTAAA 58.859 33.333 0.00 0.00 0.00 1.52
8063 11519 8.870116 AGTAATCCAAAACCTCAGCTTTTAAAT 58.130 29.630 0.00 0.00 0.00 1.40
8064 11520 7.967890 AATCCAAAACCTCAGCTTTTAAATG 57.032 32.000 0.00 0.00 0.00 2.32
8065 11521 5.296748 TCCAAAACCTCAGCTTTTAAATGC 58.703 37.500 16.18 16.18 0.00 3.56
8066 11522 5.055812 CCAAAACCTCAGCTTTTAAATGCA 58.944 37.500 23.38 7.23 0.00 3.96
8067 11523 5.702209 CCAAAACCTCAGCTTTTAAATGCAT 59.298 36.000 23.38 0.00 0.00 3.96
8068 11524 6.347888 CCAAAACCTCAGCTTTTAAATGCATG 60.348 38.462 23.38 18.17 0.00 4.06
8069 11525 4.460948 ACCTCAGCTTTTAAATGCATGG 57.539 40.909 23.38 21.46 0.00 3.66
8070 11526 3.196254 ACCTCAGCTTTTAAATGCATGGG 59.804 43.478 23.38 21.12 0.00 4.00
8071 11527 3.192466 CTCAGCTTTTAAATGCATGGGC 58.808 45.455 23.38 0.00 41.68 5.36
8083 11539 2.475200 GCATGGGCAACGAATACTTC 57.525 50.000 0.00 0.00 40.72 3.01
8115 11571 5.692115 AAACCATGGTTTTCCTCAGTTTT 57.308 34.783 32.77 10.36 44.84 2.43
8116 11572 4.937201 ACCATGGTTTTCCTCAGTTTTC 57.063 40.909 13.00 0.00 41.38 2.29
8117 11573 4.285863 ACCATGGTTTTCCTCAGTTTTCA 58.714 39.130 13.00 0.00 41.38 2.69
8118 11574 4.099419 ACCATGGTTTTCCTCAGTTTTCAC 59.901 41.667 13.00 0.00 41.38 3.18
8119 11575 4.099266 CCATGGTTTTCCTCAGTTTTCACA 59.901 41.667 2.57 0.00 41.38 3.58
8120 11576 5.395103 CCATGGTTTTCCTCAGTTTTCACAA 60.395 40.000 2.57 0.00 41.38 3.33
8121 11577 5.930837 TGGTTTTCCTCAGTTTTCACAAT 57.069 34.783 0.00 0.00 41.38 2.71
8122 11578 7.432869 CATGGTTTTCCTCAGTTTTCACAATA 58.567 34.615 0.00 0.00 41.38 1.90
8123 11579 6.801575 TGGTTTTCCTCAGTTTTCACAATAC 58.198 36.000 0.00 0.00 41.38 1.89
8124 11580 6.183360 TGGTTTTCCTCAGTTTTCACAATACC 60.183 38.462 0.00 0.00 41.38 2.73
8125 11581 6.183360 GGTTTTCCTCAGTTTTCACAATACCA 60.183 38.462 0.00 0.00 36.94 3.25
8126 11582 6.385649 TTTCCTCAGTTTTCACAATACCAC 57.614 37.500 0.00 0.00 0.00 4.16
8127 11583 4.394729 TCCTCAGTTTTCACAATACCACC 58.605 43.478 0.00 0.00 0.00 4.61
8128 11584 3.188460 CCTCAGTTTTCACAATACCACCG 59.812 47.826 0.00 0.00 0.00 4.94
8129 11585 4.062293 CTCAGTTTTCACAATACCACCGA 58.938 43.478 0.00 0.00 0.00 4.69
8130 11586 4.647611 TCAGTTTTCACAATACCACCGAT 58.352 39.130 0.00 0.00 0.00 4.18
8131 11587 4.454161 TCAGTTTTCACAATACCACCGATG 59.546 41.667 0.00 0.00 0.00 3.84
8132 11588 4.454161 CAGTTTTCACAATACCACCGATGA 59.546 41.667 0.00 0.00 0.00 2.92
8133 11589 4.695455 AGTTTTCACAATACCACCGATGAG 59.305 41.667 0.00 0.00 0.00 2.90
8134 11590 3.973206 TTCACAATACCACCGATGAGT 57.027 42.857 0.00 0.00 0.00 3.41
8135 11591 3.973206 TCACAATACCACCGATGAGTT 57.027 42.857 0.00 0.00 0.00 3.01
8136 11592 4.280436 TCACAATACCACCGATGAGTTT 57.720 40.909 0.00 0.00 0.00 2.66
8137 11593 4.000325 TCACAATACCACCGATGAGTTTG 59.000 43.478 0.00 0.00 0.00 2.93
8138 11594 3.126858 CACAATACCACCGATGAGTTTGG 59.873 47.826 0.00 0.00 35.06 3.28
8139 11595 2.038387 ATACCACCGATGAGTTTGGC 57.962 50.000 0.00 0.00 31.76 4.52
8140 11596 0.687920 TACCACCGATGAGTTTGGCA 59.312 50.000 0.00 0.00 31.76 4.92
8141 11597 0.179004 ACCACCGATGAGTTTGGCAA 60.179 50.000 0.00 0.00 31.76 4.52
8142 11598 0.240945 CCACCGATGAGTTTGGCAAC 59.759 55.000 0.00 0.00 30.99 4.17
8143 11599 1.238439 CACCGATGAGTTTGGCAACT 58.762 50.000 0.00 0.12 46.64 3.16
8144 11600 1.069022 CACCGATGAGTTTGGCAACTG 60.069 52.381 0.00 0.00 43.79 3.16
8145 11601 1.202758 ACCGATGAGTTTGGCAACTGA 60.203 47.619 0.00 0.00 43.79 3.41
8146 11602 2.086869 CCGATGAGTTTGGCAACTGAT 58.913 47.619 0.00 0.24 43.79 2.90
8147 11603 2.159476 CCGATGAGTTTGGCAACTGATG 60.159 50.000 0.00 0.00 43.79 3.07
8148 11604 2.485426 CGATGAGTTTGGCAACTGATGT 59.515 45.455 0.00 0.00 43.79 3.06
8149 11605 3.058016 CGATGAGTTTGGCAACTGATGTT 60.058 43.478 0.00 0.00 43.79 2.71
8150 11606 4.557296 CGATGAGTTTGGCAACTGATGTTT 60.557 41.667 0.00 0.00 43.79 2.83
8151 11607 4.044336 TGAGTTTGGCAACTGATGTTTG 57.956 40.909 0.00 0.00 43.79 2.93
8152 11608 3.698539 TGAGTTTGGCAACTGATGTTTGA 59.301 39.130 0.00 0.00 43.79 2.69
8153 11609 4.044426 GAGTTTGGCAACTGATGTTTGAC 58.956 43.478 0.00 0.00 43.79 3.18
8154 11610 3.701040 AGTTTGGCAACTGATGTTTGACT 59.299 39.130 0.00 0.00 42.05 3.41
8155 11611 3.988379 TTGGCAACTGATGTTTGACTC 57.012 42.857 0.00 0.00 33.52 3.36
8156 11612 1.872952 TGGCAACTGATGTTTGACTCG 59.127 47.619 0.00 0.00 33.52 4.18
8157 11613 1.400242 GGCAACTGATGTTTGACTCGC 60.400 52.381 0.00 0.00 33.52 5.03
8158 11614 1.532868 GCAACTGATGTTTGACTCGCT 59.467 47.619 0.00 0.00 33.52 4.93
8159 11615 2.663879 GCAACTGATGTTTGACTCGCTG 60.664 50.000 0.00 0.00 33.52 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.026718 GCTCGCCAACCAGCAACTAT 61.027 55.000 0.00 0.00 35.56 2.12
29 30 1.671054 GCTCGCCAACCAGCAACTA 60.671 57.895 0.00 0.00 35.56 2.24
77 78 3.080319 GCAGTTCTTCTCCAGCATTTCT 58.920 45.455 0.00 0.00 0.00 2.52
166 203 1.069090 GTGGCACTTCTGTCGGTGA 59.931 57.895 11.13 0.00 35.69 4.02
344 1930 4.867599 CCTTACGCGCGGAGTCCC 62.868 72.222 35.22 0.00 0.00 4.46
525 2133 6.499106 TTTCCTTCTATGCATCATGTCCTA 57.501 37.500 0.19 0.00 0.00 2.94
636 2245 5.818136 ATTTTGGATGACTGACCGTATTG 57.182 39.130 0.00 0.00 0.00 1.90
678 2287 9.817365 CTAACGGTCATCATTGATCAAATATTC 57.183 33.333 13.09 2.25 32.06 1.75
710 2320 5.642063 CACCACACGATTAGGTTCATAAGTT 59.358 40.000 0.00 0.00 32.15 2.66
769 2380 7.494211 ACAAAAACCTTTTTACATGTACTCCC 58.506 34.615 4.68 0.00 38.23 4.30
772 2383 8.460428 TCGAACAAAAACCTTTTTACATGTACT 58.540 29.630 4.68 0.00 38.23 2.73
790 2401 9.491675 TCCACTACTATTAAACAATCGAACAAA 57.508 29.630 0.00 0.00 0.00 2.83
1128 2739 1.153745 AGCACGGTCGATCTTGAGC 60.154 57.895 6.32 0.00 0.00 4.26
1343 2954 3.961414 GGGTTTCGGGTGGAGGCA 61.961 66.667 0.00 0.00 0.00 4.75
1723 3334 1.293179 CTCTGTCGATGCCACCACA 59.707 57.895 0.00 0.00 0.00 4.17
1840 3451 7.429633 CATTCCTAAAATGTACACACAAACCA 58.570 34.615 0.00 0.00 38.42 3.67
2098 3709 6.205658 GGGTGAAGGATATATCAAAGAAGTGC 59.794 42.308 14.60 0.00 0.00 4.40
2265 3878 8.349983 GTGTTAAAGCCCTTATAACACCATATG 58.650 37.037 20.58 0.00 46.93 1.78
2494 4107 3.826729 GGTAGTCCCTCTGTTGCAAAATT 59.173 43.478 0.00 0.00 0.00 1.82
2503 4116 5.342866 ACAAATAGAAGGTAGTCCCTCTGT 58.657 41.667 0.00 0.00 45.47 3.41
2504 4117 5.941555 ACAAATAGAAGGTAGTCCCTCTG 57.058 43.478 0.00 0.00 45.47 3.35
2701 4316 9.382244 CCTTAAACAGAAAAGTAATTCTTGACG 57.618 33.333 0.00 0.00 37.56 4.35
3129 4744 8.811994 AGGTACAAAATAAAATGGCATACACTT 58.188 29.630 0.00 0.00 0.00 3.16
3170 4791 6.892658 ACAGCCTGTGAAACACATAAATTA 57.107 33.333 0.00 0.00 45.67 1.40
3171 4792 5.789643 ACAGCCTGTGAAACACATAAATT 57.210 34.783 0.00 0.00 45.67 1.82
3172 4793 5.415701 CCTACAGCCTGTGAAACACATAAAT 59.584 40.000 7.83 0.00 45.67 1.40
3173 4794 4.759693 CCTACAGCCTGTGAAACACATAAA 59.240 41.667 7.83 0.00 45.67 1.40
3174 4795 4.323417 CCTACAGCCTGTGAAACACATAA 58.677 43.478 7.83 0.00 45.67 1.90
3175 4796 3.307410 CCCTACAGCCTGTGAAACACATA 60.307 47.826 7.83 0.00 45.67 2.29
3853 5474 8.456471 CAGTTACATTGGCATAATCCATCATAG 58.544 37.037 0.00 0.00 35.77 2.23
3968 5589 1.303317 GTCATGGCCACTTCCCGTT 60.303 57.895 8.16 0.00 0.00 4.44
4373 5994 6.015772 GGTACACCATGGTATTGTTCTTGTTT 60.016 38.462 19.28 0.00 35.64 2.83
4401 6022 1.818674 GGGGCATGTGTTCAAACTAGG 59.181 52.381 0.00 0.00 0.00 3.02
4452 6073 3.371168 CATGTGTTGAACGGGAAACAAG 58.629 45.455 1.33 0.00 37.99 3.16
4709 6330 5.653330 ACCATTCATGCAGTTGACATCAATA 59.347 36.000 0.00 0.00 38.24 1.90
4753 6374 2.112297 GACCCTCCACGTTGGCAA 59.888 61.111 0.00 0.00 37.47 4.52
5125 6749 2.034685 GGAAGGGAACAAAGCAACTCAC 59.965 50.000 0.00 0.00 0.00 3.51
5177 6801 4.819769 TCAAATCCATTTGCTTTGCCTAC 58.180 39.130 7.10 0.00 45.06 3.18
5288 6916 7.413988 GCCTGCAAAATCATGTAAATTTTACCC 60.414 37.037 14.99 0.00 35.20 3.69
5323 6951 7.978975 CAGACCTTACATTTGGTTTTGAAAGAA 59.021 33.333 0.00 0.00 36.59 2.52
5483 8094 9.703892 ATATTTCAGTGCTAGATACATCTGTTC 57.296 33.333 1.88 0.00 37.76 3.18
5531 8142 3.641906 CCTCCGTCCCATATTAGTTGTCT 59.358 47.826 0.00 0.00 0.00 3.41
5710 8321 5.279106 TTCTGCATAGAACAGCAATTGCTTT 60.279 36.000 30.07 24.35 42.40 3.51
5887 8510 5.945155 TGGAAAGGCGTTGTATAAACAATC 58.055 37.500 0.00 0.00 46.84 2.67
6131 8754 7.601130 AGCAAGTGTCGTTGATTTAGTACATAA 59.399 33.333 0.00 0.00 0.00 1.90
6284 8907 8.177013 CCAAAAGGCATTTTCATATTAAGCAAC 58.823 33.333 6.03 0.00 36.47 4.17
6427 9051 1.740585 AGTTGCAACGCACACTGTTTA 59.259 42.857 23.21 0.00 38.71 2.01
6626 9250 3.557595 CCAGTTCGCAGATAATCAGAACC 59.442 47.826 3.41 0.00 41.28 3.62
6675 9299 1.539065 CGGCAGCAGGTATAGAAGGTG 60.539 57.143 0.00 0.00 0.00 4.00
7194 9818 7.759489 TTTTCAACCTTAACAGATACAGCAT 57.241 32.000 0.00 0.00 0.00 3.79
7195 9819 7.759489 ATTTTCAACCTTAACAGATACAGCA 57.241 32.000 0.00 0.00 0.00 4.41
7532 10210 3.070018 AGAAGAGTTTTCATCACTGCCG 58.930 45.455 0.00 0.00 0.00 5.69
7555 10233 1.198637 GCTTGAAGCCTGTTACAGCTG 59.801 52.381 13.48 13.48 34.48 4.24
7595 10273 6.724441 TCTTCTGAACATCAAACCTCTACCTA 59.276 38.462 0.00 0.00 0.00 3.08
7779 10830 8.253810 TCAGCTCTATAAGATTCCCGATTAATG 58.746 37.037 0.00 0.00 0.00 1.90
7844 11300 0.693622 TAAAACCCAGGACATGCGGA 59.306 50.000 0.00 0.00 0.00 5.54
7956 11412 1.208535 ACACCAAAACACTCACGGAGA 59.791 47.619 7.76 0.00 33.32 3.71
7963 11419 5.402270 GCATTGTCATAACACCAAAACACTC 59.598 40.000 0.00 0.00 34.35 3.51
8002 11458 0.242017 CAGTGCTGCCAAACTAAGCC 59.758 55.000 0.00 0.00 36.05 4.35
8003 11459 0.954452 ACAGTGCTGCCAAACTAAGC 59.046 50.000 0.00 0.00 37.46 3.09
8004 11460 3.715628 AAACAGTGCTGCCAAACTAAG 57.284 42.857 0.00 0.00 0.00 2.18
8005 11461 4.081972 TCAAAAACAGTGCTGCCAAACTAA 60.082 37.500 0.00 0.00 0.00 2.24
8006 11462 3.445450 TCAAAAACAGTGCTGCCAAACTA 59.555 39.130 0.00 0.00 0.00 2.24
8007 11463 2.233431 TCAAAAACAGTGCTGCCAAACT 59.767 40.909 0.00 0.00 0.00 2.66
8008 11464 2.615869 TCAAAAACAGTGCTGCCAAAC 58.384 42.857 0.00 0.00 0.00 2.93
8009 11465 3.325293 TTCAAAAACAGTGCTGCCAAA 57.675 38.095 0.00 0.00 0.00 3.28
8010 11466 3.325293 TTTCAAAAACAGTGCTGCCAA 57.675 38.095 0.00 0.00 0.00 4.52
8011 11467 3.325293 TTTTCAAAAACAGTGCTGCCA 57.675 38.095 0.00 0.00 0.00 4.92
8029 11485 7.176589 TGAGGTTTTGGATTACTGTGTTTTT 57.823 32.000 0.00 0.00 0.00 1.94
8030 11486 6.682861 GCTGAGGTTTTGGATTACTGTGTTTT 60.683 38.462 0.00 0.00 0.00 2.43
8031 11487 5.221244 GCTGAGGTTTTGGATTACTGTGTTT 60.221 40.000 0.00 0.00 0.00 2.83
8032 11488 4.278419 GCTGAGGTTTTGGATTACTGTGTT 59.722 41.667 0.00 0.00 0.00 3.32
8033 11489 3.821033 GCTGAGGTTTTGGATTACTGTGT 59.179 43.478 0.00 0.00 0.00 3.72
8034 11490 4.074970 AGCTGAGGTTTTGGATTACTGTG 58.925 43.478 0.00 0.00 0.00 3.66
8035 11491 4.373156 AGCTGAGGTTTTGGATTACTGT 57.627 40.909 0.00 0.00 0.00 3.55
8036 11492 5.712152 AAAGCTGAGGTTTTGGATTACTG 57.288 39.130 3.44 0.00 28.33 2.74
8037 11493 7.833285 TTAAAAGCTGAGGTTTTGGATTACT 57.167 32.000 27.00 5.89 42.08 2.24
8038 11494 8.925700 CATTTAAAAGCTGAGGTTTTGGATTAC 58.074 33.333 27.00 0.00 42.08 1.89
8039 11495 7.602265 GCATTTAAAAGCTGAGGTTTTGGATTA 59.398 33.333 27.00 8.58 42.08 1.75
8040 11496 6.427853 GCATTTAAAAGCTGAGGTTTTGGATT 59.572 34.615 27.00 12.31 42.08 3.01
8041 11497 5.934043 GCATTTAAAAGCTGAGGTTTTGGAT 59.066 36.000 27.00 18.50 42.08 3.41
8042 11498 5.163364 TGCATTTAAAAGCTGAGGTTTTGGA 60.163 36.000 27.00 17.33 42.08 3.53
8043 11499 5.055812 TGCATTTAAAAGCTGAGGTTTTGG 58.944 37.500 27.00 16.37 42.08 3.28
8044 11500 6.347888 CCATGCATTTAAAAGCTGAGGTTTTG 60.348 38.462 27.00 15.21 42.08 2.44
8045 11501 5.702209 CCATGCATTTAAAAGCTGAGGTTTT 59.298 36.000 23.46 23.46 43.90 2.43
8046 11502 5.240121 CCATGCATTTAAAAGCTGAGGTTT 58.760 37.500 15.69 3.44 34.60 3.27
8047 11503 4.322953 CCCATGCATTTAAAAGCTGAGGTT 60.323 41.667 15.69 0.00 0.00 3.50
8048 11504 3.196254 CCCATGCATTTAAAAGCTGAGGT 59.804 43.478 15.69 0.00 0.00 3.85
8049 11505 3.788937 CCCATGCATTTAAAAGCTGAGG 58.211 45.455 15.69 13.39 0.00 3.86
8050 11506 3.192466 GCCCATGCATTTAAAAGCTGAG 58.808 45.455 15.69 6.25 37.47 3.35
8051 11507 2.566279 TGCCCATGCATTTAAAAGCTGA 59.434 40.909 15.69 0.00 44.23 4.26
8052 11508 2.975266 TGCCCATGCATTTAAAAGCTG 58.025 42.857 15.69 11.03 44.23 4.24
8057 11513 8.315938 GAAGTATTCGTTGCCCATGCATTTAAA 61.316 37.037 0.00 0.00 41.02 1.52
8058 11514 6.899258 GAAGTATTCGTTGCCCATGCATTTAA 60.899 38.462 0.00 0.00 41.02 1.52
8059 11515 5.449862 GAAGTATTCGTTGCCCATGCATTTA 60.450 40.000 0.00 0.00 41.02 1.40
8060 11516 4.677779 GAAGTATTCGTTGCCCATGCATTT 60.678 41.667 0.00 0.00 41.02 2.32
8061 11517 3.181487 GAAGTATTCGTTGCCCATGCATT 60.181 43.478 0.00 0.00 41.02 3.56
8062 11518 2.358898 GAAGTATTCGTTGCCCATGCAT 59.641 45.455 0.00 0.00 41.02 3.96
8063 11519 1.742831 GAAGTATTCGTTGCCCATGCA 59.257 47.619 0.00 0.00 40.07 3.96
8064 11520 2.475200 GAAGTATTCGTTGCCCATGC 57.525 50.000 0.00 0.00 34.17 4.06
8094 11550 4.714308 TGAAAACTGAGGAAAACCATGGTT 59.286 37.500 24.86 24.86 40.45 3.67
8095 11551 4.099419 GTGAAAACTGAGGAAAACCATGGT 59.901 41.667 13.00 13.00 0.00 3.55
8096 11552 4.099266 TGTGAAAACTGAGGAAAACCATGG 59.901 41.667 11.19 11.19 0.00 3.66
8097 11553 5.261209 TGTGAAAACTGAGGAAAACCATG 57.739 39.130 0.00 0.00 0.00 3.66
8098 11554 5.930837 TTGTGAAAACTGAGGAAAACCAT 57.069 34.783 0.00 0.00 0.00 3.55
8099 11555 5.930837 ATTGTGAAAACTGAGGAAAACCA 57.069 34.783 0.00 0.00 0.00 3.67
8100 11556 6.183360 TGGTATTGTGAAAACTGAGGAAAACC 60.183 38.462 0.00 0.00 0.00 3.27
8101 11557 6.695713 GTGGTATTGTGAAAACTGAGGAAAAC 59.304 38.462 0.00 0.00 0.00 2.43
8102 11558 6.183360 GGTGGTATTGTGAAAACTGAGGAAAA 60.183 38.462 0.00 0.00 0.00 2.29
8103 11559 5.300792 GGTGGTATTGTGAAAACTGAGGAAA 59.699 40.000 0.00 0.00 0.00 3.13
8104 11560 4.825085 GGTGGTATTGTGAAAACTGAGGAA 59.175 41.667 0.00 0.00 0.00 3.36
8105 11561 4.394729 GGTGGTATTGTGAAAACTGAGGA 58.605 43.478 0.00 0.00 0.00 3.71
8106 11562 3.188460 CGGTGGTATTGTGAAAACTGAGG 59.812 47.826 0.00 0.00 0.00 3.86
8107 11563 4.062293 TCGGTGGTATTGTGAAAACTGAG 58.938 43.478 0.00 0.00 0.00 3.35
8108 11564 4.074627 TCGGTGGTATTGTGAAAACTGA 57.925 40.909 0.00 0.00 0.00 3.41
8109 11565 4.454161 TCATCGGTGGTATTGTGAAAACTG 59.546 41.667 0.00 0.00 0.00 3.16
8110 11566 4.647611 TCATCGGTGGTATTGTGAAAACT 58.352 39.130 0.00 0.00 0.00 2.66
8111 11567 4.454504 ACTCATCGGTGGTATTGTGAAAAC 59.545 41.667 0.00 0.00 0.00 2.43
8112 11568 4.647611 ACTCATCGGTGGTATTGTGAAAA 58.352 39.130 0.00 0.00 0.00 2.29
8113 11569 4.280436 ACTCATCGGTGGTATTGTGAAA 57.720 40.909 0.00 0.00 0.00 2.69
8114 11570 3.973206 ACTCATCGGTGGTATTGTGAA 57.027 42.857 0.00 0.00 0.00 3.18
8115 11571 3.973206 AACTCATCGGTGGTATTGTGA 57.027 42.857 0.00 0.00 0.00 3.58
8116 11572 3.126858 CCAAACTCATCGGTGGTATTGTG 59.873 47.826 0.00 0.00 0.00 3.33
8117 11573 3.343617 CCAAACTCATCGGTGGTATTGT 58.656 45.455 0.00 0.00 0.00 2.71
8118 11574 2.097466 GCCAAACTCATCGGTGGTATTG 59.903 50.000 0.00 0.00 33.43 1.90
8119 11575 2.290641 TGCCAAACTCATCGGTGGTATT 60.291 45.455 0.00 0.00 33.43 1.89
8120 11576 1.280710 TGCCAAACTCATCGGTGGTAT 59.719 47.619 0.00 0.00 33.43 2.73
8121 11577 0.687920 TGCCAAACTCATCGGTGGTA 59.312 50.000 0.00 0.00 33.43 3.25
8122 11578 0.179004 TTGCCAAACTCATCGGTGGT 60.179 50.000 0.00 0.00 33.43 4.16
8123 11579 0.240945 GTTGCCAAACTCATCGGTGG 59.759 55.000 0.00 0.00 33.22 4.61
8124 11580 1.069022 CAGTTGCCAAACTCATCGGTG 60.069 52.381 0.00 0.00 45.07 4.94
8125 11581 1.202758 TCAGTTGCCAAACTCATCGGT 60.203 47.619 0.00 0.00 45.07 4.69
8126 11582 1.522668 TCAGTTGCCAAACTCATCGG 58.477 50.000 0.00 0.00 45.07 4.18
8127 11583 2.485426 ACATCAGTTGCCAAACTCATCG 59.515 45.455 0.00 0.00 45.07 3.84
8128 11584 4.510038 AACATCAGTTGCCAAACTCATC 57.490 40.909 0.00 0.00 45.07 2.92
8129 11585 4.341806 TCAAACATCAGTTGCCAAACTCAT 59.658 37.500 0.00 0.00 45.07 2.90
8130 11586 3.698539 TCAAACATCAGTTGCCAAACTCA 59.301 39.130 0.00 0.00 45.07 3.41
8131 11587 4.044426 GTCAAACATCAGTTGCCAAACTC 58.956 43.478 0.00 0.00 45.07 3.01
8133 11589 4.044426 GAGTCAAACATCAGTTGCCAAAC 58.956 43.478 0.00 0.00 38.17 2.93
8134 11590 3.243035 CGAGTCAAACATCAGTTGCCAAA 60.243 43.478 0.00 0.00 38.17 3.28
8135 11591 2.290367 CGAGTCAAACATCAGTTGCCAA 59.710 45.455 0.00 0.00 38.17 4.52
8136 11592 1.872952 CGAGTCAAACATCAGTTGCCA 59.127 47.619 0.00 0.00 38.17 4.92
8137 11593 1.400242 GCGAGTCAAACATCAGTTGCC 60.400 52.381 0.00 0.00 38.17 4.52
8138 11594 1.532868 AGCGAGTCAAACATCAGTTGC 59.467 47.619 0.00 0.00 38.17 4.17
8139 11595 3.179010 CAGCGAGTCAAACATCAGTTG 57.821 47.619 0.00 0.00 38.17 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.