Multiple sequence alignment - TraesCS7D01G288900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G288900 chr7D 100.000 4133 0 0 2870 7002 326725999 326721867 0.000000e+00 7633.0
1 TraesCS7D01G288900 chr7D 100.000 2554 0 0 1 2554 326728868 326726315 0.000000e+00 4717.0
2 TraesCS7D01G288900 chr7D 88.387 155 16 2 2212 2365 162241529 162241376 1.200000e-42 185.0
3 TraesCS7D01G288900 chr7D 94.872 117 6 0 1 117 140766900 140767016 4.310000e-42 183.0
4 TraesCS7D01G288900 chr7D 91.729 133 10 1 1 132 412152213 412152345 4.310000e-42 183.0
5 TraesCS7D01G288900 chr7D 95.745 47 2 0 5622 5668 506679540 506679494 7.530000e-10 76.8
6 TraesCS7D01G288900 chr7D 88.333 60 5 2 5610 5668 8879451 8879509 3.500000e-08 71.3
7 TraesCS7D01G288900 chr7A 97.998 2847 47 3 2926 5770 376610636 376613474 0.000000e+00 4933.0
8 TraesCS7D01G288900 chr7A 95.310 2303 60 17 269 2551 376608321 376610595 0.000000e+00 3611.0
9 TraesCS7D01G288900 chr7A 93.732 1021 26 11 5759 6763 376618318 376619316 0.000000e+00 1496.0
10 TraesCS7D01G288900 chr7A 87.773 229 13 6 6789 7002 620170155 620169927 3.240000e-63 254.0
11 TraesCS7D01G288900 chr7A 91.729 133 9 2 1 132 105475461 105475330 4.310000e-42 183.0
12 TraesCS7D01G288900 chr7A 83.226 155 24 2 2212 2365 163366602 163366449 2.630000e-29 141.0
13 TraesCS7D01G288900 chrUn 96.262 2140 55 15 423 2553 349953501 349955624 0.000000e+00 3485.0
14 TraesCS7D01G288900 chrUn 96.217 2141 55 15 423 2553 85547240 85545116 0.000000e+00 3482.0
15 TraesCS7D01G288900 chrUn 96.225 1245 28 11 423 1659 186247471 186248704 0.000000e+00 2021.0
16 TraesCS7D01G288900 chrUn 96.225 1245 28 10 423 1659 362108881 362107648 0.000000e+00 2021.0
17 TraesCS7D01G288900 chrUn 97.000 800 22 2 2887 3685 85544737 85543939 0.000000e+00 1343.0
18 TraesCS7D01G288900 chrUn 97.000 800 22 2 2887 3685 361521648 361522446 0.000000e+00 1343.0
19 TraesCS7D01G288900 chrUn 100.000 401 0 0 3817 4217 478647746 478648146 0.000000e+00 741.0
20 TraesCS7D01G288900 chrUn 96.742 399 12 1 1883 2280 478883082 478882684 0.000000e+00 664.0
21 TraesCS7D01G288900 chrUn 92.683 205 5 2 6443 6638 85543948 85543745 3.200000e-73 287.0
22 TraesCS7D01G288900 chrUn 92.683 205 5 2 6443 6638 361522437 361522640 3.200000e-73 287.0
23 TraesCS7D01G288900 chrUn 96.875 96 3 0 334 429 186247242 186247337 2.020000e-35 161.0
24 TraesCS7D01G288900 chrUn 97.590 83 2 0 347 429 85547457 85547375 7.320000e-30 143.0
25 TraesCS7D01G288900 chrUn 97.590 83 2 0 347 429 362109098 362109016 7.320000e-30 143.0
26 TraesCS7D01G288900 chrUn 92.000 50 3 1 1618 1667 85546527 85546479 1.260000e-07 69.4
27 TraesCS7D01G288900 chrUn 92.000 50 3 1 1615 1664 186248181 186248229 1.260000e-07 69.4
28 TraesCS7D01G288900 chrUn 92.000 50 3 1 1615 1664 349954211 349954259 1.260000e-07 69.4
29 TraesCS7D01G288900 chrUn 92.000 50 3 1 1618 1667 362108168 362108120 1.260000e-07 69.4
30 TraesCS7D01G288900 chr6A 90.217 644 51 8 4996 5630 607810394 607809754 0.000000e+00 830.0
31 TraesCS7D01G288900 chr2D 84.563 732 79 18 5669 6376 31994158 31994879 0.000000e+00 695.0
32 TraesCS7D01G288900 chr2D 87.862 552 52 9 4589 5128 31992989 31993537 9.910000e-178 634.0
33 TraesCS7D01G288900 chr2D 86.550 513 55 8 5126 5630 31993651 31994157 2.850000e-153 553.0
34 TraesCS7D01G288900 chr2D 93.701 127 7 1 1 127 145734974 145734849 9.270000e-44 189.0
35 TraesCS7D01G288900 chr2D 80.000 120 20 4 3494 3610 318917832 318917714 1.250000e-12 86.1
36 TraesCS7D01G288900 chr2D 90.000 60 5 1 5610 5668 428556114 428556173 7.530000e-10 76.8
37 TraesCS7D01G288900 chr5A 88.544 419 36 6 5219 5626 451706927 451706510 1.360000e-136 497.0
38 TraesCS7D01G288900 chr5B 85.451 488 51 12 5119 5598 412329448 412328973 2.270000e-134 490.0
39 TraesCS7D01G288900 chr5B 84.496 258 27 7 5018 5272 412237997 412237750 7.020000e-60 243.0
40 TraesCS7D01G288900 chr5B 85.417 192 17 6 4840 5020 412238258 412238067 9.270000e-44 189.0
41 TraesCS7D01G288900 chr6B 88.327 257 15 5 6761 7002 560966303 560966047 1.910000e-75 294.0
42 TraesCS7D01G288900 chr6B 80.132 151 13 12 6761 6903 588166954 588167095 5.780000e-16 97.1
43 TraesCS7D01G288900 chr6B 80.165 121 14 10 2088 2202 494154967 494154851 1.620000e-11 82.4
44 TraesCS7D01G288900 chr6B 92.593 54 3 1 5616 5668 359864621 359864674 7.530000e-10 76.8
45 TraesCS7D01G288900 chr3D 87.170 265 11 10 6761 7002 11079375 11079111 5.350000e-71 279.0
46 TraesCS7D01G288900 chr3D 78.008 241 41 10 2130 2361 365160116 365160353 2.630000e-29 141.0
47 TraesCS7D01G288900 chr3D 92.453 53 4 0 5616 5668 326567549 326567601 7.530000e-10 76.8
48 TraesCS7D01G288900 chr2B 80.645 279 40 8 1 269 257072799 257072525 3.310000e-48 204.0
49 TraesCS7D01G288900 chr2B 83.486 109 17 1 3473 3580 387707686 387707578 4.470000e-17 100.0
50 TraesCS7D01G288900 chr2B 81.967 122 10 9 6761 6872 651614894 651614775 7.480000e-15 93.5
51 TraesCS7D01G288900 chr5D 93.939 132 6 2 3 134 532338250 532338379 1.540000e-46 198.0
52 TraesCS7D01G288900 chr5D 80.345 290 32 7 1 268 69986004 69985718 5.540000e-46 196.0
53 TraesCS7D01G288900 chr5D 97.826 46 0 1 5628 5672 246300879 246300834 2.090000e-10 78.7
54 TraesCS7D01G288900 chr7B 92.308 130 10 0 1 130 517096653 517096524 1.200000e-42 185.0
55 TraesCS7D01G288900 chr7B 89.394 132 12 2 2234 2364 124552214 124552084 1.560000e-36 165.0
56 TraesCS7D01G288900 chr7B 83.471 121 9 8 6761 6872 467007104 467006986 1.240000e-17 102.0
57 TraesCS7D01G288900 chr7B 88.889 63 2 4 5606 5668 650217493 650217436 9.740000e-09 73.1
58 TraesCS7D01G288900 chr6D 90.977 133 10 2 1 132 292077535 292077404 2.010000e-40 178.0
59 TraesCS7D01G288900 chr1A 86.458 96 9 4 6761 6853 50702953 50703047 1.240000e-17 102.0
60 TraesCS7D01G288900 chr3A 83.471 121 6 10 6761 6872 416184980 416184865 4.470000e-17 100.0
61 TraesCS7D01G288900 chr1B 80.405 148 13 11 6761 6902 685683525 685683388 1.610000e-16 99.0
62 TraesCS7D01G288900 chr2A 84.536 97 8 6 2076 2169 540629622 540629714 9.670000e-14 89.8
63 TraesCS7D01G288900 chr2A 93.182 44 1 2 3549 3590 411943088 411943131 5.860000e-06 63.9
64 TraesCS7D01G288900 chr4A 81.416 113 14 7 2088 2196 521622609 521622500 1.250000e-12 86.1
65 TraesCS7D01G288900 chr4A 78.030 132 16 11 3473 3595 666434134 666434261 3.500000e-08 71.3
66 TraesCS7D01G288900 chr3B 81.250 112 14 7 2089 2196 200512958 200513066 4.500000e-12 84.2
67 TraesCS7D01G288900 chr3B 80.165 121 15 9 2088 2202 710059688 710059805 1.620000e-11 82.4
68 TraesCS7D01G288900 chr3B 89.831 59 2 3 5612 5668 178267878 178267934 9.740000e-09 73.1
69 TraesCS7D01G288900 chr1D 94.444 36 1 1 3485 3519 353551651 353551686 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G288900 chr7D 326721867 326728868 7001 True 6175.000000 7633 100.000000 1 7002 2 chr7D.!!$R3 7001
1 TraesCS7D01G288900 chr7A 376608321 376613474 5153 False 4272.000000 4933 96.654000 269 5770 2 chr7A.!!$F2 5501
2 TraesCS7D01G288900 chr7A 376618318 376619316 998 False 1496.000000 1496 93.732000 5759 6763 1 chr7A.!!$F1 1004
3 TraesCS7D01G288900 chrUn 349953501 349955624 2123 False 1777.200000 3485 94.131000 423 2553 2 chrUn.!!$F3 2130
4 TraesCS7D01G288900 chrUn 85543745 85547457 3712 True 1064.880000 3482 95.098000 347 6638 5 chrUn.!!$R2 6291
5 TraesCS7D01G288900 chrUn 361521648 361522640 992 False 815.000000 1343 94.841500 2887 6638 2 chrUn.!!$F4 3751
6 TraesCS7D01G288900 chrUn 186247242 186248704 1462 False 750.466667 2021 95.033333 334 1664 3 chrUn.!!$F2 1330
7 TraesCS7D01G288900 chrUn 362107648 362109098 1450 True 744.466667 2021 95.271667 347 1667 3 chrUn.!!$R3 1320
8 TraesCS7D01G288900 chr6A 607809754 607810394 640 True 830.000000 830 90.217000 4996 5630 1 chr6A.!!$R1 634
9 TraesCS7D01G288900 chr2D 31992989 31994879 1890 False 627.333333 695 86.325000 4589 6376 3 chr2D.!!$F2 1787
10 TraesCS7D01G288900 chr5B 412237750 412238258 508 True 216.000000 243 84.956500 4840 5272 2 chr5B.!!$R2 432

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.025898 GTCGGCGCTAATTTCGGTTC 59.974 55.000 7.64 0.0 0.00 3.62 F
186 187 0.034756 ACCGGCAAAAATTGGGCTTC 59.965 50.000 0.00 0.0 0.00 3.86 F
187 188 0.321346 CCGGCAAAAATTGGGCTTCT 59.679 50.000 0.00 0.0 0.00 2.85 F
250 251 0.336048 ATGACCTTGGGATGTTGGGG 59.664 55.000 0.00 0.0 0.00 4.96 F
252 253 0.611896 GACCTTGGGATGTTGGGGTG 60.612 60.000 0.00 0.0 0.00 4.61 F
2446 2614 0.178961 TCCCCGAGGATGATGACGAT 60.179 55.000 0.00 0.0 37.19 3.73 F
2473 2641 0.464373 GCGCCTCCTTGGATGATGAA 60.464 55.000 0.00 0.0 38.35 2.57 F
2528 2696 0.863799 CGACTATGTAGCGCCGTCTA 59.136 55.000 2.29 0.0 0.00 2.59 F
2934 3147 0.953960 GTTTGTGGCACCCTAGTCGG 60.954 60.000 16.26 0.0 0.00 4.79 F
3343 3556 1.196766 TGGATCCAGCAGTGACAGCT 61.197 55.000 11.44 0.0 44.62 4.24 F
3734 3949 1.202568 TGAACAGATAGCTGCCCATCG 60.203 52.381 8.16 0.0 46.26 3.84 F
4284 4499 3.495100 GGTATTGGAATGCTCTGGATCGT 60.495 47.826 0.00 0.0 0.00 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2062 2229 0.674895 CAAACTCCGGAGCCCTCAAG 60.675 60.000 31.56 10.5 0.00 3.02 R
2207 2375 1.123038 CAAATTTGCGCGAAGACTTGC 59.877 47.619 16.54 0.0 0.00 4.01 R
2292 2460 6.920210 GCCAAATATCTCAAAGAACTAATGCC 59.080 38.462 0.00 0.0 0.00 4.40 R
2316 2484 6.538381 CCTTGGTGGATTTTGGTAATTAATGC 59.462 38.462 0.00 0.0 38.35 3.56 R
2473 2641 0.606944 AGGAAGCGTCAGACTCGTCT 60.607 55.000 1.14 0.0 41.37 4.18 R
3454 3667 3.678056 ACACCAAAGCGATAGAAGACA 57.322 42.857 0.00 0.0 39.76 3.41 R
3626 3840 4.552674 TGTATCCTATTACTCCCTGCACA 58.447 43.478 0.00 0.0 0.00 4.57 R
3815 4030 4.823989 CACTTCTGACCTCAACTGGAAAAT 59.176 41.667 0.00 0.0 0.00 1.82 R
4284 4499 6.768483 TGAGTTATGGTTTCTGAACTGATCA 58.232 36.000 0.00 0.0 36.03 2.92 R
5656 6090 5.182001 TCAAAGAGCCAAAAGTGATCTAAGC 59.818 40.000 0.00 0.0 0.00 3.09 R
5830 6264 1.921243 TGGATGCGATCTACACGTTG 58.079 50.000 0.00 0.0 0.00 4.10 R
6260 6703 0.313672 TGGCGCCAACATTCAGAAAC 59.686 50.000 30.74 0.0 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.373116 GAAGGCTGACCGGCGACA 62.373 66.667 9.30 7.57 44.22 4.35
19 20 4.379243 AAGGCTGACCGGCGACAG 62.379 66.667 22.43 22.43 44.22 3.51
22 23 4.057428 GCTGACCGGCGACAGTCT 62.057 66.667 25.28 0.00 36.62 3.24
23 24 2.651361 CTGACCGGCGACAGTCTT 59.349 61.111 9.30 0.00 34.02 3.01
24 25 1.880894 CTGACCGGCGACAGTCTTA 59.119 57.895 9.30 0.00 34.02 2.10
25 26 0.179161 CTGACCGGCGACAGTCTTAG 60.179 60.000 9.30 0.00 34.02 2.18
26 27 1.516603 GACCGGCGACAGTCTTAGC 60.517 63.158 9.30 0.00 0.00 3.09
27 28 2.209064 GACCGGCGACAGTCTTAGCA 62.209 60.000 9.30 0.00 0.00 3.49
28 29 1.141881 CCGGCGACAGTCTTAGCAT 59.858 57.895 9.30 0.00 0.00 3.79
29 30 0.460284 CCGGCGACAGTCTTAGCATT 60.460 55.000 9.30 0.00 0.00 3.56
30 31 0.647410 CGGCGACAGTCTTAGCATTG 59.353 55.000 0.00 0.00 0.00 2.82
31 32 1.735700 CGGCGACAGTCTTAGCATTGA 60.736 52.381 0.00 0.00 0.00 2.57
32 33 2.555199 GGCGACAGTCTTAGCATTGAT 58.445 47.619 0.00 0.00 0.00 2.57
33 34 2.939103 GGCGACAGTCTTAGCATTGATT 59.061 45.455 0.00 0.00 0.00 2.57
34 35 3.001736 GGCGACAGTCTTAGCATTGATTC 59.998 47.826 0.00 0.00 0.00 2.52
35 36 3.001736 GCGACAGTCTTAGCATTGATTCC 59.998 47.826 0.00 0.00 0.00 3.01
36 37 3.557595 CGACAGTCTTAGCATTGATTCCC 59.442 47.826 0.00 0.00 0.00 3.97
37 38 3.879892 GACAGTCTTAGCATTGATTCCCC 59.120 47.826 0.00 0.00 0.00 4.81
38 39 2.874701 CAGTCTTAGCATTGATTCCCCG 59.125 50.000 0.00 0.00 0.00 5.73
39 40 1.604278 GTCTTAGCATTGATTCCCCGC 59.396 52.381 0.00 0.00 0.00 6.13
40 41 0.588252 CTTAGCATTGATTCCCCGCG 59.412 55.000 0.00 0.00 0.00 6.46
41 42 0.817634 TTAGCATTGATTCCCCGCGG 60.818 55.000 21.04 21.04 0.00 6.46
42 43 2.674563 TAGCATTGATTCCCCGCGGG 62.675 60.000 37.99 37.99 46.11 6.13
57 58 2.582436 GGGAAACCGAGGCGATGA 59.418 61.111 0.00 0.00 43.64 2.92
58 59 1.521681 GGGAAACCGAGGCGATGAG 60.522 63.158 0.00 0.00 43.64 2.90
59 60 1.521681 GGAAACCGAGGCGATGAGG 60.522 63.158 0.00 0.00 0.00 3.86
60 61 1.515954 GAAACCGAGGCGATGAGGA 59.484 57.895 0.00 0.00 0.00 3.71
61 62 0.806492 GAAACCGAGGCGATGAGGAC 60.806 60.000 0.00 0.00 0.00 3.85
62 63 2.558554 AAACCGAGGCGATGAGGACG 62.559 60.000 0.00 0.00 0.00 4.79
63 64 3.209812 CCGAGGCGATGAGGACGA 61.210 66.667 0.00 0.00 0.00 4.20
64 65 2.024871 CGAGGCGATGAGGACGAC 59.975 66.667 0.00 0.00 39.24 4.34
65 66 2.024871 GAGGCGATGAGGACGACG 59.975 66.667 0.00 0.00 44.04 5.12
66 67 2.437895 AGGCGATGAGGACGACGA 60.438 61.111 0.00 0.00 44.04 4.20
67 68 2.024871 GGCGATGAGGACGACGAG 59.975 66.667 0.00 0.00 0.00 4.18
68 69 2.024871 GCGATGAGGACGACGAGG 59.975 66.667 0.00 0.00 0.00 4.63
69 70 2.024871 CGATGAGGACGACGAGGC 59.975 66.667 0.00 0.00 0.00 4.70
70 71 2.024871 GATGAGGACGACGAGGCG 59.975 66.667 0.00 0.00 37.29 5.52
71 72 4.194720 ATGAGGACGACGAGGCGC 62.195 66.667 0.00 0.00 33.86 6.53
88 89 4.135153 CGGGGGTCGCTGACTCAG 62.135 72.222 10.08 1.21 34.18 3.35
113 114 4.020378 GCCGTTCTTTCGCGCCAA 62.020 61.111 0.00 0.00 0.00 4.52
114 115 2.634777 CCGTTCTTTCGCGCCAAA 59.365 55.556 0.00 0.00 0.00 3.28
115 116 1.009449 CCGTTCTTTCGCGCCAAAA 60.009 52.632 0.00 1.69 0.00 2.44
116 117 0.592754 CCGTTCTTTCGCGCCAAAAA 60.593 50.000 0.00 0.00 0.00 1.94
130 131 3.955775 AAAAACGACTACCCGGCG 58.044 55.556 0.00 0.00 0.00 6.46
131 132 2.319841 AAAAACGACTACCCGGCGC 61.320 57.895 0.00 0.00 0.00 6.53
154 155 4.111016 CTGTGTCCGTCGGCGCTA 62.111 66.667 2.51 0.00 36.67 4.26
155 156 3.620300 CTGTGTCCGTCGGCGCTAA 62.620 63.158 2.51 0.00 36.67 3.09
156 157 2.202703 GTGTCCGTCGGCGCTAAT 60.203 61.111 2.51 0.00 36.67 1.73
157 158 1.808390 GTGTCCGTCGGCGCTAATT 60.808 57.895 2.51 0.00 36.67 1.40
158 159 1.079681 TGTCCGTCGGCGCTAATTT 60.080 52.632 2.51 0.00 36.67 1.82
159 160 1.079875 TGTCCGTCGGCGCTAATTTC 61.080 55.000 2.51 0.00 36.67 2.17
160 161 1.874915 TCCGTCGGCGCTAATTTCG 60.875 57.895 2.51 0.17 36.67 3.46
161 162 2.618839 CGTCGGCGCTAATTTCGG 59.381 61.111 7.64 0.00 0.00 4.30
162 163 2.162754 CGTCGGCGCTAATTTCGGT 61.163 57.895 7.64 0.00 0.00 4.69
163 164 1.689352 CGTCGGCGCTAATTTCGGTT 61.689 55.000 7.64 0.00 0.00 4.44
164 165 0.025898 GTCGGCGCTAATTTCGGTTC 59.974 55.000 7.64 0.00 0.00 3.62
165 166 0.108520 TCGGCGCTAATTTCGGTTCT 60.109 50.000 7.64 0.00 0.00 3.01
166 167 1.134753 TCGGCGCTAATTTCGGTTCTA 59.865 47.619 7.64 0.00 0.00 2.10
167 168 1.928503 CGGCGCTAATTTCGGTTCTAA 59.071 47.619 7.64 0.00 0.00 2.10
168 169 2.285428 CGGCGCTAATTTCGGTTCTAAC 60.285 50.000 7.64 0.00 0.00 2.34
169 170 2.031314 GGCGCTAATTTCGGTTCTAACC 59.969 50.000 7.64 1.54 45.76 2.85
181 182 3.322369 GGTTCTAACCGGCAAAAATTGG 58.678 45.455 0.00 0.00 39.66 3.16
182 183 3.322369 GTTCTAACCGGCAAAAATTGGG 58.678 45.455 0.00 0.00 0.00 4.12
183 184 1.273886 TCTAACCGGCAAAAATTGGGC 59.726 47.619 0.00 0.00 0.00 5.36
184 185 1.275010 CTAACCGGCAAAAATTGGGCT 59.725 47.619 0.00 0.00 0.00 5.19
185 186 0.472044 AACCGGCAAAAATTGGGCTT 59.528 45.000 0.00 0.00 0.00 4.35
186 187 0.034756 ACCGGCAAAAATTGGGCTTC 59.965 50.000 0.00 0.00 0.00 3.86
187 188 0.321346 CCGGCAAAAATTGGGCTTCT 59.679 50.000 0.00 0.00 0.00 2.85
188 189 1.431496 CGGCAAAAATTGGGCTTCTG 58.569 50.000 0.00 0.00 0.00 3.02
189 190 1.000731 CGGCAAAAATTGGGCTTCTGA 59.999 47.619 0.00 0.00 0.00 3.27
190 191 2.691927 GGCAAAAATTGGGCTTCTGAG 58.308 47.619 0.00 0.00 0.00 3.35
191 192 2.299867 GGCAAAAATTGGGCTTCTGAGA 59.700 45.455 0.00 0.00 0.00 3.27
192 193 3.055602 GGCAAAAATTGGGCTTCTGAGAT 60.056 43.478 0.00 0.00 0.00 2.75
193 194 3.930848 GCAAAAATTGGGCTTCTGAGATG 59.069 43.478 0.00 0.00 0.00 2.90
194 195 4.562143 GCAAAAATTGGGCTTCTGAGATGT 60.562 41.667 0.00 0.00 0.00 3.06
195 196 4.796038 AAAATTGGGCTTCTGAGATGTG 57.204 40.909 0.00 0.00 0.00 3.21
196 197 3.726557 AATTGGGCTTCTGAGATGTGA 57.273 42.857 0.00 0.00 0.00 3.58
197 198 3.947612 ATTGGGCTTCTGAGATGTGAT 57.052 42.857 0.00 0.00 0.00 3.06
198 199 3.726557 TTGGGCTTCTGAGATGTGATT 57.273 42.857 0.00 0.00 0.00 2.57
199 200 2.995283 TGGGCTTCTGAGATGTGATTG 58.005 47.619 0.00 0.00 0.00 2.67
200 201 2.295885 GGGCTTCTGAGATGTGATTGG 58.704 52.381 0.00 0.00 0.00 3.16
201 202 2.092753 GGGCTTCTGAGATGTGATTGGA 60.093 50.000 0.00 0.00 0.00 3.53
202 203 2.941720 GGCTTCTGAGATGTGATTGGAC 59.058 50.000 0.00 0.00 0.00 4.02
203 204 2.941720 GCTTCTGAGATGTGATTGGACC 59.058 50.000 0.00 0.00 0.00 4.46
204 205 2.967599 TCTGAGATGTGATTGGACCG 57.032 50.000 0.00 0.00 0.00 4.79
205 206 2.456577 TCTGAGATGTGATTGGACCGA 58.543 47.619 0.00 0.00 0.00 4.69
206 207 2.166459 TCTGAGATGTGATTGGACCGAC 59.834 50.000 0.00 0.00 0.00 4.79
207 208 2.167281 CTGAGATGTGATTGGACCGACT 59.833 50.000 0.00 0.00 0.00 4.18
208 209 2.567169 TGAGATGTGATTGGACCGACTT 59.433 45.455 0.00 0.00 0.00 3.01
209 210 3.007940 TGAGATGTGATTGGACCGACTTT 59.992 43.478 0.00 0.00 0.00 2.66
210 211 4.003648 GAGATGTGATTGGACCGACTTTT 58.996 43.478 0.00 0.00 0.00 2.27
211 212 3.753272 AGATGTGATTGGACCGACTTTTG 59.247 43.478 0.00 0.00 0.00 2.44
212 213 2.226330 TGTGATTGGACCGACTTTTGG 58.774 47.619 0.00 0.00 0.00 3.28
213 214 1.539827 GTGATTGGACCGACTTTTGGG 59.460 52.381 0.00 0.00 0.00 4.12
214 215 0.526211 GATTGGACCGACTTTTGGGC 59.474 55.000 0.00 0.00 0.00 5.36
215 216 1.241315 ATTGGACCGACTTTTGGGCG 61.241 55.000 0.00 0.00 34.26 6.13
216 217 3.733960 GGACCGACTTTTGGGCGC 61.734 66.667 0.00 0.00 34.26 6.53
217 218 3.733960 GACCGACTTTTGGGCGCC 61.734 66.667 21.18 21.18 0.00 6.53
248 249 4.622260 AAAAATGACCTTGGGATGTTGG 57.378 40.909 0.00 0.00 0.00 3.77
249 250 2.236489 AATGACCTTGGGATGTTGGG 57.764 50.000 0.00 0.00 0.00 4.12
250 251 0.336048 ATGACCTTGGGATGTTGGGG 59.664 55.000 0.00 0.00 0.00 4.96
251 252 1.071314 TGACCTTGGGATGTTGGGGT 61.071 55.000 0.00 0.00 0.00 4.95
252 253 0.611896 GACCTTGGGATGTTGGGGTG 60.612 60.000 0.00 0.00 0.00 4.61
253 254 1.368268 ACCTTGGGATGTTGGGGTGT 61.368 55.000 0.00 0.00 0.00 4.16
254 255 0.899717 CCTTGGGATGTTGGGGTGTG 60.900 60.000 0.00 0.00 0.00 3.82
255 256 0.899717 CTTGGGATGTTGGGGTGTGG 60.900 60.000 0.00 0.00 0.00 4.17
256 257 2.679996 GGGATGTTGGGGTGTGGC 60.680 66.667 0.00 0.00 0.00 5.01
257 258 2.440599 GGATGTTGGGGTGTGGCT 59.559 61.111 0.00 0.00 0.00 4.75
258 259 1.978617 GGATGTTGGGGTGTGGCTG 60.979 63.158 0.00 0.00 0.00 4.85
259 260 2.601367 ATGTTGGGGTGTGGCTGC 60.601 61.111 0.00 0.00 0.00 5.25
260 261 3.449494 ATGTTGGGGTGTGGCTGCA 62.449 57.895 0.50 0.00 0.00 4.41
261 262 3.297620 GTTGGGGTGTGGCTGCAG 61.298 66.667 10.11 10.11 0.00 4.41
262 263 3.497115 TTGGGGTGTGGCTGCAGA 61.497 61.111 20.43 0.00 0.00 4.26
263 264 2.844195 TTGGGGTGTGGCTGCAGAT 61.844 57.895 20.43 0.00 0.00 2.90
264 265 2.753043 GGGGTGTGGCTGCAGATG 60.753 66.667 20.43 0.00 0.00 2.90
265 266 3.446570 GGGTGTGGCTGCAGATGC 61.447 66.667 20.43 2.06 42.50 3.91
266 267 2.360852 GGTGTGGCTGCAGATGCT 60.361 61.111 20.43 0.00 42.66 3.79
267 268 2.404995 GGTGTGGCTGCAGATGCTC 61.405 63.158 20.43 6.63 42.66 4.26
272 273 2.172372 GGCTGCAGATGCTCTCACG 61.172 63.158 20.43 0.00 42.66 4.35
283 284 4.515191 AGATGCTCTCACGTATTCTCTCTC 59.485 45.833 0.00 0.00 0.00 3.20
284 285 3.879998 TGCTCTCACGTATTCTCTCTCT 58.120 45.455 0.00 0.00 0.00 3.10
309 310 2.024176 ACTACGCCACAAAGCCTATG 57.976 50.000 0.00 0.00 0.00 2.23
467 615 1.266178 CTTCCATTTTCCACCCCCAC 58.734 55.000 0.00 0.00 0.00 4.61
887 1046 5.574830 TGTGGCGCAAAATTGACAAATATAC 59.425 36.000 10.83 0.00 0.00 1.47
888 1047 5.804979 GTGGCGCAAAATTGACAAATATACT 59.195 36.000 10.83 0.00 0.00 2.12
889 1048 6.020678 GTGGCGCAAAATTGACAAATATACTC 60.021 38.462 10.83 0.00 0.00 2.59
1039 1202 6.465894 GGAGTTATCCTGCTAATATGGGTGTT 60.466 42.308 0.00 0.00 42.94 3.32
1048 1211 4.499696 GCTAATATGGGTGTTGGATTGTGC 60.500 45.833 0.00 0.00 0.00 4.57
1576 1742 7.038154 CAAAGAACTTTGGTCCTATTTGTCA 57.962 36.000 16.57 0.00 44.47 3.58
1830 1996 3.452264 TGCATCACTAGAGCATTACTGGT 59.548 43.478 0.00 0.00 32.55 4.00
1939 2106 8.857694 TTGTATACTCAAACTTAGGGAAAAGG 57.142 34.615 4.17 0.00 0.00 3.11
2062 2229 7.368198 AGATATAGTGGAGAAAAGGAAGTCC 57.632 40.000 0.00 0.00 0.00 3.85
2316 2484 8.230472 AGGCATTAGTTCTTTGAGATATTTGG 57.770 34.615 0.00 0.00 0.00 3.28
2401 2569 2.496291 CCGCTAGACCCCTTACCGG 61.496 68.421 0.00 0.00 0.00 5.28
2446 2614 0.178961 TCCCCGAGGATGATGACGAT 60.179 55.000 0.00 0.00 37.19 3.73
2473 2641 0.464373 GCGCCTCCTTGGATGATGAA 60.464 55.000 0.00 0.00 38.35 2.57
2515 2683 1.000163 GATGATGACGGCCACGACTAT 60.000 52.381 2.24 0.00 44.60 2.12
2527 2695 1.094073 ACGACTATGTAGCGCCGTCT 61.094 55.000 2.29 0.00 0.00 4.18
2528 2696 0.863799 CGACTATGTAGCGCCGTCTA 59.136 55.000 2.29 0.00 0.00 2.59
2529 2697 1.463831 CGACTATGTAGCGCCGTCTAT 59.536 52.381 2.29 0.00 0.00 1.98
2530 2698 2.725145 CGACTATGTAGCGCCGTCTATG 60.725 54.545 2.29 0.00 0.00 2.23
2531 2699 2.483106 GACTATGTAGCGCCGTCTATGA 59.517 50.000 2.29 0.00 0.00 2.15
2912 3125 3.700970 TCCCTTCGCGGCACATCA 61.701 61.111 6.13 0.00 0.00 3.07
2934 3147 0.953960 GTTTGTGGCACCCTAGTCGG 60.954 60.000 16.26 0.00 0.00 4.79
2975 3188 3.900892 GCGCAGGCTACCTCGCTA 61.901 66.667 17.41 0.00 42.38 4.26
2977 3190 2.026301 GCAGGCTACCTCGCTACG 59.974 66.667 0.00 0.00 0.00 3.51
3343 3556 1.196766 TGGATCCAGCAGTGACAGCT 61.197 55.000 11.44 0.00 44.62 4.24
3454 3667 1.421646 CTGACACCTTTTCCCAGAGGT 59.578 52.381 0.00 0.00 46.99 3.85
3626 3840 9.785982 GAGATATTTAGGGAAGTAGAAGCAATT 57.214 33.333 0.00 0.00 0.00 2.32
3725 3940 9.319143 ACACTTACAGAATAATGAACAGATAGC 57.681 33.333 0.00 0.00 0.00 2.97
3734 3949 1.202568 TGAACAGATAGCTGCCCATCG 60.203 52.381 8.16 0.00 46.26 3.84
3803 4018 7.364522 TCAGTAATTGTTAGTGAAGCATGTC 57.635 36.000 5.09 0.00 41.34 3.06
3815 4030 6.862209 AGTGAAGCATGTCTTTTGTGTTTTA 58.138 32.000 0.00 0.00 34.56 1.52
4284 4499 3.495100 GGTATTGGAATGCTCTGGATCGT 60.495 47.826 0.00 0.00 0.00 3.73
4377 4592 6.754675 ACTTGTTCGGGTAAACAAAAGAATTG 59.245 34.615 4.04 0.00 45.67 2.32
4458 4673 4.041567 TGCTAGGAAGGAAACTGAACATCA 59.958 41.667 0.00 0.00 42.68 3.07
4460 4675 6.070251 TGCTAGGAAGGAAACTGAACATCATA 60.070 38.462 0.00 0.00 42.68 2.15
4825 5044 6.506538 AGCAAAATGGATCACTAGGAGTAT 57.493 37.500 0.00 0.00 0.00 2.12
4885 5104 7.414222 AATCATGTCATGCTTTCCATAGTTT 57.586 32.000 8.03 0.00 31.47 2.66
5656 6090 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
5657 6091 6.146347 CCCTCTGTAAAGAAATATAAGAGCGC 59.854 42.308 0.00 0.00 0.00 5.92
5723 6157 7.999679 TCTGTGTTCTCAAGATGTTTTGAAAT 58.000 30.769 0.00 0.00 36.69 2.17
5808 6242 4.143030 CGTACAAATGAGCAAAGGAGACAG 60.143 45.833 0.00 0.00 0.00 3.51
6108 6547 4.521256 GGCCACTTTGGACTGTGTAAATAA 59.479 41.667 0.00 0.00 44.12 1.40
6133 6572 5.367945 AAAAGTGTCCTCAACCTCACTAA 57.632 39.130 0.00 0.00 39.72 2.24
6207 6646 1.662686 AGGCCCTGAGAAGTAGCTTT 58.337 50.000 0.00 0.00 0.00 3.51
6260 6703 9.482627 GTAAGAATCTATGTAAGTTCCATCCTG 57.517 37.037 0.00 0.00 0.00 3.86
6281 6724 1.035923 TTCTGAATGTTGGCGCCAAA 58.964 45.000 41.60 29.90 37.70 3.28
6481 6937 8.328758 TGAGCCCCTAGGTTTCATAATATATTG 58.671 37.037 8.29 0.00 34.57 1.90
6641 7107 2.830370 GCTACCATGTGCCCAGGC 60.830 66.667 0.38 0.38 42.35 4.85
6661 7127 1.373622 TACACATGACACGTGGCCG 60.374 57.895 21.02 12.99 38.74 6.13
6678 7144 2.772739 CGAAGGAGCCTCAACCATG 58.227 57.895 0.00 0.00 0.00 3.66
6679 7145 0.745845 CGAAGGAGCCTCAACCATGG 60.746 60.000 11.19 11.19 0.00 3.66
6684 7150 3.499737 GCCTCAACCATGGCGTCG 61.500 66.667 13.04 0.00 39.71 5.12
6685 7151 2.264480 CCTCAACCATGGCGTCGA 59.736 61.111 13.04 2.06 0.00 4.20
6686 7152 2.100631 CCTCAACCATGGCGTCGAC 61.101 63.158 13.04 5.18 0.00 4.20
6714 7182 4.985413 AGTGATAAAATGACATGGTTGCG 58.015 39.130 0.00 0.00 0.00 4.85
6735 7203 2.031163 GCCTTGTCAGGAGCGTGT 59.969 61.111 0.00 0.00 44.19 4.49
6736 7204 2.320587 GCCTTGTCAGGAGCGTGTG 61.321 63.158 0.00 0.00 44.19 3.82
6744 7212 3.066760 TGTCAGGAGCGTGTGATATGTAG 59.933 47.826 0.00 0.00 0.00 2.74
6763 7231 2.624636 AGAACACGTCGACAAGGTTTT 58.375 42.857 17.16 8.55 0.00 2.43
6764 7232 3.004862 AGAACACGTCGACAAGGTTTTT 58.995 40.909 17.16 6.31 0.00 1.94
6781 7249 2.746279 TTTTGAGGGAAACAGCAGGA 57.254 45.000 0.00 0.00 0.00 3.86
6782 7250 1.981256 TTTGAGGGAAACAGCAGGAC 58.019 50.000 0.00 0.00 0.00 3.85
6783 7251 1.140312 TTGAGGGAAACAGCAGGACT 58.860 50.000 0.00 0.00 0.00 3.85
6784 7252 0.687354 TGAGGGAAACAGCAGGACTC 59.313 55.000 0.00 0.00 0.00 3.36
6785 7253 0.980423 GAGGGAAACAGCAGGACTCT 59.020 55.000 0.00 0.00 0.00 3.24
6786 7254 0.689623 AGGGAAACAGCAGGACTCTG 59.310 55.000 0.00 0.00 43.64 3.35
6795 7263 3.748863 CAGGACTCTGCTGCGTATT 57.251 52.632 0.00 0.00 33.86 1.89
6796 7264 2.015736 CAGGACTCTGCTGCGTATTT 57.984 50.000 0.00 0.00 33.86 1.40
6797 7265 2.350522 CAGGACTCTGCTGCGTATTTT 58.649 47.619 0.00 0.00 33.86 1.82
6798 7266 2.744202 CAGGACTCTGCTGCGTATTTTT 59.256 45.455 0.00 0.00 33.86 1.94
6799 7267 3.932710 CAGGACTCTGCTGCGTATTTTTA 59.067 43.478 0.00 0.00 33.86 1.52
6800 7268 4.572389 CAGGACTCTGCTGCGTATTTTTAT 59.428 41.667 0.00 0.00 33.86 1.40
6801 7269 5.065218 CAGGACTCTGCTGCGTATTTTTATT 59.935 40.000 0.00 0.00 33.86 1.40
6802 7270 6.257849 CAGGACTCTGCTGCGTATTTTTATTA 59.742 38.462 0.00 0.00 33.86 0.98
6803 7271 6.821665 AGGACTCTGCTGCGTATTTTTATTAA 59.178 34.615 0.00 0.00 0.00 1.40
6804 7272 7.499232 AGGACTCTGCTGCGTATTTTTATTAAT 59.501 33.333 0.00 0.00 0.00 1.40
6805 7273 8.129211 GGACTCTGCTGCGTATTTTTATTAATT 58.871 33.333 0.00 0.00 0.00 1.40
6806 7274 9.503427 GACTCTGCTGCGTATTTTTATTAATTT 57.497 29.630 0.00 0.00 0.00 1.82
6807 7275 9.855021 ACTCTGCTGCGTATTTTTATTAATTTT 57.145 25.926 0.00 0.00 0.00 1.82
6839 7307 9.403583 ACAAAATACAAAGGTCTCAAAAGTAGA 57.596 29.630 0.00 0.00 0.00 2.59
6868 7336 8.966069 AAGCTATACAAAAGAAGGAGAATACC 57.034 34.615 0.00 0.00 0.00 2.73
6869 7337 8.325477 AGCTATACAAAAGAAGGAGAATACCT 57.675 34.615 0.00 0.00 42.69 3.08
6870 7338 9.435570 AGCTATACAAAAGAAGGAGAATACCTA 57.564 33.333 0.00 0.00 39.62 3.08
6871 7339 9.699703 GCTATACAAAAGAAGGAGAATACCTAG 57.300 37.037 0.00 0.00 39.62 3.02
6874 7342 6.645306 ACAAAAGAAGGAGAATACCTAGAGC 58.355 40.000 0.00 0.00 39.62 4.09
6875 7343 5.523438 AAAGAAGGAGAATACCTAGAGCG 57.477 43.478 0.00 0.00 39.62 5.03
6876 7344 4.440826 AGAAGGAGAATACCTAGAGCGA 57.559 45.455 0.00 0.00 39.62 4.93
6877 7345 4.993028 AGAAGGAGAATACCTAGAGCGAT 58.007 43.478 0.00 0.00 39.62 4.58
6878 7346 6.129414 AGAAGGAGAATACCTAGAGCGATA 57.871 41.667 0.00 0.00 39.62 2.92
6879 7347 5.941647 AGAAGGAGAATACCTAGAGCGATAC 59.058 44.000 0.00 0.00 39.62 2.24
6880 7348 5.244189 AGGAGAATACCTAGAGCGATACA 57.756 43.478 0.00 0.00 38.65 2.29
6881 7349 5.632118 AGGAGAATACCTAGAGCGATACAA 58.368 41.667 0.00 0.00 38.65 2.41
6882 7350 5.474189 AGGAGAATACCTAGAGCGATACAAC 59.526 44.000 0.00 0.00 38.65 3.32
6883 7351 5.359716 AGAATACCTAGAGCGATACAACG 57.640 43.478 0.00 0.00 0.00 4.10
6884 7352 5.061853 AGAATACCTAGAGCGATACAACGA 58.938 41.667 0.00 0.00 35.09 3.85
6885 7353 4.745837 ATACCTAGAGCGATACAACGAC 57.254 45.455 0.00 0.00 35.09 4.34
6886 7354 1.329906 ACCTAGAGCGATACAACGACG 59.670 52.381 0.00 0.00 35.09 5.12
6887 7355 1.596260 CCTAGAGCGATACAACGACGA 59.404 52.381 0.00 0.00 35.09 4.20
6888 7356 2.599377 CCTAGAGCGATACAACGACGAC 60.599 54.545 0.00 0.00 35.09 4.34
6889 7357 0.800631 AGAGCGATACAACGACGACA 59.199 50.000 0.00 0.00 35.09 4.35
6890 7358 1.198408 AGAGCGATACAACGACGACAA 59.802 47.619 0.00 0.00 35.09 3.18
6891 7359 1.316735 GAGCGATACAACGACGACAAC 59.683 52.381 0.00 0.00 35.09 3.32
6892 7360 1.054574 GCGATACAACGACGACAACA 58.945 50.000 0.00 0.00 35.09 3.33
6893 7361 1.452773 GCGATACAACGACGACAACAA 59.547 47.619 0.00 0.00 35.09 2.83
6894 7362 2.716704 GCGATACAACGACGACAACAAC 60.717 50.000 0.00 0.00 35.09 3.32
6895 7363 2.468409 CGATACAACGACGACAACAACA 59.532 45.455 0.00 0.00 35.09 3.33
6896 7364 3.061073 CGATACAACGACGACAACAACAA 60.061 43.478 0.00 0.00 35.09 2.83
6897 7365 2.513964 ACAACGACGACAACAACAAC 57.486 45.000 0.00 0.00 0.00 3.32
6898 7366 1.799403 ACAACGACGACAACAACAACA 59.201 42.857 0.00 0.00 0.00 3.33
6899 7367 2.223611 ACAACGACGACAACAACAACAA 59.776 40.909 0.00 0.00 0.00 2.83
6900 7368 2.513964 ACGACGACAACAACAACAAC 57.486 45.000 0.00 0.00 0.00 3.32
6901 7369 1.799403 ACGACGACAACAACAACAACA 59.201 42.857 0.00 0.00 0.00 3.33
6902 7370 2.223611 ACGACGACAACAACAACAACAA 59.776 40.909 0.00 0.00 0.00 2.83
6903 7371 3.227147 CGACGACAACAACAACAACAAA 58.773 40.909 0.00 0.00 0.00 2.83
6904 7372 3.296943 CGACGACAACAACAACAACAAAG 59.703 43.478 0.00 0.00 0.00 2.77
6905 7373 4.468643 GACGACAACAACAACAACAAAGA 58.531 39.130 0.00 0.00 0.00 2.52
6906 7374 4.861210 ACGACAACAACAACAACAAAGAA 58.139 34.783 0.00 0.00 0.00 2.52
6907 7375 5.282510 ACGACAACAACAACAACAAAGAAA 58.717 33.333 0.00 0.00 0.00 2.52
6908 7376 5.923684 ACGACAACAACAACAACAAAGAAAT 59.076 32.000 0.00 0.00 0.00 2.17
6909 7377 7.085116 ACGACAACAACAACAACAAAGAAATA 58.915 30.769 0.00 0.00 0.00 1.40
6910 7378 7.595502 ACGACAACAACAACAACAAAGAAATAA 59.404 29.630 0.00 0.00 0.00 1.40
6911 7379 8.428536 CGACAACAACAACAACAAAGAAATAAA 58.571 29.630 0.00 0.00 0.00 1.40
6919 7387 9.541143 ACAACAACAAAGAAATAAAATACAGGG 57.459 29.630 0.00 0.00 0.00 4.45
6920 7388 8.987890 CAACAACAAAGAAATAAAATACAGGGG 58.012 33.333 0.00 0.00 0.00 4.79
6921 7389 7.158697 ACAACAAAGAAATAAAATACAGGGGC 58.841 34.615 0.00 0.00 0.00 5.80
6922 7390 7.016170 ACAACAAAGAAATAAAATACAGGGGCT 59.984 33.333 0.00 0.00 0.00 5.19
6923 7391 8.527810 CAACAAAGAAATAAAATACAGGGGCTA 58.472 33.333 0.00 0.00 0.00 3.93
6924 7392 8.293699 ACAAAGAAATAAAATACAGGGGCTAG 57.706 34.615 0.00 0.00 0.00 3.42
6925 7393 7.342026 ACAAAGAAATAAAATACAGGGGCTAGG 59.658 37.037 0.00 0.00 0.00 3.02
6926 7394 5.386060 AGAAATAAAATACAGGGGCTAGGC 58.614 41.667 8.00 8.00 0.00 3.93
6927 7395 4.806952 AATAAAATACAGGGGCTAGGCA 57.193 40.909 19.14 0.00 0.00 4.75
6928 7396 4.806952 ATAAAATACAGGGGCTAGGCAA 57.193 40.909 19.14 0.00 0.00 4.52
6929 7397 3.466395 AAAATACAGGGGCTAGGCAAA 57.534 42.857 19.14 0.00 0.00 3.68
6930 7398 2.736670 AATACAGGGGCTAGGCAAAG 57.263 50.000 19.14 8.94 0.00 2.77
6931 7399 0.846693 ATACAGGGGCTAGGCAAAGG 59.153 55.000 19.14 6.77 0.00 3.11
6932 7400 1.921869 TACAGGGGCTAGGCAAAGGC 61.922 60.000 19.14 5.06 41.17 4.35
6942 7410 3.369921 GCAAAGGCCTGAACCCAG 58.630 61.111 5.69 0.00 40.09 4.45
6943 7411 2.935740 GCAAAGGCCTGAACCCAGC 61.936 63.158 5.69 0.00 39.07 4.85
6944 7412 2.118294 AAAGGCCTGAACCCAGCC 59.882 61.111 5.69 0.00 39.07 4.85
6945 7413 3.529835 AAAGGCCTGAACCCAGCCC 62.530 63.158 5.69 0.00 38.15 5.19
6947 7415 4.432741 GGCCTGAACCCAGCCCTC 62.433 72.222 0.00 0.00 35.18 4.30
6948 7416 4.432741 GCCTGAACCCAGCCCTCC 62.433 72.222 0.00 0.00 39.07 4.30
6949 7417 2.935481 CCTGAACCCAGCCCTCCA 60.935 66.667 0.00 0.00 39.07 3.86
6950 7418 2.311854 CCTGAACCCAGCCCTCCAT 61.312 63.158 0.00 0.00 39.07 3.41
6951 7419 1.077212 CTGAACCCAGCCCTCCATG 60.077 63.158 0.00 0.00 33.07 3.66
6952 7420 1.852157 TGAACCCAGCCCTCCATGT 60.852 57.895 0.00 0.00 0.00 3.21
6953 7421 1.384191 GAACCCAGCCCTCCATGTT 59.616 57.895 0.00 0.00 0.00 2.71
6954 7422 0.967380 GAACCCAGCCCTCCATGTTG 60.967 60.000 0.00 0.00 0.00 3.33
6955 7423 1.729267 AACCCAGCCCTCCATGTTGT 61.729 55.000 0.00 0.00 0.00 3.32
6956 7424 1.679977 CCCAGCCCTCCATGTTGTG 60.680 63.158 0.00 0.00 0.00 3.33
6967 7435 3.508744 CCATGTTGTGGTATGCTTTCC 57.491 47.619 0.00 0.00 43.44 3.13
6968 7436 3.091545 CCATGTTGTGGTATGCTTTCCT 58.908 45.455 0.00 0.00 43.44 3.36
6969 7437 3.129287 CCATGTTGTGGTATGCTTTCCTC 59.871 47.826 0.00 0.00 43.44 3.71
6970 7438 3.788227 TGTTGTGGTATGCTTTCCTCT 57.212 42.857 0.00 0.00 0.00 3.69
6971 7439 4.098914 TGTTGTGGTATGCTTTCCTCTT 57.901 40.909 0.00 0.00 0.00 2.85
6972 7440 4.469657 TGTTGTGGTATGCTTTCCTCTTT 58.530 39.130 0.00 0.00 0.00 2.52
6973 7441 4.278170 TGTTGTGGTATGCTTTCCTCTTTG 59.722 41.667 0.00 0.00 0.00 2.77
6974 7442 2.819608 TGTGGTATGCTTTCCTCTTTGC 59.180 45.455 0.00 0.00 0.00 3.68
6975 7443 3.084786 GTGGTATGCTTTCCTCTTTGCT 58.915 45.455 0.00 0.00 0.00 3.91
6976 7444 3.127721 GTGGTATGCTTTCCTCTTTGCTC 59.872 47.826 0.00 0.00 0.00 4.26
6977 7445 3.009473 TGGTATGCTTTCCTCTTTGCTCT 59.991 43.478 0.00 0.00 0.00 4.09
6978 7446 3.376546 GGTATGCTTTCCTCTTTGCTCTG 59.623 47.826 0.00 0.00 0.00 3.35
6979 7447 2.645838 TGCTTTCCTCTTTGCTCTGT 57.354 45.000 0.00 0.00 0.00 3.41
6980 7448 2.224606 TGCTTTCCTCTTTGCTCTGTG 58.775 47.619 0.00 0.00 0.00 3.66
6981 7449 2.158769 TGCTTTCCTCTTTGCTCTGTGA 60.159 45.455 0.00 0.00 0.00 3.58
6982 7450 2.880890 GCTTTCCTCTTTGCTCTGTGAA 59.119 45.455 0.00 0.00 0.00 3.18
6983 7451 3.304324 GCTTTCCTCTTTGCTCTGTGAAC 60.304 47.826 0.00 0.00 0.00 3.18
6984 7452 2.550830 TCCTCTTTGCTCTGTGAACC 57.449 50.000 0.00 0.00 0.00 3.62
6985 7453 1.768275 TCCTCTTTGCTCTGTGAACCA 59.232 47.619 0.00 0.00 0.00 3.67
6986 7454 2.172505 TCCTCTTTGCTCTGTGAACCAA 59.827 45.455 0.00 0.00 0.00 3.67
6987 7455 2.291741 CCTCTTTGCTCTGTGAACCAAC 59.708 50.000 0.00 0.00 0.00 3.77
6988 7456 2.291741 CTCTTTGCTCTGTGAACCAACC 59.708 50.000 0.00 0.00 0.00 3.77
6989 7457 2.023673 CTTTGCTCTGTGAACCAACCA 58.976 47.619 0.00 0.00 0.00 3.67
6990 7458 1.388547 TTGCTCTGTGAACCAACCAC 58.611 50.000 0.00 0.00 35.23 4.16
6991 7459 0.546122 TGCTCTGTGAACCAACCACT 59.454 50.000 0.00 0.00 35.66 4.00
6992 7460 1.064758 TGCTCTGTGAACCAACCACTT 60.065 47.619 0.00 0.00 35.66 3.16
6993 7461 1.334869 GCTCTGTGAACCAACCACTTG 59.665 52.381 0.00 0.00 35.66 3.16
6994 7462 2.917933 CTCTGTGAACCAACCACTTGA 58.082 47.619 0.00 0.00 35.66 3.02
6995 7463 2.874701 CTCTGTGAACCAACCACTTGAG 59.125 50.000 0.00 0.00 35.66 3.02
6996 7464 1.334869 CTGTGAACCAACCACTTGAGC 59.665 52.381 0.00 0.00 35.66 4.26
6997 7465 1.064758 TGTGAACCAACCACTTGAGCT 60.065 47.619 0.00 0.00 35.66 4.09
6998 7466 1.604278 GTGAACCAACCACTTGAGCTC 59.396 52.381 6.82 6.82 0.00 4.09
6999 7467 1.490490 TGAACCAACCACTTGAGCTCT 59.510 47.619 16.19 0.00 0.00 4.09
7000 7468 2.092429 TGAACCAACCACTTGAGCTCTT 60.092 45.455 16.19 0.00 0.00 2.85
7001 7469 2.262423 ACCAACCACTTGAGCTCTTC 57.738 50.000 16.19 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.373116 TGTCGCCGGTCAGCCTTC 62.373 66.667 1.90 0.00 0.00 3.46
2 3 4.379243 CTGTCGCCGGTCAGCCTT 62.379 66.667 1.90 0.00 0.00 4.35
8 9 1.516603 GCTAAGACTGTCGCCGGTC 60.517 63.158 1.90 0.00 45.71 4.79
9 10 1.605058 ATGCTAAGACTGTCGCCGGT 61.605 55.000 1.90 0.00 0.00 5.28
10 11 0.460284 AATGCTAAGACTGTCGCCGG 60.460 55.000 0.00 0.00 0.00 6.13
11 12 0.647410 CAATGCTAAGACTGTCGCCG 59.353 55.000 1.52 0.00 0.00 6.46
12 13 2.010145 TCAATGCTAAGACTGTCGCC 57.990 50.000 1.52 0.00 0.00 5.54
13 14 3.001736 GGAATCAATGCTAAGACTGTCGC 59.998 47.826 1.52 0.68 0.00 5.19
14 15 3.557595 GGGAATCAATGCTAAGACTGTCG 59.442 47.826 1.52 0.00 0.00 4.35
15 16 3.879892 GGGGAATCAATGCTAAGACTGTC 59.120 47.826 0.00 0.00 0.00 3.51
16 17 3.682718 CGGGGAATCAATGCTAAGACTGT 60.683 47.826 0.00 0.00 0.00 3.55
17 18 2.874701 CGGGGAATCAATGCTAAGACTG 59.125 50.000 0.00 0.00 0.00 3.51
18 19 2.746472 GCGGGGAATCAATGCTAAGACT 60.746 50.000 0.00 0.00 0.00 3.24
19 20 1.604278 GCGGGGAATCAATGCTAAGAC 59.396 52.381 0.00 0.00 0.00 3.01
20 21 1.810031 CGCGGGGAATCAATGCTAAGA 60.810 52.381 0.00 0.00 0.00 2.10
21 22 0.588252 CGCGGGGAATCAATGCTAAG 59.412 55.000 0.00 0.00 0.00 2.18
22 23 0.817634 CCGCGGGGAATCAATGCTAA 60.818 55.000 20.10 0.00 34.06 3.09
23 24 1.227823 CCGCGGGGAATCAATGCTA 60.228 57.895 20.10 0.00 34.06 3.49
24 25 2.516930 CCGCGGGGAATCAATGCT 60.517 61.111 20.10 0.00 34.06 3.79
40 41 1.521681 CTCATCGCCTCGGTTTCCC 60.522 63.158 0.00 0.00 0.00 3.97
41 42 1.521681 CCTCATCGCCTCGGTTTCC 60.522 63.158 0.00 0.00 0.00 3.13
42 43 0.806492 GTCCTCATCGCCTCGGTTTC 60.806 60.000 0.00 0.00 0.00 2.78
43 44 1.218316 GTCCTCATCGCCTCGGTTT 59.782 57.895 0.00 0.00 0.00 3.27
44 45 2.893398 GTCCTCATCGCCTCGGTT 59.107 61.111 0.00 0.00 0.00 4.44
45 46 3.518998 CGTCCTCATCGCCTCGGT 61.519 66.667 0.00 0.00 0.00 4.69
46 47 3.209812 TCGTCCTCATCGCCTCGG 61.210 66.667 0.00 0.00 0.00 4.63
47 48 2.024871 GTCGTCCTCATCGCCTCG 59.975 66.667 0.00 0.00 0.00 4.63
48 49 2.024871 CGTCGTCCTCATCGCCTC 59.975 66.667 0.00 0.00 0.00 4.70
49 50 2.437895 TCGTCGTCCTCATCGCCT 60.438 61.111 0.00 0.00 0.00 5.52
50 51 2.024871 CTCGTCGTCCTCATCGCC 59.975 66.667 0.00 0.00 0.00 5.54
51 52 2.024871 CCTCGTCGTCCTCATCGC 59.975 66.667 0.00 0.00 0.00 4.58
52 53 2.024871 GCCTCGTCGTCCTCATCG 59.975 66.667 0.00 0.00 0.00 3.84
53 54 2.024871 CGCCTCGTCGTCCTCATC 59.975 66.667 0.00 0.00 0.00 2.92
54 55 4.194720 GCGCCTCGTCGTCCTCAT 62.195 66.667 0.00 0.00 0.00 2.90
71 72 4.135153 CTGAGTCAGCGACCCCCG 62.135 72.222 7.33 0.00 42.21 5.73
97 98 0.592754 TTTTTGGCGCGAAAGAACGG 60.593 50.000 17.08 0.00 0.00 4.44
98 99 2.861375 TTTTTGGCGCGAAAGAACG 58.139 47.368 17.08 0.00 0.00 3.95
113 114 2.319841 GCGCCGGGTAGTCGTTTTT 61.320 57.895 2.18 0.00 0.00 1.94
114 115 2.739671 GCGCCGGGTAGTCGTTTT 60.740 61.111 2.18 0.00 0.00 2.43
137 138 2.884087 ATTAGCGCCGACGGACACAG 62.884 60.000 20.50 3.73 40.57 3.66
138 139 2.495366 AATTAGCGCCGACGGACACA 62.495 55.000 20.50 0.00 40.57 3.72
139 140 1.356527 AAATTAGCGCCGACGGACAC 61.357 55.000 20.50 5.52 40.57 3.67
140 141 1.079681 AAATTAGCGCCGACGGACA 60.080 52.632 20.50 0.00 40.57 4.02
141 142 1.634753 GAAATTAGCGCCGACGGAC 59.365 57.895 20.50 8.83 40.57 4.79
142 143 1.874915 CGAAATTAGCGCCGACGGA 60.875 57.895 20.50 0.00 40.57 4.69
143 144 2.618839 CGAAATTAGCGCCGACGG 59.381 61.111 10.29 10.29 40.57 4.79
144 145 1.689352 AACCGAAATTAGCGCCGACG 61.689 55.000 2.29 1.69 44.07 5.12
145 146 0.025898 GAACCGAAATTAGCGCCGAC 59.974 55.000 2.29 0.00 0.00 4.79
146 147 0.108520 AGAACCGAAATTAGCGCCGA 60.109 50.000 2.29 0.00 0.00 5.54
147 148 1.563111 TAGAACCGAAATTAGCGCCG 58.437 50.000 2.29 0.00 0.00 6.46
148 149 2.031314 GGTTAGAACCGAAATTAGCGCC 59.969 50.000 2.29 0.00 39.66 6.53
149 150 3.314763 GGTTAGAACCGAAATTAGCGC 57.685 47.619 0.00 0.00 39.66 5.92
160 161 3.322369 CCAATTTTTGCCGGTTAGAACC 58.678 45.455 1.90 0.99 45.76 3.62
161 162 3.322369 CCCAATTTTTGCCGGTTAGAAC 58.678 45.455 1.90 0.00 0.00 3.01
162 163 2.289133 GCCCAATTTTTGCCGGTTAGAA 60.289 45.455 1.90 0.00 0.00 2.10
163 164 1.273886 GCCCAATTTTTGCCGGTTAGA 59.726 47.619 1.90 0.00 0.00 2.10
164 165 1.275010 AGCCCAATTTTTGCCGGTTAG 59.725 47.619 1.90 0.00 0.00 2.34
165 166 1.343069 AGCCCAATTTTTGCCGGTTA 58.657 45.000 1.90 0.00 0.00 2.85
166 167 0.472044 AAGCCCAATTTTTGCCGGTT 59.528 45.000 1.90 0.00 0.00 4.44
167 168 0.034756 GAAGCCCAATTTTTGCCGGT 59.965 50.000 1.90 0.00 0.00 5.28
168 169 0.321346 AGAAGCCCAATTTTTGCCGG 59.679 50.000 0.00 0.00 0.00 6.13
169 170 1.000731 TCAGAAGCCCAATTTTTGCCG 59.999 47.619 0.00 0.00 0.00 5.69
170 171 2.299867 TCTCAGAAGCCCAATTTTTGCC 59.700 45.455 0.00 0.00 0.00 4.52
171 172 3.665745 TCTCAGAAGCCCAATTTTTGC 57.334 42.857 0.00 0.00 0.00 3.68
172 173 4.927425 CACATCTCAGAAGCCCAATTTTTG 59.073 41.667 0.00 0.00 0.00 2.44
173 174 4.834496 TCACATCTCAGAAGCCCAATTTTT 59.166 37.500 0.00 0.00 0.00 1.94
174 175 4.410099 TCACATCTCAGAAGCCCAATTTT 58.590 39.130 0.00 0.00 0.00 1.82
175 176 4.038271 TCACATCTCAGAAGCCCAATTT 57.962 40.909 0.00 0.00 0.00 1.82
176 177 3.726557 TCACATCTCAGAAGCCCAATT 57.273 42.857 0.00 0.00 0.00 2.32
177 178 3.947612 ATCACATCTCAGAAGCCCAAT 57.052 42.857 0.00 0.00 0.00 3.16
178 179 3.349927 CAATCACATCTCAGAAGCCCAA 58.650 45.455 0.00 0.00 0.00 4.12
179 180 2.356432 CCAATCACATCTCAGAAGCCCA 60.356 50.000 0.00 0.00 0.00 5.36
180 181 2.092753 TCCAATCACATCTCAGAAGCCC 60.093 50.000 0.00 0.00 0.00 5.19
181 182 2.941720 GTCCAATCACATCTCAGAAGCC 59.058 50.000 0.00 0.00 0.00 4.35
182 183 2.941720 GGTCCAATCACATCTCAGAAGC 59.058 50.000 0.00 0.00 0.00 3.86
183 184 3.118992 TCGGTCCAATCACATCTCAGAAG 60.119 47.826 0.00 0.00 0.00 2.85
184 185 2.831526 TCGGTCCAATCACATCTCAGAA 59.168 45.455 0.00 0.00 0.00 3.02
185 186 2.166459 GTCGGTCCAATCACATCTCAGA 59.834 50.000 0.00 0.00 0.00 3.27
186 187 2.167281 AGTCGGTCCAATCACATCTCAG 59.833 50.000 0.00 0.00 0.00 3.35
187 188 2.179427 AGTCGGTCCAATCACATCTCA 58.821 47.619 0.00 0.00 0.00 3.27
188 189 2.969628 AGTCGGTCCAATCACATCTC 57.030 50.000 0.00 0.00 0.00 2.75
189 190 3.703001 AAAGTCGGTCCAATCACATCT 57.297 42.857 0.00 0.00 0.00 2.90
190 191 3.119849 CCAAAAGTCGGTCCAATCACATC 60.120 47.826 0.00 0.00 0.00 3.06
191 192 2.819608 CCAAAAGTCGGTCCAATCACAT 59.180 45.455 0.00 0.00 0.00 3.21
192 193 2.226330 CCAAAAGTCGGTCCAATCACA 58.774 47.619 0.00 0.00 0.00 3.58
193 194 1.539827 CCCAAAAGTCGGTCCAATCAC 59.460 52.381 0.00 0.00 0.00 3.06
194 195 1.904287 CCCAAAAGTCGGTCCAATCA 58.096 50.000 0.00 0.00 0.00 2.57
195 196 0.526211 GCCCAAAAGTCGGTCCAATC 59.474 55.000 0.00 0.00 0.00 2.67
196 197 1.241315 CGCCCAAAAGTCGGTCCAAT 61.241 55.000 0.00 0.00 0.00 3.16
197 198 1.894756 CGCCCAAAAGTCGGTCCAA 60.895 57.895 0.00 0.00 0.00 3.53
198 199 2.281208 CGCCCAAAAGTCGGTCCA 60.281 61.111 0.00 0.00 0.00 4.02
199 200 3.733960 GCGCCCAAAAGTCGGTCC 61.734 66.667 0.00 0.00 0.00 4.46
200 201 3.733960 GGCGCCCAAAAGTCGGTC 61.734 66.667 18.11 0.00 0.00 4.79
227 228 3.327464 CCCAACATCCCAAGGTCATTTTT 59.673 43.478 0.00 0.00 0.00 1.94
228 229 2.905736 CCCAACATCCCAAGGTCATTTT 59.094 45.455 0.00 0.00 0.00 1.82
229 230 2.539302 CCCAACATCCCAAGGTCATTT 58.461 47.619 0.00 0.00 0.00 2.32
230 231 1.273211 CCCCAACATCCCAAGGTCATT 60.273 52.381 0.00 0.00 0.00 2.57
231 232 0.336048 CCCCAACATCCCAAGGTCAT 59.664 55.000 0.00 0.00 0.00 3.06
232 233 1.071314 ACCCCAACATCCCAAGGTCA 61.071 55.000 0.00 0.00 0.00 4.02
233 234 0.611896 CACCCCAACATCCCAAGGTC 60.612 60.000 0.00 0.00 0.00 3.85
234 235 1.368268 ACACCCCAACATCCCAAGGT 61.368 55.000 0.00 0.00 0.00 3.50
235 236 0.899717 CACACCCCAACATCCCAAGG 60.900 60.000 0.00 0.00 0.00 3.61
236 237 0.899717 CCACACCCCAACATCCCAAG 60.900 60.000 0.00 0.00 0.00 3.61
237 238 1.154921 CCACACCCCAACATCCCAA 59.845 57.895 0.00 0.00 0.00 4.12
238 239 2.850290 CCACACCCCAACATCCCA 59.150 61.111 0.00 0.00 0.00 4.37
239 240 2.679996 GCCACACCCCAACATCCC 60.680 66.667 0.00 0.00 0.00 3.85
240 241 1.978617 CAGCCACACCCCAACATCC 60.979 63.158 0.00 0.00 0.00 3.51
241 242 2.639327 GCAGCCACACCCCAACATC 61.639 63.158 0.00 0.00 0.00 3.06
242 243 2.601367 GCAGCCACACCCCAACAT 60.601 61.111 0.00 0.00 0.00 2.71
243 244 4.134785 TGCAGCCACACCCCAACA 62.135 61.111 0.00 0.00 0.00 3.33
244 245 3.297620 CTGCAGCCACACCCCAAC 61.298 66.667 0.00 0.00 0.00 3.77
245 246 2.844195 ATCTGCAGCCACACCCCAA 61.844 57.895 9.47 0.00 0.00 4.12
246 247 3.259314 ATCTGCAGCCACACCCCA 61.259 61.111 9.47 0.00 0.00 4.96
247 248 2.753043 CATCTGCAGCCACACCCC 60.753 66.667 9.47 0.00 0.00 4.95
248 249 3.446570 GCATCTGCAGCCACACCC 61.447 66.667 9.47 0.00 41.59 4.61
249 250 2.360852 AGCATCTGCAGCCACACC 60.361 61.111 9.47 0.00 45.16 4.16
250 251 3.185155 GAGCATCTGCAGCCACAC 58.815 61.111 9.47 0.00 45.16 3.82
261 262 4.515191 AGAGAGAGAATACGTGAGAGCATC 59.485 45.833 0.00 0.00 0.00 3.91
262 263 4.460263 AGAGAGAGAATACGTGAGAGCAT 58.540 43.478 0.00 0.00 0.00 3.79
263 264 3.879998 AGAGAGAGAATACGTGAGAGCA 58.120 45.455 0.00 0.00 0.00 4.26
264 265 4.551990 CGAAGAGAGAGAATACGTGAGAGC 60.552 50.000 0.00 0.00 0.00 4.09
265 266 4.806775 TCGAAGAGAGAGAATACGTGAGAG 59.193 45.833 0.00 0.00 0.00 3.20
266 267 4.756502 TCGAAGAGAGAGAATACGTGAGA 58.243 43.478 0.00 0.00 0.00 3.27
267 268 5.472320 TTCGAAGAGAGAGAATACGTGAG 57.528 43.478 0.00 0.00 38.43 3.51
272 273 5.678047 GCGTAGTTTCGAAGAGAGAGAATAC 59.322 44.000 0.00 0.00 38.43 1.89
283 284 2.661979 GCTTTGTGGCGTAGTTTCGAAG 60.662 50.000 0.00 0.00 0.00 3.79
284 285 1.262151 GCTTTGTGGCGTAGTTTCGAA 59.738 47.619 0.00 0.00 0.00 3.71
391 397 1.328986 GAGAGCAGAAAATGTAGCGGC 59.671 52.381 0.00 0.00 0.00 6.53
493 641 4.045104 CACGAGCGCAACTTTATAGAGAT 58.955 43.478 11.47 0.00 0.00 2.75
497 645 3.991605 AACACGAGCGCAACTTTATAG 57.008 42.857 11.47 0.00 0.00 1.31
1039 1202 2.387445 GCAGTACGCGCACAATCCA 61.387 57.895 12.80 0.00 0.00 3.41
1048 1211 2.350192 TCCATGTTAATTGCAGTACGCG 59.650 45.455 3.53 3.53 46.97 6.01
1174 1338 7.981789 TCTGTAAATTAATCTAGCACAGTGGAG 59.018 37.037 1.84 0.00 34.83 3.86
1357 1523 7.596248 CCATCAATGTGCCTACATAATAAAAGC 59.404 37.037 0.00 0.00 46.54 3.51
1939 2106 4.287766 ACCCTCCTTTCTACACAATGTC 57.712 45.455 0.00 0.00 0.00 3.06
2062 2229 0.674895 CAAACTCCGGAGCCCTCAAG 60.675 60.000 31.56 10.50 0.00 3.02
2207 2375 1.123038 CAAATTTGCGCGAAGACTTGC 59.877 47.619 16.54 0.00 0.00 4.01
2292 2460 6.920210 GCCAAATATCTCAAAGAACTAATGCC 59.080 38.462 0.00 0.00 0.00 4.40
2316 2484 6.538381 CCTTGGTGGATTTTGGTAATTAATGC 59.462 38.462 0.00 0.00 38.35 3.56
2473 2641 0.606944 AGGAAGCGTCAGACTCGTCT 60.607 55.000 1.14 0.00 41.37 4.18
2515 2683 1.266989 CTCATCATAGACGGCGCTACA 59.733 52.381 6.90 0.81 0.00 2.74
2527 2695 0.969149 CCTGCTACCCGCTCATCATA 59.031 55.000 0.00 0.00 40.11 2.15
2528 2696 0.760567 TCCTGCTACCCGCTCATCAT 60.761 55.000 0.00 0.00 40.11 2.45
2529 2697 1.381191 TCCTGCTACCCGCTCATCA 60.381 57.895 0.00 0.00 40.11 3.07
2530 2698 1.068250 GTCCTGCTACCCGCTCATC 59.932 63.158 0.00 0.00 40.11 2.92
2531 2699 1.381872 AGTCCTGCTACCCGCTCAT 60.382 57.895 0.00 0.00 40.11 2.90
2869 3037 4.035792 TGACACCAAACACCAAATTAGACG 59.964 41.667 0.00 0.00 0.00 4.18
2870 3038 5.278604 GTGACACCAAACACCAAATTAGAC 58.721 41.667 0.00 0.00 0.00 2.59
2871 3039 4.035792 CGTGACACCAAACACCAAATTAGA 59.964 41.667 0.00 0.00 34.05 2.10
2872 3040 4.201970 ACGTGACACCAAACACCAAATTAG 60.202 41.667 0.00 0.00 34.05 1.73
2873 3041 3.695060 ACGTGACACCAAACACCAAATTA 59.305 39.130 0.00 0.00 34.05 1.40
2874 3042 2.494073 ACGTGACACCAAACACCAAATT 59.506 40.909 0.00 0.00 34.05 1.82
2875 3043 2.096248 ACGTGACACCAAACACCAAAT 58.904 42.857 0.00 0.00 34.05 2.32
2876 3044 1.469308 GACGTGACACCAAACACCAAA 59.531 47.619 0.00 0.00 34.05 3.28
2877 3045 1.088306 GACGTGACACCAAACACCAA 58.912 50.000 0.00 0.00 34.05 3.67
2878 3046 0.745128 GGACGTGACACCAAACACCA 60.745 55.000 0.00 0.00 34.05 4.17
2879 3047 1.441732 GGGACGTGACACCAAACACC 61.442 60.000 0.00 0.00 34.05 4.16
2880 3048 0.463116 AGGGACGTGACACCAAACAC 60.463 55.000 0.00 0.00 0.00 3.32
2881 3049 0.253610 AAGGGACGTGACACCAAACA 59.746 50.000 0.00 0.00 0.00 2.83
2882 3050 0.942252 GAAGGGACGTGACACCAAAC 59.058 55.000 0.00 0.00 0.00 2.93
2883 3051 0.531090 CGAAGGGACGTGACACCAAA 60.531 55.000 0.00 0.00 0.00 3.28
2884 3052 1.068417 CGAAGGGACGTGACACCAA 59.932 57.895 0.00 0.00 0.00 3.67
2885 3053 2.732016 CGAAGGGACGTGACACCA 59.268 61.111 0.00 0.00 0.00 4.17
2912 3125 2.514803 GACTAGGGTGCCACAAACAAT 58.485 47.619 0.00 0.00 0.00 2.71
2977 3190 1.442148 GAGGTGATCACGGCCCTAC 59.558 63.158 19.33 3.94 0.00 3.18
3454 3667 3.678056 ACACCAAAGCGATAGAAGACA 57.322 42.857 0.00 0.00 39.76 3.41
3626 3840 4.552674 TGTATCCTATTACTCCCTGCACA 58.447 43.478 0.00 0.00 0.00 4.57
3725 3940 6.436843 AAAAATTAGTTAGTCGATGGGCAG 57.563 37.500 0.00 0.00 0.00 4.85
3803 4018 8.603181 CCTCAACTGGAAAATAAAACACAAAAG 58.397 33.333 0.00 0.00 0.00 2.27
3815 4030 4.823989 CACTTCTGACCTCAACTGGAAAAT 59.176 41.667 0.00 0.00 0.00 1.82
4284 4499 6.768483 TGAGTTATGGTTTCTGAACTGATCA 58.232 36.000 0.00 0.00 36.03 2.92
5656 6090 5.182001 TCAAAGAGCCAAAAGTGATCTAAGC 59.818 40.000 0.00 0.00 0.00 3.09
5657 6091 6.808008 TCAAAGAGCCAAAAGTGATCTAAG 57.192 37.500 0.00 0.00 0.00 2.18
5665 6099 7.233348 TGAAATCCTTATCAAAGAGCCAAAAGT 59.767 33.333 0.00 0.00 34.37 2.66
5742 6176 2.102420 ACAGTTCACGACAATCCTCACA 59.898 45.455 0.00 0.00 0.00 3.58
5830 6264 1.921243 TGGATGCGATCTACACGTTG 58.079 50.000 0.00 0.00 0.00 4.10
6074 6513 2.161855 CAAAGTGGCCAGTCTATTGCA 58.838 47.619 15.03 0.00 0.00 4.08
6133 6572 2.747467 CGGACCAATCATCTCCATTGCT 60.747 50.000 0.00 0.00 30.94 3.91
6260 6703 0.313672 TGGCGCCAACATTCAGAAAC 59.686 50.000 30.74 0.00 0.00 2.78
6281 6724 0.625683 AATGAGGGCCCAGATGACCT 60.626 55.000 27.56 0.00 35.67 3.85
6326 6769 3.181431 ACAGTCCCAGCGATATAGTACCT 60.181 47.826 0.00 0.00 0.00 3.08
6425 6881 5.398603 TTTACATACCAATTGCAACCCAG 57.601 39.130 0.00 0.00 0.00 4.45
6481 6937 6.127310 CCTTGCATATAGTAGTATCTCCCACC 60.127 46.154 0.00 0.00 0.00 4.61
6641 7107 1.623081 GGCCACGTGTCATGTGTACG 61.623 60.000 21.04 14.28 42.98 3.67
6661 7127 3.181526 CCATGGTTGAGGCTCCTTC 57.818 57.895 12.86 2.15 0.00 3.46
6677 7143 1.299850 CACTCAACAGTCGACGCCA 60.300 57.895 10.46 0.00 0.00 5.69
6678 7144 0.388649 ATCACTCAACAGTCGACGCC 60.389 55.000 10.46 0.00 0.00 5.68
6679 7145 2.257974 TATCACTCAACAGTCGACGC 57.742 50.000 10.46 0.00 0.00 5.19
6680 7146 5.344933 TCATTTTATCACTCAACAGTCGACG 59.655 40.000 10.46 7.86 0.00 5.12
6681 7147 6.145534 TGTCATTTTATCACTCAACAGTCGAC 59.854 38.462 7.70 7.70 0.00 4.20
6682 7148 6.220201 TGTCATTTTATCACTCAACAGTCGA 58.780 36.000 0.00 0.00 0.00 4.20
6683 7149 6.466308 TGTCATTTTATCACTCAACAGTCG 57.534 37.500 0.00 0.00 0.00 4.18
6684 7150 7.094634 ACCATGTCATTTTATCACTCAACAGTC 60.095 37.037 0.00 0.00 0.00 3.51
6685 7151 6.716628 ACCATGTCATTTTATCACTCAACAGT 59.283 34.615 0.00 0.00 0.00 3.55
6686 7152 7.149569 ACCATGTCATTTTATCACTCAACAG 57.850 36.000 0.00 0.00 0.00 3.16
6714 7182 2.270527 GCTCCTGACAAGGCTCCC 59.729 66.667 0.00 0.00 44.11 4.30
6735 7203 4.950434 TGTCGACGTGTTCTACATATCA 57.050 40.909 11.62 0.00 0.00 2.15
6736 7204 4.733887 CCTTGTCGACGTGTTCTACATATC 59.266 45.833 11.62 0.00 30.39 1.63
6744 7212 3.394313 AAAAACCTTGTCGACGTGTTC 57.606 42.857 11.62 0.00 0.00 3.18
6763 7231 1.494721 AGTCCTGCTGTTTCCCTCAAA 59.505 47.619 0.00 0.00 0.00 2.69
6764 7232 1.072331 GAGTCCTGCTGTTTCCCTCAA 59.928 52.381 0.00 0.00 0.00 3.02
6765 7233 0.687354 GAGTCCTGCTGTTTCCCTCA 59.313 55.000 0.00 0.00 0.00 3.86
6766 7234 0.980423 AGAGTCCTGCTGTTTCCCTC 59.020 55.000 0.00 0.00 0.00 4.30
6767 7235 0.689623 CAGAGTCCTGCTGTTTCCCT 59.310 55.000 0.00 0.00 33.07 4.20
6768 7236 3.239861 CAGAGTCCTGCTGTTTCCC 57.760 57.895 0.00 0.00 33.07 3.97
6777 7245 2.015736 AAATACGCAGCAGAGTCCTG 57.984 50.000 0.00 0.00 43.22 3.86
6778 7246 2.770164 AAAATACGCAGCAGAGTCCT 57.230 45.000 0.00 0.00 0.00 3.85
6779 7247 5.485662 AATAAAAATACGCAGCAGAGTCC 57.514 39.130 0.00 0.00 0.00 3.85
6780 7248 9.503427 AAATTAATAAAAATACGCAGCAGAGTC 57.497 29.630 0.00 0.00 0.00 3.36
6781 7249 9.855021 AAAATTAATAAAAATACGCAGCAGAGT 57.145 25.926 0.00 0.00 0.00 3.24
6813 7281 9.403583 TCTACTTTTGAGACCTTTGTATTTTGT 57.596 29.630 0.00 0.00 0.00 2.83
6842 7310 9.397280 GGTATTCTCCTTCTTTTGTATAGCTTT 57.603 33.333 0.00 0.00 0.00 3.51
6843 7311 8.773216 AGGTATTCTCCTTCTTTTGTATAGCTT 58.227 33.333 0.00 0.00 33.52 3.74
6844 7312 8.325477 AGGTATTCTCCTTCTTTTGTATAGCT 57.675 34.615 0.00 0.00 33.52 3.32
6845 7313 9.699703 CTAGGTATTCTCCTTCTTTTGTATAGC 57.300 37.037 0.00 0.00 38.86 2.97
6848 7316 8.425703 GCTCTAGGTATTCTCCTTCTTTTGTAT 58.574 37.037 0.00 0.00 38.86 2.29
6849 7317 7.416438 CGCTCTAGGTATTCTCCTTCTTTTGTA 60.416 40.741 0.00 0.00 38.86 2.41
6850 7318 6.628398 CGCTCTAGGTATTCTCCTTCTTTTGT 60.628 42.308 0.00 0.00 38.86 2.83
6851 7319 5.751028 CGCTCTAGGTATTCTCCTTCTTTTG 59.249 44.000 0.00 0.00 38.86 2.44
6852 7320 5.657302 TCGCTCTAGGTATTCTCCTTCTTTT 59.343 40.000 0.00 0.00 38.86 2.27
6853 7321 5.202004 TCGCTCTAGGTATTCTCCTTCTTT 58.798 41.667 0.00 0.00 38.86 2.52
6854 7322 4.794334 TCGCTCTAGGTATTCTCCTTCTT 58.206 43.478 0.00 0.00 38.86 2.52
6855 7323 4.440826 TCGCTCTAGGTATTCTCCTTCT 57.559 45.455 0.00 0.00 38.86 2.85
6856 7324 5.706369 TGTATCGCTCTAGGTATTCTCCTTC 59.294 44.000 0.00 0.00 38.86 3.46
6857 7325 5.632118 TGTATCGCTCTAGGTATTCTCCTT 58.368 41.667 0.00 0.00 38.86 3.36
6858 7326 5.244189 TGTATCGCTCTAGGTATTCTCCT 57.756 43.478 0.00 0.00 41.20 3.69
6859 7327 5.617308 CGTTGTATCGCTCTAGGTATTCTCC 60.617 48.000 0.00 0.00 0.00 3.71
6860 7328 5.178996 TCGTTGTATCGCTCTAGGTATTCTC 59.821 44.000 0.00 0.00 0.00 2.87
6861 7329 5.049543 GTCGTTGTATCGCTCTAGGTATTCT 60.050 44.000 0.00 0.00 0.00 2.40
6862 7330 5.145759 GTCGTTGTATCGCTCTAGGTATTC 58.854 45.833 0.00 0.00 0.00 1.75
6863 7331 4.319333 CGTCGTTGTATCGCTCTAGGTATT 60.319 45.833 0.00 0.00 0.00 1.89
6864 7332 3.186001 CGTCGTTGTATCGCTCTAGGTAT 59.814 47.826 0.00 0.00 0.00 2.73
6865 7333 2.541346 CGTCGTTGTATCGCTCTAGGTA 59.459 50.000 0.00 0.00 0.00 3.08
6866 7334 1.329906 CGTCGTTGTATCGCTCTAGGT 59.670 52.381 0.00 0.00 0.00 3.08
6867 7335 1.596260 TCGTCGTTGTATCGCTCTAGG 59.404 52.381 0.00 0.00 0.00 3.02
6868 7336 2.030091 TGTCGTCGTTGTATCGCTCTAG 59.970 50.000 0.00 0.00 0.00 2.43
6869 7337 2.001872 TGTCGTCGTTGTATCGCTCTA 58.998 47.619 0.00 0.00 0.00 2.43
6870 7338 0.800631 TGTCGTCGTTGTATCGCTCT 59.199 50.000 0.00 0.00 0.00 4.09
6871 7339 1.316735 GTTGTCGTCGTTGTATCGCTC 59.683 52.381 0.00 0.00 0.00 5.03
6872 7340 1.334054 GTTGTCGTCGTTGTATCGCT 58.666 50.000 0.00 0.00 0.00 4.93
6873 7341 1.054574 TGTTGTCGTCGTTGTATCGC 58.945 50.000 0.00 0.00 0.00 4.58
6874 7342 2.468409 TGTTGTTGTCGTCGTTGTATCG 59.532 45.455 0.00 0.00 0.00 2.92
6875 7343 4.198584 GTTGTTGTTGTCGTCGTTGTATC 58.801 43.478 0.00 0.00 0.00 2.24
6876 7344 3.617706 TGTTGTTGTTGTCGTCGTTGTAT 59.382 39.130 0.00 0.00 0.00 2.29
6877 7345 2.991866 TGTTGTTGTTGTCGTCGTTGTA 59.008 40.909 0.00 0.00 0.00 2.41
6878 7346 1.799403 TGTTGTTGTTGTCGTCGTTGT 59.201 42.857 0.00 0.00 0.00 3.32
6879 7347 2.512289 TGTTGTTGTTGTCGTCGTTG 57.488 45.000 0.00 0.00 0.00 4.10
6880 7348 2.223611 TGTTGTTGTTGTTGTCGTCGTT 59.776 40.909 0.00 0.00 0.00 3.85
6881 7349 1.799403 TGTTGTTGTTGTTGTCGTCGT 59.201 42.857 0.00 0.00 0.00 4.34
6882 7350 2.512289 TGTTGTTGTTGTTGTCGTCG 57.488 45.000 0.00 0.00 0.00 5.12
6883 7351 4.468643 TCTTTGTTGTTGTTGTTGTCGTC 58.531 39.130 0.00 0.00 0.00 4.20
6884 7352 4.491234 TCTTTGTTGTTGTTGTTGTCGT 57.509 36.364 0.00 0.00 0.00 4.34
6885 7353 5.814314 TTTCTTTGTTGTTGTTGTTGTCG 57.186 34.783 0.00 0.00 0.00 4.35
6893 7361 9.541143 CCCTGTATTTTATTTCTTTGTTGTTGT 57.459 29.630 0.00 0.00 0.00 3.32
6894 7362 8.987890 CCCCTGTATTTTATTTCTTTGTTGTTG 58.012 33.333 0.00 0.00 0.00 3.33
6895 7363 7.659799 GCCCCTGTATTTTATTTCTTTGTTGTT 59.340 33.333 0.00 0.00 0.00 2.83
6896 7364 7.016170 AGCCCCTGTATTTTATTTCTTTGTTGT 59.984 33.333 0.00 0.00 0.00 3.32
6897 7365 7.386059 AGCCCCTGTATTTTATTTCTTTGTTG 58.614 34.615 0.00 0.00 0.00 3.33
6898 7366 7.553504 AGCCCCTGTATTTTATTTCTTTGTT 57.446 32.000 0.00 0.00 0.00 2.83
6899 7367 7.342026 CCTAGCCCCTGTATTTTATTTCTTTGT 59.658 37.037 0.00 0.00 0.00 2.83
6900 7368 7.684428 GCCTAGCCCCTGTATTTTATTTCTTTG 60.684 40.741 0.00 0.00 0.00 2.77
6901 7369 6.323996 GCCTAGCCCCTGTATTTTATTTCTTT 59.676 38.462 0.00 0.00 0.00 2.52
6902 7370 5.833667 GCCTAGCCCCTGTATTTTATTTCTT 59.166 40.000 0.00 0.00 0.00 2.52
6903 7371 5.103686 TGCCTAGCCCCTGTATTTTATTTCT 60.104 40.000 0.00 0.00 0.00 2.52
6904 7372 5.137551 TGCCTAGCCCCTGTATTTTATTTC 58.862 41.667 0.00 0.00 0.00 2.17
6905 7373 5.137412 TGCCTAGCCCCTGTATTTTATTT 57.863 39.130 0.00 0.00 0.00 1.40
6906 7374 4.806952 TGCCTAGCCCCTGTATTTTATT 57.193 40.909 0.00 0.00 0.00 1.40
6907 7375 4.806952 TTGCCTAGCCCCTGTATTTTAT 57.193 40.909 0.00 0.00 0.00 1.40
6908 7376 4.532834 CTTTGCCTAGCCCCTGTATTTTA 58.467 43.478 0.00 0.00 0.00 1.52
6909 7377 3.365472 CTTTGCCTAGCCCCTGTATTTT 58.635 45.455 0.00 0.00 0.00 1.82
6910 7378 2.358195 CCTTTGCCTAGCCCCTGTATTT 60.358 50.000 0.00 0.00 0.00 1.40
6911 7379 1.215423 CCTTTGCCTAGCCCCTGTATT 59.785 52.381 0.00 0.00 0.00 1.89
6912 7380 0.846693 CCTTTGCCTAGCCCCTGTAT 59.153 55.000 0.00 0.00 0.00 2.29
6913 7381 1.921869 GCCTTTGCCTAGCCCCTGTA 61.922 60.000 0.00 0.00 0.00 2.74
6914 7382 3.090765 CCTTTGCCTAGCCCCTGT 58.909 61.111 0.00 0.00 0.00 4.00
6915 7383 2.440980 GCCTTTGCCTAGCCCCTG 60.441 66.667 0.00 0.00 0.00 4.45
6925 7393 2.935740 GCTGGGTTCAGGCCTTTGC 61.936 63.158 0.00 0.00 41.19 3.68
6926 7394 3.369921 GCTGGGTTCAGGCCTTTG 58.630 61.111 0.00 0.00 41.19 2.77
6932 7400 2.311854 ATGGAGGGCTGGGTTCAGG 61.312 63.158 0.00 0.00 41.19 3.86
6933 7401 1.077212 CATGGAGGGCTGGGTTCAG 60.077 63.158 0.00 0.00 43.64 3.02
6934 7402 1.434513 AACATGGAGGGCTGGGTTCA 61.435 55.000 0.00 0.00 0.00 3.18
6935 7403 0.967380 CAACATGGAGGGCTGGGTTC 60.967 60.000 0.00 0.00 0.00 3.62
6936 7404 1.077265 CAACATGGAGGGCTGGGTT 59.923 57.895 0.00 0.00 0.00 4.11
6937 7405 2.162906 ACAACATGGAGGGCTGGGT 61.163 57.895 0.00 0.00 0.00 4.51
6938 7406 1.679977 CACAACATGGAGGGCTGGG 60.680 63.158 0.00 0.00 0.00 4.45
6939 7407 4.007457 CACAACATGGAGGGCTGG 57.993 61.111 0.00 0.00 0.00 4.85
6948 7416 4.012374 AGAGGAAAGCATACCACAACATG 58.988 43.478 0.00 0.00 0.00 3.21
6949 7417 4.307032 AGAGGAAAGCATACCACAACAT 57.693 40.909 0.00 0.00 0.00 2.71
6950 7418 3.788227 AGAGGAAAGCATACCACAACA 57.212 42.857 0.00 0.00 0.00 3.33
6951 7419 4.798574 CAAAGAGGAAAGCATACCACAAC 58.201 43.478 0.00 0.00 0.00 3.32
6952 7420 3.255642 GCAAAGAGGAAAGCATACCACAA 59.744 43.478 0.00 0.00 0.00 3.33
6953 7421 2.819608 GCAAAGAGGAAAGCATACCACA 59.180 45.455 0.00 0.00 0.00 4.17
6954 7422 3.084786 AGCAAAGAGGAAAGCATACCAC 58.915 45.455 0.00 0.00 0.00 4.16
6955 7423 3.009473 AGAGCAAAGAGGAAAGCATACCA 59.991 43.478 0.00 0.00 0.00 3.25
6956 7424 3.376546 CAGAGCAAAGAGGAAAGCATACC 59.623 47.826 0.00 0.00 0.00 2.73
6957 7425 4.006319 ACAGAGCAAAGAGGAAAGCATAC 58.994 43.478 0.00 0.00 0.00 2.39
6958 7426 4.005650 CACAGAGCAAAGAGGAAAGCATA 58.994 43.478 0.00 0.00 0.00 3.14
6959 7427 2.818432 CACAGAGCAAAGAGGAAAGCAT 59.182 45.455 0.00 0.00 0.00 3.79
6960 7428 2.158769 TCACAGAGCAAAGAGGAAAGCA 60.159 45.455 0.00 0.00 0.00 3.91
6961 7429 2.498167 TCACAGAGCAAAGAGGAAAGC 58.502 47.619 0.00 0.00 0.00 3.51
6962 7430 3.251972 GGTTCACAGAGCAAAGAGGAAAG 59.748 47.826 0.00 0.00 0.00 2.62
6963 7431 3.214328 GGTTCACAGAGCAAAGAGGAAA 58.786 45.455 0.00 0.00 0.00 3.13
6964 7432 2.172505 TGGTTCACAGAGCAAAGAGGAA 59.827 45.455 0.00 0.00 0.00 3.36
6965 7433 1.768275 TGGTTCACAGAGCAAAGAGGA 59.232 47.619 0.00 0.00 0.00 3.71
6966 7434 2.260844 TGGTTCACAGAGCAAAGAGG 57.739 50.000 0.00 0.00 0.00 3.69
6967 7435 2.291741 GGTTGGTTCACAGAGCAAAGAG 59.708 50.000 0.00 0.00 38.58 2.85
6968 7436 2.297701 GGTTGGTTCACAGAGCAAAGA 58.702 47.619 0.00 0.00 38.58 2.52
6969 7437 2.023673 TGGTTGGTTCACAGAGCAAAG 58.976 47.619 0.00 0.00 38.58 2.77
6970 7438 1.748493 GTGGTTGGTTCACAGAGCAAA 59.252 47.619 0.00 0.00 38.58 3.68
6971 7439 1.064758 AGTGGTTGGTTCACAGAGCAA 60.065 47.619 0.00 0.00 37.58 3.91
6972 7440 0.546122 AGTGGTTGGTTCACAGAGCA 59.454 50.000 0.00 0.00 37.58 4.26
6973 7441 1.334869 CAAGTGGTTGGTTCACAGAGC 59.665 52.381 0.00 0.00 37.58 4.09
6974 7442 2.874701 CTCAAGTGGTTGGTTCACAGAG 59.125 50.000 0.00 0.00 37.58 3.35
6975 7443 2.917933 CTCAAGTGGTTGGTTCACAGA 58.082 47.619 0.00 0.00 37.58 3.41
6976 7444 1.334869 GCTCAAGTGGTTGGTTCACAG 59.665 52.381 0.00 0.00 37.58 3.66
6977 7445 1.064758 AGCTCAAGTGGTTGGTTCACA 60.065 47.619 0.00 0.00 37.58 3.58
6978 7446 1.604278 GAGCTCAAGTGGTTGGTTCAC 59.396 52.381 9.40 0.00 34.09 3.18
6979 7447 1.490490 AGAGCTCAAGTGGTTGGTTCA 59.510 47.619 17.77 0.00 34.09 3.18
6980 7448 2.262423 AGAGCTCAAGTGGTTGGTTC 57.738 50.000 17.77 0.00 34.09 3.62
6981 7449 2.576615 GAAGAGCTCAAGTGGTTGGTT 58.423 47.619 17.77 0.00 34.09 3.67
6982 7450 2.262423 GAAGAGCTCAAGTGGTTGGT 57.738 50.000 17.77 0.00 34.09 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.