AutoCloner

Multiple sequence alignment - TraesCS7D01G288100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G288100	chr7D	100.000	5004	0	0	1	5004	318811122	318816125	0.000000e+00	9241.0
1	TraesCS7D01G288100	chr7D	96.380	442	14	1	4564	5003	318818274	318818715	0.000000e+00	726.0
2	TraesCS7D01G288100	chr7D	91.874	443	31	3	4564	5004	590609114	590608675	9.210000e-172	614.0
3	TraesCS7D01G288100	chr7D	100.000	92	0	0	4458	4549	318815666	318815757	2.400000e-38	171.0
4	TraesCS7D01G288100	chr7D	97.260	73	2	0	4477	4549	318818274	318818346	1.890000e-24	124.0
5	TraesCS7D01G288100	chr7D	97.260	73	2	0	4477	4549	590609114	590609042	1.890000e-24	124.0
6	TraesCS7D01G288100	chr7D	93.939	66	3	1	863	928	318811939	318812003	1.150000e-16	99.0
7	TraesCS7D01G288100	chr7D	93.939	66	3	1	818	882	318811984	318812049	1.150000e-16	99.0
8	TraesCS7D01G288100	chr7B	97.301	4112	94	9	1	4101	258900024	258904129	0.000000e+00	6962.0
9	TraesCS7D01G288100	chr7B	92.424	66	4	1	818	882	258900880	258900945	5.330000e-15	93.5
10	TraesCS7D01G288100	chr7A	97.429	3851	61	11	140	3979	342805776	342809599	0.000000e+00	6529.0
11	TraesCS7D01G288100	chr7A	95.000	140	7	0	1	140	342805316	342805455	2.350000e-53	220.0
12	TraesCS7D01G288100	chr7A	92.784	97	4	1	4008	4101	342809599	342809695	2.430000e-28	137.0
13	TraesCS7D01G288100	chr7A	95.890	73	3	0	4476	4548	19301378	19301306	8.800000e-23	119.0
14	TraesCS7D01G288100	chr7A	92.958	71	5	0	4479	4549	274487822	274487752	2.460000e-18	104.0
15	TraesCS7D01G288100	chr7A	91.667	72	6	0	4477	4548	75975816	75975745	3.190000e-17	100.0
16	TraesCS7D01G288100	chr7A	93.939	66	3	1	818	882	342806473	342806538	1.150000e-16	99.0
17	TraesCS7D01G288100	chr7A	90.278	72	7	0	4477	4548	75977390	75977319	1.480000e-15	95.3
18	TraesCS7D01G288100	chr7A	92.424	66	4	1	863	928	342806428	342806492	5.330000e-15	93.5
19	TraesCS7D01G288100	chr6D	96.614	443	13	1	4564	5004	238114361	238114803	0.000000e+00	734.0
20	TraesCS7D01G288100	chr6D	96.163	443	15	2	4564	5004	193728832	193729274	0.000000e+00	723.0
21	TraesCS7D01G288100	chr6D	95.937	443	16	1	4564	5004	193730479	193730921	0.000000e+00	717.0
22	TraesCS7D01G288100	chr6D	95.711	443	17	1	4564	5004	193733771	193734213	0.000000e+00	712.0
23	TraesCS7D01G288100	chr6D	95.455	440	18	1	4564	5001	193732123	193732562	0.000000e+00	701.0
24	TraesCS7D01G288100	chr6D	95.260	443	19	1	4564	5004	238116009	238116451	0.000000e+00	701.0
25	TraesCS7D01G288100	chr6D	95.067	446	19	2	4562	5004	193735416	193735861	0.000000e+00	699.0
26	TraesCS7D01G288100	chr2D	94.521	73	4	0	4477	4549	446272337	446272409	4.090000e-21	113.0
27	TraesCS7D01G288100	chrUn	88.462	78	9	0	573	650	300835032	300835109	1.480000e-15	95.3
28	TraesCS7D01G288100	chr4B	87.671	73	9	0	4477	4549	645241246	645241174	8.930000e-13	86.1
29	TraesCS7D01G288100	chr2A	86.667	75	10	0	576	650	709700554	709700480	3.210000e-12	84.2
30	TraesCS7D01G288100	chr1D	88.333	60	3	2	172	231	479482561	479482506	8.990000e-08	69.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G288100	chr7D	318811122	318816125	5003	False	9241.00	9241	100.0000	1	5004	1	chr7D.!!$F1	5003
1	TraesCS7D01G288100	chr7D	318811939	318818715	6776	False	243.80	726	96.3036	818	5003	5	chr7D.!!$F2	4185
2	TraesCS7D01G288100	chr7B	258900024	258904129	4105	False	3527.75	6962	94.8625	1	4101	2	chr7B.!!$F1	4100
3	TraesCS7D01G288100	chr7A	342805316	342809695	4379	False	1415.70	6529	94.3152	1	4101	5	chr7A.!!$F1	4100
4	TraesCS7D01G288100	chr6D	238114361	238116451	2090	False	717.50	734	95.9370	4564	5004	2	chr6D.!!$F2	440
5	TraesCS7D01G288100	chr6D	193728832	193735861	7029	False	710.40	723	95.6666	4562	5004	5	chr6D.!!$F1	442

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
116	117	0.378257	GGTAGCATGCATGTGAACGG	59.622	55.0	26.79	0.81	0.0	4.44	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
4482	4823	2.504244	CGTCACGAGGTTCGCTCC	60.504	66.667	0.0	0.0	45.12	4.7	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
98	99	3.049674	TTTTCCTGCTGCTCGCGG	61.050	61.111	6.13	0.00	44.89	6.46
116	117	0.378257	GGTAGCATGCATGTGAACGG	59.622	55.000	26.79	0.81	0.00	4.44
163	485	4.634703	AATCGGCCGGTGTGCACA	62.635	61.111	27.83	17.42	0.00	4.57
268	590	2.068519	CTGCGTGCACTCTTTGTATCA	58.931	47.619	16.19	0.00	0.00	2.15
293	615	6.183360	ACGACGTTTCATGGATATGTACTACA	60.183	38.462	0.00	0.00	35.73	2.74
348	670	2.046314	GGTGCATGCGGGTACTGT	60.046	61.111	14.09	0.00	36.83	3.55
352	674	1.079127	GCATGCGGGTACTGTGAGT	60.079	57.895	0.00	0.00	36.83	3.41
353	675	0.673644	GCATGCGGGTACTGTGAGTT	60.674	55.000	0.00	0.00	36.83	3.01
629	951	8.391106	GTTCTTTCTGTCAATATGAAAGCGTAT	58.609	33.333	9.11	0.00	43.51	3.06
4481	4822	5.062183	CATCGTTTCGACACATAACTGATGT	59.938	40.000	15.62	0.00	43.07	3.06
4490	4831	3.933155	CATAACTGATGTGGAGCGAAC	57.067	47.619	0.00	0.00	0.00	3.95
4491	4832	2.380084	TAACTGATGTGGAGCGAACC	57.620	50.000	0.00	0.00	0.00	3.62
4492	4833	0.687354	AACTGATGTGGAGCGAACCT	59.313	50.000	0.00	0.00	0.00	3.50
4493	4834	0.247736	ACTGATGTGGAGCGAACCTC	59.752	55.000	0.00	0.00	39.98	3.85
4494	4835	0.803768	CTGATGTGGAGCGAACCTCG	60.804	60.000	0.00	0.00	41.71	4.63
4495	4836	1.215647	GATGTGGAGCGAACCTCGT	59.784	57.895	0.00	0.00	42.81	4.18
4496	4837	1.078759	GATGTGGAGCGAACCTCGTG	61.079	60.000	0.00	0.00	42.81	4.35
4497	4838	1.532604	ATGTGGAGCGAACCTCGTGA	61.533	55.000	0.00	0.00	42.81	4.35
4498	4839	1.733399	GTGGAGCGAACCTCGTGAC	60.733	63.158	0.00	0.00	42.81	3.67
4499	4840	2.504244	GGAGCGAACCTCGTGACG	60.504	66.667	0.00	0.00	42.81	4.35
4500	4841	2.559840	GAGCGAACCTCGTGACGA	59.440	61.111	7.70	7.70	42.81	4.20
4509	4850	3.052082	TCGTGACGAGGGTCGGTC	61.052	66.667	2.39	0.00	46.49	4.79
4510	4851	4.112341	CGTGACGAGGGTCGGTCC	62.112	72.222	0.00	0.00	46.49	4.46
4511	4852	4.112341	GTGACGAGGGTCGGTCCG	62.112	72.222	4.39	4.39	46.49	4.79
4512	4853	4.648626	TGACGAGGGTCGGTCCGT	62.649	66.667	11.88	0.00	46.49	4.69
4513	4854	3.368571	GACGAGGGTCGGTCCGTT	61.369	66.667	11.88	0.00	45.59	4.44
4514	4855	3.621892	GACGAGGGTCGGTCCGTTG	62.622	68.421	11.88	0.00	45.59	4.10
4515	4856	3.677648	CGAGGGTCGGTCCGTTGT	61.678	66.667	11.88	0.00	36.00	3.32
4516	4857	2.739132	GAGGGTCGGTCCGTTGTT	59.261	61.111	11.88	0.00	37.00	2.83
4517	4858	1.666872	GAGGGTCGGTCCGTTGTTG	60.667	63.158	11.88	0.00	37.00	3.33
4518	4859	2.667199	GGGTCGGTCCGTTGTTGG	60.667	66.667	11.88	0.00	37.00	3.77
4519	4860	3.351416	GGTCGGTCCGTTGTTGGC	61.351	66.667	11.88	0.00	0.00	4.52
4520	4861	2.280592	GTCGGTCCGTTGTTGGCT	60.281	61.111	11.88	0.00	0.00	4.75
4521	4862	2.029964	TCGGTCCGTTGTTGGCTC	59.970	61.111	11.88	0.00	0.00	4.70
4522	4863	3.411351	CGGTCCGTTGTTGGCTCG	61.411	66.667	2.08	0.00	0.00	5.03
4523	4864	2.029964	GGTCCGTTGTTGGCTCGA	59.970	61.111	0.00	0.00	0.00	4.04
4524	4865	1.375523	GGTCCGTTGTTGGCTCGAT	60.376	57.895	0.00	0.00	0.00	3.59
4525	4866	0.953960	GGTCCGTTGTTGGCTCGATT	60.954	55.000	0.00	0.00	0.00	3.34
4526	4867	0.872388	GTCCGTTGTTGGCTCGATTT	59.128	50.000	0.00	0.00	0.00	2.17
4527	4868	1.265905	GTCCGTTGTTGGCTCGATTTT	59.734	47.619	0.00	0.00	0.00	1.82
4528	4869	1.950909	TCCGTTGTTGGCTCGATTTTT	59.049	42.857	0.00	0.00	0.00	1.94
4529	4870	2.031508	TCCGTTGTTGGCTCGATTTTTC	60.032	45.455	0.00	0.00	0.00	2.29
4530	4871	2.287308	CCGTTGTTGGCTCGATTTTTCA	60.287	45.455	0.00	0.00	0.00	2.69
4531	4872	2.719046	CGTTGTTGGCTCGATTTTTCAC	59.281	45.455	0.00	0.00	0.00	3.18
4532	4873	2.679355	TGTTGGCTCGATTTTTCACG	57.321	45.000	0.00	0.00	0.00	4.35
4533	4874	1.265635	TGTTGGCTCGATTTTTCACGG	59.734	47.619	0.00	0.00	0.00	4.94
4534	4875	0.239879	TTGGCTCGATTTTTCACGGC	59.760	50.000	0.00	0.00	0.00	5.68
4535	4876	0.886938	TGGCTCGATTTTTCACGGCA	60.887	50.000	0.00	0.00	0.00	5.69
4536	4877	0.454452	GGCTCGATTTTTCACGGCAC	60.454	55.000	0.00	0.00	0.00	5.01
4537	4878	0.237235	GCTCGATTTTTCACGGCACA	59.763	50.000	0.00	0.00	0.00	4.57
4538	4879	1.334599	GCTCGATTTTTCACGGCACAA	60.335	47.619	0.00	0.00	0.00	3.33
4539	4880	2.856720	GCTCGATTTTTCACGGCACAAA	60.857	45.455	0.00	0.00	0.00	2.83
4540	4881	3.367607	CTCGATTTTTCACGGCACAAAA	58.632	40.909	0.00	0.00	0.00	2.44
4541	4882	3.770666	TCGATTTTTCACGGCACAAAAA	58.229	36.364	0.00	1.78	36.25	1.94
4542	4883	4.363999	TCGATTTTTCACGGCACAAAAAT	58.636	34.783	9.35	9.35	42.32	1.82
4543	4884	4.442733	TCGATTTTTCACGGCACAAAAATC	59.557	37.500	18.97	18.97	46.40	2.17
4544	4885	4.375908	CGATTTTTCACGGCACAAAAATCC	60.376	41.667	21.02	11.27	46.79	3.01
4545	4886	3.526931	TTTTCACGGCACAAAAATCCA	57.473	38.095	0.00	0.00	0.00	3.41
4546	4887	3.742433	TTTCACGGCACAAAAATCCAT	57.258	38.095	0.00	0.00	0.00	3.41
4547	4888	3.296322	TTCACGGCACAAAAATCCATC	57.704	42.857	0.00	0.00	0.00	3.51
4548	4889	1.198867	TCACGGCACAAAAATCCATCG	59.801	47.619	0.00	0.00	0.00	3.84
4549	4890	1.068610	CACGGCACAAAAATCCATCGT	60.069	47.619	0.00	0.00	0.00	3.73
4550	4891	1.611491	ACGGCACAAAAATCCATCGTT	59.389	42.857	0.00	0.00	0.00	3.85
4551	4892	2.035321	ACGGCACAAAAATCCATCGTTT	59.965	40.909	0.00	0.00	0.00	3.60
4552	4893	2.661195	CGGCACAAAAATCCATCGTTTC	59.339	45.455	0.00	0.00	0.00	2.78
4553	4894	2.661195	GGCACAAAAATCCATCGTTTCG	59.339	45.455	0.00	0.00	0.00	3.46
4554	4895	3.560503	GCACAAAAATCCATCGTTTCGA	58.439	40.909	0.00	0.00	41.13	3.71
4555	4896	3.360758	GCACAAAAATCCATCGTTTCGAC	59.639	43.478	0.00	0.00	39.18	4.20
4556	4897	4.532276	CACAAAAATCCATCGTTTCGACA	58.468	39.130	0.00	0.00	39.18	4.35
4557	4898	4.378616	CACAAAAATCCATCGTTTCGACAC	59.621	41.667	0.00	0.00	39.18	3.67
4558	4899	4.035792	ACAAAAATCCATCGTTTCGACACA	59.964	37.500	2.18	0.00	39.18	3.72
4559	4900	5.153513	CAAAAATCCATCGTTTCGACACAT	58.846	37.500	2.18	0.00	39.18	3.21
4560	4901	6.072948	ACAAAAATCCATCGTTTCGACACATA	60.073	34.615	2.18	0.00	39.18	2.29
4561	4902	6.489127	AAAATCCATCGTTTCGACACATAA	57.511	33.333	2.18	0.00	39.18	1.90
4562	4903	5.464965	AATCCATCGTTTCGACACATAAC	57.535	39.130	2.18	0.00	39.18	1.89

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
98	99	1.086696	ACCGTTCACATGCATGCTAC	58.913	50.000	26.53	18.92	0.00	3.58
116	117	4.024809	GTGACAGAAAGGAGCACTTGTAAC	60.025	45.833	0.00	0.00	39.96	2.50
268	590	5.258456	AGTACATATCCATGAAACGTCGT	57.742	39.130	0.00	0.00	35.96	4.34
293	615	6.478129	TCGAACAAATTTAGAAGGGGTGTAT	58.522	36.000	0.00	0.00	0.00	2.29
348	670	8.690203	TCCTTATCTGACAAAAATTCAACTCA	57.310	30.769	0.00	0.00	0.00	3.41
352	674	7.596494	CAGCTCCTTATCTGACAAAAATTCAA	58.404	34.615	0.00	0.00	32.26	2.69
353	675	6.349611	GCAGCTCCTTATCTGACAAAAATTCA	60.350	38.462	0.00	0.00	32.26	2.57
586	908	0.821517	AACCATCTGCGATCCGTACA	59.178	50.000	0.00	0.00	0.00	2.90
651	973	1.227556	GCACGTCACAGACTGGGTT	60.228	57.895	4.24	0.00	0.00	4.11
652	974	2.421739	GCACGTCACAGACTGGGT	59.578	61.111	4.24	0.00	0.00	4.51
4481	4822	2.649034	GTCACGAGGTTCGCTCCA	59.351	61.111	0.00	0.00	45.12	3.86
4482	4823	2.504244	CGTCACGAGGTTCGCTCC	60.504	66.667	0.00	0.00	45.12	4.70
4483	4824	2.559840	TCGTCACGAGGTTCGCTC	59.440	61.111	0.00	0.00	45.12	5.03
4492	4833	3.052082	GACCGACCCTCGTCACGA	61.052	66.667	0.00	0.00	39.11	4.35
4493	4834	4.112341	GGACCGACCCTCGTCACG	62.112	72.222	0.00	0.00	39.11	4.35
4494	4835	4.112341	CGGACCGACCCTCGTCAC	62.112	72.222	8.64	0.00	39.11	3.67
4495	4836	4.648626	ACGGACCGACCCTCGTCA	62.649	66.667	23.38	0.00	39.11	4.35
4496	4837	3.368571	AACGGACCGACCCTCGTC	61.369	66.667	23.38	0.00	38.40	4.20
4497	4838	3.677648	CAACGGACCGACCCTCGT	61.678	66.667	23.38	0.00	38.40	4.18
4498	4839	3.216944	AACAACGGACCGACCCTCG	62.217	63.158	23.38	4.25	40.07	4.63
4499	4840	1.666872	CAACAACGGACCGACCCTC	60.667	63.158	23.38	0.00	34.64	4.30
4500	4841	2.424302	CAACAACGGACCGACCCT	59.576	61.111	23.38	0.00	34.64	4.34
4501	4842	2.667199	CCAACAACGGACCGACCC	60.667	66.667	23.38	0.00	34.64	4.46
4502	4843	3.351416	GCCAACAACGGACCGACC	61.351	66.667	23.38	0.00	0.00	4.79
4503	4844	2.280592	AGCCAACAACGGACCGAC	60.281	61.111	23.38	0.52	0.00	4.79
4504	4845	2.029964	GAGCCAACAACGGACCGA	59.970	61.111	23.38	0.00	0.00	4.69
4505	4846	3.411351	CGAGCCAACAACGGACCG	61.411	66.667	13.61	13.61	0.00	4.79
4506	4847	0.953960	AATCGAGCCAACAACGGACC	60.954	55.000	0.00	0.00	0.00	4.46
4507	4848	0.872388	AAATCGAGCCAACAACGGAC	59.128	50.000	0.00	0.00	0.00	4.79
4508	4849	1.600023	AAAATCGAGCCAACAACGGA	58.400	45.000	0.00	0.00	0.00	4.69
4509	4850	2.287308	TGAAAAATCGAGCCAACAACGG	60.287	45.455	0.00	0.00	0.00	4.44
4510	4851	2.719046	GTGAAAAATCGAGCCAACAACG	59.281	45.455	0.00	0.00	0.00	4.10
4511	4852	2.719046	CGTGAAAAATCGAGCCAACAAC	59.281	45.455	0.00	0.00	0.00	3.32
4512	4853	2.287308	CCGTGAAAAATCGAGCCAACAA	60.287	45.455	0.00	0.00	0.00	2.83
4513	4854	1.265635	CCGTGAAAAATCGAGCCAACA	59.734	47.619	0.00	0.00	0.00	3.33
4514	4855	1.963747	CCGTGAAAAATCGAGCCAAC	58.036	50.000	0.00	0.00	0.00	3.77
4515	4856	0.239879	GCCGTGAAAAATCGAGCCAA	59.760	50.000	0.00	0.00	0.00	4.52
4516	4857	0.886938	TGCCGTGAAAAATCGAGCCA	60.887	50.000	0.00	0.00	0.00	4.75
4517	4858	0.454452	GTGCCGTGAAAAATCGAGCC	60.454	55.000	0.00	0.00	0.00	4.70
4518	4859	0.237235	TGTGCCGTGAAAAATCGAGC	59.763	50.000	0.00	0.00	0.00	5.03
4519	4860	2.679355	TTGTGCCGTGAAAAATCGAG	57.321	45.000	0.00	0.00	0.00	4.04
4520	4861	3.422417	TTTTGTGCCGTGAAAAATCGA	57.578	38.095	0.00	0.00	0.00	3.59
4521	4862	4.687047	GATTTTTGTGCCGTGAAAAATCG	58.313	39.130	11.91	0.00	43.39	3.34
4523	4864	4.446371	TGGATTTTTGTGCCGTGAAAAAT	58.554	34.783	0.00	0.00	41.98	1.82
4524	4865	3.861840	TGGATTTTTGTGCCGTGAAAAA	58.138	36.364	0.00	0.00	35.95	1.94
4525	4866	3.526931	TGGATTTTTGTGCCGTGAAAA	57.473	38.095	0.00	0.00	0.00	2.29
4526	4867	3.648009	GATGGATTTTTGTGCCGTGAAA	58.352	40.909	0.00	0.00	0.00	2.69
4527	4868	2.351253	CGATGGATTTTTGTGCCGTGAA	60.351	45.455	0.00	0.00	0.00	3.18
4528	4869	1.198867	CGATGGATTTTTGTGCCGTGA	59.801	47.619	0.00	0.00	0.00	4.35
4529	4870	1.068610	ACGATGGATTTTTGTGCCGTG	60.069	47.619	0.00	0.00	0.00	4.94
4530	4871	1.243902	ACGATGGATTTTTGTGCCGT	58.756	45.000	0.00	0.00	0.00	5.68
4531	4872	2.346099	AACGATGGATTTTTGTGCCG	57.654	45.000	0.00	0.00	0.00	5.69
4532	4873	2.661195	CGAAACGATGGATTTTTGTGCC	59.339	45.455	0.00	0.00	0.00	5.01
4533	4874	3.360758	GTCGAAACGATGGATTTTTGTGC	59.639	43.478	0.00	0.00	38.42	4.57
4534	4875	4.378616	GTGTCGAAACGATGGATTTTTGTG	59.621	41.667	0.00	0.00	38.42	3.33
4535	4876	4.035792	TGTGTCGAAACGATGGATTTTTGT	59.964	37.500	0.32	0.00	38.42	2.83
4536	4877	4.532276	TGTGTCGAAACGATGGATTTTTG	58.468	39.130	0.32	0.00	38.42	2.44
4537	4878	4.822036	TGTGTCGAAACGATGGATTTTT	57.178	36.364	0.32	0.00	38.42	1.94
4538	4879	6.148811	AGTTATGTGTCGAAACGATGGATTTT	59.851	34.615	0.32	0.00	38.42	1.82
4539	4880	5.642063	AGTTATGTGTCGAAACGATGGATTT	59.358	36.000	0.32	0.00	38.42	2.17
4540	4881	5.063438	CAGTTATGTGTCGAAACGATGGATT	59.937	40.000	0.32	0.00	38.42	3.01
4541	4882	4.566759	CAGTTATGTGTCGAAACGATGGAT	59.433	41.667	0.32	0.00	38.42	3.41
4542	4883	3.924073	CAGTTATGTGTCGAAACGATGGA	59.076	43.478	0.32	0.00	38.42	3.41
4543	4884	3.924073	TCAGTTATGTGTCGAAACGATGG	59.076	43.478	0.32	0.00	38.42	3.51
4544	4885	5.484085	CATCAGTTATGTGTCGAAACGATG	58.516	41.667	0.32	8.66	38.42	3.84
4545	4886	5.702622	CATCAGTTATGTGTCGAAACGAT	57.297	39.130	0.32	0.00	38.42	3.73
4557	4898	2.609459	GGTTCGCTCCACATCAGTTATG	59.391	50.000	0.00	0.00	41.74	1.90
4558	4899	2.501723	AGGTTCGCTCCACATCAGTTAT	59.498	45.455	0.00	0.00	0.00	1.89
4559	4900	1.899814	AGGTTCGCTCCACATCAGTTA	59.100	47.619	0.00	0.00	0.00	2.24
4560	4901	0.687354	AGGTTCGCTCCACATCAGTT	59.313	50.000	0.00	0.00	0.00	3.16
4561	4902	0.247736	GAGGTTCGCTCCACATCAGT	59.752	55.000	0.00	0.00	0.00	3.41
4562	4903	0.803768	CGAGGTTCGCTCCACATCAG	60.804	60.000	0.00	0.00	31.14	2.90

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.