Multiple sequence alignment - TraesCS7D01G286800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G286800 chr7D 100.000 6285 0 0 1 6285 310336627 310330343 0.000000e+00 11607.0
1 TraesCS7D01G286800 chr7D 92.163 1276 78 7 5028 6285 315437229 315438500 0.000000e+00 1783.0
2 TraesCS7D01G286800 chr7D 92.679 1202 66 7 5029 6209 296467634 296468834 0.000000e+00 1712.0
3 TraesCS7D01G286800 chr7D 91.802 1232 78 9 5028 6238 380172552 380171323 0.000000e+00 1694.0
4 TraesCS7D01G286800 chr7A 97.685 3629 61 8 1387 5010 334469306 334465696 0.000000e+00 6215.0
5 TraesCS7D01G286800 chr7A 92.580 1415 54 16 1 1391 334470734 334469347 0.000000e+00 1984.0
6 TraesCS7D01G286800 chr7A 90.000 100 7 3 4909 5006 334465840 334465742 6.610000e-25 126.0
7 TraesCS7D01G286800 chr7B 96.791 3584 77 9 1387 4960 282771409 282774964 0.000000e+00 5947.0
8 TraesCS7D01G286800 chr7B 91.994 1424 49 28 1 1391 282769977 282771368 0.000000e+00 1938.0
9 TraesCS7D01G286800 chr7B 92.941 170 10 2 3663 3831 282773506 282773674 4.870000e-61 246.0
10 TraesCS7D01G286800 chr7B 88.182 110 12 1 4909 5017 282774870 282774979 5.110000e-26 130.0
11 TraesCS7D01G286800 chr1D 91.883 1232 76 10 5028 6238 111829578 111828350 0.000000e+00 1700.0
12 TraesCS7D01G286800 chr5B 91.381 1253 83 16 5028 6261 227606158 227604912 0.000000e+00 1692.0
13 TraesCS7D01G286800 chr5B 85.185 351 38 11 3663 4003 417880521 417880175 1.300000e-91 348.0
14 TraesCS7D01G286800 chr5B 85.845 219 26 3 4007 4224 417879053 417878839 1.760000e-55 228.0
15 TraesCS7D01G286800 chr5B 89.262 149 13 3 4575 4722 417877198 417877052 3.870000e-42 183.0
16 TraesCS7D01G286800 chr4B 91.308 1254 84 9 5028 6261 297190827 297192075 0.000000e+00 1688.0
17 TraesCS7D01G286800 chr2B 91.228 1254 86 8 5028 6261 195613885 195615134 0.000000e+00 1685.0
18 TraesCS7D01G286800 chr2B 90.760 1277 92 9 5030 6285 324109309 324110580 0.000000e+00 1681.0
19 TraesCS7D01G286800 chr1B 91.214 1252 86 7 5028 6261 254521378 254522623 0.000000e+00 1681.0
20 TraesCS7D01G286800 chr5A 85.408 233 30 2 4281 4512 454723939 454723710 8.140000e-59 239.0
21 TraesCS7D01G286800 chr3B 92.105 38 2 1 69 106 481438091 481438127 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G286800 chr7D 310330343 310336627 6284 True 11607.00 11607 100.000000 1 6285 1 chr7D.!!$R1 6284
1 TraesCS7D01G286800 chr7D 315437229 315438500 1271 False 1783.00 1783 92.163000 5028 6285 1 chr7D.!!$F2 1257
2 TraesCS7D01G286800 chr7D 296467634 296468834 1200 False 1712.00 1712 92.679000 5029 6209 1 chr7D.!!$F1 1180
3 TraesCS7D01G286800 chr7D 380171323 380172552 1229 True 1694.00 1694 91.802000 5028 6238 1 chr7D.!!$R2 1210
4 TraesCS7D01G286800 chr7A 334465696 334470734 5038 True 2775.00 6215 93.421667 1 5010 3 chr7A.!!$R1 5009
5 TraesCS7D01G286800 chr7B 282769977 282774979 5002 False 2065.25 5947 92.477000 1 5017 4 chr7B.!!$F1 5016
6 TraesCS7D01G286800 chr1D 111828350 111829578 1228 True 1700.00 1700 91.883000 5028 6238 1 chr1D.!!$R1 1210
7 TraesCS7D01G286800 chr5B 227604912 227606158 1246 True 1692.00 1692 91.381000 5028 6261 1 chr5B.!!$R1 1233
8 TraesCS7D01G286800 chr5B 417877052 417880521 3469 True 253.00 348 86.764000 3663 4722 3 chr5B.!!$R2 1059
9 TraesCS7D01G286800 chr4B 297190827 297192075 1248 False 1688.00 1688 91.308000 5028 6261 1 chr4B.!!$F1 1233
10 TraesCS7D01G286800 chr2B 195613885 195615134 1249 False 1685.00 1685 91.228000 5028 6261 1 chr2B.!!$F1 1233
11 TraesCS7D01G286800 chr2B 324109309 324110580 1271 False 1681.00 1681 90.760000 5030 6285 1 chr2B.!!$F2 1255
12 TraesCS7D01G286800 chr1B 254521378 254522623 1245 False 1681.00 1681 91.214000 5028 6261 1 chr1B.!!$F1 1233

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 206 0.388649 GCGTCAGAGATTGTGTCCGT 60.389 55.000 0.00 0.00 0.00 4.69 F
1326 1365 0.107508 CGATGACAAGGCCACCATCT 60.108 55.000 5.01 0.00 34.75 2.90 F
1857 1947 2.327325 TTTAGGTCCTGCCAGAGAGT 57.673 50.000 0.00 0.00 40.61 3.24 F
2857 2947 1.558756 CCTCCAGAAGAAGGTCTGCAT 59.441 52.381 0.00 0.00 43.18 3.96 F
2858 2948 2.768527 CCTCCAGAAGAAGGTCTGCATA 59.231 50.000 0.00 0.00 43.18 3.14 F
4431 7107 1.823169 ATTGTTGCTGGCTGCCCTTG 61.823 55.000 17.53 7.63 42.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1636 1726 1.668628 GCTGGGTTGTTAAATGCACGG 60.669 52.381 0.00 0.0 0.00 4.94 R
2567 2657 1.129058 ACAACAGGTTCTTCGAGGGT 58.871 50.000 0.00 0.0 0.00 4.34 R
3108 3206 1.595382 CAGAATAAGCCGCTCCCCG 60.595 63.158 0.00 0.0 0.00 5.73 R
4328 6727 0.740868 CTCCAGATCGCGCCTTGAAA 60.741 55.000 0.00 0.0 0.00 2.69 R
4547 7223 1.620822 AACCATTTCAGGACACAGGC 58.379 50.000 0.00 0.0 0.00 4.85 R
5620 8318 0.822121 GGGGTTCTGTGACGCCTTTT 60.822 55.000 10.88 0.0 46.07 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 1.687840 CGTAGGATGGGGTGGTGGA 60.688 63.158 0.00 0.00 0.00 4.02
86 90 1.229529 GGTGGTGGAGGAGGAGGAA 60.230 63.158 0.00 0.00 0.00 3.36
89 93 0.719015 TGGTGGAGGAGGAGGAAGAT 59.281 55.000 0.00 0.00 0.00 2.40
95 99 3.246130 TGGAGGAGGAGGAAGATGAAGAA 60.246 47.826 0.00 0.00 0.00 2.52
166 173 2.498466 GTGGACGACGACGACGAC 60.498 66.667 25.15 18.64 42.66 4.34
167 174 2.662857 TGGACGACGACGACGACT 60.663 61.111 25.15 4.61 42.66 4.18
168 175 1.372872 TGGACGACGACGACGACTA 60.373 57.895 25.15 14.66 42.66 2.59
169 176 1.343147 GGACGACGACGACGACTAG 59.657 63.158 25.15 4.59 42.66 2.57
199 206 0.388649 GCGTCAGAGATTGTGTCCGT 60.389 55.000 0.00 0.00 0.00 4.69
206 213 2.563179 AGAGATTGTGTCCGTGCTAACT 59.437 45.455 0.00 0.00 0.00 2.24
244 251 2.262915 GTGGTCACCAGAGAGGCG 59.737 66.667 0.00 0.00 43.14 5.52
273 280 2.282783 TAGCAACAGCCTGAGCCGA 61.283 57.895 0.00 0.00 41.25 5.54
306 313 1.139308 GCTGCAACAACACTGCACA 59.861 52.632 0.00 0.00 44.67 4.57
456 466 7.014711 TGTTGAAATGCTGGGACTATGTTTAAA 59.985 33.333 0.00 0.00 0.00 1.52
463 473 8.276252 TGCTGGGACTATGTTTAAATTAAGTC 57.724 34.615 13.96 13.96 34.08 3.01
497 507 9.619316 TTTTGGTGTGAAATATTTTATGTCTCG 57.381 29.630 1.43 0.00 0.00 4.04
554 564 3.977244 CTGTTGTGTTGGGCGCCC 61.977 66.667 39.40 39.40 0.00 6.13
557 567 1.677633 GTTGTGTTGGGCGCCCTAT 60.678 57.895 43.34 0.00 36.94 2.57
558 568 1.677300 TTGTGTTGGGCGCCCTATG 60.677 57.895 43.34 0.00 36.94 2.23
562 572 2.690881 TTGGGCGCCCTATGGTCT 60.691 61.111 43.34 0.00 36.94 3.85
564 574 3.480133 GGGCGCCCTATGGTCTGT 61.480 66.667 38.76 0.00 0.00 3.41
607 617 1.454479 CCGGCTGGCTGATCCAAAT 60.454 57.895 0.00 0.00 46.01 2.32
609 619 0.749091 CGGCTGGCTGATCCAAATGA 60.749 55.000 0.00 0.00 46.01 2.57
615 625 4.202223 GCTGGCTGATCCAAATGAATGAAT 60.202 41.667 0.00 0.00 46.01 2.57
616 626 5.270893 TGGCTGATCCAAATGAATGAATG 57.729 39.130 0.00 0.00 43.21 2.67
617 627 4.056050 GGCTGATCCAAATGAATGAATGC 58.944 43.478 0.00 0.00 34.01 3.56
641 666 4.025401 GTGCGTTGGAGTTGGCCG 62.025 66.667 0.00 0.00 0.00 6.13
1326 1365 0.107508 CGATGACAAGGCCACCATCT 60.108 55.000 5.01 0.00 34.75 2.90
1407 1491 4.136796 CCTGATTTCCTCGCCATTGATTA 58.863 43.478 0.00 0.00 0.00 1.75
1539 1623 9.178758 AGAAACCAATTTGTTCAGGATAGTATC 57.821 33.333 1.11 1.11 0.00 2.24
1694 1784 6.942886 TTGAAGTTTGCTGTTGTTTACTTG 57.057 33.333 0.00 0.00 0.00 3.16
1695 1785 6.019779 TGAAGTTTGCTGTTGTTTACTTGT 57.980 33.333 0.00 0.00 0.00 3.16
1696 1786 6.451393 TGAAGTTTGCTGTTGTTTACTTGTT 58.549 32.000 0.00 0.00 0.00 2.83
1697 1787 6.926272 TGAAGTTTGCTGTTGTTTACTTGTTT 59.074 30.769 0.00 0.00 0.00 2.83
1791 1881 6.464222 TCACTGGAGTATGAAGTTCGAAATT 58.536 36.000 11.11 11.11 0.00 1.82
1857 1947 2.327325 TTTAGGTCCTGCCAGAGAGT 57.673 50.000 0.00 0.00 40.61 3.24
1871 1961 5.827797 TGCCAGAGAGTTAAATCACAGTTTT 59.172 36.000 5.62 0.00 0.00 2.43
2306 2396 6.496565 TGAAAATCACCCATACAAGAAATGGT 59.503 34.615 1.73 0.00 42.06 3.55
2567 2657 4.130118 GGTTGAGTTTTTCTCTGCTCAGA 58.870 43.478 0.00 0.00 43.13 3.27
2568 2658 4.024472 GGTTGAGTTTTTCTCTGCTCAGAC 60.024 45.833 0.00 0.00 43.13 3.51
2857 2947 1.558756 CCTCCAGAAGAAGGTCTGCAT 59.441 52.381 0.00 0.00 43.18 3.96
2858 2948 2.768527 CCTCCAGAAGAAGGTCTGCATA 59.231 50.000 0.00 0.00 43.18 3.14
2859 2949 3.198635 CCTCCAGAAGAAGGTCTGCATAA 59.801 47.826 0.00 0.00 43.18 1.90
2860 2950 4.141528 CCTCCAGAAGAAGGTCTGCATAAT 60.142 45.833 0.00 0.00 43.18 1.28
2861 2951 4.774124 TCCAGAAGAAGGTCTGCATAATG 58.226 43.478 0.00 0.00 43.18 1.90
2862 2952 3.314635 CCAGAAGAAGGTCTGCATAATGC 59.685 47.826 0.00 0.00 43.18 3.56
2863 2953 4.197750 CAGAAGAAGGTCTGCATAATGCT 58.802 43.478 0.00 0.00 45.31 3.79
2864 2954 4.272991 CAGAAGAAGGTCTGCATAATGCTC 59.727 45.833 0.00 0.00 45.31 4.26
3108 3206 8.668510 TGAACTTAGATGATATCAGAAAAGCC 57.331 34.615 11.78 9.50 0.00 4.35
3367 3465 9.083080 GTCCTTGGTGTACATTAATTATTTTGC 57.917 33.333 0.00 0.00 0.00 3.68
3520 3618 4.625311 CCAGTGTTTTGTTGTTGGTCTTTC 59.375 41.667 0.00 0.00 0.00 2.62
3674 3774 7.078228 CAGAAATTAGCAAAGTACCAGTGTTC 58.922 38.462 0.00 0.00 0.00 3.18
3692 3793 6.747280 CAGTGTTCTGTTGTTGGTCTTTTTAG 59.253 38.462 0.00 0.00 36.97 1.85
4267 6666 5.381477 CAAACAGTTTGGTGTTTCTTTTGC 58.619 37.500 17.16 0.00 45.53 3.68
4431 7107 1.823169 ATTGTTGCTGGCTGCCCTTG 61.823 55.000 17.53 7.63 42.00 3.61
4454 7130 4.097892 GTCACTCTCTTTTCCTTTGCCAAA 59.902 41.667 0.00 0.00 0.00 3.28
4547 7223 7.946381 TGCTATTCACCTCCTATATGAGTAG 57.054 40.000 4.57 2.46 36.35 2.57
4712 7390 1.076412 TGTTTCCCAGGTGCAAGCA 60.076 52.632 0.00 0.00 36.26 3.91
4869 7547 7.255277 GGATGATAAACAAAATACTCCCTCTGC 60.255 40.741 0.00 0.00 0.00 4.26
4873 7551 3.600388 ACAAAATACTCCCTCTGCTTCG 58.400 45.455 0.00 0.00 0.00 3.79
4909 7587 1.231958 TGTTTTGGCATCGGTCGGTC 61.232 55.000 0.00 0.00 0.00 4.79
4997 7675 5.295950 TGTTTTGGCATCGATCATGTTTTT 58.704 33.333 0.00 0.00 34.56 1.94
5006 7684 8.323140 GGCATCGATCATGTTTTTCAAAATAAG 58.677 33.333 0.00 0.00 34.56 1.73
5010 7688 9.393249 TCGATCATGTTTTTCAAAATAAGTGAC 57.607 29.630 0.00 0.00 0.00 3.67
5011 7689 9.179552 CGATCATGTTTTTCAAAATAAGTGACA 57.820 29.630 0.00 0.00 0.00 3.58
5017 7695 9.868277 TGTTTTTCAAAATAAGTGACATCTTGT 57.132 25.926 0.00 0.00 0.00 3.16
5098 7782 6.567701 CGCACGCCAATTAAATTATCAGGTAT 60.568 38.462 0.00 0.00 0.00 2.73
5174 7867 7.271511 ACATTGGTTTTGCTTACAAATGAAGA 58.728 30.769 15.70 0.00 44.96 2.87
5331 8024 7.062749 AGCCTTGGACGAAATATACAAGATA 57.937 36.000 0.00 0.00 40.60 1.98
5366 8059 6.814954 ATTTTGTCCAGAGGCTATTCTAGA 57.185 37.500 0.00 0.00 0.00 2.43
5452 8145 2.812836 TAGAGTCCGTATGTGTGGGA 57.187 50.000 0.00 0.00 0.00 4.37
5599 8297 5.049680 CCATAGTTGCAACTTCGTGTACTTT 60.050 40.000 35.20 10.83 40.37 2.66
5620 8318 3.075148 TGTTTGTGTTCAACGACCAGAA 58.925 40.909 0.00 0.00 32.93 3.02
5724 8422 1.098869 TGTTCTTCGTTTGCCTGCAA 58.901 45.000 0.00 0.00 0.00 4.08
5845 8543 3.066342 TCGTAGTCGGATCATCAAAGTCC 59.934 47.826 0.00 0.00 37.69 3.85
5851 8549 3.515502 TCGGATCATCAAAGTCCACTTCT 59.484 43.478 0.00 0.00 34.61 2.85
5918 8616 4.586421 TGCCTCTATCAAGTGGTATCAGAG 59.414 45.833 0.00 0.00 38.43 3.35
5987 8685 6.268825 TGAGTCTGTTCTTCATACCTACAC 57.731 41.667 0.00 0.00 0.00 2.90
6045 8746 8.680903 GTTCATCATATCTGAACCAATTTGAGT 58.319 33.333 13.34 0.00 44.26 3.41
6058 8759 7.472334 ACCAATTTGAGTCTTTGCATAATCT 57.528 32.000 0.00 0.00 0.00 2.40
6210 8914 2.594592 GCCATATCCCACCACCGC 60.595 66.667 0.00 0.00 0.00 5.68
6243 8947 2.072487 ACCGCTGCCATATCCCACT 61.072 57.895 0.00 0.00 0.00 4.00
6261 8965 3.557054 CCACTAACGCTGCCATATACCAT 60.557 47.826 0.00 0.00 0.00 3.55
6266 8970 2.028112 ACGCTGCCATATACCATCGATT 60.028 45.455 0.00 0.00 0.00 3.34
6274 8978 5.212934 CCATATACCATCGATTCGTATCCG 58.787 45.833 15.07 9.53 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.021793 CAACATCGCATGCGTCCG 59.978 61.111 36.50 26.94 40.74 4.79
76 77 4.289245 CTCTTCTTCATCTTCCTCCTCCT 58.711 47.826 0.00 0.00 0.00 3.69
86 90 2.397597 GGCTCCTCCTCTTCTTCATCT 58.602 52.381 0.00 0.00 0.00 2.90
89 93 0.972983 CCGGCTCCTCCTCTTCTTCA 60.973 60.000 0.00 0.00 0.00 3.02
95 99 4.488911 ATGGCCGGCTCCTCCTCT 62.489 66.667 28.56 0.00 0.00 3.69
161 168 0.872021 CGCAGGGCATTCTAGTCGTC 60.872 60.000 0.00 0.00 0.00 4.20
162 169 1.141881 CGCAGGGCATTCTAGTCGT 59.858 57.895 0.00 0.00 0.00 4.34
163 170 2.240500 GCGCAGGGCATTCTAGTCG 61.241 63.158 0.30 0.00 42.87 4.18
164 171 2.240500 CGCGCAGGGCATTCTAGTC 61.241 63.158 8.75 0.00 43.84 2.59
165 172 2.202932 CGCGCAGGGCATTCTAGT 60.203 61.111 8.75 0.00 43.84 2.57
199 206 1.454104 CCCACCCACACAGTTAGCA 59.546 57.895 0.00 0.00 0.00 3.49
221 228 0.110678 TCTCTGGTGACCACGTCTCT 59.889 55.000 0.00 0.00 33.15 3.10
244 251 0.949105 CTGTTGCTACACCACCGGTC 60.949 60.000 2.59 0.00 31.02 4.79
294 301 1.418342 GACGACGTGTGCAGTGTTGT 61.418 55.000 4.58 5.67 33.01 3.32
345 352 1.623811 GAGGTAGACAAAGGGCAGTGA 59.376 52.381 0.00 0.00 0.00 3.41
356 363 1.583495 CGTCCGCAGTGAGGTAGACA 61.583 60.000 13.04 0.00 0.00 3.41
456 466 5.237779 CACACCAAAAGTACACGGACTTAAT 59.762 40.000 0.00 0.00 38.75 1.40
463 473 4.561735 ATTTCACACCAAAAGTACACGG 57.438 40.909 0.00 0.00 0.00 4.94
464 474 8.568732 AAAATATTTCACACCAAAAGTACACG 57.431 30.769 0.10 0.00 0.00 4.49
578 588 3.041940 CAGCCGGACACCAACGTC 61.042 66.667 5.05 0.00 35.03 4.34
582 592 4.641645 CAGCCAGCCGGACACCAA 62.642 66.667 5.05 0.00 0.00 3.67
607 617 2.392821 GCACAAACACGCATTCATTCA 58.607 42.857 0.00 0.00 0.00 2.57
609 619 1.268999 ACGCACAAACACGCATTCATT 60.269 42.857 0.00 0.00 0.00 2.57
615 625 2.101185 CCAACGCACAAACACGCA 59.899 55.556 0.00 0.00 0.00 5.24
616 626 1.654137 CTCCAACGCACAAACACGC 60.654 57.895 0.00 0.00 0.00 5.34
617 627 0.098025 AACTCCAACGCACAAACACG 59.902 50.000 0.00 0.00 0.00 4.49
1554 1638 4.818534 TGTACGTGGAATCCGACTATAC 57.181 45.455 0.00 1.72 0.00 1.47
1636 1726 1.668628 GCTGGGTTGTTAAATGCACGG 60.669 52.381 0.00 0.00 0.00 4.94
1791 1881 7.081349 CCGAGCATTTTGTTTGTAGATGTAAA 58.919 34.615 0.00 0.00 0.00 2.01
2005 2095 5.873732 GGCAACTAGCTGAGTAATGAAAAG 58.126 41.667 0.00 0.00 44.79 2.27
2306 2396 1.407618 AGTGGCTGCATACGTATCGAA 59.592 47.619 4.74 0.00 0.00 3.71
2364 2454 6.584184 CAGTATTACATGCAGAAGTAGGATCG 59.416 42.308 0.00 0.00 0.00 3.69
2567 2657 1.129058 ACAACAGGTTCTTCGAGGGT 58.871 50.000 0.00 0.00 0.00 4.34
2568 2658 2.931320 GCTACAACAGGTTCTTCGAGGG 60.931 54.545 0.00 0.00 0.00 4.30
2857 2947 6.477053 AACAGAGAGAGCATTAGAGCATTA 57.523 37.500 0.00 0.00 36.85 1.90
2858 2948 5.356291 AACAGAGAGAGCATTAGAGCATT 57.644 39.130 0.00 0.00 36.85 3.56
2859 2949 5.105023 TCAAACAGAGAGAGCATTAGAGCAT 60.105 40.000 0.00 0.00 36.85 3.79
2860 2950 4.221482 TCAAACAGAGAGAGCATTAGAGCA 59.779 41.667 0.00 0.00 36.85 4.26
2861 2951 4.753233 TCAAACAGAGAGAGCATTAGAGC 58.247 43.478 0.00 0.00 0.00 4.09
2862 2952 8.939201 TTAATCAAACAGAGAGAGCATTAGAG 57.061 34.615 0.00 0.00 0.00 2.43
2863 2953 9.896645 AATTAATCAAACAGAGAGAGCATTAGA 57.103 29.630 0.00 0.00 0.00 2.10
3108 3206 1.595382 CAGAATAAGCCGCTCCCCG 60.595 63.158 0.00 0.00 0.00 5.73
3367 3465 6.096141 AGTCAGTCACAAGGTCATACTGATAG 59.904 42.308 6.74 0.00 45.83 2.08
3487 3585 7.543947 ACAACAAAACACTGGTACTAACTAC 57.456 36.000 0.00 0.00 0.00 2.73
3520 3618 7.862873 TCACTCGCAGATCAACATAATAAGTAG 59.137 37.037 0.00 0.00 33.89 2.57
3540 3638 1.673033 CCCTTACTTGGCAGTCACTCG 60.673 57.143 0.00 0.00 34.06 4.18
3692 3793 8.607459 CAGTTCCTCACAGATCAACATAATAAC 58.393 37.037 0.00 0.00 0.00 1.89
4267 6666 1.547372 CCAAACCAGGAAGCAATGGAG 59.453 52.381 0.00 0.00 39.02 3.86
4328 6727 0.740868 CTCCAGATCGCGCCTTGAAA 60.741 55.000 0.00 0.00 0.00 2.69
4431 7107 3.214328 TGGCAAAGGAAAAGAGAGTGAC 58.786 45.455 0.00 0.00 0.00 3.67
4454 7130 2.616510 GCATGAGCTGGTACCAGTCTTT 60.617 50.000 36.31 22.37 45.24 2.52
4547 7223 1.620822 AACCATTTCAGGACACAGGC 58.379 50.000 0.00 0.00 0.00 4.85
4712 7390 5.726980 TTCATTGCCAAAAACAGCTCTAT 57.273 34.783 0.00 0.00 0.00 1.98
4930 7608 0.525761 CCGACCGATGCCAAAACATT 59.474 50.000 0.00 0.00 0.00 2.71
5011 7689 4.080863 GGGTGTAAGTCCTCATCACAAGAT 60.081 45.833 0.00 0.00 33.87 2.40
5012 7690 3.260884 GGGTGTAAGTCCTCATCACAAGA 59.739 47.826 0.00 0.00 0.00 3.02
5013 7691 3.007940 TGGGTGTAAGTCCTCATCACAAG 59.992 47.826 0.00 0.00 0.00 3.16
5014 7692 2.976185 TGGGTGTAAGTCCTCATCACAA 59.024 45.455 0.00 0.00 0.00 3.33
5015 7693 2.301870 GTGGGTGTAAGTCCTCATCACA 59.698 50.000 0.00 0.00 0.00 3.58
5016 7694 2.301870 TGTGGGTGTAAGTCCTCATCAC 59.698 50.000 0.00 0.00 0.00 3.06
5017 7695 2.567169 CTGTGGGTGTAAGTCCTCATCA 59.433 50.000 0.00 0.00 0.00 3.07
5018 7696 2.678190 GCTGTGGGTGTAAGTCCTCATC 60.678 54.545 0.00 0.00 0.00 2.92
5019 7697 1.279271 GCTGTGGGTGTAAGTCCTCAT 59.721 52.381 0.00 0.00 0.00 2.90
5020 7698 0.685097 GCTGTGGGTGTAAGTCCTCA 59.315 55.000 0.00 0.00 0.00 3.86
5021 7699 0.036294 GGCTGTGGGTGTAAGTCCTC 60.036 60.000 0.00 0.00 0.00 3.71
5022 7700 1.489560 GGGCTGTGGGTGTAAGTCCT 61.490 60.000 0.00 0.00 32.73 3.85
5023 7701 1.002502 GGGCTGTGGGTGTAAGTCC 60.003 63.158 0.00 0.00 0.00 3.85
5024 7702 1.002502 GGGGCTGTGGGTGTAAGTC 60.003 63.158 0.00 0.00 0.00 3.01
5025 7703 1.463410 AGGGGCTGTGGGTGTAAGT 60.463 57.895 0.00 0.00 0.00 2.24
5026 7704 1.002134 CAGGGGCTGTGGGTGTAAG 60.002 63.158 0.00 0.00 0.00 2.34
5098 7782 9.311916 CTCATGAACATTACCAAGAAACAAAAA 57.688 29.630 0.00 0.00 0.00 1.94
5154 7847 4.686091 GGCTCTTCATTTGTAAGCAAAACC 59.314 41.667 0.00 0.00 46.23 3.27
5174 7867 0.769873 CCTCTTATCCATGCCAGGCT 59.230 55.000 14.15 0.00 0.00 4.58
5331 8024 6.209391 CCTCTGGACAAAATTTATGAAGTGGT 59.791 38.462 0.00 0.00 0.00 4.16
5366 8059 3.565482 CCAATAATAAGGTGACGCAGCAT 59.435 43.478 10.74 2.74 33.95 3.79
5452 8145 5.163591 CGAAACCAACCCTAACTCTTGTTTT 60.164 40.000 0.00 0.00 37.59 2.43
5483 8176 2.198304 GATTCGTGGCCCTTGGAGGT 62.198 60.000 0.00 0.00 31.93 3.85
5552 8249 9.830975 ATGGCAAACTTTAATCTAAACAAAACT 57.169 25.926 0.00 0.00 0.00 2.66
5573 8271 1.535028 CACGAAGTTGCAACTATGGCA 59.465 47.619 31.31 0.00 41.61 4.92
5581 8279 4.688511 AACAAAGTACACGAAGTTGCAA 57.311 36.364 0.00 0.00 41.61 4.08
5599 8297 2.701107 TCTGGTCGTTGAACACAAACA 58.299 42.857 0.00 0.00 0.00 2.83
5620 8318 0.822121 GGGGTTCTGTGACGCCTTTT 60.822 55.000 10.88 0.00 46.07 2.27
5820 8518 4.158025 ACTTTGATGATCCGACTACGAACT 59.842 41.667 0.00 0.00 42.66 3.01
5845 8543 3.751175 TGGCTATCGTTTTGGAAGAAGTG 59.249 43.478 0.00 0.00 0.00 3.16
5851 8549 2.570415 TGGTGGCTATCGTTTTGGAA 57.430 45.000 0.00 0.00 0.00 3.53
5918 8616 0.951040 CTCACCGAGCAACCTGGAAC 60.951 60.000 0.00 0.00 0.00 3.62
5964 8662 6.010850 AGTGTAGGTATGAAGAACAGACTCA 58.989 40.000 0.00 0.00 40.17 3.41
6175 8879 1.574925 CAGCAGCGATGATGATGGC 59.425 57.895 14.78 0.00 31.48 4.40
6181 8885 1.678123 GGATATGGCAGCAGCGATGAT 60.678 52.381 4.02 0.00 39.66 2.45
6210 8914 0.884704 GCGGTGGTGGTATATGGCAG 60.885 60.000 0.00 0.00 0.00 4.85
6243 8947 2.559231 TCGATGGTATATGGCAGCGTTA 59.441 45.455 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.