Multiple sequence alignment - TraesCS7D01G286700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G286700 chr7D 100.000 3077 0 0 1 3077 310282063 310285139 0.000000e+00 5683
1 TraesCS7D01G286700 chr5D 97.966 2753 52 3 327 3077 35838428 35841178 0.000000e+00 4771
2 TraesCS7D01G286700 chr5D 98.489 2316 34 1 762 3077 174858149 174855835 0.000000e+00 4082
3 TraesCS7D01G286700 chr5D 97.284 405 11 0 328 732 174858549 174858145 0.000000e+00 688
4 TraesCS7D01G286700 chr5D 97.095 241 6 1 326 566 174853524 174853763 3.690000e-109 405
5 TraesCS7D01G286700 chr5A 97.310 2751 71 2 327 3077 616139534 616142281 0.000000e+00 4667
6 TraesCS7D01G286700 chr6D 98.490 2318 34 1 760 3077 12676888 12674572 0.000000e+00 4085
7 TraesCS7D01G286700 chr6D 97.421 349 9 0 324 672 105551802 105551454 2.040000e-166 595
8 TraesCS7D01G286700 chr6D 97.406 347 9 0 326 672 12677225 12676879 2.640000e-165 592
9 TraesCS7D01G286700 chr1B 90.474 2278 159 19 331 2568 135265146 135262887 0.000000e+00 2952
10 TraesCS7D01G286700 chr3B 97.045 1726 44 1 926 2651 571889473 571891191 0.000000e+00 2898
11 TraesCS7D01G286700 chr3B 95.333 600 26 2 329 928 571887465 571888062 0.000000e+00 952
12 TraesCS7D01G286700 chr3B 91.411 326 28 0 2 327 665875579 665875904 6.050000e-122 448
13 TraesCS7D01G286700 chr4A 94.997 1799 69 3 1297 3077 743947211 743945416 0.000000e+00 2804
14 TraesCS7D01G286700 chr4A 94.223 727 39 2 540 1265 743948041 743947317 0.000000e+00 1107
15 TraesCS7D01G286700 chr2A 95.656 1266 51 3 325 1589 733658390 733659652 0.000000e+00 2030
16 TraesCS7D01G286700 chr4B 96.629 1068 16 6 2010 3077 469056835 469055788 0.000000e+00 1755
17 TraesCS7D01G286700 chr2B 91.743 327 26 1 2 327 222034661 222034335 1.300000e-123 453
18 TraesCS7D01G286700 chr2B 91.104 326 28 1 3 327 242935187 242935512 1.010000e-119 440
19 TraesCS7D01G286700 chr2D 91.463 328 27 1 1 327 466816941 466816614 1.680000e-122 449
20 TraesCS7D01G286700 chr2D 92.114 317 25 0 2 318 423087378 423087694 6.050000e-122 448
21 TraesCS7D01G286700 chrUn 91.104 326 29 0 2 327 280331822 280332147 2.820000e-120 442
22 TraesCS7D01G286700 chrUn 91.104 326 29 0 2 327 280338848 280339173 2.820000e-120 442
23 TraesCS7D01G286700 chrUn 91.104 326 29 0 2 327 347883024 347882699 2.820000e-120 442
24 TraesCS7D01G286700 chr3D 91.131 327 28 1 2 327 118557403 118557729 2.820000e-120 442


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G286700 chr7D 310282063 310285139 3076 False 5683.0 5683 100.0000 1 3077 1 chr7D.!!$F1 3076
1 TraesCS7D01G286700 chr5D 35838428 35841178 2750 False 4771.0 4771 97.9660 327 3077 1 chr5D.!!$F1 2750
2 TraesCS7D01G286700 chr5D 174855835 174858549 2714 True 2385.0 4082 97.8865 328 3077 2 chr5D.!!$R1 2749
3 TraesCS7D01G286700 chr5A 616139534 616142281 2747 False 4667.0 4667 97.3100 327 3077 1 chr5A.!!$F1 2750
4 TraesCS7D01G286700 chr6D 12674572 12677225 2653 True 2338.5 4085 97.9480 326 3077 2 chr6D.!!$R2 2751
5 TraesCS7D01G286700 chr1B 135262887 135265146 2259 True 2952.0 2952 90.4740 331 2568 1 chr1B.!!$R1 2237
6 TraesCS7D01G286700 chr3B 571887465 571891191 3726 False 1925.0 2898 96.1890 329 2651 2 chr3B.!!$F2 2322
7 TraesCS7D01G286700 chr4A 743945416 743948041 2625 True 1955.5 2804 94.6100 540 3077 2 chr4A.!!$R1 2537
8 TraesCS7D01G286700 chr2A 733658390 733659652 1262 False 2030.0 2030 95.6560 325 1589 1 chr2A.!!$F1 1264
9 TraesCS7D01G286700 chr4B 469055788 469056835 1047 True 1755.0 1755 96.6290 2010 3077 1 chr4B.!!$R1 1067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
265 266 0.031111 AGTATGCACCCTAGGCCTCA 60.031 55.0 9.68 0.0 0.00 3.86 F
1352 2848 0.251033 ATGCCAGAAGAGCAAGTGCA 60.251 50.0 6.00 0.0 44.83 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1495 2991 0.178967 TCAATGTTGCCAGCCCTGAA 60.179 50.000 0.0 0.0 0.0 3.02 R
2685 4201 4.134563 GTTTCTGCCAGTCCTTGTTTCTA 58.865 43.478 0.0 0.0 0.0 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.737254 CATGGTGTTATTTTAGGACGAACT 57.263 37.500 0.00 0.00 0.00 3.01
24 25 6.772078 CATGGTGTTATTTTAGGACGAACTC 58.228 40.000 0.00 0.00 0.00 3.01
25 26 6.105397 TGGTGTTATTTTAGGACGAACTCT 57.895 37.500 0.00 0.00 0.00 3.24
26 27 6.527423 TGGTGTTATTTTAGGACGAACTCTT 58.473 36.000 0.00 0.00 0.00 2.85
27 28 6.425721 TGGTGTTATTTTAGGACGAACTCTTG 59.574 38.462 0.00 0.00 0.00 3.02
28 29 6.128363 GGTGTTATTTTAGGACGAACTCTTGG 60.128 42.308 0.00 0.00 0.00 3.61
29 30 6.647895 GTGTTATTTTAGGACGAACTCTTGGA 59.352 38.462 0.00 0.00 0.00 3.53
30 31 7.333672 GTGTTATTTTAGGACGAACTCTTGGAT 59.666 37.037 0.00 0.00 0.00 3.41
31 32 8.533657 TGTTATTTTAGGACGAACTCTTGGATA 58.466 33.333 0.00 0.00 0.00 2.59
32 33 9.032420 GTTATTTTAGGACGAACTCTTGGATAG 57.968 37.037 0.00 0.00 0.00 2.08
33 34 6.845758 TTTTAGGACGAACTCTTGGATAGA 57.154 37.500 0.00 0.00 0.00 1.98
34 35 7.419711 TTTTAGGACGAACTCTTGGATAGAT 57.580 36.000 0.00 0.00 30.92 1.98
35 36 6.636562 TTAGGACGAACTCTTGGATAGATC 57.363 41.667 0.00 0.00 30.92 2.75
36 37 3.566322 AGGACGAACTCTTGGATAGATCG 59.434 47.826 0.00 0.00 39.91 3.69
37 38 3.564644 GGACGAACTCTTGGATAGATCGA 59.435 47.826 9.30 0.00 37.51 3.59
38 39 4.216687 GGACGAACTCTTGGATAGATCGAT 59.783 45.833 0.00 0.00 37.51 3.59
39 40 5.365403 ACGAACTCTTGGATAGATCGATC 57.635 43.478 17.91 17.91 37.51 3.69
40 41 4.083749 ACGAACTCTTGGATAGATCGATCG 60.084 45.833 19.33 9.36 37.51 3.69
41 42 4.152580 CGAACTCTTGGATAGATCGATCGA 59.847 45.833 21.86 21.86 37.51 3.59
42 43 5.334182 CGAACTCTTGGATAGATCGATCGAA 60.334 44.000 23.50 12.33 37.51 3.71
43 44 6.392625 AACTCTTGGATAGATCGATCGAAA 57.607 37.500 23.50 11.17 30.92 3.46
44 45 6.392625 ACTCTTGGATAGATCGATCGAAAA 57.607 37.500 23.50 10.79 30.92 2.29
45 46 6.442952 ACTCTTGGATAGATCGATCGAAAAG 58.557 40.000 23.50 17.37 30.92 2.27
46 47 5.773575 TCTTGGATAGATCGATCGAAAAGG 58.226 41.667 23.50 8.83 0.00 3.11
47 48 5.535030 TCTTGGATAGATCGATCGAAAAGGA 59.465 40.000 23.50 6.46 0.00 3.36
48 49 5.984695 TGGATAGATCGATCGAAAAGGAT 57.015 39.130 23.50 11.06 0.00 3.24
49 50 7.393515 TCTTGGATAGATCGATCGAAAAGGATA 59.606 37.037 23.50 9.01 0.00 2.59
50 51 7.462571 TGGATAGATCGATCGAAAAGGATAA 57.537 36.000 23.50 2.07 0.00 1.75
51 52 7.313646 TGGATAGATCGATCGAAAAGGATAAC 58.686 38.462 23.50 7.81 0.00 1.89
52 53 7.176865 TGGATAGATCGATCGAAAAGGATAACT 59.823 37.037 23.50 11.73 0.00 2.24
53 54 8.030106 GGATAGATCGATCGAAAAGGATAACTT 58.970 37.037 23.50 0.00 42.52 2.66
54 55 8.749841 ATAGATCGATCGAAAAGGATAACTTG 57.250 34.615 23.50 0.00 39.96 3.16
55 56 5.986135 AGATCGATCGAAAAGGATAACTTGG 59.014 40.000 23.50 0.00 39.96 3.61
56 57 5.080969 TCGATCGAAAAGGATAACTTGGT 57.919 39.130 16.99 0.00 39.96 3.67
57 58 4.868171 TCGATCGAAAAGGATAACTTGGTG 59.132 41.667 16.99 0.00 39.96 4.17
58 59 4.630069 CGATCGAAAAGGATAACTTGGTGT 59.370 41.667 10.26 0.00 39.96 4.16
59 60 5.121768 CGATCGAAAAGGATAACTTGGTGTT 59.878 40.000 10.26 0.00 39.96 3.32
60 61 5.682943 TCGAAAAGGATAACTTGGTGTTG 57.317 39.130 0.00 0.00 39.96 3.33
61 62 5.127491 TCGAAAAGGATAACTTGGTGTTGT 58.873 37.500 0.00 0.00 39.96 3.32
62 63 5.591067 TCGAAAAGGATAACTTGGTGTTGTT 59.409 36.000 0.00 0.00 39.96 2.83
63 64 6.095720 TCGAAAAGGATAACTTGGTGTTGTTT 59.904 34.615 0.00 0.00 39.96 2.83
64 65 6.754675 CGAAAAGGATAACTTGGTGTTGTTTT 59.245 34.615 0.00 0.00 39.96 2.43
65 66 7.916450 CGAAAAGGATAACTTGGTGTTGTTTTA 59.084 33.333 0.00 0.00 39.96 1.52
66 67 9.244799 GAAAAGGATAACTTGGTGTTGTTTTAG 57.755 33.333 0.00 0.00 39.96 1.85
67 68 7.891498 AAGGATAACTTGGTGTTGTTTTAGT 57.109 32.000 0.00 0.00 39.55 2.24
68 69 8.983702 AAGGATAACTTGGTGTTGTTTTAGTA 57.016 30.769 0.00 0.00 39.55 1.82
69 70 8.387190 AGGATAACTTGGTGTTGTTTTAGTAC 57.613 34.615 0.00 0.00 39.55 2.73
70 71 7.172019 AGGATAACTTGGTGTTGTTTTAGTACG 59.828 37.037 0.00 0.00 39.55 3.67
71 72 7.171337 GGATAACTTGGTGTTGTTTTAGTACGA 59.829 37.037 0.00 0.00 39.55 3.43
72 73 6.740411 AACTTGGTGTTGTTTTAGTACGAA 57.260 33.333 0.00 0.00 37.52 3.85
73 74 6.110543 ACTTGGTGTTGTTTTAGTACGAAC 57.889 37.500 0.00 0.00 0.00 3.95
74 75 5.876460 ACTTGGTGTTGTTTTAGTACGAACT 59.124 36.000 0.00 0.00 39.91 3.01
75 76 5.971895 TGGTGTTGTTTTAGTACGAACTC 57.028 39.130 0.00 0.00 37.15 3.01
76 77 4.503734 TGGTGTTGTTTTAGTACGAACTCG 59.496 41.667 0.00 0.00 46.33 4.18
77 78 4.084900 GGTGTTGTTTTAGTACGAACTCGG 60.085 45.833 3.88 0.00 44.95 4.63
78 79 4.504097 GTGTTGTTTTAGTACGAACTCGGT 59.496 41.667 3.88 0.00 44.95 4.69
79 80 4.503734 TGTTGTTTTAGTACGAACTCGGTG 59.496 41.667 3.88 0.00 44.95 4.94
80 81 4.566545 TGTTTTAGTACGAACTCGGTGA 57.433 40.909 3.88 0.00 44.95 4.02
81 82 5.125100 TGTTTTAGTACGAACTCGGTGAT 57.875 39.130 3.88 0.00 44.95 3.06
82 83 6.252967 TGTTTTAGTACGAACTCGGTGATA 57.747 37.500 3.88 0.00 44.95 2.15
83 84 6.317088 TGTTTTAGTACGAACTCGGTGATAG 58.683 40.000 3.88 0.00 44.95 2.08
84 85 6.149308 TGTTTTAGTACGAACTCGGTGATAGA 59.851 38.462 3.88 0.00 44.95 1.98
85 86 6.932356 TTTAGTACGAACTCGGTGATAGAT 57.068 37.500 3.88 0.00 44.95 1.98
86 87 6.536731 TTAGTACGAACTCGGTGATAGATC 57.463 41.667 3.88 0.00 44.95 2.75
87 88 3.493877 AGTACGAACTCGGTGATAGATCG 59.506 47.826 3.88 0.00 42.76 3.69
88 89 2.558378 ACGAACTCGGTGATAGATCGA 58.442 47.619 9.30 0.00 40.47 3.59
89 90 3.139850 ACGAACTCGGTGATAGATCGAT 58.860 45.455 0.00 0.00 40.47 3.59
90 91 3.186817 ACGAACTCGGTGATAGATCGATC 59.813 47.826 17.91 17.91 40.47 3.69
91 92 3.722374 CGAACTCGGTGATAGATCGATCG 60.722 52.174 19.33 9.36 40.47 3.69
92 93 2.077627 ACTCGGTGATAGATCGATCGG 58.922 52.381 19.33 4.94 32.32 4.18
93 94 1.398739 CTCGGTGATAGATCGATCGGG 59.601 57.143 19.33 2.77 32.32 5.14
94 95 1.002773 TCGGTGATAGATCGATCGGGA 59.997 52.381 19.33 9.67 0.00 5.14
95 96 1.810755 CGGTGATAGATCGATCGGGAA 59.189 52.381 19.33 7.42 0.00 3.97
96 97 2.159503 CGGTGATAGATCGATCGGGAAG 60.160 54.545 19.33 5.96 0.00 3.46
97 98 2.164624 GGTGATAGATCGATCGGGAAGG 59.835 54.545 19.33 0.00 0.00 3.46
98 99 3.082548 GTGATAGATCGATCGGGAAGGA 58.917 50.000 19.33 0.00 0.00 3.36
99 100 3.697045 GTGATAGATCGATCGGGAAGGAT 59.303 47.826 19.33 0.00 0.00 3.24
100 101 4.882427 GTGATAGATCGATCGGGAAGGATA 59.118 45.833 19.33 4.62 0.00 2.59
101 102 5.357314 GTGATAGATCGATCGGGAAGGATAA 59.643 44.000 19.33 0.00 0.00 1.75
102 103 5.357314 TGATAGATCGATCGGGAAGGATAAC 59.643 44.000 19.33 3.99 0.00 1.89
103 104 3.768878 AGATCGATCGGGAAGGATAACT 58.231 45.455 19.33 0.00 0.00 2.24
104 105 4.153411 AGATCGATCGGGAAGGATAACTT 58.847 43.478 19.33 0.00 43.65 2.66
105 106 4.589374 AGATCGATCGGGAAGGATAACTTT 59.411 41.667 19.33 0.00 40.21 2.66
106 107 4.054780 TCGATCGGGAAGGATAACTTTG 57.945 45.455 16.41 0.00 40.21 2.77
107 108 3.702548 TCGATCGGGAAGGATAACTTTGA 59.297 43.478 16.41 0.00 40.21 2.69
108 109 4.051922 CGATCGGGAAGGATAACTTTGAG 58.948 47.826 7.38 0.00 40.21 3.02
109 110 3.906720 TCGGGAAGGATAACTTTGAGG 57.093 47.619 0.00 0.00 40.21 3.86
110 111 3.178865 TCGGGAAGGATAACTTTGAGGT 58.821 45.455 0.00 0.00 40.21 3.85
111 112 3.055385 TCGGGAAGGATAACTTTGAGGTG 60.055 47.826 0.00 0.00 40.21 4.00
112 113 3.621558 GGGAAGGATAACTTTGAGGTGG 58.378 50.000 0.00 0.00 40.21 4.61
113 114 3.010250 GGGAAGGATAACTTTGAGGTGGT 59.990 47.826 0.00 0.00 40.21 4.16
114 115 4.508584 GGGAAGGATAACTTTGAGGTGGTT 60.509 45.833 0.00 0.00 40.21 3.67
115 116 5.077564 GGAAGGATAACTTTGAGGTGGTTT 58.922 41.667 0.00 0.00 40.21 3.27
116 117 5.183331 GGAAGGATAACTTTGAGGTGGTTTC 59.817 44.000 0.00 0.00 40.21 2.78
117 118 5.319043 AGGATAACTTTGAGGTGGTTTCA 57.681 39.130 0.00 0.00 0.00 2.69
118 119 5.892348 AGGATAACTTTGAGGTGGTTTCAT 58.108 37.500 0.00 0.00 0.00 2.57
119 120 7.027874 AGGATAACTTTGAGGTGGTTTCATA 57.972 36.000 0.00 0.00 0.00 2.15
120 121 6.884836 AGGATAACTTTGAGGTGGTTTCATAC 59.115 38.462 0.00 0.00 0.00 2.39
134 135 6.644248 GGTTTCATACCCTACAAACAACTT 57.356 37.500 0.00 0.00 41.43 2.66
135 136 7.748691 GGTTTCATACCCTACAAACAACTTA 57.251 36.000 0.00 0.00 41.43 2.24
136 137 8.344446 GGTTTCATACCCTACAAACAACTTAT 57.656 34.615 0.00 0.00 41.43 1.73
137 138 8.799367 GGTTTCATACCCTACAAACAACTTATT 58.201 33.333 0.00 0.00 41.43 1.40
138 139 9.836076 GTTTCATACCCTACAAACAACTTATTC 57.164 33.333 0.00 0.00 0.00 1.75
139 140 9.802039 TTTCATACCCTACAAACAACTTATTCT 57.198 29.630 0.00 0.00 0.00 2.40
140 141 9.802039 TTCATACCCTACAAACAACTTATTCTT 57.198 29.630 0.00 0.00 0.00 2.52
145 146 9.582648 ACCCTACAAACAACTTATTCTTATGTT 57.417 29.630 0.00 0.00 35.86 2.71
149 150 7.892609 ACAAACAACTTATTCTTATGTTCCCC 58.107 34.615 0.00 0.00 33.39 4.81
150 151 6.753107 AACAACTTATTCTTATGTTCCCCG 57.247 37.500 0.00 0.00 28.61 5.73
151 152 4.638865 ACAACTTATTCTTATGTTCCCCGC 59.361 41.667 0.00 0.00 0.00 6.13
152 153 4.772886 ACTTATTCTTATGTTCCCCGCT 57.227 40.909 0.00 0.00 0.00 5.52
153 154 5.881923 ACTTATTCTTATGTTCCCCGCTA 57.118 39.130 0.00 0.00 0.00 4.26
154 155 5.855045 ACTTATTCTTATGTTCCCCGCTAG 58.145 41.667 0.00 0.00 0.00 3.42
155 156 5.601313 ACTTATTCTTATGTTCCCCGCTAGA 59.399 40.000 0.00 0.00 0.00 2.43
156 157 6.270231 ACTTATTCTTATGTTCCCCGCTAGAT 59.730 38.462 0.00 0.00 0.00 1.98
157 158 7.453752 ACTTATTCTTATGTTCCCCGCTAGATA 59.546 37.037 0.00 0.00 0.00 1.98
158 159 6.875972 ATTCTTATGTTCCCCGCTAGATAT 57.124 37.500 0.00 0.00 0.00 1.63
159 160 5.661056 TCTTATGTTCCCCGCTAGATATG 57.339 43.478 0.00 0.00 0.00 1.78
160 161 5.330233 TCTTATGTTCCCCGCTAGATATGA 58.670 41.667 0.00 0.00 0.00 2.15
161 162 5.778241 TCTTATGTTCCCCGCTAGATATGAA 59.222 40.000 0.00 0.00 0.00 2.57
162 163 3.746045 TGTTCCCCGCTAGATATGAAC 57.254 47.619 0.00 1.46 34.25 3.18
163 164 3.305720 TGTTCCCCGCTAGATATGAACT 58.694 45.455 13.31 0.00 34.63 3.01
164 165 3.709653 TGTTCCCCGCTAGATATGAACTT 59.290 43.478 13.31 0.00 34.63 2.66
165 166 4.163458 TGTTCCCCGCTAGATATGAACTTT 59.837 41.667 13.31 0.00 34.63 2.66
166 167 4.336889 TCCCCGCTAGATATGAACTTTG 57.663 45.455 0.00 0.00 0.00 2.77
167 168 3.071023 TCCCCGCTAGATATGAACTTTGG 59.929 47.826 0.00 0.00 0.00 3.28
168 169 3.071023 CCCCGCTAGATATGAACTTTGGA 59.929 47.826 0.00 0.00 0.00 3.53
169 170 4.310769 CCCGCTAGATATGAACTTTGGAG 58.689 47.826 0.00 0.00 0.00 3.86
170 171 4.202264 CCCGCTAGATATGAACTTTGGAGT 60.202 45.833 0.00 0.00 37.87 3.85
171 172 4.747108 CCGCTAGATATGAACTTTGGAGTG 59.253 45.833 0.00 0.00 35.91 3.51
172 173 5.451937 CCGCTAGATATGAACTTTGGAGTGA 60.452 44.000 0.00 0.00 35.91 3.41
173 174 6.219473 CGCTAGATATGAACTTTGGAGTGAT 58.781 40.000 0.00 0.00 35.91 3.06
174 175 6.703607 CGCTAGATATGAACTTTGGAGTGATT 59.296 38.462 0.00 0.00 35.91 2.57
175 176 7.307042 CGCTAGATATGAACTTTGGAGTGATTG 60.307 40.741 0.00 0.00 35.91 2.67
176 177 7.497249 GCTAGATATGAACTTTGGAGTGATTGT 59.503 37.037 0.00 0.00 35.91 2.71
177 178 9.388506 CTAGATATGAACTTTGGAGTGATTGTT 57.611 33.333 0.00 0.00 35.91 2.83
178 179 8.273780 AGATATGAACTTTGGAGTGATTGTTC 57.726 34.615 0.00 0.00 35.91 3.18
179 180 7.884877 AGATATGAACTTTGGAGTGATTGTTCA 59.115 33.333 8.46 8.46 44.70 3.18
180 181 6.906157 ATGAACTTTGGAGTGATTGTTCAT 57.094 33.333 11.75 11.75 44.56 2.57
181 182 6.713762 TGAACTTTGGAGTGATTGTTCATT 57.286 33.333 0.00 0.00 38.81 2.57
182 183 6.506147 TGAACTTTGGAGTGATTGTTCATTG 58.494 36.000 0.00 0.00 38.81 2.82
183 184 4.874970 ACTTTGGAGTGATTGTTCATTGC 58.125 39.130 0.00 0.00 33.99 3.56
184 185 4.341806 ACTTTGGAGTGATTGTTCATTGCA 59.658 37.500 0.00 0.00 37.98 4.08
185 186 3.921119 TGGAGTGATTGTTCATTGCAC 57.079 42.857 0.00 0.00 35.50 4.57
186 187 2.226200 TGGAGTGATTGTTCATTGCACG 59.774 45.455 0.00 0.00 35.50 5.34
187 188 2.226437 GGAGTGATTGTTCATTGCACGT 59.774 45.455 0.00 0.00 33.56 4.49
188 189 3.304659 GGAGTGATTGTTCATTGCACGTT 60.305 43.478 0.00 0.00 33.56 3.99
189 190 3.631144 AGTGATTGTTCATTGCACGTTG 58.369 40.909 0.00 0.00 33.56 4.10
190 191 3.314913 AGTGATTGTTCATTGCACGTTGA 59.685 39.130 0.00 0.00 33.56 3.18
191 192 3.665409 GTGATTGTTCATTGCACGTTGAG 59.335 43.478 0.00 0.00 33.56 3.02
192 193 2.772568 TTGTTCATTGCACGTTGAGG 57.227 45.000 0.00 0.00 0.00 3.86
193 194 0.950836 TGTTCATTGCACGTTGAGGG 59.049 50.000 0.00 0.00 0.00 4.30
194 195 1.234821 GTTCATTGCACGTTGAGGGA 58.765 50.000 0.00 0.00 0.00 4.20
195 196 1.812571 GTTCATTGCACGTTGAGGGAT 59.187 47.619 0.00 0.00 0.00 3.85
196 197 1.452110 TCATTGCACGTTGAGGGATG 58.548 50.000 0.00 0.00 0.00 3.51
197 198 0.452987 CATTGCACGTTGAGGGATGG 59.547 55.000 0.00 0.00 0.00 3.51
198 199 0.038166 ATTGCACGTTGAGGGATGGT 59.962 50.000 0.00 0.00 0.00 3.55
199 200 0.179004 TTGCACGTTGAGGGATGGTT 60.179 50.000 0.00 0.00 0.00 3.67
200 201 0.687920 TGCACGTTGAGGGATGGTTA 59.312 50.000 0.00 0.00 0.00 2.85
201 202 1.280710 TGCACGTTGAGGGATGGTTAT 59.719 47.619 0.00 0.00 0.00 1.89
202 203 2.502130 TGCACGTTGAGGGATGGTTATA 59.498 45.455 0.00 0.00 0.00 0.98
203 204 3.135712 TGCACGTTGAGGGATGGTTATAT 59.864 43.478 0.00 0.00 0.00 0.86
204 205 3.498397 GCACGTTGAGGGATGGTTATATG 59.502 47.826 0.00 0.00 0.00 1.78
205 206 4.742440 GCACGTTGAGGGATGGTTATATGA 60.742 45.833 0.00 0.00 0.00 2.15
206 207 5.551233 CACGTTGAGGGATGGTTATATGAT 58.449 41.667 0.00 0.00 0.00 2.45
207 208 5.639506 CACGTTGAGGGATGGTTATATGATC 59.360 44.000 0.00 0.00 0.00 2.92
208 209 5.178797 CGTTGAGGGATGGTTATATGATCC 58.821 45.833 0.00 0.00 35.78 3.36
209 210 5.279960 CGTTGAGGGATGGTTATATGATCCA 60.280 44.000 0.00 0.00 37.92 3.41
210 211 6.542821 GTTGAGGGATGGTTATATGATCCAA 58.457 40.000 0.00 0.00 37.92 3.53
211 212 6.975471 TGAGGGATGGTTATATGATCCAAT 57.025 37.500 0.00 0.00 37.92 3.16
212 213 7.347319 TGAGGGATGGTTATATGATCCAATT 57.653 36.000 0.00 0.00 37.92 2.32
213 214 8.461685 TGAGGGATGGTTATATGATCCAATTA 57.538 34.615 0.00 0.00 37.92 1.40
214 215 9.072460 TGAGGGATGGTTATATGATCCAATTAT 57.928 33.333 0.00 0.00 37.92 1.28
228 229 8.394971 TGATCCAATTATATTAGCACTGTTGG 57.605 34.615 0.00 0.00 36.95 3.77
229 230 7.448161 TGATCCAATTATATTAGCACTGTTGGG 59.552 37.037 0.00 0.00 36.42 4.12
230 231 6.905736 TCCAATTATATTAGCACTGTTGGGA 58.094 36.000 0.00 0.00 36.42 4.37
231 232 6.998074 TCCAATTATATTAGCACTGTTGGGAG 59.002 38.462 0.00 0.00 36.42 4.30
232 233 6.998074 CCAATTATATTAGCACTGTTGGGAGA 59.002 38.462 0.00 0.00 33.10 3.71
233 234 7.667219 CCAATTATATTAGCACTGTTGGGAGAT 59.333 37.037 0.00 0.00 33.10 2.75
234 235 9.071276 CAATTATATTAGCACTGTTGGGAGATT 57.929 33.333 0.00 0.00 0.00 2.40
235 236 8.627208 ATTATATTAGCACTGTTGGGAGATTG 57.373 34.615 0.00 0.00 0.00 2.67
236 237 2.113860 TAGCACTGTTGGGAGATTGC 57.886 50.000 0.00 0.00 0.00 3.56
237 238 0.111061 AGCACTGTTGGGAGATTGCA 59.889 50.000 0.00 0.00 32.24 4.08
238 239 0.242017 GCACTGTTGGGAGATTGCAC 59.758 55.000 0.00 0.00 0.00 4.57
239 240 1.901591 CACTGTTGGGAGATTGCACT 58.098 50.000 0.00 0.00 0.00 4.40
240 241 2.875672 GCACTGTTGGGAGATTGCACTA 60.876 50.000 0.00 0.00 0.00 2.74
241 242 3.005554 CACTGTTGGGAGATTGCACTAG 58.994 50.000 0.00 0.00 0.00 2.57
242 243 2.012673 CTGTTGGGAGATTGCACTAGC 58.987 52.381 0.00 0.00 42.57 3.42
243 244 1.009829 GTTGGGAGATTGCACTAGCG 58.990 55.000 0.00 0.00 46.23 4.26
244 245 0.901827 TTGGGAGATTGCACTAGCGA 59.098 50.000 0.00 0.00 46.23 4.93
245 246 0.901827 TGGGAGATTGCACTAGCGAA 59.098 50.000 0.00 0.00 46.23 4.70
246 247 1.277842 TGGGAGATTGCACTAGCGAAA 59.722 47.619 0.00 0.00 46.23 3.46
247 248 1.936547 GGGAGATTGCACTAGCGAAAG 59.063 52.381 0.00 0.00 46.23 2.62
248 249 2.622436 GGAGATTGCACTAGCGAAAGT 58.378 47.619 0.00 0.00 46.23 2.66
249 250 3.430374 GGGAGATTGCACTAGCGAAAGTA 60.430 47.826 0.00 0.00 46.23 2.24
250 251 4.372656 GGAGATTGCACTAGCGAAAGTAT 58.627 43.478 0.00 0.00 46.23 2.12
251 252 4.210120 GGAGATTGCACTAGCGAAAGTATG 59.790 45.833 0.00 0.00 46.23 2.39
252 253 3.557595 AGATTGCACTAGCGAAAGTATGC 59.442 43.478 0.00 0.00 46.23 3.14
253 254 2.378445 TGCACTAGCGAAAGTATGCA 57.622 45.000 0.00 0.00 46.23 3.96
254 255 1.999735 TGCACTAGCGAAAGTATGCAC 59.000 47.619 0.00 0.00 46.23 4.57
255 256 1.327764 GCACTAGCGAAAGTATGCACC 59.672 52.381 0.00 0.00 0.00 5.01
256 257 1.933853 CACTAGCGAAAGTATGCACCC 59.066 52.381 0.00 0.00 0.00 4.61
257 258 1.831736 ACTAGCGAAAGTATGCACCCT 59.168 47.619 0.00 0.00 0.00 4.34
258 259 3.028850 ACTAGCGAAAGTATGCACCCTA 58.971 45.455 0.00 0.00 0.00 3.53
259 260 2.604046 AGCGAAAGTATGCACCCTAG 57.396 50.000 0.00 0.00 0.00 3.02
260 261 1.139058 AGCGAAAGTATGCACCCTAGG 59.861 52.381 0.06 0.06 0.00 3.02
261 262 1.583054 CGAAAGTATGCACCCTAGGC 58.417 55.000 2.05 0.00 0.00 3.93
262 263 1.810412 CGAAAGTATGCACCCTAGGCC 60.810 57.143 2.05 0.00 0.00 5.19
263 264 1.490910 GAAAGTATGCACCCTAGGCCT 59.509 52.381 11.78 11.78 0.00 5.19
264 265 1.132500 AAGTATGCACCCTAGGCCTC 58.868 55.000 9.68 0.00 0.00 4.70
265 266 0.031111 AGTATGCACCCTAGGCCTCA 60.031 55.000 9.68 0.00 0.00 3.86
266 267 1.059913 GTATGCACCCTAGGCCTCAT 58.940 55.000 9.68 8.23 0.00 2.90
267 268 1.421646 GTATGCACCCTAGGCCTCATT 59.578 52.381 9.68 0.00 0.00 2.57
268 269 0.929244 ATGCACCCTAGGCCTCATTT 59.071 50.000 9.68 0.00 0.00 2.32
269 270 0.255890 TGCACCCTAGGCCTCATTTC 59.744 55.000 9.68 0.00 0.00 2.17
270 271 0.466372 GCACCCTAGGCCTCATTTCC 60.466 60.000 9.68 0.00 0.00 3.13
271 272 0.918983 CACCCTAGGCCTCATTTCCA 59.081 55.000 9.68 0.00 0.00 3.53
272 273 1.284785 CACCCTAGGCCTCATTTCCAA 59.715 52.381 9.68 0.00 0.00 3.53
273 274 1.566231 ACCCTAGGCCTCATTTCCAAG 59.434 52.381 9.68 0.00 0.00 3.61
274 275 1.685148 CCTAGGCCTCATTTCCAAGC 58.315 55.000 9.68 0.00 0.00 4.01
275 276 1.064463 CCTAGGCCTCATTTCCAAGCA 60.064 52.381 9.68 0.00 0.00 3.91
276 277 2.423947 CCTAGGCCTCATTTCCAAGCAT 60.424 50.000 9.68 0.00 0.00 3.79
277 278 2.242882 AGGCCTCATTTCCAAGCATT 57.757 45.000 0.00 0.00 0.00 3.56
290 291 3.976468 CAAGCATTGCAATACCGTTTG 57.024 42.857 12.53 10.58 40.39 2.93
291 292 3.316283 CAAGCATTGCAATACCGTTTGT 58.684 40.909 12.53 0.00 40.39 2.83
292 293 2.945278 AGCATTGCAATACCGTTTGTG 58.055 42.857 12.53 0.00 0.00 3.33
293 294 2.556189 AGCATTGCAATACCGTTTGTGA 59.444 40.909 12.53 0.00 0.00 3.58
294 295 3.193267 AGCATTGCAATACCGTTTGTGAT 59.807 39.130 12.53 0.00 0.00 3.06
295 296 3.547468 GCATTGCAATACCGTTTGTGATC 59.453 43.478 12.53 0.00 0.00 2.92
296 297 4.731720 CATTGCAATACCGTTTGTGATCA 58.268 39.130 12.53 0.00 0.00 2.92
297 298 3.822594 TGCAATACCGTTTGTGATCAC 57.177 42.857 19.27 19.27 0.00 3.06
298 299 3.407698 TGCAATACCGTTTGTGATCACT 58.592 40.909 25.55 7.77 0.00 3.41
299 300 3.818210 TGCAATACCGTTTGTGATCACTT 59.182 39.130 25.55 7.11 0.00 3.16
300 301 4.277174 TGCAATACCGTTTGTGATCACTTT 59.723 37.500 25.55 6.97 0.00 2.66
301 302 5.219633 GCAATACCGTTTGTGATCACTTTT 58.780 37.500 25.55 4.19 0.00 2.27
302 303 5.116983 GCAATACCGTTTGTGATCACTTTTG 59.883 40.000 25.55 15.61 0.00 2.44
303 304 6.205784 CAATACCGTTTGTGATCACTTTTGT 58.794 36.000 25.55 17.32 0.00 2.83
304 305 4.712122 ACCGTTTGTGATCACTTTTGTT 57.288 36.364 25.55 4.75 0.00 2.83
305 306 5.821516 ACCGTTTGTGATCACTTTTGTTA 57.178 34.783 25.55 1.39 0.00 2.41
306 307 5.575019 ACCGTTTGTGATCACTTTTGTTAC 58.425 37.500 25.55 11.76 0.00 2.50
307 308 5.355910 ACCGTTTGTGATCACTTTTGTTACT 59.644 36.000 25.55 0.00 0.00 2.24
308 309 6.127842 ACCGTTTGTGATCACTTTTGTTACTT 60.128 34.615 25.55 0.00 0.00 2.24
309 310 6.196353 CCGTTTGTGATCACTTTTGTTACTTG 59.804 38.462 25.55 4.40 0.00 3.16
310 311 6.745450 CGTTTGTGATCACTTTTGTTACTTGT 59.255 34.615 25.55 0.00 0.00 3.16
311 312 7.272515 CGTTTGTGATCACTTTTGTTACTTGTT 59.727 33.333 25.55 0.00 0.00 2.83
312 313 9.562583 GTTTGTGATCACTTTTGTTACTTGTTA 57.437 29.630 25.55 0.00 0.00 2.41
313 314 9.562583 TTTGTGATCACTTTTGTTACTTGTTAC 57.437 29.630 25.55 0.00 0.00 2.50
314 315 7.699566 TGTGATCACTTTTGTTACTTGTTACC 58.300 34.615 25.55 0.00 0.00 2.85
315 316 7.554835 TGTGATCACTTTTGTTACTTGTTACCT 59.445 33.333 25.55 0.00 0.00 3.08
316 317 8.403236 GTGATCACTTTTGTTACTTGTTACCTT 58.597 33.333 18.83 0.00 0.00 3.50
317 318 8.402472 TGATCACTTTTGTTACTTGTTACCTTG 58.598 33.333 0.00 0.00 0.00 3.61
318 319 7.090953 TCACTTTTGTTACTTGTTACCTTGG 57.909 36.000 0.00 0.00 0.00 3.61
319 320 6.660094 TCACTTTTGTTACTTGTTACCTTGGT 59.340 34.615 0.00 0.00 0.00 3.67
320 321 7.177041 TCACTTTTGTTACTTGTTACCTTGGTT 59.823 33.333 0.00 0.00 0.00 3.67
321 322 7.815549 CACTTTTGTTACTTGTTACCTTGGTTT 59.184 33.333 0.00 0.00 0.00 3.27
322 323 8.369424 ACTTTTGTTACTTGTTACCTTGGTTTT 58.631 29.630 0.00 0.00 0.00 2.43
323 324 9.210329 CTTTTGTTACTTGTTACCTTGGTTTTT 57.790 29.630 0.00 0.00 0.00 1.94
538 539 4.397348 GTCAAACAGACCGCCCAT 57.603 55.556 0.00 0.00 41.56 4.00
709 710 1.300620 GCGCCGATGCAGTATACCA 60.301 57.895 0.00 0.00 37.32 3.25
714 715 1.202639 CCGATGCAGTATACCAAGGCA 60.203 52.381 10.33 10.33 39.03 4.75
784 787 0.671796 CGCCGATCCAGTATACACCA 59.328 55.000 5.50 0.00 0.00 4.17
1033 2451 2.355108 GGAGGCAGTGAAGCTATGTCAA 60.355 50.000 0.00 0.00 34.17 3.18
1086 2504 3.511540 AGCTTTTGGGGCATTTAAGAGAC 59.488 43.478 0.00 0.00 0.00 3.36
1170 2588 8.868522 AGATGAATGATGGACTTGTTTTTCTA 57.131 30.769 0.00 0.00 0.00 2.10
1208 2626 4.216257 TGTTCTTAAGATGGCTGAGTTTGC 59.784 41.667 5.89 0.00 0.00 3.68
1306 2802 2.142356 CTCTGCTGGAGAGGAAGAGA 57.858 55.000 17.44 0.00 44.25 3.10
1352 2848 0.251033 ATGCCAGAAGAGCAAGTGCA 60.251 50.000 6.00 0.00 44.83 4.57
1392 2888 2.093288 TGATGCACAAGATGGAGAGTCC 60.093 50.000 0.00 0.00 36.96 3.85
1398 2894 2.692557 ACAAGATGGAGAGTCCGATGAG 59.307 50.000 0.00 0.00 40.17 2.90
1777 3273 5.991328 AATTACTTATGGACTGCATCACG 57.009 39.130 0.00 0.00 0.00 4.35
2874 4390 6.025749 TCCAACTGTGATAGTGTAGACAAG 57.974 41.667 0.00 0.00 40.26 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.594159 AGAGTTCGTCCTAAAATAACACCATG 59.406 38.462 0.00 0.00 0.00 3.66
1 2 6.708285 AGAGTTCGTCCTAAAATAACACCAT 58.292 36.000 0.00 0.00 0.00 3.55
2 3 6.105397 AGAGTTCGTCCTAAAATAACACCA 57.895 37.500 0.00 0.00 0.00 4.17
3 4 6.128363 CCAAGAGTTCGTCCTAAAATAACACC 60.128 42.308 0.00 0.00 0.00 4.16
4 5 6.647895 TCCAAGAGTTCGTCCTAAAATAACAC 59.352 38.462 0.00 0.00 0.00 3.32
5 6 6.761312 TCCAAGAGTTCGTCCTAAAATAACA 58.239 36.000 0.00 0.00 0.00 2.41
6 7 7.845066 ATCCAAGAGTTCGTCCTAAAATAAC 57.155 36.000 0.00 0.00 0.00 1.89
7 8 8.974238 TCTATCCAAGAGTTCGTCCTAAAATAA 58.026 33.333 0.00 0.00 0.00 1.40
8 9 8.529424 TCTATCCAAGAGTTCGTCCTAAAATA 57.471 34.615 0.00 0.00 0.00 1.40
9 10 7.419711 TCTATCCAAGAGTTCGTCCTAAAAT 57.580 36.000 0.00 0.00 0.00 1.82
10 11 6.845758 TCTATCCAAGAGTTCGTCCTAAAA 57.154 37.500 0.00 0.00 0.00 1.52
11 12 6.238676 CGATCTATCCAAGAGTTCGTCCTAAA 60.239 42.308 0.00 0.00 37.74 1.85
12 13 5.238868 CGATCTATCCAAGAGTTCGTCCTAA 59.761 44.000 0.00 0.00 37.74 2.69
13 14 4.755629 CGATCTATCCAAGAGTTCGTCCTA 59.244 45.833 0.00 0.00 37.74 2.94
14 15 3.566322 CGATCTATCCAAGAGTTCGTCCT 59.434 47.826 0.00 0.00 37.74 3.85
15 16 3.564644 TCGATCTATCCAAGAGTTCGTCC 59.435 47.826 0.00 0.00 37.76 4.79
16 17 4.815040 TCGATCTATCCAAGAGTTCGTC 57.185 45.455 0.00 0.00 37.76 4.20
17 18 4.083749 CGATCGATCTATCCAAGAGTTCGT 60.084 45.833 22.43 0.00 37.76 3.85
18 19 4.152580 TCGATCGATCTATCCAAGAGTTCG 59.847 45.833 22.43 6.41 37.84 3.95
19 20 5.614923 TCGATCGATCTATCCAAGAGTTC 57.385 43.478 22.43 0.00 37.74 3.01
20 21 6.392625 TTTCGATCGATCTATCCAAGAGTT 57.607 37.500 20.18 0.00 37.74 3.01
21 22 6.392625 TTTTCGATCGATCTATCCAAGAGT 57.607 37.500 20.18 0.00 37.74 3.24
22 23 5.861251 CCTTTTCGATCGATCTATCCAAGAG 59.139 44.000 20.18 5.74 37.74 2.85
23 24 5.535030 TCCTTTTCGATCGATCTATCCAAGA 59.465 40.000 20.18 8.18 39.02 3.02
24 25 5.773575 TCCTTTTCGATCGATCTATCCAAG 58.226 41.667 20.18 15.29 0.00 3.61
25 26 5.784578 TCCTTTTCGATCGATCTATCCAA 57.215 39.130 20.18 5.28 0.00 3.53
26 27 5.984695 ATCCTTTTCGATCGATCTATCCA 57.015 39.130 20.18 0.00 0.00 3.41
27 28 7.540299 AGTTATCCTTTTCGATCGATCTATCC 58.460 38.462 20.18 2.18 0.00 2.59
28 29 8.855279 CAAGTTATCCTTTTCGATCGATCTATC 58.145 37.037 20.18 5.64 0.00 2.08
29 30 7.815068 CCAAGTTATCCTTTTCGATCGATCTAT 59.185 37.037 20.18 10.74 0.00 1.98
30 31 7.145985 CCAAGTTATCCTTTTCGATCGATCTA 58.854 38.462 20.18 9.78 0.00 1.98
31 32 5.986135 CCAAGTTATCCTTTTCGATCGATCT 59.014 40.000 20.18 4.43 0.00 2.75
32 33 5.753921 ACCAAGTTATCCTTTTCGATCGATC 59.246 40.000 20.18 15.68 0.00 3.69
33 34 5.523916 CACCAAGTTATCCTTTTCGATCGAT 59.476 40.000 20.18 5.17 0.00 3.59
34 35 4.868171 CACCAAGTTATCCTTTTCGATCGA 59.132 41.667 15.15 15.15 0.00 3.59
35 36 4.630069 ACACCAAGTTATCCTTTTCGATCG 59.370 41.667 9.36 9.36 0.00 3.69
36 37 6.072673 ACAACACCAAGTTATCCTTTTCGATC 60.073 38.462 0.00 0.00 38.74 3.69
37 38 5.768164 ACAACACCAAGTTATCCTTTTCGAT 59.232 36.000 0.00 0.00 38.74 3.59
38 39 5.127491 ACAACACCAAGTTATCCTTTTCGA 58.873 37.500 0.00 0.00 38.74 3.71
39 40 5.432885 ACAACACCAAGTTATCCTTTTCG 57.567 39.130 0.00 0.00 38.74 3.46
40 41 9.244799 CTAAAACAACACCAAGTTATCCTTTTC 57.755 33.333 0.00 0.00 38.74 2.29
41 42 8.755028 ACTAAAACAACACCAAGTTATCCTTTT 58.245 29.630 0.00 0.00 38.74 2.27
42 43 8.301252 ACTAAAACAACACCAAGTTATCCTTT 57.699 30.769 0.00 0.00 38.74 3.11
43 44 7.891498 ACTAAAACAACACCAAGTTATCCTT 57.109 32.000 0.00 0.00 38.74 3.36
44 45 7.172019 CGTACTAAAACAACACCAAGTTATCCT 59.828 37.037 0.00 0.00 38.74 3.24
45 46 7.171337 TCGTACTAAAACAACACCAAGTTATCC 59.829 37.037 0.00 0.00 38.74 2.59
46 47 8.075593 TCGTACTAAAACAACACCAAGTTATC 57.924 34.615 0.00 0.00 38.74 1.75
47 48 8.337532 GTTCGTACTAAAACAACACCAAGTTAT 58.662 33.333 0.00 0.00 38.74 1.89
48 49 7.548780 AGTTCGTACTAAAACAACACCAAGTTA 59.451 33.333 0.00 0.00 33.53 2.24
49 50 6.372381 AGTTCGTACTAAAACAACACCAAGTT 59.628 34.615 0.00 0.00 34.92 2.66
50 51 5.876460 AGTTCGTACTAAAACAACACCAAGT 59.124 36.000 0.00 0.00 31.21 3.16
51 52 6.354039 AGTTCGTACTAAAACAACACCAAG 57.646 37.500 0.00 0.00 31.21 3.61
52 53 5.005586 CGAGTTCGTACTAAAACAACACCAA 59.994 40.000 0.00 0.00 33.84 3.67
53 54 4.503734 CGAGTTCGTACTAAAACAACACCA 59.496 41.667 0.00 0.00 33.84 4.17
54 55 4.084900 CCGAGTTCGTACTAAAACAACACC 60.085 45.833 0.00 0.00 37.74 4.16
55 56 4.504097 ACCGAGTTCGTACTAAAACAACAC 59.496 41.667 0.00 0.00 37.74 3.32
56 57 4.503734 CACCGAGTTCGTACTAAAACAACA 59.496 41.667 0.00 0.00 37.74 3.33
57 58 4.739716 TCACCGAGTTCGTACTAAAACAAC 59.260 41.667 0.00 0.00 37.74 3.32
58 59 4.930963 TCACCGAGTTCGTACTAAAACAA 58.069 39.130 0.00 0.00 37.74 2.83
59 60 4.566545 TCACCGAGTTCGTACTAAAACA 57.433 40.909 0.00 0.00 37.74 2.83
60 61 6.546395 TCTATCACCGAGTTCGTACTAAAAC 58.454 40.000 0.00 0.00 37.74 2.43
61 62 6.741992 TCTATCACCGAGTTCGTACTAAAA 57.258 37.500 0.00 0.00 37.74 1.52
62 63 6.292542 CGATCTATCACCGAGTTCGTACTAAA 60.293 42.308 0.00 0.00 37.74 1.85
63 64 5.176406 CGATCTATCACCGAGTTCGTACTAA 59.824 44.000 0.00 0.00 37.74 2.24
64 65 4.683320 CGATCTATCACCGAGTTCGTACTA 59.317 45.833 0.00 0.00 37.74 1.82
65 66 3.493877 CGATCTATCACCGAGTTCGTACT 59.506 47.826 0.00 0.00 37.74 2.73
66 67 3.492383 TCGATCTATCACCGAGTTCGTAC 59.508 47.826 0.48 0.00 37.40 3.67
67 68 3.721035 TCGATCTATCACCGAGTTCGTA 58.279 45.455 0.48 0.00 37.40 3.43
68 69 2.558378 TCGATCTATCACCGAGTTCGT 58.442 47.619 0.48 0.00 37.40 3.85
69 70 3.722374 CGATCGATCTATCACCGAGTTCG 60.722 52.174 22.43 2.42 37.44 3.95
70 71 3.425094 CCGATCGATCTATCACCGAGTTC 60.425 52.174 22.43 0.00 35.70 3.01
71 72 2.484651 CCGATCGATCTATCACCGAGTT 59.515 50.000 22.43 0.00 35.70 3.01
72 73 2.077627 CCGATCGATCTATCACCGAGT 58.922 52.381 22.43 0.00 35.70 4.18
73 74 1.398739 CCCGATCGATCTATCACCGAG 59.601 57.143 22.43 4.22 35.70 4.63
74 75 1.002773 TCCCGATCGATCTATCACCGA 59.997 52.381 22.43 5.12 36.72 4.69
75 76 1.450025 TCCCGATCGATCTATCACCG 58.550 55.000 22.43 8.50 0.00 4.94
76 77 2.164624 CCTTCCCGATCGATCTATCACC 59.835 54.545 22.43 0.00 0.00 4.02
77 78 3.082548 TCCTTCCCGATCGATCTATCAC 58.917 50.000 22.43 0.00 0.00 3.06
78 79 3.434940 TCCTTCCCGATCGATCTATCA 57.565 47.619 22.43 4.23 0.00 2.15
79 80 5.591067 AGTTATCCTTCCCGATCGATCTATC 59.409 44.000 22.43 5.64 0.00 2.08
80 81 5.511363 AGTTATCCTTCCCGATCGATCTAT 58.489 41.667 22.43 4.91 0.00 1.98
81 82 4.919793 AGTTATCCTTCCCGATCGATCTA 58.080 43.478 22.43 5.91 0.00 1.98
82 83 3.768878 AGTTATCCTTCCCGATCGATCT 58.231 45.455 22.43 4.43 0.00 2.75
83 84 4.522722 AAGTTATCCTTCCCGATCGATC 57.477 45.455 18.66 15.68 0.00 3.69
84 85 4.344102 TCAAAGTTATCCTTCCCGATCGAT 59.656 41.667 18.66 0.00 31.27 3.59
85 86 3.702548 TCAAAGTTATCCTTCCCGATCGA 59.297 43.478 18.66 0.00 31.27 3.59
86 87 4.051922 CTCAAAGTTATCCTTCCCGATCG 58.948 47.826 8.51 8.51 31.27 3.69
87 88 4.141688 ACCTCAAAGTTATCCTTCCCGATC 60.142 45.833 0.00 0.00 31.27 3.69
88 89 3.780850 ACCTCAAAGTTATCCTTCCCGAT 59.219 43.478 0.00 0.00 31.27 4.18
89 90 3.055385 CACCTCAAAGTTATCCTTCCCGA 60.055 47.826 0.00 0.00 31.27 5.14
90 91 3.270877 CACCTCAAAGTTATCCTTCCCG 58.729 50.000 0.00 0.00 31.27 5.14
91 92 3.010250 ACCACCTCAAAGTTATCCTTCCC 59.990 47.826 0.00 0.00 31.27 3.97
92 93 4.302559 ACCACCTCAAAGTTATCCTTCC 57.697 45.455 0.00 0.00 31.27 3.46
93 94 5.768164 TGAAACCACCTCAAAGTTATCCTTC 59.232 40.000 0.00 0.00 31.27 3.46
94 95 5.701224 TGAAACCACCTCAAAGTTATCCTT 58.299 37.500 0.00 0.00 33.79 3.36
95 96 5.319043 TGAAACCACCTCAAAGTTATCCT 57.681 39.130 0.00 0.00 0.00 3.24
96 97 7.085052 GTATGAAACCACCTCAAAGTTATCC 57.915 40.000 0.00 0.00 0.00 2.59
112 113 9.836076 GAATAAGTTGTTTGTAGGGTATGAAAC 57.164 33.333 0.00 0.00 0.00 2.78
113 114 9.802039 AGAATAAGTTGTTTGTAGGGTATGAAA 57.198 29.630 0.00 0.00 0.00 2.69
114 115 9.802039 AAGAATAAGTTGTTTGTAGGGTATGAA 57.198 29.630 0.00 0.00 0.00 2.57
119 120 9.582648 AACATAAGAATAAGTTGTTTGTAGGGT 57.417 29.630 0.00 0.00 0.00 4.34
123 124 9.016438 GGGGAACATAAGAATAAGTTGTTTGTA 57.984 33.333 0.00 0.00 31.09 2.41
124 125 7.308951 CGGGGAACATAAGAATAAGTTGTTTGT 60.309 37.037 0.00 0.00 31.09 2.83
125 126 7.027161 CGGGGAACATAAGAATAAGTTGTTTG 58.973 38.462 0.00 0.00 31.09 2.93
126 127 6.349860 GCGGGGAACATAAGAATAAGTTGTTT 60.350 38.462 0.00 0.00 31.09 2.83
127 128 5.124936 GCGGGGAACATAAGAATAAGTTGTT 59.875 40.000 0.00 0.00 33.47 2.83
128 129 4.638865 GCGGGGAACATAAGAATAAGTTGT 59.361 41.667 0.00 0.00 0.00 3.32
129 130 4.881850 AGCGGGGAACATAAGAATAAGTTG 59.118 41.667 0.00 0.00 0.00 3.16
130 131 5.112129 AGCGGGGAACATAAGAATAAGTT 57.888 39.130 0.00 0.00 0.00 2.66
131 132 4.772886 AGCGGGGAACATAAGAATAAGT 57.227 40.909 0.00 0.00 0.00 2.24
132 133 6.097915 TCTAGCGGGGAACATAAGAATAAG 57.902 41.667 0.00 0.00 0.00 1.73
133 134 6.681729 ATCTAGCGGGGAACATAAGAATAA 57.318 37.500 0.00 0.00 0.00 1.40
134 135 7.618117 TCATATCTAGCGGGGAACATAAGAATA 59.382 37.037 0.00 0.00 0.00 1.75
135 136 6.440647 TCATATCTAGCGGGGAACATAAGAAT 59.559 38.462 0.00 0.00 0.00 2.40
136 137 5.778241 TCATATCTAGCGGGGAACATAAGAA 59.222 40.000 0.00 0.00 0.00 2.52
137 138 5.330233 TCATATCTAGCGGGGAACATAAGA 58.670 41.667 0.00 0.00 0.00 2.10
138 139 5.661056 TCATATCTAGCGGGGAACATAAG 57.339 43.478 0.00 0.00 0.00 1.73
139 140 5.542635 AGTTCATATCTAGCGGGGAACATAA 59.457 40.000 14.98 0.00 37.64 1.90
140 141 5.084519 AGTTCATATCTAGCGGGGAACATA 58.915 41.667 14.98 0.00 37.64 2.29
141 142 3.904339 AGTTCATATCTAGCGGGGAACAT 59.096 43.478 14.98 3.49 37.64 2.71
142 143 3.305720 AGTTCATATCTAGCGGGGAACA 58.694 45.455 14.98 0.00 37.64 3.18
143 144 4.338379 AAGTTCATATCTAGCGGGGAAC 57.662 45.455 0.00 0.00 35.95 3.62
144 145 4.444306 CCAAAGTTCATATCTAGCGGGGAA 60.444 45.833 0.00 0.00 0.00 3.97
145 146 3.071023 CCAAAGTTCATATCTAGCGGGGA 59.929 47.826 0.00 0.00 0.00 4.81
146 147 3.071023 TCCAAAGTTCATATCTAGCGGGG 59.929 47.826 0.00 0.00 0.00 5.73
147 148 4.202264 ACTCCAAAGTTCATATCTAGCGGG 60.202 45.833 0.00 0.00 28.74 6.13
148 149 4.747108 CACTCCAAAGTTCATATCTAGCGG 59.253 45.833 0.00 0.00 31.71 5.52
149 150 5.592054 TCACTCCAAAGTTCATATCTAGCG 58.408 41.667 0.00 0.00 31.71 4.26
150 151 7.497249 ACAATCACTCCAAAGTTCATATCTAGC 59.503 37.037 0.00 0.00 31.71 3.42
151 152 8.954950 ACAATCACTCCAAAGTTCATATCTAG 57.045 34.615 0.00 0.00 31.71 2.43
152 153 9.383519 GAACAATCACTCCAAAGTTCATATCTA 57.616 33.333 0.00 0.00 36.35 1.98
153 154 7.884877 TGAACAATCACTCCAAAGTTCATATCT 59.115 33.333 0.00 0.00 40.01 1.98
154 155 8.044060 TGAACAATCACTCCAAAGTTCATATC 57.956 34.615 0.00 0.00 40.01 1.63
157 158 6.906157 ATGAACAATCACTCCAAAGTTCAT 57.094 33.333 11.52 11.52 45.91 2.57
158 159 6.506147 CAATGAACAATCACTCCAAAGTTCA 58.494 36.000 8.06 8.06 46.13 3.18
159 160 5.403466 GCAATGAACAATCACTCCAAAGTTC 59.597 40.000 0.00 0.00 38.69 3.01
160 161 5.163426 TGCAATGAACAATCACTCCAAAGTT 60.163 36.000 0.00 0.00 38.69 2.66
161 162 4.341806 TGCAATGAACAATCACTCCAAAGT 59.658 37.500 0.00 0.00 38.69 2.66
162 163 4.682860 GTGCAATGAACAATCACTCCAAAG 59.317 41.667 0.00 0.00 38.69 2.77
163 164 4.619973 GTGCAATGAACAATCACTCCAAA 58.380 39.130 0.00 0.00 38.69 3.28
164 165 3.304592 CGTGCAATGAACAATCACTCCAA 60.305 43.478 0.00 0.00 38.69 3.53
165 166 2.226200 CGTGCAATGAACAATCACTCCA 59.774 45.455 0.00 0.00 38.69 3.86
166 167 2.226437 ACGTGCAATGAACAATCACTCC 59.774 45.455 0.00 0.00 38.69 3.85
167 168 3.542712 ACGTGCAATGAACAATCACTC 57.457 42.857 0.00 0.00 38.69 3.51
168 169 3.314913 TCAACGTGCAATGAACAATCACT 59.685 39.130 0.00 0.00 38.69 3.41
169 170 3.626977 TCAACGTGCAATGAACAATCAC 58.373 40.909 0.00 0.00 38.69 3.06
170 171 3.304592 CCTCAACGTGCAATGAACAATCA 60.305 43.478 0.00 0.00 40.57 2.57
171 172 3.236816 CCTCAACGTGCAATGAACAATC 58.763 45.455 0.00 0.00 0.00 2.67
172 173 2.030007 CCCTCAACGTGCAATGAACAAT 60.030 45.455 0.00 0.00 0.00 2.71
173 174 1.336440 CCCTCAACGTGCAATGAACAA 59.664 47.619 0.00 0.00 0.00 2.83
174 175 0.950836 CCCTCAACGTGCAATGAACA 59.049 50.000 0.00 0.00 0.00 3.18
175 176 1.234821 TCCCTCAACGTGCAATGAAC 58.765 50.000 0.00 0.00 0.00 3.18
176 177 1.811965 CATCCCTCAACGTGCAATGAA 59.188 47.619 0.00 0.00 0.00 2.57
177 178 1.452110 CATCCCTCAACGTGCAATGA 58.548 50.000 0.00 0.00 0.00 2.57
178 179 0.452987 CCATCCCTCAACGTGCAATG 59.547 55.000 0.00 0.00 0.00 2.82
179 180 0.038166 ACCATCCCTCAACGTGCAAT 59.962 50.000 0.00 0.00 0.00 3.56
180 181 0.179004 AACCATCCCTCAACGTGCAA 60.179 50.000 0.00 0.00 0.00 4.08
181 182 0.687920 TAACCATCCCTCAACGTGCA 59.312 50.000 0.00 0.00 0.00 4.57
182 183 2.038387 ATAACCATCCCTCAACGTGC 57.962 50.000 0.00 0.00 0.00 5.34
183 184 4.956085 TCATATAACCATCCCTCAACGTG 58.044 43.478 0.00 0.00 0.00 4.49
184 185 5.280011 GGATCATATAACCATCCCTCAACGT 60.280 44.000 0.00 0.00 31.31 3.99
185 186 5.178797 GGATCATATAACCATCCCTCAACG 58.821 45.833 0.00 0.00 31.31 4.10
186 187 6.126863 TGGATCATATAACCATCCCTCAAC 57.873 41.667 0.00 0.00 36.03 3.18
187 188 6.778542 TTGGATCATATAACCATCCCTCAA 57.221 37.500 0.00 0.00 36.03 3.02
188 189 6.975471 ATTGGATCATATAACCATCCCTCA 57.025 37.500 0.00 0.00 36.03 3.86
202 203 9.017509 CCAACAGTGCTAATATAATTGGATCAT 57.982 33.333 0.00 0.00 38.05 2.45
203 204 7.448161 CCCAACAGTGCTAATATAATTGGATCA 59.552 37.037 5.24 0.00 38.05 2.92
204 205 7.665559 TCCCAACAGTGCTAATATAATTGGATC 59.334 37.037 5.24 0.00 38.05 3.36
205 206 7.526041 TCCCAACAGTGCTAATATAATTGGAT 58.474 34.615 5.24 0.00 38.05 3.41
206 207 6.905736 TCCCAACAGTGCTAATATAATTGGA 58.094 36.000 5.24 0.00 38.05 3.53
207 208 6.998074 TCTCCCAACAGTGCTAATATAATTGG 59.002 38.462 0.00 0.00 36.03 3.16
208 209 8.627208 ATCTCCCAACAGTGCTAATATAATTG 57.373 34.615 0.00 0.00 0.00 2.32
209 210 9.071276 CAATCTCCCAACAGTGCTAATATAATT 57.929 33.333 0.00 0.00 0.00 1.40
210 211 7.175641 GCAATCTCCCAACAGTGCTAATATAAT 59.824 37.037 0.00 0.00 0.00 1.28
211 212 6.486657 GCAATCTCCCAACAGTGCTAATATAA 59.513 38.462 0.00 0.00 0.00 0.98
212 213 5.997746 GCAATCTCCCAACAGTGCTAATATA 59.002 40.000 0.00 0.00 0.00 0.86
213 214 4.823989 GCAATCTCCCAACAGTGCTAATAT 59.176 41.667 0.00 0.00 0.00 1.28
214 215 4.199310 GCAATCTCCCAACAGTGCTAATA 58.801 43.478 0.00 0.00 0.00 0.98
215 216 3.019564 GCAATCTCCCAACAGTGCTAAT 58.980 45.455 0.00 0.00 0.00 1.73
216 217 2.224744 TGCAATCTCCCAACAGTGCTAA 60.225 45.455 0.00 0.00 33.19 3.09
217 218 1.350684 TGCAATCTCCCAACAGTGCTA 59.649 47.619 0.00 0.00 33.19 3.49
218 219 0.111061 TGCAATCTCCCAACAGTGCT 59.889 50.000 0.00 0.00 33.19 4.40
219 220 0.242017 GTGCAATCTCCCAACAGTGC 59.758 55.000 0.00 0.00 0.00 4.40
220 221 1.901591 AGTGCAATCTCCCAACAGTG 58.098 50.000 0.00 0.00 0.00 3.66
221 222 2.616510 GCTAGTGCAATCTCCCAACAGT 60.617 50.000 0.00 0.00 39.41 3.55
222 223 2.012673 GCTAGTGCAATCTCCCAACAG 58.987 52.381 0.00 0.00 39.41 3.16
223 224 1.675714 CGCTAGTGCAATCTCCCAACA 60.676 52.381 0.00 0.00 39.64 3.33
224 225 1.009829 CGCTAGTGCAATCTCCCAAC 58.990 55.000 0.00 0.00 39.64 3.77
225 226 0.901827 TCGCTAGTGCAATCTCCCAA 59.098 50.000 0.00 0.00 39.64 4.12
226 227 0.901827 TTCGCTAGTGCAATCTCCCA 59.098 50.000 0.00 0.00 39.64 4.37
227 228 1.936547 CTTTCGCTAGTGCAATCTCCC 59.063 52.381 0.00 0.00 39.64 4.30
228 229 2.622436 ACTTTCGCTAGTGCAATCTCC 58.378 47.619 0.00 0.00 39.64 3.71
229 230 4.318404 GCATACTTTCGCTAGTGCAATCTC 60.318 45.833 0.00 0.00 39.64 2.75
230 231 3.557595 GCATACTTTCGCTAGTGCAATCT 59.442 43.478 0.00 0.00 39.64 2.40
231 232 3.309682 TGCATACTTTCGCTAGTGCAATC 59.690 43.478 0.00 0.00 39.64 2.67
232 233 3.063997 GTGCATACTTTCGCTAGTGCAAT 59.936 43.478 0.00 0.00 39.64 3.56
233 234 2.415168 GTGCATACTTTCGCTAGTGCAA 59.585 45.455 0.00 0.00 39.64 4.08
234 235 1.999735 GTGCATACTTTCGCTAGTGCA 59.000 47.619 0.00 0.00 39.64 4.57
235 236 1.327764 GGTGCATACTTTCGCTAGTGC 59.672 52.381 0.00 0.00 0.00 4.40
236 237 1.933853 GGGTGCATACTTTCGCTAGTG 59.066 52.381 0.00 0.00 0.00 2.74
237 238 1.831736 AGGGTGCATACTTTCGCTAGT 59.168 47.619 0.00 0.00 0.00 2.57
238 239 2.604046 AGGGTGCATACTTTCGCTAG 57.396 50.000 0.00 0.00 0.00 3.42
239 240 2.364324 CCTAGGGTGCATACTTTCGCTA 59.636 50.000 0.00 0.00 0.00 4.26
240 241 1.139058 CCTAGGGTGCATACTTTCGCT 59.861 52.381 0.00 0.00 0.00 4.93
241 242 1.583054 CCTAGGGTGCATACTTTCGC 58.417 55.000 0.00 0.00 0.00 4.70
242 243 1.583054 GCCTAGGGTGCATACTTTCG 58.417 55.000 11.72 0.00 0.00 3.46
243 244 1.490910 AGGCCTAGGGTGCATACTTTC 59.509 52.381 1.29 0.00 0.00 2.62
244 245 1.490910 GAGGCCTAGGGTGCATACTTT 59.509 52.381 4.42 0.00 0.00 2.66
245 246 1.132500 GAGGCCTAGGGTGCATACTT 58.868 55.000 4.42 0.00 0.00 2.24
246 247 0.031111 TGAGGCCTAGGGTGCATACT 60.031 55.000 4.42 0.00 0.00 2.12
247 248 1.059913 ATGAGGCCTAGGGTGCATAC 58.940 55.000 4.42 0.00 0.00 2.39
248 249 1.819753 AATGAGGCCTAGGGTGCATA 58.180 50.000 4.42 0.00 0.00 3.14
249 250 0.929244 AAATGAGGCCTAGGGTGCAT 59.071 50.000 4.42 0.00 0.00 3.96
250 251 0.255890 GAAATGAGGCCTAGGGTGCA 59.744 55.000 4.42 0.00 0.00 4.57
251 252 0.466372 GGAAATGAGGCCTAGGGTGC 60.466 60.000 4.42 0.00 0.00 5.01
252 253 0.918983 TGGAAATGAGGCCTAGGGTG 59.081 55.000 4.42 0.00 0.00 4.61
253 254 1.566231 CTTGGAAATGAGGCCTAGGGT 59.434 52.381 4.42 0.00 0.00 4.34
254 255 1.752084 GCTTGGAAATGAGGCCTAGGG 60.752 57.143 4.42 0.00 0.00 3.53
255 256 1.064463 TGCTTGGAAATGAGGCCTAGG 60.064 52.381 4.42 3.67 0.00 3.02
256 257 2.425143 TGCTTGGAAATGAGGCCTAG 57.575 50.000 4.42 0.00 0.00 3.02
257 258 3.025978 CAATGCTTGGAAATGAGGCCTA 58.974 45.455 4.42 0.00 0.00 3.93
258 259 1.829222 CAATGCTTGGAAATGAGGCCT 59.171 47.619 3.86 3.86 0.00 5.19
259 260 1.741394 GCAATGCTTGGAAATGAGGCC 60.741 52.381 0.00 0.00 0.00 5.19
260 261 1.066716 TGCAATGCTTGGAAATGAGGC 60.067 47.619 6.82 0.00 0.00 4.70
261 262 3.322211 TTGCAATGCTTGGAAATGAGG 57.678 42.857 6.82 0.00 38.07 3.86
262 263 4.807304 GGTATTGCAATGCTTGGAAATGAG 59.193 41.667 24.03 0.00 44.19 2.90
263 264 4.677514 CGGTATTGCAATGCTTGGAAATGA 60.678 41.667 24.03 0.00 44.19 2.57
264 265 3.552699 CGGTATTGCAATGCTTGGAAATG 59.447 43.478 24.03 4.09 44.19 2.32
265 266 3.195396 ACGGTATTGCAATGCTTGGAAAT 59.805 39.130 24.03 0.00 44.19 2.17
266 267 2.560542 ACGGTATTGCAATGCTTGGAAA 59.439 40.909 24.03 0.00 44.19 3.13
267 268 2.166829 ACGGTATTGCAATGCTTGGAA 58.833 42.857 24.03 0.00 45.09 3.53
268 269 1.832883 ACGGTATTGCAATGCTTGGA 58.167 45.000 24.03 0.28 0.00 3.53
269 270 2.652941 AACGGTATTGCAATGCTTGG 57.347 45.000 24.03 16.49 0.00 3.61
270 271 3.121611 CACAAACGGTATTGCAATGCTTG 59.878 43.478 24.03 21.44 33.52 4.01
271 272 3.005261 TCACAAACGGTATTGCAATGCTT 59.995 39.130 24.03 11.08 33.52 3.91
272 273 2.556189 TCACAAACGGTATTGCAATGCT 59.444 40.909 24.03 5.54 33.52 3.79
273 274 2.940147 TCACAAACGGTATTGCAATGC 58.060 42.857 22.27 20.14 33.52 3.56
274 275 4.558470 GTGATCACAAACGGTATTGCAATG 59.442 41.667 22.27 7.93 33.52 2.82
275 276 4.458989 AGTGATCACAAACGGTATTGCAAT 59.541 37.500 27.02 17.56 33.52 3.56
276 277 3.818210 AGTGATCACAAACGGTATTGCAA 59.182 39.130 27.02 0.00 33.52 4.08
277 278 3.407698 AGTGATCACAAACGGTATTGCA 58.592 40.909 27.02 0.00 33.52 4.08
278 279 4.419522 AAGTGATCACAAACGGTATTGC 57.580 40.909 27.02 0.00 33.52 3.56
279 280 6.205784 ACAAAAGTGATCACAAACGGTATTG 58.794 36.000 27.02 18.62 36.37 1.90
280 281 6.385649 ACAAAAGTGATCACAAACGGTATT 57.614 33.333 27.02 7.69 0.00 1.89
281 282 6.385649 AACAAAAGTGATCACAAACGGTAT 57.614 33.333 27.02 1.19 0.00 2.73
282 283 5.821516 AACAAAAGTGATCACAAACGGTA 57.178 34.783 27.02 0.00 0.00 4.02
283 284 4.712122 AACAAAAGTGATCACAAACGGT 57.288 36.364 27.02 14.88 0.00 4.83
284 285 5.816919 AGTAACAAAAGTGATCACAAACGG 58.183 37.500 27.02 14.29 0.00 4.44
285 286 6.745450 ACAAGTAACAAAAGTGATCACAAACG 59.255 34.615 27.02 14.77 0.00 3.60
286 287 8.460831 AACAAGTAACAAAAGTGATCACAAAC 57.539 30.769 27.02 13.11 0.00 2.93
287 288 9.562583 GTAACAAGTAACAAAAGTGATCACAAA 57.437 29.630 27.02 2.09 0.00 2.83
288 289 8.185505 GGTAACAAGTAACAAAAGTGATCACAA 58.814 33.333 27.02 1.40 0.00 3.33
289 290 7.554835 AGGTAACAAGTAACAAAAGTGATCACA 59.445 33.333 27.02 1.97 41.41 3.58
290 291 7.927048 AGGTAACAAGTAACAAAAGTGATCAC 58.073 34.615 18.47 18.47 41.41 3.06
291 292 8.402472 CAAGGTAACAAGTAACAAAAGTGATCA 58.598 33.333 0.00 0.00 41.41 2.92
292 293 7.860872 CCAAGGTAACAAGTAACAAAAGTGATC 59.139 37.037 0.00 0.00 41.41 2.92
293 294 7.340999 ACCAAGGTAACAAGTAACAAAAGTGAT 59.659 33.333 0.00 0.00 41.41 3.06
294 295 6.660094 ACCAAGGTAACAAGTAACAAAAGTGA 59.340 34.615 0.00 0.00 41.41 3.41
295 296 6.859017 ACCAAGGTAACAAGTAACAAAAGTG 58.141 36.000 0.00 0.00 41.41 3.16
296 297 7.470935 AACCAAGGTAACAAGTAACAAAAGT 57.529 32.000 0.00 0.00 41.41 2.66
297 298 8.766000 AAAACCAAGGTAACAAGTAACAAAAG 57.234 30.769 0.00 0.00 41.41 2.27
322 323 9.887406 GGACGAAAAACATACATTTCTCTAAAA 57.113 29.630 0.00 0.00 34.22 1.52
323 324 8.508875 GGGACGAAAAACATACATTTCTCTAAA 58.491 33.333 0.00 0.00 34.22 1.85
333 334 4.710324 ACTTGAGGGACGAAAAACATACA 58.290 39.130 0.00 0.00 0.00 2.29
709 710 1.141881 CCGCGTAGATCTGTGCCTT 59.858 57.895 5.18 0.00 0.00 4.35
714 715 4.570663 GCCGCCGCGTAGATCTGT 62.571 66.667 12.58 0.00 0.00 3.41
739 740 1.295792 CAACCGCAACACACTACACT 58.704 50.000 0.00 0.00 0.00 3.55
784 787 1.328069 CTGATAGTTCTCGTCGTCGCT 59.672 52.381 0.00 0.00 36.96 4.93
1033 2451 7.992754 AAGAAAGCTTATCTCTGTCAATGTT 57.007 32.000 0.00 0.00 31.07 2.71
1086 2504 1.100510 CCTCCACATCAGTGCAATGG 58.899 55.000 15.06 1.22 44.53 3.16
1138 2556 7.173722 ACAAGTCCATCATTCATCTCTTTTCT 58.826 34.615 0.00 0.00 0.00 2.52
1170 2588 6.992123 TCTTAAGAACAGTGTTGTCATCATGT 59.008 34.615 14.57 0.00 36.23 3.21
1208 2626 2.189594 TGCAACTCCTCCATCACAAG 57.810 50.000 0.00 0.00 0.00 3.16
1306 2802 4.606210 ACACTTAAAGGGGTGAACTGTTT 58.394 39.130 0.00 0.00 37.22 2.83
1352 2848 6.043590 TGCATCAGTATTCCCATCTAATCTGT 59.956 38.462 0.00 0.00 0.00 3.41
1392 2888 4.862902 ATAATCACTGTCCTCCTCATCG 57.137 45.455 0.00 0.00 0.00 3.84
1398 2894 7.397476 TCATCAGGTATATAATCACTGTCCTCC 59.603 40.741 0.00 0.00 0.00 4.30
1495 2991 0.178967 TCAATGTTGCCAGCCCTGAA 60.179 50.000 0.00 0.00 0.00 3.02
1675 3171 5.871396 ACTTCTCCTCTGTCTTTGTACAA 57.129 39.130 3.59 3.59 0.00 2.41
2074 3570 6.183360 TGCTTCACAATTTGTTTTGCTCTCTA 60.183 34.615 0.00 0.00 0.00 2.43
2177 3673 4.519540 AGTTTGACAACAACAGTGCTTT 57.480 36.364 0.00 0.00 35.63 3.51
2685 4201 4.134563 GTTTCTGCCAGTCCTTGTTTCTA 58.865 43.478 0.00 0.00 0.00 2.10
2874 4390 7.959651 CACTTATTAAAGCTCTCACACATGTTC 59.040 37.037 0.00 0.00 36.05 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.