Multiple sequence alignment - TraesCS7D01G285900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G285900 chr7D 100.000 2273 0 0 1 2273 307050679 307048407 0.000000e+00 4198
1 TraesCS7D01G285900 chr2B 98.404 2005 26 3 271 2273 449208969 449210969 0.000000e+00 3520
2 TraesCS7D01G285900 chr2B 98.104 2004 33 2 271 2273 234530801 234532800 0.000000e+00 3485
3 TraesCS7D01G285900 chr3A 98.353 2004 28 2 271 2273 495092181 495094180 0.000000e+00 3513
4 TraesCS7D01G285900 chr3B 98.155 2005 31 3 271 2273 6000407 6002407 0.000000e+00 3493
5 TraesCS7D01G285900 chr7A 98.104 2004 33 2 271 2273 60220406 60222405 0.000000e+00 3485
6 TraesCS7D01G285900 chr7A 98.846 260 3 0 1 260 4916795 4917054 4.420000e-127 464
7 TraesCS7D01G285900 chr7A 98.462 260 4 0 1 260 60108016 60107757 2.060000e-125 459
8 TraesCS7D01G285900 chr4B 97.854 2004 38 2 271 2273 495577888 495579887 0.000000e+00 3458
9 TraesCS7D01G285900 chr6D 97.805 2005 39 3 271 2273 458917996 458919997 0.000000e+00 3454
10 TraesCS7D01G285900 chr1B 97.804 2004 39 2 271 2273 619184972 619186971 0.000000e+00 3452
11 TraesCS7D01G285900 chr3D 97.454 2003 46 4 274 2273 48694513 48692513 0.000000e+00 3411
12 TraesCS7D01G285900 chr3D 98.846 260 3 0 1 260 523758596 523758855 4.420000e-127 464
13 TraesCS7D01G285900 chr6A 98.846 260 3 0 1 260 608885995 608886254 4.420000e-127 464
14 TraesCS7D01G285900 chr5D 98.846 260 3 0 1 260 305184616 305184875 4.420000e-127 464
15 TraesCS7D01G285900 chr2D 98.846 260 3 0 1 260 637322149 637321890 4.420000e-127 464
16 TraesCS7D01G285900 chr2D 98.462 260 4 0 1 260 189853943 189854202 2.060000e-125 459
17 TraesCS7D01G285900 chr2D 98.462 260 4 0 1 260 635051476 635051735 2.060000e-125 459
18 TraesCS7D01G285900 chr6B 98.462 260 4 0 1 260 388176908 388176649 2.060000e-125 459


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G285900 chr7D 307048407 307050679 2272 True 4198 4198 100.000 1 2273 1 chr7D.!!$R1 2272
1 TraesCS7D01G285900 chr2B 449208969 449210969 2000 False 3520 3520 98.404 271 2273 1 chr2B.!!$F2 2002
2 TraesCS7D01G285900 chr2B 234530801 234532800 1999 False 3485 3485 98.104 271 2273 1 chr2B.!!$F1 2002
3 TraesCS7D01G285900 chr3A 495092181 495094180 1999 False 3513 3513 98.353 271 2273 1 chr3A.!!$F1 2002
4 TraesCS7D01G285900 chr3B 6000407 6002407 2000 False 3493 3493 98.155 271 2273 1 chr3B.!!$F1 2002
5 TraesCS7D01G285900 chr7A 60220406 60222405 1999 False 3485 3485 98.104 271 2273 1 chr7A.!!$F2 2002
6 TraesCS7D01G285900 chr4B 495577888 495579887 1999 False 3458 3458 97.854 271 2273 1 chr4B.!!$F1 2002
7 TraesCS7D01G285900 chr6D 458917996 458919997 2001 False 3454 3454 97.805 271 2273 1 chr6D.!!$F1 2002
8 TraesCS7D01G285900 chr1B 619184972 619186971 1999 False 3452 3452 97.804 271 2273 1 chr1B.!!$F1 2002
9 TraesCS7D01G285900 chr3D 48692513 48694513 2000 True 3411 3411 97.454 274 2273 1 chr3D.!!$R1 1999

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 193 0.179009 TAGCATGGGCAGGCAATCTC 60.179 55.0 0.0 0.0 44.61 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 2130 6.349777 CCTCTTTAGCCCTATGTCTCTTATCG 60.35 46.154 0.0 0.0 0.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.272822 GTGGCATTAGTTCCTTTTCATTCT 57.727 37.500 0.00 0.00 0.00 2.40
24 25 6.325596 GTGGCATTAGTTCCTTTTCATTCTC 58.674 40.000 0.00 0.00 0.00 2.87
25 26 6.151817 GTGGCATTAGTTCCTTTTCATTCTCT 59.848 38.462 0.00 0.00 0.00 3.10
26 27 7.336931 GTGGCATTAGTTCCTTTTCATTCTCTA 59.663 37.037 0.00 0.00 0.00 2.43
27 28 7.554118 TGGCATTAGTTCCTTTTCATTCTCTAG 59.446 37.037 0.00 0.00 0.00 2.43
28 29 7.770897 GGCATTAGTTCCTTTTCATTCTCTAGA 59.229 37.037 0.00 0.00 0.00 2.43
29 30 9.336171 GCATTAGTTCCTTTTCATTCTCTAGAT 57.664 33.333 0.00 0.00 0.00 1.98
35 36 9.487790 GTTCCTTTTCATTCTCTAGATAGATGG 57.512 37.037 0.00 0.00 0.00 3.51
36 37 8.200024 TCCTTTTCATTCTCTAGATAGATGGG 57.800 38.462 0.00 0.00 0.00 4.00
37 38 6.878389 CCTTTTCATTCTCTAGATAGATGGGC 59.122 42.308 0.00 0.00 0.00 5.36
38 39 7.379059 TTTTCATTCTCTAGATAGATGGGCA 57.621 36.000 0.00 0.00 0.00 5.36
39 40 6.602410 TTCATTCTCTAGATAGATGGGCAG 57.398 41.667 0.00 0.00 0.00 4.85
40 41 5.896963 TCATTCTCTAGATAGATGGGCAGA 58.103 41.667 0.00 0.00 0.00 4.26
41 42 6.318112 TCATTCTCTAGATAGATGGGCAGAA 58.682 40.000 0.00 0.00 0.00 3.02
42 43 6.210385 TCATTCTCTAGATAGATGGGCAGAAC 59.790 42.308 0.00 0.00 0.00 3.01
43 44 5.066913 TCTCTAGATAGATGGGCAGAACA 57.933 43.478 0.00 0.00 0.00 3.18
44 45 5.458595 TCTCTAGATAGATGGGCAGAACAA 58.541 41.667 0.00 0.00 0.00 2.83
45 46 5.538053 TCTCTAGATAGATGGGCAGAACAAG 59.462 44.000 0.00 0.00 0.00 3.16
46 47 3.205784 AGATAGATGGGCAGAACAAGC 57.794 47.619 0.00 0.00 0.00 4.01
47 48 2.776536 AGATAGATGGGCAGAACAAGCT 59.223 45.455 0.00 0.00 0.00 3.74
48 49 3.201708 AGATAGATGGGCAGAACAAGCTT 59.798 43.478 0.00 0.00 0.00 3.74
49 50 1.831580 AGATGGGCAGAACAAGCTTC 58.168 50.000 0.00 0.00 0.00 3.86
50 51 1.353694 AGATGGGCAGAACAAGCTTCT 59.646 47.619 0.00 0.00 0.00 2.85
51 52 1.742268 GATGGGCAGAACAAGCTTCTC 59.258 52.381 0.00 0.00 0.00 2.87
52 53 0.767375 TGGGCAGAACAAGCTTCTCT 59.233 50.000 0.00 0.00 0.00 3.10
53 54 1.143684 TGGGCAGAACAAGCTTCTCTT 59.856 47.619 0.00 0.00 34.78 2.85
54 55 2.234143 GGGCAGAACAAGCTTCTCTTT 58.766 47.619 0.00 0.00 31.27 2.52
55 56 3.181445 TGGGCAGAACAAGCTTCTCTTTA 60.181 43.478 0.00 0.00 31.27 1.85
56 57 4.013050 GGGCAGAACAAGCTTCTCTTTAT 58.987 43.478 0.00 0.00 31.27 1.40
57 58 5.186198 GGGCAGAACAAGCTTCTCTTTATA 58.814 41.667 0.00 0.00 31.27 0.98
58 59 5.825151 GGGCAGAACAAGCTTCTCTTTATAT 59.175 40.000 0.00 0.00 31.27 0.86
59 60 6.319911 GGGCAGAACAAGCTTCTCTTTATATT 59.680 38.462 0.00 0.00 31.27 1.28
60 61 7.413644 GGCAGAACAAGCTTCTCTTTATATTC 58.586 38.462 0.00 0.00 31.27 1.75
61 62 7.281999 GGCAGAACAAGCTTCTCTTTATATTCT 59.718 37.037 0.00 0.00 31.27 2.40
62 63 9.319143 GCAGAACAAGCTTCTCTTTATATTCTA 57.681 33.333 0.00 0.00 31.27 2.10
89 90 8.609617 TCTAGAAAGGGTCAATTAGATTCTCA 57.390 34.615 0.00 0.00 0.00 3.27
90 91 9.218525 TCTAGAAAGGGTCAATTAGATTCTCAT 57.781 33.333 0.00 0.00 0.00 2.90
91 92 9.487790 CTAGAAAGGGTCAATTAGATTCTCATC 57.512 37.037 0.00 0.00 0.00 2.92
92 93 8.100135 AGAAAGGGTCAATTAGATTCTCATCT 57.900 34.615 0.00 0.00 42.83 2.90
93 94 8.210265 AGAAAGGGTCAATTAGATTCTCATCTC 58.790 37.037 0.00 0.00 40.53 2.75
94 95 6.432403 AGGGTCAATTAGATTCTCATCTCC 57.568 41.667 0.00 0.00 40.53 3.71
95 96 6.149616 AGGGTCAATTAGATTCTCATCTCCT 58.850 40.000 0.00 0.00 40.53 3.69
96 97 7.309091 AGGGTCAATTAGATTCTCATCTCCTA 58.691 38.462 0.00 0.00 40.53 2.94
97 98 7.960861 AGGGTCAATTAGATTCTCATCTCCTAT 59.039 37.037 0.00 0.00 40.53 2.57
98 99 8.601546 GGGTCAATTAGATTCTCATCTCCTATT 58.398 37.037 0.00 0.00 40.53 1.73
106 107 8.961294 AGATTCTCATCTCCTATTTGTTTGAG 57.039 34.615 0.00 0.00 34.26 3.02
107 108 6.992063 TTCTCATCTCCTATTTGTTTGAGC 57.008 37.500 0.00 0.00 31.46 4.26
108 109 5.431765 TCTCATCTCCTATTTGTTTGAGCC 58.568 41.667 0.00 0.00 31.46 4.70
109 110 5.045651 TCTCATCTCCTATTTGTTTGAGCCA 60.046 40.000 0.00 0.00 31.46 4.75
110 111 5.759059 TCATCTCCTATTTGTTTGAGCCAT 58.241 37.500 0.00 0.00 0.00 4.40
111 112 6.189859 TCATCTCCTATTTGTTTGAGCCATT 58.810 36.000 0.00 0.00 0.00 3.16
112 113 6.319658 TCATCTCCTATTTGTTTGAGCCATTC 59.680 38.462 0.00 0.00 0.00 2.67
113 114 5.569355 TCTCCTATTTGTTTGAGCCATTCA 58.431 37.500 0.00 0.00 0.00 2.57
114 115 6.189859 TCTCCTATTTGTTTGAGCCATTCAT 58.810 36.000 0.00 0.00 35.27 2.57
115 116 6.664816 TCTCCTATTTGTTTGAGCCATTCATT 59.335 34.615 0.00 0.00 35.27 2.57
116 117 7.833682 TCTCCTATTTGTTTGAGCCATTCATTA 59.166 33.333 0.00 0.00 35.27 1.90
117 118 8.537728 TCCTATTTGTTTGAGCCATTCATTAT 57.462 30.769 0.00 0.00 35.27 1.28
118 119 9.639563 TCCTATTTGTTTGAGCCATTCATTATA 57.360 29.630 0.00 0.00 35.27 0.98
119 120 9.903682 CCTATTTGTTTGAGCCATTCATTATAG 57.096 33.333 0.00 0.00 35.27 1.31
122 123 6.698008 TGTTTGAGCCATTCATTATAGTGG 57.302 37.500 0.00 0.00 35.27 4.00
123 124 6.186957 TGTTTGAGCCATTCATTATAGTGGT 58.813 36.000 0.00 0.00 35.27 4.16
124 125 6.095300 TGTTTGAGCCATTCATTATAGTGGTG 59.905 38.462 0.00 0.00 35.27 4.17
125 126 4.717877 TGAGCCATTCATTATAGTGGTGG 58.282 43.478 12.91 12.91 34.23 4.61
126 127 4.165950 TGAGCCATTCATTATAGTGGTGGT 59.834 41.667 16.28 8.00 34.23 4.16
127 128 4.464008 AGCCATTCATTATAGTGGTGGTG 58.536 43.478 16.28 4.06 34.23 4.17
128 129 3.004734 GCCATTCATTATAGTGGTGGTGC 59.995 47.826 16.28 5.43 34.23 5.01
129 130 3.569701 CCATTCATTATAGTGGTGGTGCC 59.430 47.826 10.43 0.00 37.90 5.01
130 131 2.613026 TCATTATAGTGGTGGTGCCG 57.387 50.000 0.00 0.00 41.21 5.69
131 132 1.140052 TCATTATAGTGGTGGTGCCGG 59.860 52.381 0.00 0.00 41.21 6.13
132 133 0.472471 ATTATAGTGGTGGTGCCGGG 59.528 55.000 2.18 0.00 41.21 5.73
133 134 0.618107 TTATAGTGGTGGTGCCGGGA 60.618 55.000 2.18 0.00 41.21 5.14
134 135 0.618107 TATAGTGGTGGTGCCGGGAA 60.618 55.000 2.18 0.00 41.21 3.97
135 136 1.910580 ATAGTGGTGGTGCCGGGAAG 61.911 60.000 2.18 0.00 41.21 3.46
145 146 2.514824 CCGGGAAGGCAGCTTAGC 60.515 66.667 0.00 0.00 0.00 3.09
146 147 2.268920 CGGGAAGGCAGCTTAGCA 59.731 61.111 7.07 0.00 35.83 3.49
147 148 2.109126 CGGGAAGGCAGCTTAGCAC 61.109 63.158 7.07 0.00 35.83 4.40
148 149 1.301293 GGGAAGGCAGCTTAGCACT 59.699 57.895 7.07 0.00 35.83 4.40
149 150 0.746204 GGGAAGGCAGCTTAGCACTC 60.746 60.000 7.07 0.00 35.83 3.51
150 151 0.251634 GGAAGGCAGCTTAGCACTCT 59.748 55.000 7.07 0.00 35.83 3.24
151 152 1.482593 GGAAGGCAGCTTAGCACTCTA 59.517 52.381 7.07 0.00 35.83 2.43
152 153 2.482839 GGAAGGCAGCTTAGCACTCTAG 60.483 54.545 7.07 0.00 35.83 2.43
153 154 1.859302 AGGCAGCTTAGCACTCTAGT 58.141 50.000 7.07 0.00 35.83 2.57
154 155 1.754226 AGGCAGCTTAGCACTCTAGTC 59.246 52.381 7.07 0.00 35.83 2.59
155 156 1.202475 GGCAGCTTAGCACTCTAGTCC 60.202 57.143 7.07 0.00 35.83 3.85
156 157 1.754226 GCAGCTTAGCACTCTAGTCCT 59.246 52.381 7.07 0.00 0.00 3.85
157 158 2.167487 GCAGCTTAGCACTCTAGTCCTT 59.833 50.000 7.07 0.00 0.00 3.36
158 159 3.368948 GCAGCTTAGCACTCTAGTCCTTT 60.369 47.826 7.07 0.00 0.00 3.11
159 160 4.826556 CAGCTTAGCACTCTAGTCCTTTT 58.173 43.478 7.07 0.00 0.00 2.27
160 161 4.629200 CAGCTTAGCACTCTAGTCCTTTTG 59.371 45.833 7.07 0.00 0.00 2.44
161 162 4.528596 AGCTTAGCACTCTAGTCCTTTTGA 59.471 41.667 7.07 0.00 0.00 2.69
162 163 4.867608 GCTTAGCACTCTAGTCCTTTTGAG 59.132 45.833 0.00 0.00 0.00 3.02
163 164 5.567823 GCTTAGCACTCTAGTCCTTTTGAGT 60.568 44.000 0.00 0.00 39.98 3.41
164 165 6.350277 GCTTAGCACTCTAGTCCTTTTGAGTA 60.350 42.308 0.00 0.00 37.64 2.59
165 166 7.534723 TTAGCACTCTAGTCCTTTTGAGTAA 57.465 36.000 0.00 0.00 37.64 2.24
166 167 6.031751 AGCACTCTAGTCCTTTTGAGTAAG 57.968 41.667 0.00 0.00 37.64 2.34
167 168 5.046950 AGCACTCTAGTCCTTTTGAGTAAGG 60.047 44.000 0.00 0.00 45.01 2.69
177 178 6.817765 CCTTTTGAGTAAGGAATTGTAGCA 57.182 37.500 0.00 0.00 46.28 3.49
178 179 7.396540 CCTTTTGAGTAAGGAATTGTAGCAT 57.603 36.000 0.00 0.00 46.28 3.79
179 180 7.253422 CCTTTTGAGTAAGGAATTGTAGCATG 58.747 38.462 0.00 0.00 46.28 4.06
180 181 6.757897 TTTGAGTAAGGAATTGTAGCATGG 57.242 37.500 0.00 0.00 0.00 3.66
181 182 4.780815 TGAGTAAGGAATTGTAGCATGGG 58.219 43.478 0.00 0.00 0.00 4.00
182 183 3.555966 AGTAAGGAATTGTAGCATGGGC 58.444 45.455 0.00 0.00 41.61 5.36
183 184 2.530460 AAGGAATTGTAGCATGGGCA 57.470 45.000 0.00 0.00 44.61 5.36
184 185 2.062971 AGGAATTGTAGCATGGGCAG 57.937 50.000 0.00 0.00 44.61 4.85
185 186 1.035139 GGAATTGTAGCATGGGCAGG 58.965 55.000 0.00 0.00 44.61 4.85
186 187 0.386838 GAATTGTAGCATGGGCAGGC 59.613 55.000 0.00 0.00 44.61 4.85
187 188 0.324552 AATTGTAGCATGGGCAGGCA 60.325 50.000 0.00 0.00 44.61 4.75
188 189 0.324552 ATTGTAGCATGGGCAGGCAA 60.325 50.000 0.00 0.00 44.61 4.52
189 190 0.324552 TTGTAGCATGGGCAGGCAAT 60.325 50.000 0.00 0.00 44.61 3.56
190 191 0.752743 TGTAGCATGGGCAGGCAATC 60.753 55.000 0.00 0.00 44.61 2.67
191 192 0.466922 GTAGCATGGGCAGGCAATCT 60.467 55.000 0.00 0.00 44.61 2.40
192 193 0.179009 TAGCATGGGCAGGCAATCTC 60.179 55.000 0.00 0.00 44.61 2.75
193 194 1.455217 GCATGGGCAGGCAATCTCT 60.455 57.895 0.00 0.00 40.72 3.10
194 195 1.041447 GCATGGGCAGGCAATCTCTT 61.041 55.000 0.00 0.00 40.72 2.85
195 196 1.030457 CATGGGCAGGCAATCTCTTC 58.970 55.000 0.00 0.00 0.00 2.87
196 197 0.465097 ATGGGCAGGCAATCTCTTCG 60.465 55.000 0.00 0.00 0.00 3.79
197 198 1.221840 GGGCAGGCAATCTCTTCGA 59.778 57.895 0.00 0.00 0.00 3.71
198 199 0.179034 GGGCAGGCAATCTCTTCGAT 60.179 55.000 0.00 0.00 0.00 3.59
199 200 1.673168 GGCAGGCAATCTCTTCGATT 58.327 50.000 0.00 0.00 43.03 3.34
209 210 4.615588 ATCTCTTCGATTGATTCCCCTC 57.384 45.455 0.00 0.00 0.00 4.30
210 211 2.700897 TCTCTTCGATTGATTCCCCTCC 59.299 50.000 0.00 0.00 0.00 4.30
211 212 2.435805 CTCTTCGATTGATTCCCCTCCA 59.564 50.000 0.00 0.00 0.00 3.86
212 213 2.435805 TCTTCGATTGATTCCCCTCCAG 59.564 50.000 0.00 0.00 0.00 3.86
213 214 1.131638 TCGATTGATTCCCCTCCAGG 58.868 55.000 0.00 0.00 0.00 4.45
214 215 1.131638 CGATTGATTCCCCTCCAGGA 58.868 55.000 0.00 0.00 38.24 3.86
223 224 3.214694 TCCCCTCCAGGAATTACTTGA 57.785 47.619 0.00 0.00 38.24 3.02
224 225 3.537337 TCCCCTCCAGGAATTACTTGAA 58.463 45.455 0.00 0.00 38.24 2.69
225 226 4.119155 TCCCCTCCAGGAATTACTTGAAT 58.881 43.478 0.00 0.00 38.24 2.57
226 227 4.544152 TCCCCTCCAGGAATTACTTGAATT 59.456 41.667 0.00 0.00 40.62 2.17
227 228 5.734140 TCCCCTCCAGGAATTACTTGAATTA 59.266 40.000 0.00 0.00 37.90 1.40
228 229 6.218730 TCCCCTCCAGGAATTACTTGAATTAA 59.781 38.462 0.00 0.00 37.90 1.40
229 230 7.069344 CCCCTCCAGGAATTACTTGAATTAAT 58.931 38.462 0.00 0.00 37.90 1.40
230 231 7.565029 CCCCTCCAGGAATTACTTGAATTAATT 59.435 37.037 0.00 0.00 37.90 1.40
231 232 9.640952 CCCTCCAGGAATTACTTGAATTAATTA 57.359 33.333 0.00 0.00 37.90 1.40
234 235 9.920946 TCCAGGAATTACTTGAATTAATTAGCT 57.079 29.630 0.00 0.00 37.90 3.32
235 236 9.956720 CCAGGAATTACTTGAATTAATTAGCTG 57.043 33.333 0.00 0.00 37.90 4.24
236 237 9.956720 CAGGAATTACTTGAATTAATTAGCTGG 57.043 33.333 0.00 0.00 37.90 4.85
237 238 8.633561 AGGAATTACTTGAATTAATTAGCTGGC 58.366 33.333 0.00 0.00 37.90 4.85
238 239 7.867909 GGAATTACTTGAATTAATTAGCTGGCC 59.132 37.037 0.00 0.00 37.90 5.36
239 240 6.709018 TTACTTGAATTAATTAGCTGGCCC 57.291 37.500 0.00 0.00 0.00 5.80
240 241 4.609301 ACTTGAATTAATTAGCTGGCCCA 58.391 39.130 0.00 0.00 0.00 5.36
241 242 4.402474 ACTTGAATTAATTAGCTGGCCCAC 59.598 41.667 0.00 0.00 0.00 4.61
242 243 2.948979 TGAATTAATTAGCTGGCCCACG 59.051 45.455 0.00 0.00 0.00 4.94
243 244 1.981256 ATTAATTAGCTGGCCCACGG 58.019 50.000 0.00 0.00 0.00 4.94
244 245 0.913205 TTAATTAGCTGGCCCACGGA 59.087 50.000 0.00 0.00 0.00 4.69
245 246 0.468226 TAATTAGCTGGCCCACGGAG 59.532 55.000 0.00 0.00 0.00 4.63
264 265 6.338937 ACGGAGTGAAATATCAAACTAGTCC 58.661 40.000 0.00 0.00 42.51 3.85
265 266 5.753921 CGGAGTGAAATATCAAACTAGTCCC 59.246 44.000 0.00 0.00 37.30 4.46
266 267 5.753921 GGAGTGAAATATCAAACTAGTCCCG 59.246 44.000 0.00 0.00 37.30 5.14
267 268 6.295719 AGTGAAATATCAAACTAGTCCCGT 57.704 37.500 0.00 0.00 37.30 5.28
268 269 6.708285 AGTGAAATATCAAACTAGTCCCGTT 58.292 36.000 0.00 0.00 37.30 4.44
269 270 7.844009 AGTGAAATATCAAACTAGTCCCGTTA 58.156 34.615 0.00 0.00 37.30 3.18
272 273 8.701895 TGAAATATCAAACTAGTCCCGTTATCT 58.298 33.333 0.00 0.00 30.99 1.98
356 357 3.966543 CCCCCGGAAGCTGTGGTT 61.967 66.667 0.73 0.00 0.00 3.67
367 368 1.974236 AGCTGTGGTTAGTCAAGAGCT 59.026 47.619 0.00 0.00 32.84 4.09
377 378 0.723981 GTCAAGAGCTGCATCCGAAC 59.276 55.000 1.02 0.00 0.00 3.95
481 482 7.928706 TCTTTGAGAGGAAAGTTCTCTACAAAG 59.071 37.037 21.83 21.83 44.42 2.77
780 781 3.131396 GGATGTATTCCGACGAAATGCT 58.869 45.455 0.00 0.00 33.93 3.79
816 817 2.977914 TCGGCAAGAGAAAGATGGAAG 58.022 47.619 0.00 0.00 0.00 3.46
817 818 2.303022 TCGGCAAGAGAAAGATGGAAGT 59.697 45.455 0.00 0.00 0.00 3.01
818 819 2.675348 CGGCAAGAGAAAGATGGAAGTC 59.325 50.000 0.00 0.00 0.00 3.01
819 820 3.013219 GGCAAGAGAAAGATGGAAGTCC 58.987 50.000 0.00 0.00 0.00 3.85
845 850 8.713708 TTTGGTATAAGGAAGGAAATCAAACA 57.286 30.769 0.00 0.00 0.00 2.83
1337 1347 8.202137 TCTCCTTTCGTTCTCTTCTTTCTTTTA 58.798 33.333 0.00 0.00 0.00 1.52
1611 1621 0.758734 CCATAGGCTCGAATGACCCA 59.241 55.000 0.00 0.00 0.00 4.51
1981 1991 7.591006 TTCGTCCAGTCATTAATAACTTGAC 57.409 36.000 11.39 11.39 40.00 3.18
2145 2155 6.349777 CGATAAGAGACATAGGGCTAAAGAGG 60.350 46.154 0.00 0.00 0.00 3.69
2188 2198 6.631016 TCGTGTATAATCCTGCATAATCTCC 58.369 40.000 0.00 0.00 0.00 3.71
2203 2213 7.994911 TGCATAATCTCCAATGTTATCAGTTCT 59.005 33.333 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.151817 AGAGAATGAAAAGGAACTAATGCCAC 59.848 38.462 0.00 0.00 38.49 5.01
1 2 6.248433 AGAGAATGAAAAGGAACTAATGCCA 58.752 36.000 0.00 0.00 38.49 4.92
2 3 6.765915 AGAGAATGAAAAGGAACTAATGCC 57.234 37.500 0.00 0.00 38.49 4.40
3 4 8.723942 TCTAGAGAATGAAAAGGAACTAATGC 57.276 34.615 0.00 0.00 38.49 3.56
9 10 9.487790 CCATCTATCTAGAGAATGAAAAGGAAC 57.512 37.037 11.44 0.00 35.50 3.62
10 11 8.654997 CCCATCTATCTAGAGAATGAAAAGGAA 58.345 37.037 11.44 0.00 35.50 3.36
11 12 7.256475 GCCCATCTATCTAGAGAATGAAAAGGA 60.256 40.741 11.44 0.00 35.50 3.36
12 13 6.878389 GCCCATCTATCTAGAGAATGAAAAGG 59.122 42.308 11.44 6.80 35.50 3.11
13 14 7.448420 TGCCCATCTATCTAGAGAATGAAAAG 58.552 38.462 11.44 2.34 35.50 2.27
14 15 7.290948 TCTGCCCATCTATCTAGAGAATGAAAA 59.709 37.037 11.44 0.01 35.50 2.29
15 16 6.784473 TCTGCCCATCTATCTAGAGAATGAAA 59.216 38.462 11.44 0.26 35.50 2.69
16 17 6.318112 TCTGCCCATCTATCTAGAGAATGAA 58.682 40.000 11.44 0.51 35.50 2.57
17 18 5.896963 TCTGCCCATCTATCTAGAGAATGA 58.103 41.667 11.44 0.00 35.50 2.57
18 19 6.014755 TGTTCTGCCCATCTATCTAGAGAATG 60.015 42.308 0.00 1.99 35.50 2.67
19 20 6.080682 TGTTCTGCCCATCTATCTAGAGAAT 58.919 40.000 0.00 0.00 35.50 2.40
20 21 5.458595 TGTTCTGCCCATCTATCTAGAGAA 58.541 41.667 0.00 0.00 35.50 2.87
21 22 5.066913 TGTTCTGCCCATCTATCTAGAGA 57.933 43.478 0.00 0.00 35.50 3.10
22 23 5.782047 CTTGTTCTGCCCATCTATCTAGAG 58.218 45.833 0.00 0.00 35.50 2.43
23 24 4.039730 GCTTGTTCTGCCCATCTATCTAGA 59.960 45.833 0.00 0.00 36.65 2.43
24 25 4.040217 AGCTTGTTCTGCCCATCTATCTAG 59.960 45.833 0.00 0.00 0.00 2.43
25 26 3.969976 AGCTTGTTCTGCCCATCTATCTA 59.030 43.478 0.00 0.00 0.00 1.98
26 27 2.776536 AGCTTGTTCTGCCCATCTATCT 59.223 45.455 0.00 0.00 0.00 1.98
27 28 3.205784 AGCTTGTTCTGCCCATCTATC 57.794 47.619 0.00 0.00 0.00 2.08
28 29 3.201708 AGAAGCTTGTTCTGCCCATCTAT 59.798 43.478 2.10 0.00 0.00 1.98
29 30 2.573462 AGAAGCTTGTTCTGCCCATCTA 59.427 45.455 2.10 0.00 0.00 1.98
30 31 1.353694 AGAAGCTTGTTCTGCCCATCT 59.646 47.619 2.10 0.00 0.00 2.90
31 32 1.742268 GAGAAGCTTGTTCTGCCCATC 59.258 52.381 2.10 0.00 0.00 3.51
32 33 1.353694 AGAGAAGCTTGTTCTGCCCAT 59.646 47.619 2.10 0.00 0.00 4.00
33 34 0.767375 AGAGAAGCTTGTTCTGCCCA 59.233 50.000 2.10 0.00 0.00 5.36
34 35 1.902938 AAGAGAAGCTTGTTCTGCCC 58.097 50.000 2.10 0.00 34.93 5.36
35 36 6.934048 ATATAAAGAGAAGCTTGTTCTGCC 57.066 37.500 2.10 0.00 36.80 4.85
36 37 8.207521 AGAATATAAAGAGAAGCTTGTTCTGC 57.792 34.615 2.10 0.00 36.80 4.26
63 64 9.046846 TGAGAATCTAATTGACCCTTTCTAGAA 57.953 33.333 0.00 0.00 34.92 2.10
64 65 8.609617 TGAGAATCTAATTGACCCTTTCTAGA 57.390 34.615 0.00 0.00 34.92 2.43
65 66 9.487790 GATGAGAATCTAATTGACCCTTTCTAG 57.512 37.037 0.00 0.00 34.92 2.43
66 67 9.218525 AGATGAGAATCTAATTGACCCTTTCTA 57.781 33.333 0.00 0.00 34.92 2.10
67 68 8.100135 AGATGAGAATCTAATTGACCCTTTCT 57.900 34.615 0.00 0.00 34.92 2.52
68 69 7.443879 GGAGATGAGAATCTAATTGACCCTTTC 59.556 40.741 0.00 0.00 34.92 2.62
69 70 7.128573 AGGAGATGAGAATCTAATTGACCCTTT 59.871 37.037 0.00 0.00 34.92 3.11
70 71 6.619023 AGGAGATGAGAATCTAATTGACCCTT 59.381 38.462 0.00 0.00 34.92 3.95
71 72 6.149616 AGGAGATGAGAATCTAATTGACCCT 58.850 40.000 0.00 0.00 34.92 4.34
72 73 6.432403 AGGAGATGAGAATCTAATTGACCC 57.568 41.667 0.00 0.00 34.92 4.46
81 82 7.498570 GCTCAAACAAATAGGAGATGAGAATCT 59.501 37.037 4.20 0.00 35.91 2.40
82 83 7.255070 GGCTCAAACAAATAGGAGATGAGAATC 60.255 40.741 4.20 0.00 35.91 2.52
83 84 6.545298 GGCTCAAACAAATAGGAGATGAGAAT 59.455 38.462 4.20 0.00 35.91 2.40
84 85 5.882557 GGCTCAAACAAATAGGAGATGAGAA 59.117 40.000 4.20 0.00 35.91 2.87
85 86 5.045651 TGGCTCAAACAAATAGGAGATGAGA 60.046 40.000 4.20 0.00 35.91 3.27
86 87 5.188434 TGGCTCAAACAAATAGGAGATGAG 58.812 41.667 0.00 0.00 36.71 2.90
87 88 5.178096 TGGCTCAAACAAATAGGAGATGA 57.822 39.130 0.00 0.00 0.00 2.92
88 89 6.095860 TGAATGGCTCAAACAAATAGGAGATG 59.904 38.462 0.00 0.00 0.00 2.90
89 90 6.189859 TGAATGGCTCAAACAAATAGGAGAT 58.810 36.000 0.00 0.00 0.00 2.75
90 91 5.569355 TGAATGGCTCAAACAAATAGGAGA 58.431 37.500 0.00 0.00 0.00 3.71
91 92 5.902613 TGAATGGCTCAAACAAATAGGAG 57.097 39.130 0.00 0.00 0.00 3.69
92 93 6.855763 AATGAATGGCTCAAACAAATAGGA 57.144 33.333 0.00 0.00 37.67 2.94
93 94 9.903682 CTATAATGAATGGCTCAAACAAATAGG 57.096 33.333 0.00 0.00 37.67 2.57
96 97 8.199449 CCACTATAATGAATGGCTCAAACAAAT 58.801 33.333 0.00 0.00 37.67 2.32
97 98 7.178274 ACCACTATAATGAATGGCTCAAACAAA 59.822 33.333 0.00 0.00 37.67 2.83
98 99 6.663093 ACCACTATAATGAATGGCTCAAACAA 59.337 34.615 0.00 0.00 37.67 2.83
99 100 6.095300 CACCACTATAATGAATGGCTCAAACA 59.905 38.462 0.00 0.00 37.67 2.83
100 101 6.460123 CCACCACTATAATGAATGGCTCAAAC 60.460 42.308 0.00 0.00 37.67 2.93
101 102 5.593909 CCACCACTATAATGAATGGCTCAAA 59.406 40.000 0.00 0.00 37.67 2.69
102 103 5.132502 CCACCACTATAATGAATGGCTCAA 58.867 41.667 0.00 0.00 37.67 3.02
103 104 4.165950 ACCACCACTATAATGAATGGCTCA 59.834 41.667 4.82 0.00 38.81 4.26
104 105 4.516698 CACCACCACTATAATGAATGGCTC 59.483 45.833 4.82 0.00 35.49 4.70
105 106 4.464008 CACCACCACTATAATGAATGGCT 58.536 43.478 4.82 0.00 35.49 4.75
106 107 3.004734 GCACCACCACTATAATGAATGGC 59.995 47.826 4.82 0.00 35.49 4.40
107 108 3.569701 GGCACCACCACTATAATGAATGG 59.430 47.826 3.67 3.67 38.86 3.16
108 109 3.250762 CGGCACCACCACTATAATGAATG 59.749 47.826 0.00 0.00 39.03 2.67
109 110 3.476552 CGGCACCACCACTATAATGAAT 58.523 45.455 0.00 0.00 39.03 2.57
110 111 2.420827 CCGGCACCACCACTATAATGAA 60.421 50.000 0.00 0.00 39.03 2.57
111 112 1.140052 CCGGCACCACCACTATAATGA 59.860 52.381 0.00 0.00 39.03 2.57
112 113 1.593196 CCGGCACCACCACTATAATG 58.407 55.000 0.00 0.00 39.03 1.90
113 114 0.472471 CCCGGCACCACCACTATAAT 59.528 55.000 0.00 0.00 39.03 1.28
114 115 0.618107 TCCCGGCACCACCACTATAA 60.618 55.000 0.00 0.00 39.03 0.98
115 116 0.618107 TTCCCGGCACCACCACTATA 60.618 55.000 0.00 0.00 39.03 1.31
116 117 1.910580 CTTCCCGGCACCACCACTAT 61.911 60.000 0.00 0.00 39.03 2.12
117 118 2.527123 TTCCCGGCACCACCACTA 60.527 61.111 0.00 0.00 39.03 2.74
118 119 3.953775 CTTCCCGGCACCACCACT 61.954 66.667 0.00 0.00 39.03 4.00
128 129 2.514824 GCTAAGCTGCCTTCCCGG 60.515 66.667 0.00 0.00 32.47 5.73
129 130 2.109126 GTGCTAAGCTGCCTTCCCG 61.109 63.158 0.00 0.00 32.47 5.14
130 131 0.746204 GAGTGCTAAGCTGCCTTCCC 60.746 60.000 0.00 0.00 32.47 3.97
131 132 0.251634 AGAGTGCTAAGCTGCCTTCC 59.748 55.000 0.00 0.00 32.47 3.46
132 133 2.167487 ACTAGAGTGCTAAGCTGCCTTC 59.833 50.000 0.00 0.00 32.47 3.46
133 134 2.167487 GACTAGAGTGCTAAGCTGCCTT 59.833 50.000 0.00 0.00 35.05 4.35
134 135 1.754226 GACTAGAGTGCTAAGCTGCCT 59.246 52.381 0.00 0.00 0.00 4.75
135 136 1.202475 GGACTAGAGTGCTAAGCTGCC 60.202 57.143 0.00 0.00 33.32 4.85
136 137 1.754226 AGGACTAGAGTGCTAAGCTGC 59.246 52.381 1.33 0.00 45.07 5.25
137 138 4.464069 AAAGGACTAGAGTGCTAAGCTG 57.536 45.455 3.96 0.00 46.21 4.24
138 139 4.528596 TCAAAAGGACTAGAGTGCTAAGCT 59.471 41.667 3.96 0.00 46.21 3.74
139 140 4.822026 TCAAAAGGACTAGAGTGCTAAGC 58.178 43.478 3.96 0.00 46.21 3.09
140 141 6.031751 ACTCAAAAGGACTAGAGTGCTAAG 57.968 41.667 3.96 3.42 46.21 2.18
141 142 7.534723 TTACTCAAAAGGACTAGAGTGCTAA 57.465 36.000 3.96 0.00 46.21 3.09
142 143 7.159322 CTTACTCAAAAGGACTAGAGTGCTA 57.841 40.000 3.96 0.00 46.21 3.49
154 155 6.817765 TGCTACAATTCCTTACTCAAAAGG 57.182 37.500 0.00 0.00 46.35 3.11
155 156 7.253422 CCATGCTACAATTCCTTACTCAAAAG 58.747 38.462 0.00 0.00 0.00 2.27
156 157 6.152661 CCCATGCTACAATTCCTTACTCAAAA 59.847 38.462 0.00 0.00 0.00 2.44
157 158 5.652014 CCCATGCTACAATTCCTTACTCAAA 59.348 40.000 0.00 0.00 0.00 2.69
158 159 5.192927 CCCATGCTACAATTCCTTACTCAA 58.807 41.667 0.00 0.00 0.00 3.02
159 160 4.780815 CCCATGCTACAATTCCTTACTCA 58.219 43.478 0.00 0.00 0.00 3.41
160 161 3.565902 GCCCATGCTACAATTCCTTACTC 59.434 47.826 0.00 0.00 33.53 2.59
161 162 3.053693 TGCCCATGCTACAATTCCTTACT 60.054 43.478 0.00 0.00 38.71 2.24
162 163 3.287222 TGCCCATGCTACAATTCCTTAC 58.713 45.455 0.00 0.00 38.71 2.34
163 164 3.554934 CTGCCCATGCTACAATTCCTTA 58.445 45.455 0.00 0.00 38.71 2.69
164 165 2.381911 CTGCCCATGCTACAATTCCTT 58.618 47.619 0.00 0.00 38.71 3.36
165 166 1.410648 CCTGCCCATGCTACAATTCCT 60.411 52.381 0.00 0.00 38.71 3.36
166 167 1.035139 CCTGCCCATGCTACAATTCC 58.965 55.000 0.00 0.00 38.71 3.01
167 168 0.386838 GCCTGCCCATGCTACAATTC 59.613 55.000 0.00 0.00 38.71 2.17
168 169 0.324552 TGCCTGCCCATGCTACAATT 60.325 50.000 0.00 0.00 38.71 2.32
169 170 0.324552 TTGCCTGCCCATGCTACAAT 60.325 50.000 0.00 0.00 38.71 2.71
170 171 0.324552 ATTGCCTGCCCATGCTACAA 60.325 50.000 0.00 0.00 38.71 2.41
171 172 0.752743 GATTGCCTGCCCATGCTACA 60.753 55.000 0.00 0.00 38.71 2.74
172 173 0.466922 AGATTGCCTGCCCATGCTAC 60.467 55.000 0.00 0.00 38.71 3.58
173 174 0.179009 GAGATTGCCTGCCCATGCTA 60.179 55.000 0.00 0.00 38.71 3.49
174 175 1.455217 GAGATTGCCTGCCCATGCT 60.455 57.895 0.00 0.00 38.71 3.79
175 176 1.041447 AAGAGATTGCCTGCCCATGC 61.041 55.000 0.00 0.00 38.26 4.06
176 177 1.030457 GAAGAGATTGCCTGCCCATG 58.970 55.000 0.00 0.00 0.00 3.66
177 178 0.465097 CGAAGAGATTGCCTGCCCAT 60.465 55.000 0.00 0.00 0.00 4.00
178 179 1.078214 CGAAGAGATTGCCTGCCCA 60.078 57.895 0.00 0.00 0.00 5.36
179 180 0.179034 ATCGAAGAGATTGCCTGCCC 60.179 55.000 0.00 0.00 43.63 5.36
180 181 3.393472 ATCGAAGAGATTGCCTGCC 57.607 52.632 0.00 0.00 43.63 4.85
188 189 3.326297 GGAGGGGAATCAATCGAAGAGAT 59.674 47.826 0.00 0.00 43.63 2.75
189 190 2.700897 GGAGGGGAATCAATCGAAGAGA 59.299 50.000 0.00 0.00 43.63 3.10
190 191 2.435805 TGGAGGGGAATCAATCGAAGAG 59.564 50.000 0.00 0.00 43.63 2.85
191 192 2.435805 CTGGAGGGGAATCAATCGAAGA 59.564 50.000 0.00 0.00 45.75 2.87
192 193 2.486191 CCTGGAGGGGAATCAATCGAAG 60.486 54.545 0.00 0.00 0.00 3.79
193 194 1.490490 CCTGGAGGGGAATCAATCGAA 59.510 52.381 0.00 0.00 0.00 3.71
194 195 1.131638 CCTGGAGGGGAATCAATCGA 58.868 55.000 0.00 0.00 0.00 3.59
195 196 1.131638 TCCTGGAGGGGAATCAATCG 58.868 55.000 0.00 0.00 35.41 3.34
203 204 3.214694 TCAAGTAATTCCTGGAGGGGA 57.785 47.619 0.00 0.00 35.41 4.81
204 205 4.526438 ATTCAAGTAATTCCTGGAGGGG 57.474 45.455 0.00 0.00 35.41 4.79
205 206 8.539117 AATTAATTCAAGTAATTCCTGGAGGG 57.461 34.615 0.00 0.00 38.71 4.30
208 209 9.920946 AGCTAATTAATTCAAGTAATTCCTGGA 57.079 29.630 6.11 0.00 38.71 3.86
209 210 9.956720 CAGCTAATTAATTCAAGTAATTCCTGG 57.043 33.333 6.11 0.00 38.71 4.45
210 211 9.956720 CCAGCTAATTAATTCAAGTAATTCCTG 57.043 33.333 16.43 16.43 38.71 3.86
211 212 8.633561 GCCAGCTAATTAATTCAAGTAATTCCT 58.366 33.333 6.11 2.68 38.71 3.36
212 213 7.867909 GGCCAGCTAATTAATTCAAGTAATTCC 59.132 37.037 6.11 0.00 38.71 3.01
213 214 7.867909 GGGCCAGCTAATTAATTCAAGTAATTC 59.132 37.037 4.39 0.00 38.71 2.17
214 215 7.344352 TGGGCCAGCTAATTAATTCAAGTAATT 59.656 33.333 0.00 7.89 40.87 1.40
215 216 6.838612 TGGGCCAGCTAATTAATTCAAGTAAT 59.161 34.615 0.00 0.00 0.00 1.89
216 217 6.096282 GTGGGCCAGCTAATTAATTCAAGTAA 59.904 38.462 6.40 0.00 0.00 2.24
217 218 5.592688 GTGGGCCAGCTAATTAATTCAAGTA 59.407 40.000 6.40 0.00 0.00 2.24
218 219 4.402474 GTGGGCCAGCTAATTAATTCAAGT 59.598 41.667 6.40 0.00 0.00 3.16
219 220 4.498009 CGTGGGCCAGCTAATTAATTCAAG 60.498 45.833 6.40 0.00 0.00 3.02
220 221 3.380004 CGTGGGCCAGCTAATTAATTCAA 59.620 43.478 6.40 0.00 0.00 2.69
221 222 2.948979 CGTGGGCCAGCTAATTAATTCA 59.051 45.455 6.40 0.00 0.00 2.57
222 223 2.293399 CCGTGGGCCAGCTAATTAATTC 59.707 50.000 6.40 0.00 0.00 2.17
223 224 2.092103 TCCGTGGGCCAGCTAATTAATT 60.092 45.455 6.40 5.89 0.00 1.40
224 225 1.493022 TCCGTGGGCCAGCTAATTAAT 59.507 47.619 6.40 0.00 0.00 1.40
225 226 0.913205 TCCGTGGGCCAGCTAATTAA 59.087 50.000 6.40 0.00 0.00 1.40
226 227 0.468226 CTCCGTGGGCCAGCTAATTA 59.532 55.000 6.40 0.00 0.00 1.40
227 228 1.224592 CTCCGTGGGCCAGCTAATT 59.775 57.895 6.40 0.00 0.00 1.40
228 229 1.995626 ACTCCGTGGGCCAGCTAAT 60.996 57.895 6.40 0.00 0.00 1.73
229 230 2.606519 ACTCCGTGGGCCAGCTAA 60.607 61.111 6.40 0.00 0.00 3.09
230 231 3.390521 CACTCCGTGGGCCAGCTA 61.391 66.667 6.40 0.00 0.00 3.32
232 233 3.723912 TATTTCACTCCGTGGGCCAGC 62.724 57.143 6.40 0.45 33.87 4.85
233 234 0.251916 TATTTCACTCCGTGGGCCAG 59.748 55.000 6.40 0.41 33.87 4.85
234 235 0.916086 ATATTTCACTCCGTGGGCCA 59.084 50.000 0.00 0.00 33.87 5.36
235 236 1.134220 TGATATTTCACTCCGTGGGCC 60.134 52.381 0.00 0.00 33.87 5.80
236 237 2.325583 TGATATTTCACTCCGTGGGC 57.674 50.000 0.00 0.00 33.87 5.36
237 238 4.261801 AGTTTGATATTTCACTCCGTGGG 58.738 43.478 0.00 0.00 33.87 4.61
238 239 6.106673 ACTAGTTTGATATTTCACTCCGTGG 58.893 40.000 0.00 0.00 33.87 4.94
239 240 6.255887 GGACTAGTTTGATATTTCACTCCGTG 59.744 42.308 0.00 0.00 34.45 4.94
240 241 6.338937 GGACTAGTTTGATATTTCACTCCGT 58.661 40.000 0.00 0.00 0.00 4.69
241 242 5.753921 GGGACTAGTTTGATATTTCACTCCG 59.246 44.000 0.00 0.00 0.00 4.63
242 243 5.753921 CGGGACTAGTTTGATATTTCACTCC 59.246 44.000 0.00 0.00 0.00 3.85
243 244 6.338937 ACGGGACTAGTTTGATATTTCACTC 58.661 40.000 0.00 0.00 0.00 3.51
244 245 6.295719 ACGGGACTAGTTTGATATTTCACT 57.704 37.500 0.00 0.00 0.00 3.41
245 246 6.980051 AACGGGACTAGTTTGATATTTCAC 57.020 37.500 0.00 0.00 0.00 3.18
246 247 8.701895 AGATAACGGGACTAGTTTGATATTTCA 58.298 33.333 0.00 0.00 33.42 2.69
247 248 8.979574 CAGATAACGGGACTAGTTTGATATTTC 58.020 37.037 0.00 0.00 33.42 2.17
248 249 8.701895 TCAGATAACGGGACTAGTTTGATATTT 58.298 33.333 0.00 0.00 33.42 1.40
249 250 8.246430 TCAGATAACGGGACTAGTTTGATATT 57.754 34.615 0.00 0.00 33.42 1.28
250 251 7.834881 TCAGATAACGGGACTAGTTTGATAT 57.165 36.000 0.00 0.00 33.42 1.63
251 252 7.558807 TCTTCAGATAACGGGACTAGTTTGATA 59.441 37.037 0.00 0.00 33.42 2.15
252 253 6.380274 TCTTCAGATAACGGGACTAGTTTGAT 59.620 38.462 0.00 0.00 33.42 2.57
253 254 5.713389 TCTTCAGATAACGGGACTAGTTTGA 59.287 40.000 0.00 0.00 33.42 2.69
254 255 5.962433 TCTTCAGATAACGGGACTAGTTTG 58.038 41.667 0.00 0.00 33.42 2.93
255 256 5.394333 GCTCTTCAGATAACGGGACTAGTTT 60.394 44.000 0.00 0.00 33.42 2.66
256 257 4.098196 GCTCTTCAGATAACGGGACTAGTT 59.902 45.833 0.00 0.00 35.75 2.24
257 258 3.633065 GCTCTTCAGATAACGGGACTAGT 59.367 47.826 0.00 0.00 0.00 2.57
258 259 3.886505 AGCTCTTCAGATAACGGGACTAG 59.113 47.826 0.00 0.00 0.00 2.57
259 260 3.899726 AGCTCTTCAGATAACGGGACTA 58.100 45.455 0.00 0.00 0.00 2.59
260 261 2.741145 AGCTCTTCAGATAACGGGACT 58.259 47.619 0.00 0.00 0.00 3.85
261 262 4.857509 ATAGCTCTTCAGATAACGGGAC 57.142 45.455 0.00 0.00 0.00 4.46
262 263 4.893524 TGAATAGCTCTTCAGATAACGGGA 59.106 41.667 10.27 0.00 31.65 5.14
263 264 5.201713 TGAATAGCTCTTCAGATAACGGG 57.798 43.478 10.27 0.00 31.65 5.28
264 265 6.292596 GCTTTGAATAGCTCTTCAGATAACGG 60.293 42.308 13.52 0.77 36.55 4.44
265 266 6.644775 GCTTTGAATAGCTCTTCAGATAACG 58.355 40.000 13.52 1.09 36.55 3.18
356 357 1.474330 TCGGATGCAGCTCTTGACTA 58.526 50.000 0.22 0.00 0.00 2.59
367 368 4.467084 GAGCGGGGTTCGGATGCA 62.467 66.667 0.00 0.00 39.69 3.96
503 504 2.995466 CACGCAATGTGTCCAGAATT 57.005 45.000 0.00 0.00 43.88 2.17
780 781 2.016318 GCCGATCACATCACATCCAAA 58.984 47.619 0.00 0.00 0.00 3.28
818 819 7.954666 TTGATTTCCTTCCTTATACCAAAGG 57.045 36.000 0.00 0.00 46.35 3.11
819 820 8.802267 TGTTTGATTTCCTTCCTTATACCAAAG 58.198 33.333 0.00 0.00 0.00 2.77
845 850 3.380320 CCCTTTTCCTTCTCAAACAACGT 59.620 43.478 0.00 0.00 0.00 3.99
1611 1621 6.767902 ACCGTGCACATTCTTATTATGAGAAT 59.232 34.615 18.64 6.43 42.89 2.40
2120 2130 6.349777 CCTCTTTAGCCCTATGTCTCTTATCG 60.350 46.154 0.00 0.00 0.00 2.92
2188 2198 7.220300 GTCTACGTACCAGAACTGATAACATTG 59.780 40.741 3.19 0.00 0.00 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.