Multiple sequence alignment - TraesCS7D01G285000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G285000 chr7D 100.000 5862 0 0 1 5862 306462826 306456965 0.000000e+00 10826.0
1 TraesCS7D01G285000 chr7D 88.206 407 29 5 1 396 150586165 150585767 8.890000e-128 468.0
2 TraesCS7D01G285000 chr7D 86.453 406 38 8 1 393 414309223 414309624 4.200000e-116 429.0
3 TraesCS7D01G285000 chr7D 91.566 83 5 2 4078 4159 306458668 306458749 4.800000e-21 113.0
4 TraesCS7D01G285000 chr7D 100.000 50 0 0 2542 2591 306460236 306460285 6.250000e-15 93.5
5 TraesCS7D01G285000 chr7D 90.244 41 3 1 2562 2601 47416188 47416228 1.100000e-02 52.8
6 TraesCS7D01G285000 chr7D 88.636 44 3 2 2551 2593 576360508 576360550 1.100000e-02 52.8
7 TraesCS7D01G285000 chr7A 97.190 5480 117 18 394 5862 359048497 359053950 0.000000e+00 9232.0
8 TraesCS7D01G285000 chr7A 91.566 83 5 2 4078 4159 359052251 359052170 4.800000e-21 113.0
9 TraesCS7D01G285000 chr7B 97.197 4495 82 14 767 5245 282328832 282333298 0.000000e+00 7563.0
10 TraesCS7D01G285000 chr7B 97.059 340 10 0 5396 5735 282333335 282333674 1.830000e-159 573.0
11 TraesCS7D01G285000 chr7B 95.161 124 6 0 394 517 282328718 282328841 4.630000e-46 196.0
12 TraesCS7D01G285000 chr7B 91.566 83 5 2 4078 4159 282332205 282332124 4.800000e-21 113.0
13 TraesCS7D01G285000 chr7B 94.118 68 2 1 5795 5862 282334037 282334102 1.040000e-17 102.0
14 TraesCS7D01G285000 chr7B 98.039 51 1 0 2542 2592 282330653 282330603 8.090000e-14 89.8
15 TraesCS7D01G285000 chr7B 100.000 33 0 0 362 394 377816544 377816512 1.760000e-05 62.1
16 TraesCS7D01G285000 chr7B 100.000 30 0 0 5325 5354 282333299 282333328 8.210000e-04 56.5
17 TraesCS7D01G285000 chrUn 91.908 346 18 1 64 399 97052423 97052078 5.320000e-130 475.0
18 TraesCS7D01G285000 chr4D 86.946 406 38 6 2 394 64225792 64226195 5.390000e-120 442.0
19 TraesCS7D01G285000 chr6D 86.553 409 40 6 4 400 55668408 55668813 2.510000e-118 436.0
20 TraesCS7D01G285000 chr6D 86.275 408 40 7 1 395 340953664 340953260 4.200000e-116 429.0
21 TraesCS7D01G285000 chr6D 86.453 406 36 9 1 393 383561880 383561481 1.510000e-115 427.0
22 TraesCS7D01G285000 chr6D 87.368 95 4 8 4079 4170 309955221 309955310 1.040000e-17 102.0
23 TraesCS7D01G285000 chr2D 88.462 364 37 5 1 361 325744250 325744611 9.020000e-118 435.0
24 TraesCS7D01G285000 chr2D 86.056 251 28 5 5617 5862 114519849 114519601 4.500000e-66 263.0
25 TraesCS7D01G285000 chr2D 93.220 59 4 0 5469 5527 114520021 114520079 2.910000e-13 87.9
26 TraesCS7D01G285000 chr4A 86.241 407 41 10 1 393 440200319 440199914 1.510000e-115 427.0
27 TraesCS7D01G285000 chr4A 78.816 321 47 13 94 402 516644066 516643755 4.630000e-46 196.0
28 TraesCS7D01G285000 chr1D 88.154 363 37 5 1 361 234862160 234861802 1.510000e-115 427.0
29 TraesCS7D01G285000 chr1D 80.800 250 34 7 5617 5862 160423151 160422912 3.610000e-42 183.0
30 TraesCS7D01G285000 chr2B 82.521 349 38 9 57 394 722514850 722514514 9.610000e-73 285.0
31 TraesCS7D01G285000 chr2B 87.200 250 26 4 5617 5862 164903516 164903269 4.470000e-71 279.0
32 TraesCS7D01G285000 chr2B 92.683 82 1 5 4079 4157 693753288 693753367 4.800000e-21 113.0
33 TraesCS7D01G285000 chr2B 94.915 59 3 0 5469 5527 164903695 164903753 6.250000e-15 93.5
34 TraesCS7D01G285000 chr2A 87.600 250 24 5 5617 5862 115715437 115715191 3.460000e-72 283.0
35 TraesCS7D01G285000 chr2A 96.970 33 1 0 2565 2597 156370826 156370794 8.210000e-04 56.5
36 TraesCS7D01G285000 chr5B 82.283 254 35 6 522 767 295070128 295070379 1.660000e-50 211.0
37 TraesCS7D01G285000 chr5B 92.308 78 4 2 4080 4157 355601227 355601152 6.210000e-20 110.0
38 TraesCS7D01G285000 chr3B 80.827 266 30 9 163 417 336825659 336825404 7.750000e-44 189.0
39 TraesCS7D01G285000 chr3B 92.157 51 4 0 518 568 787836076 787836026 8.150000e-09 73.1
40 TraesCS7D01G285000 chr3B 100.000 34 0 0 361 394 572683107 572683074 4.900000e-06 63.9
41 TraesCS7D01G285000 chr3A 93.827 81 1 4 4081 4159 430526505 430526427 1.030000e-22 119.0
42 TraesCS7D01G285000 chr3A 100.000 30 0 0 367 396 648534568 648534597 8.210000e-04 56.5
43 TraesCS7D01G285000 chr5D 77.512 209 25 7 206 394 520085454 520085248 8.030000e-19 106.0
44 TraesCS7D01G285000 chr6A 89.286 56 0 1 2542 2597 529567064 529567113 1.360000e-06 65.8
45 TraesCS7D01G285000 chr5A 94.737 38 1 1 2565 2601 382114886 382114849 2.280000e-04 58.4
46 TraesCS7D01G285000 chr3D 96.970 33 1 0 361 393 132922086 132922118 8.210000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G285000 chr7D 306456965 306462826 5861 True 10826.0 10826 100.000 1 5862 1 chr7D.!!$R2 5861
1 TraesCS7D01G285000 chr7A 359048497 359053950 5453 False 9232.0 9232 97.190 394 5862 1 chr7A.!!$F1 5468
2 TraesCS7D01G285000 chr7B 282328718 282334102 5384 False 1698.1 7563 96.707 394 5862 5 chr7B.!!$F1 5468


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
284 285 0.030101 ATTTTGCCACACACCGAACG 59.970 50.000 0.00 0.0 0.00 3.95 F
374 375 0.179166 GCGGCAATACACCACACATG 60.179 55.000 0.00 0.0 0.00 3.21 F
388 389 0.378257 CACATGTGGCAGTTATCGGC 59.622 55.000 18.51 0.0 0.00 5.54 F
2066 2071 0.386113 GCGTGGCTCTACCTCCTTAG 59.614 60.000 0.00 0.0 40.22 2.18 F
2465 2470 2.364002 GCCTAAAGGGTCAAGTTTGCAA 59.636 45.455 0.00 0.0 37.43 4.08 F
3644 3652 2.025321 ACAACTCCAGTCAACAAAGGGT 60.025 45.455 0.00 0.0 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1187 1192 2.395360 GCCACAATTACGCGCTCCA 61.395 57.895 5.73 0.00 0.00 3.86 R
1534 1539 4.008074 AGACACCCATGTGACTGTAAAG 57.992 45.455 0.00 0.00 44.07 1.85 R
2433 2438 1.749258 CTTTAGGCCCCGCTTGGAC 60.749 63.158 0.00 0.00 35.39 4.02 R
3644 3652 3.824443 CTGGATATTGAATGGCATGCTCA 59.176 43.478 18.92 14.25 0.00 4.26 R
4201 4209 4.887071 CCACTGCCATTAACCTATAAGCAA 59.113 41.667 0.00 0.00 0.00 3.91 R
4925 4944 1.663643 TCGAATCGGCATCTTTTTCCG 59.336 47.619 1.76 0.00 44.16 4.30 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.959149 GATCCACTTGTTTTTAGCTCGTC 58.041 43.478 0.00 0.00 0.00 4.20
23 24 2.798283 TCCACTTGTTTTTAGCTCGTCG 59.202 45.455 0.00 0.00 0.00 5.12
24 25 2.542595 CCACTTGTTTTTAGCTCGTCGT 59.457 45.455 0.00 0.00 0.00 4.34
25 26 3.362693 CCACTTGTTTTTAGCTCGTCGTC 60.363 47.826 0.00 0.00 0.00 4.20
26 27 3.489785 CACTTGTTTTTAGCTCGTCGTCT 59.510 43.478 0.00 0.00 0.00 4.18
27 28 4.025979 CACTTGTTTTTAGCTCGTCGTCTT 60.026 41.667 0.00 0.00 0.00 3.01
28 29 4.025979 ACTTGTTTTTAGCTCGTCGTCTTG 60.026 41.667 0.00 0.00 0.00 3.02
29 30 2.798283 TGTTTTTAGCTCGTCGTCTTGG 59.202 45.455 0.00 0.00 0.00 3.61
30 31 2.074547 TTTTAGCTCGTCGTCTTGGG 57.925 50.000 0.00 0.00 0.00 4.12
31 32 1.250328 TTTAGCTCGTCGTCTTGGGA 58.750 50.000 0.00 0.00 0.00 4.37
32 33 0.809385 TTAGCTCGTCGTCTTGGGAG 59.191 55.000 0.00 0.00 0.00 4.30
33 34 1.030488 TAGCTCGTCGTCTTGGGAGG 61.030 60.000 0.00 0.00 0.00 4.30
34 35 2.885861 CTCGTCGTCTTGGGAGGG 59.114 66.667 0.00 0.00 0.00 4.30
35 36 1.977544 CTCGTCGTCTTGGGAGGGT 60.978 63.158 0.00 0.00 0.00 4.34
36 37 2.214181 CTCGTCGTCTTGGGAGGGTG 62.214 65.000 0.00 0.00 0.00 4.61
37 38 2.663196 GTCGTCTTGGGAGGGTGG 59.337 66.667 0.00 0.00 0.00 4.61
38 39 2.606519 TCGTCTTGGGAGGGTGGG 60.607 66.667 0.00 0.00 0.00 4.61
39 40 3.717294 CGTCTTGGGAGGGTGGGG 61.717 72.222 0.00 0.00 0.00 4.96
40 41 2.531942 GTCTTGGGAGGGTGGGGT 60.532 66.667 0.00 0.00 0.00 4.95
41 42 2.160853 GTCTTGGGAGGGTGGGGTT 61.161 63.158 0.00 0.00 0.00 4.11
42 43 2.160171 TCTTGGGAGGGTGGGGTTG 61.160 63.158 0.00 0.00 0.00 3.77
43 44 3.189646 TTGGGAGGGTGGGGTTGG 61.190 66.667 0.00 0.00 0.00 3.77
44 45 3.759073 TTGGGAGGGTGGGGTTGGA 62.759 63.158 0.00 0.00 0.00 3.53
45 46 3.339093 GGGAGGGTGGGGTTGGAG 61.339 72.222 0.00 0.00 0.00 3.86
46 47 3.339093 GGAGGGTGGGGTTGGAGG 61.339 72.222 0.00 0.00 0.00 4.30
47 48 3.339093 GAGGGTGGGGTTGGAGGG 61.339 72.222 0.00 0.00 0.00 4.30
81 82 4.419921 GGGGGTGGGTGGTTAGCG 62.420 72.222 0.00 0.00 0.00 4.26
82 83 4.419921 GGGGTGGGTGGTTAGCGG 62.420 72.222 0.00 0.00 0.00 5.52
83 84 3.643554 GGGTGGGTGGTTAGCGGT 61.644 66.667 0.00 0.00 0.00 5.68
84 85 2.359478 GGTGGGTGGTTAGCGGTG 60.359 66.667 0.00 0.00 0.00 4.94
85 86 2.359478 GTGGGTGGTTAGCGGTGG 60.359 66.667 0.00 0.00 0.00 4.61
86 87 3.642503 TGGGTGGTTAGCGGTGGG 61.643 66.667 0.00 0.00 0.00 4.61
87 88 3.324108 GGGTGGTTAGCGGTGGGA 61.324 66.667 0.00 0.00 0.00 4.37
88 89 2.751688 GGTGGTTAGCGGTGGGAA 59.248 61.111 0.00 0.00 0.00 3.97
89 90 1.376812 GGTGGTTAGCGGTGGGAAG 60.377 63.158 0.00 0.00 0.00 3.46
90 91 1.376812 GTGGTTAGCGGTGGGAAGG 60.377 63.158 0.00 0.00 0.00 3.46
91 92 2.437895 GGTTAGCGGTGGGAAGGC 60.438 66.667 0.00 0.00 0.00 4.35
92 93 2.818274 GTTAGCGGTGGGAAGGCG 60.818 66.667 0.00 0.00 0.00 5.52
93 94 4.770874 TTAGCGGTGGGAAGGCGC 62.771 66.667 0.00 0.00 0.00 6.53
97 98 4.530857 CGGTGGGAAGGCGCTAGG 62.531 72.222 7.64 0.00 0.00 3.02
98 99 4.176752 GGTGGGAAGGCGCTAGGG 62.177 72.222 7.64 1.65 0.00 3.53
99 100 3.081409 GTGGGAAGGCGCTAGGGA 61.081 66.667 11.61 0.00 0.00 4.20
100 101 2.040884 TGGGAAGGCGCTAGGGAT 60.041 61.111 11.61 0.00 0.00 3.85
101 102 2.140792 TGGGAAGGCGCTAGGGATC 61.141 63.158 11.61 5.18 0.00 3.36
102 103 1.839296 GGGAAGGCGCTAGGGATCT 60.839 63.158 11.61 4.19 0.00 2.75
103 104 1.369321 GGAAGGCGCTAGGGATCTG 59.631 63.158 11.61 0.00 0.00 2.90
104 105 1.301322 GAAGGCGCTAGGGATCTGC 60.301 63.158 11.61 2.04 0.00 4.26
105 106 1.753368 GAAGGCGCTAGGGATCTGCT 61.753 60.000 11.61 0.00 0.00 4.24
106 107 1.341156 AAGGCGCTAGGGATCTGCTT 61.341 55.000 11.61 0.00 0.00 3.91
107 108 1.147153 GGCGCTAGGGATCTGCTTT 59.853 57.895 11.61 0.00 0.00 3.51
108 109 1.162800 GGCGCTAGGGATCTGCTTTG 61.163 60.000 11.61 0.00 0.00 2.77
109 110 1.162800 GCGCTAGGGATCTGCTTTGG 61.163 60.000 11.61 0.00 0.00 3.28
110 111 0.179000 CGCTAGGGATCTGCTTTGGT 59.821 55.000 0.00 0.00 0.00 3.67
111 112 1.407437 CGCTAGGGATCTGCTTTGGTT 60.407 52.381 0.00 0.00 0.00 3.67
112 113 2.019984 GCTAGGGATCTGCTTTGGTTG 58.980 52.381 0.00 0.00 0.00 3.77
113 114 2.019984 CTAGGGATCTGCTTTGGTTGC 58.980 52.381 0.00 0.00 0.00 4.17
114 115 0.613012 AGGGATCTGCTTTGGTTGCC 60.613 55.000 0.00 0.00 0.00 4.52
115 116 0.899717 GGGATCTGCTTTGGTTGCCA 60.900 55.000 0.00 0.00 0.00 4.92
116 117 1.188863 GGATCTGCTTTGGTTGCCAT 58.811 50.000 0.00 0.00 31.53 4.40
117 118 1.134907 GGATCTGCTTTGGTTGCCATG 60.135 52.381 0.00 0.00 31.53 3.66
118 119 0.899720 ATCTGCTTTGGTTGCCATGG 59.100 50.000 7.63 7.63 31.53 3.66
119 120 1.375013 CTGCTTTGGTTGCCATGGC 60.375 57.895 30.54 30.54 42.35 4.40
129 130 4.421365 GCCATGGCAACCAGAGAA 57.579 55.556 32.08 0.00 36.75 2.87
130 131 2.187073 GCCATGGCAACCAGAGAAG 58.813 57.895 32.08 0.00 36.75 2.85
131 132 1.318158 GCCATGGCAACCAGAGAAGG 61.318 60.000 32.08 0.00 36.75 3.46
132 133 0.329261 CCATGGCAACCAGAGAAGGA 59.671 55.000 0.00 0.00 36.75 3.36
133 134 1.272092 CCATGGCAACCAGAGAAGGAA 60.272 52.381 0.00 0.00 36.75 3.36
134 135 2.089980 CATGGCAACCAGAGAAGGAAG 58.910 52.381 0.00 0.00 36.75 3.46
135 136 0.401738 TGGCAACCAGAGAAGGAAGG 59.598 55.000 0.00 0.00 0.00 3.46
136 137 0.962855 GGCAACCAGAGAAGGAAGGC 60.963 60.000 0.00 0.00 0.00 4.35
137 138 1.301677 GCAACCAGAGAAGGAAGGCG 61.302 60.000 0.00 0.00 0.00 5.52
138 139 0.321671 CAACCAGAGAAGGAAGGCGA 59.678 55.000 0.00 0.00 0.00 5.54
139 140 1.065854 CAACCAGAGAAGGAAGGCGAT 60.066 52.381 0.00 0.00 0.00 4.58
140 141 1.280457 ACCAGAGAAGGAAGGCGATT 58.720 50.000 0.00 0.00 0.00 3.34
141 142 1.065854 ACCAGAGAAGGAAGGCGATTG 60.066 52.381 0.00 0.00 0.00 2.67
142 143 1.208052 CCAGAGAAGGAAGGCGATTGA 59.792 52.381 0.00 0.00 0.00 2.57
143 144 2.548875 CAGAGAAGGAAGGCGATTGAG 58.451 52.381 0.00 0.00 0.00 3.02
144 145 1.484240 AGAGAAGGAAGGCGATTGAGG 59.516 52.381 0.00 0.00 0.00 3.86
145 146 1.208293 GAGAAGGAAGGCGATTGAGGT 59.792 52.381 0.00 0.00 0.00 3.85
146 147 2.431057 GAGAAGGAAGGCGATTGAGGTA 59.569 50.000 0.00 0.00 0.00 3.08
147 148 2.432510 AGAAGGAAGGCGATTGAGGTAG 59.567 50.000 0.00 0.00 0.00 3.18
148 149 1.123928 AGGAAGGCGATTGAGGTAGG 58.876 55.000 0.00 0.00 0.00 3.18
149 150 0.106894 GGAAGGCGATTGAGGTAGGG 59.893 60.000 0.00 0.00 0.00 3.53
150 151 0.106894 GAAGGCGATTGAGGTAGGGG 59.893 60.000 0.00 0.00 0.00 4.79
151 152 0.326238 AAGGCGATTGAGGTAGGGGA 60.326 55.000 0.00 0.00 0.00 4.81
152 153 0.104934 AGGCGATTGAGGTAGGGGAT 60.105 55.000 0.00 0.00 0.00 3.85
153 154 0.321996 GGCGATTGAGGTAGGGGATC 59.678 60.000 0.00 0.00 0.00 3.36
154 155 0.038159 GCGATTGAGGTAGGGGATCG 60.038 60.000 0.00 0.00 41.67 3.69
155 156 1.617322 CGATTGAGGTAGGGGATCGA 58.383 55.000 0.00 0.00 41.37 3.59
156 157 1.542030 CGATTGAGGTAGGGGATCGAG 59.458 57.143 0.00 0.00 41.37 4.04
157 158 2.814469 CGATTGAGGTAGGGGATCGAGA 60.814 54.545 0.00 0.00 41.37 4.04
158 159 2.366640 TTGAGGTAGGGGATCGAGAG 57.633 55.000 0.00 0.00 0.00 3.20
159 160 0.478942 TGAGGTAGGGGATCGAGAGG 59.521 60.000 0.00 0.00 0.00 3.69
160 161 0.479378 GAGGTAGGGGATCGAGAGGT 59.521 60.000 0.00 0.00 0.00 3.85
161 162 1.704070 GAGGTAGGGGATCGAGAGGTA 59.296 57.143 0.00 0.00 0.00 3.08
162 163 1.706305 AGGTAGGGGATCGAGAGGTAG 59.294 57.143 0.00 0.00 0.00 3.18
163 164 1.272037 GGTAGGGGATCGAGAGGTAGG 60.272 61.905 0.00 0.00 0.00 3.18
164 165 1.704070 GTAGGGGATCGAGAGGTAGGA 59.296 57.143 0.00 0.00 0.00 2.94
165 166 0.774908 AGGGGATCGAGAGGTAGGAG 59.225 60.000 0.00 0.00 0.00 3.69
166 167 0.772384 GGGGATCGAGAGGTAGGAGA 59.228 60.000 0.00 0.00 0.00 3.71
167 168 1.546099 GGGGATCGAGAGGTAGGAGAC 60.546 61.905 0.00 0.00 0.00 3.36
168 169 1.515081 GGATCGAGAGGTAGGAGACG 58.485 60.000 0.00 0.00 0.00 4.18
169 170 1.070445 GGATCGAGAGGTAGGAGACGA 59.930 57.143 0.00 0.00 0.00 4.20
170 171 2.137523 GATCGAGAGGTAGGAGACGAC 58.862 57.143 0.00 0.00 34.90 4.34
171 172 0.179116 TCGAGAGGTAGGAGACGACG 60.179 60.000 0.00 0.00 36.74 5.12
172 173 1.152989 CGAGAGGTAGGAGACGACGG 61.153 65.000 0.00 0.00 36.74 4.79
173 174 1.438562 GAGAGGTAGGAGACGACGGC 61.439 65.000 0.00 0.00 36.74 5.68
174 175 2.821688 GAGGTAGGAGACGACGGCG 61.822 68.421 10.39 10.39 44.79 6.46
175 176 2.821366 GGTAGGAGACGACGGCGA 60.821 66.667 22.49 0.00 41.64 5.54
176 177 2.402787 GTAGGAGACGACGGCGAC 59.597 66.667 22.49 13.05 41.64 5.19
177 178 2.046988 TAGGAGACGACGGCGACA 60.047 61.111 22.49 0.00 41.64 4.35
178 179 2.393768 TAGGAGACGACGGCGACAC 61.394 63.158 22.49 10.64 41.64 3.67
191 192 2.987547 GACACGTCGGTCTGGGGA 60.988 66.667 0.00 0.00 34.92 4.81
192 193 2.283676 ACACGTCGGTCTGGGGAT 60.284 61.111 0.00 0.00 0.00 3.85
193 194 2.280823 GACACGTCGGTCTGGGGATC 62.281 65.000 0.00 0.00 34.92 3.36
194 195 3.138798 ACGTCGGTCTGGGGATCG 61.139 66.667 0.00 0.00 46.36 3.69
200 201 2.604118 GGTCTGGGGATCGAAAGGA 58.396 57.895 0.00 0.00 0.00 3.36
201 202 0.466124 GGTCTGGGGATCGAAAGGAG 59.534 60.000 0.00 0.00 0.00 3.69
202 203 0.466124 GTCTGGGGATCGAAAGGAGG 59.534 60.000 0.00 0.00 0.00 4.30
203 204 1.147153 CTGGGGATCGAAAGGAGGC 59.853 63.158 0.00 0.00 0.00 4.70
204 205 2.330924 CTGGGGATCGAAAGGAGGCC 62.331 65.000 0.00 0.00 0.00 5.19
205 206 2.109181 GGGATCGAAAGGAGGCCG 59.891 66.667 0.00 0.00 0.00 6.13
206 207 2.109181 GGATCGAAAGGAGGCCGG 59.891 66.667 0.00 0.00 0.00 6.13
207 208 2.109181 GATCGAAAGGAGGCCGGG 59.891 66.667 2.18 0.00 0.00 5.73
208 209 2.365105 ATCGAAAGGAGGCCGGGA 60.365 61.111 2.18 0.00 0.00 5.14
209 210 2.646117 GATCGAAAGGAGGCCGGGAC 62.646 65.000 2.18 0.00 0.00 4.46
257 258 4.974989 GGTCGTTTGCCCGGACGT 62.975 66.667 0.73 0.00 40.03 4.34
258 259 3.708734 GTCGTTTGCCCGGACGTG 61.709 66.667 0.73 0.00 40.03 4.49
259 260 4.973055 TCGTTTGCCCGGACGTGG 62.973 66.667 0.73 0.00 40.03 4.94
268 269 4.770874 CGGACGTGGGGGCGATTT 62.771 66.667 0.00 0.00 35.59 2.17
269 270 2.360726 GGACGTGGGGGCGATTTT 60.361 61.111 0.00 0.00 35.59 1.82
270 271 2.696759 GGACGTGGGGGCGATTTTG 61.697 63.158 0.00 0.00 35.59 2.44
271 272 3.336715 GACGTGGGGGCGATTTTGC 62.337 63.158 0.00 0.00 35.59 3.68
279 280 4.243383 GCGATTTTGCCACACACC 57.757 55.556 0.00 0.00 0.00 4.16
280 281 1.729131 GCGATTTTGCCACACACCG 60.729 57.895 0.00 0.00 0.00 4.94
281 282 1.945522 CGATTTTGCCACACACCGA 59.054 52.632 0.00 0.00 0.00 4.69
282 283 0.309302 CGATTTTGCCACACACCGAA 59.691 50.000 0.00 0.00 0.00 4.30
283 284 1.766069 GATTTTGCCACACACCGAAC 58.234 50.000 0.00 0.00 0.00 3.95
284 285 0.030101 ATTTTGCCACACACCGAACG 59.970 50.000 0.00 0.00 0.00 3.95
285 286 1.306642 TTTTGCCACACACCGAACGT 61.307 50.000 0.00 0.00 0.00 3.99
297 298 3.712881 GAACGTGCGGGCTGTGAC 61.713 66.667 0.00 0.00 0.00 3.67
298 299 4.235762 AACGTGCGGGCTGTGACT 62.236 61.111 0.00 0.00 0.00 3.41
299 300 4.969196 ACGTGCGGGCTGTGACTG 62.969 66.667 0.00 0.00 0.00 3.51
300 301 4.969196 CGTGCGGGCTGTGACTGT 62.969 66.667 0.00 0.00 0.00 3.55
301 302 3.349006 GTGCGGGCTGTGACTGTG 61.349 66.667 0.00 0.00 0.00 3.66
343 344 3.719144 CGGGTTCGTTTCCGTGCC 61.719 66.667 0.00 0.00 41.23 5.01
344 345 2.592287 GGGTTCGTTTCCGTGCCA 60.592 61.111 0.00 0.00 35.01 4.92
345 346 2.635338 GGTTCGTTTCCGTGCCAC 59.365 61.111 0.00 0.00 35.01 5.01
346 347 2.181521 GGTTCGTTTCCGTGCCACA 61.182 57.895 0.00 0.00 35.01 4.17
347 348 1.010462 GTTCGTTTCCGTGCCACAC 60.010 57.895 0.00 0.00 35.01 3.82
348 349 1.449778 TTCGTTTCCGTGCCACACA 60.450 52.632 0.00 0.00 33.40 3.72
349 350 1.433053 TTCGTTTCCGTGCCACACAG 61.433 55.000 0.00 0.00 33.40 3.66
350 351 2.892334 CGTTTCCGTGCCACACAGG 61.892 63.158 0.00 1.06 41.84 4.00
363 364 4.402528 ACAGGGCGTGCGGCAATA 62.403 61.111 19.13 0.00 46.16 1.90
364 365 3.876198 CAGGGCGTGCGGCAATAC 61.876 66.667 19.13 0.00 46.16 1.89
365 366 4.402528 AGGGCGTGCGGCAATACA 62.403 61.111 19.13 0.00 46.16 2.29
366 367 4.174129 GGGCGTGCGGCAATACAC 62.174 66.667 19.13 0.00 46.16 2.90
367 368 4.174129 GGCGTGCGGCAATACACC 62.174 66.667 3.23 0.00 46.16 4.16
368 369 3.427425 GCGTGCGGCAATACACCA 61.427 61.111 3.23 0.00 42.87 4.17
369 370 2.478746 CGTGCGGCAATACACCAC 59.521 61.111 3.23 0.00 33.09 4.16
370 371 2.321333 CGTGCGGCAATACACCACA 61.321 57.895 3.23 0.00 33.09 4.17
371 372 1.209127 GTGCGGCAATACACCACAC 59.791 57.895 3.23 0.00 33.45 3.82
372 373 1.227973 TGCGGCAATACACCACACA 60.228 52.632 0.00 0.00 0.00 3.72
373 374 0.607762 TGCGGCAATACACCACACAT 60.608 50.000 0.00 0.00 0.00 3.21
374 375 0.179166 GCGGCAATACACCACACATG 60.179 55.000 0.00 0.00 0.00 3.21
375 376 1.164411 CGGCAATACACCACACATGT 58.836 50.000 0.00 0.00 0.00 3.21
376 377 1.135717 CGGCAATACACCACACATGTG 60.136 52.381 24.25 24.25 45.23 3.21
386 387 2.811902 CACACATGTGGCAGTTATCG 57.188 50.000 28.64 0.77 42.10 2.92
387 388 1.398041 CACACATGTGGCAGTTATCGG 59.602 52.381 28.64 0.23 42.10 4.18
388 389 0.378257 CACATGTGGCAGTTATCGGC 59.622 55.000 18.51 0.00 0.00 5.54
389 390 1.089481 ACATGTGGCAGTTATCGGCG 61.089 55.000 0.00 0.00 35.70 6.46
390 391 1.089481 CATGTGGCAGTTATCGGCGT 61.089 55.000 6.85 0.00 35.70 5.68
391 392 0.810031 ATGTGGCAGTTATCGGCGTC 60.810 55.000 6.85 0.00 35.70 5.19
392 393 2.171725 GTGGCAGTTATCGGCGTCC 61.172 63.158 6.85 0.00 35.70 4.79
438 439 8.455682 AGTAGTCTTTTCACATTTTTCGTTTGA 58.544 29.630 0.00 0.00 0.00 2.69
515 516 2.110213 TGTGCGGGTGGACAGAAC 59.890 61.111 0.00 0.00 41.94 3.01
516 517 2.110213 GTGCGGGTGGACAGAACA 59.890 61.111 0.00 0.00 36.29 3.18
517 518 1.961277 GTGCGGGTGGACAGAACAG 60.961 63.158 0.00 0.00 36.29 3.16
518 519 2.358737 GCGGGTGGACAGAACAGG 60.359 66.667 0.00 0.00 0.00 4.00
519 520 2.347490 CGGGTGGACAGAACAGGG 59.653 66.667 0.00 0.00 0.00 4.45
520 521 2.214216 CGGGTGGACAGAACAGGGA 61.214 63.158 0.00 0.00 0.00 4.20
521 522 1.679898 GGGTGGACAGAACAGGGAG 59.320 63.158 0.00 0.00 0.00 4.30
522 523 0.836400 GGGTGGACAGAACAGGGAGA 60.836 60.000 0.00 0.00 0.00 3.71
523 524 0.610687 GGTGGACAGAACAGGGAGAG 59.389 60.000 0.00 0.00 0.00 3.20
524 525 1.343069 GTGGACAGAACAGGGAGAGT 58.657 55.000 0.00 0.00 0.00 3.24
541 542 3.840890 GAGTATCTGGTGCTATCGAGG 57.159 52.381 0.00 0.00 0.00 4.63
568 569 2.549926 TGCTACCGTGATACAAGCATG 58.450 47.619 0.00 0.00 38.22 4.06
569 570 1.261619 GCTACCGTGATACAAGCATGC 59.738 52.381 10.51 10.51 33.38 4.06
573 574 1.356624 GTGATACAAGCATGCGGGC 59.643 57.895 13.01 3.99 0.00 6.13
583 584 4.483243 ATGCGGGCCGTCGGATTT 62.483 61.111 28.82 1.65 37.96 2.17
594 595 2.793232 CCGTCGGATTTTTAGATCGGAC 59.207 50.000 4.91 12.69 45.45 4.79
596 597 2.793232 GTCGGATTTTTAGATCGGACGG 59.207 50.000 8.97 0.00 42.53 4.79
600 601 3.186613 GGATTTTTAGATCGGACGGCATC 59.813 47.826 0.00 0.00 0.00 3.91
603 604 0.673985 TTAGATCGGACGGCATCTGG 59.326 55.000 1.39 0.00 34.03 3.86
604 605 1.179174 TAGATCGGACGGCATCTGGG 61.179 60.000 1.39 0.00 34.03 4.45
606 607 2.427540 GATCGGACGGCATCTGGGAG 62.428 65.000 0.00 0.00 34.03 4.30
616 617 1.271597 GCATCTGGGAGTTGTTGGACT 60.272 52.381 0.00 0.00 0.00 3.85
625 626 0.531974 GTTGTTGGACTCGCTGGACA 60.532 55.000 0.00 0.00 0.00 4.02
630 631 0.678684 TGGACTCGCTGGACATACGA 60.679 55.000 0.00 0.00 0.00 3.43
646 647 4.156008 ACATACGAGCAATTTTTGGACTCC 59.844 41.667 0.00 0.00 0.00 3.85
650 651 3.253188 CGAGCAATTTTTGGACTCCTTGA 59.747 43.478 0.00 0.00 0.00 3.02
652 653 5.205759 AGCAATTTTTGGACTCCTTGAAG 57.794 39.130 0.00 0.00 0.00 3.02
654 655 4.309933 CAATTTTTGGACTCCTTGAAGGC 58.690 43.478 6.30 0.00 34.61 4.35
685 688 9.897744 TTTTTAATGTTGCAGAGTTATTGAGAG 57.102 29.630 0.00 0.00 0.00 3.20
696 699 1.687563 TATTGAGAGCCGTCCGATCA 58.312 50.000 0.00 0.00 0.00 2.92
710 713 0.577269 CGATCAGAAAATCCGACGGC 59.423 55.000 9.66 0.00 0.00 5.68
714 717 1.376812 AGAAAATCCGACGGCCCAC 60.377 57.895 9.66 0.00 0.00 4.61
720 723 2.406002 ATCCGACGGCCCACAAGTTT 62.406 55.000 9.66 0.00 0.00 2.66
721 724 2.637025 CGACGGCCCACAAGTTTG 59.363 61.111 0.00 0.00 0.00 2.93
732 735 4.066490 CCCACAAGTTTGTATCACGGTAA 58.934 43.478 0.00 0.00 39.91 2.85
742 745 5.314923 TGTATCACGGTAACACCTAAGAC 57.685 43.478 0.00 0.00 35.66 3.01
743 746 5.012239 TGTATCACGGTAACACCTAAGACT 58.988 41.667 0.00 0.00 35.66 3.24
744 747 5.477984 TGTATCACGGTAACACCTAAGACTT 59.522 40.000 0.00 0.00 35.66 3.01
745 748 4.247267 TCACGGTAACACCTAAGACTTG 57.753 45.455 0.00 0.00 35.66 3.16
746 749 3.006110 TCACGGTAACACCTAAGACTTGG 59.994 47.826 0.00 0.00 35.66 3.61
747 750 2.967887 ACGGTAACACCTAAGACTTGGT 59.032 45.455 0.00 0.85 35.66 3.67
748 751 4.022068 CACGGTAACACCTAAGACTTGGTA 60.022 45.833 8.44 0.00 35.66 3.25
749 752 4.219288 ACGGTAACACCTAAGACTTGGTAG 59.781 45.833 8.44 6.77 35.66 3.18
750 753 4.502016 GGTAACACCTAAGACTTGGTAGC 58.498 47.826 8.44 0.00 34.73 3.58
751 754 4.020839 GGTAACACCTAAGACTTGGTAGCA 60.021 45.833 8.44 0.00 34.73 3.49
752 755 4.910458 AACACCTAAGACTTGGTAGCAT 57.090 40.909 0.00 0.00 34.79 3.79
796 799 2.867472 CGGCACATGTCCGGTTTC 59.133 61.111 21.74 0.00 42.99 2.78
838 841 1.219393 GCCGGACCTCTTCCTCTTG 59.781 63.158 5.05 0.00 43.25 3.02
982 985 0.973496 GCTTCGTCTCCCTCCTCCTT 60.973 60.000 0.00 0.00 0.00 3.36
1235 1240 1.132453 GAGAATTAGCACGTTTGGGGC 59.868 52.381 0.00 0.00 0.00 5.80
1411 1416 1.002251 CTCGACAATCGCCTCTACTCC 60.002 57.143 0.00 0.00 40.21 3.85
1534 1539 3.070018 ACACTGAGCATCACAAAGCTAC 58.930 45.455 0.00 0.00 42.56 3.58
1635 1640 3.192541 TGCTTCAGAAGTACAAGCACA 57.807 42.857 12.18 0.00 45.91 4.57
1666 1671 3.568538 CATGTGTCTTTAGGTTTGCAGC 58.431 45.455 0.00 0.00 0.00 5.25
2066 2071 0.386113 GCGTGGCTCTACCTCCTTAG 59.614 60.000 0.00 0.00 40.22 2.18
2081 2086 4.202472 CCTCCTTAGAGTCACCAAAAGGTT 60.202 45.833 0.00 0.00 38.58 3.50
2433 2438 4.501559 TCCGAATACGATTGAAAACGCTAG 59.498 41.667 0.00 0.00 42.66 3.42
2465 2470 2.364002 GCCTAAAGGGTCAAGTTTGCAA 59.636 45.455 0.00 0.00 37.43 4.08
3644 3652 2.025321 ACAACTCCAGTCAACAAAGGGT 60.025 45.455 0.00 0.00 0.00 4.34
4369 4377 1.198759 ACACCCTACTCCGGCACATT 61.199 55.000 0.00 0.00 0.00 2.71
4454 4462 7.568199 ACAATCGAGTTTTTATGGGGAATAG 57.432 36.000 0.00 0.00 0.00 1.73
4913 4932 3.805971 CAGCTATGATTTGATGCTCGTCA 59.194 43.478 0.00 0.00 0.00 4.35
4925 4944 1.000163 TGCTCGTCAGGAGTTGAGAAC 60.000 52.381 0.00 0.00 45.03 3.01
5125 5147 3.001838 GTGTTGTGTCGTGAATGCTGTTA 59.998 43.478 0.00 0.00 0.00 2.41
5145 5167 6.123651 TGTTAAGTTTTAGTGGCCTTCTCAA 58.876 36.000 3.32 0.00 0.00 3.02
5254 5277 3.071312 TGTTTTAGCCGTAAGAAGGGACA 59.929 43.478 0.00 0.00 43.02 4.02
5271 5294 7.664731 AGAAGGGACAGATTTATGCATCAATAG 59.335 37.037 0.19 3.31 0.00 1.73
5310 5333 5.749588 CAGCTCTGTGATAGTTTCATCTCTG 59.250 44.000 0.00 0.00 36.54 3.35
5317 5340 4.713814 TGATAGTTTCATCTCTGTGCCTCT 59.286 41.667 0.00 0.00 0.00 3.69
5465 5488 4.130118 AGATGAGATTTTCATACACGGCC 58.870 43.478 0.00 0.00 46.51 6.13
5774 6119 5.416271 TTTCTTACCTCGCAACTATCCTT 57.584 39.130 0.00 0.00 0.00 3.36
5784 6129 6.316390 CCTCGCAACTATCCTTTATGAAAACT 59.684 38.462 0.00 0.00 0.00 2.66
5825 6170 8.156820 TGAGAGTTTTCATGAGGTAGAATTCAA 58.843 33.333 8.44 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.434330 CGACGAGCTAAAAACAAGTGGATC 60.434 45.833 0.00 0.00 0.00 3.36
1 2 3.432252 CGACGAGCTAAAAACAAGTGGAT 59.568 43.478 0.00 0.00 0.00 3.41
2 3 2.798283 CGACGAGCTAAAAACAAGTGGA 59.202 45.455 0.00 0.00 0.00 4.02
3 4 2.542595 ACGACGAGCTAAAAACAAGTGG 59.457 45.455 0.00 0.00 0.00 4.00
4 5 3.489785 AGACGACGAGCTAAAAACAAGTG 59.510 43.478 0.00 0.00 0.00 3.16
5 6 3.714391 AGACGACGAGCTAAAAACAAGT 58.286 40.909 0.00 0.00 0.00 3.16
6 7 4.446234 CAAGACGACGAGCTAAAAACAAG 58.554 43.478 0.00 0.00 0.00 3.16
7 8 3.246699 CCAAGACGACGAGCTAAAAACAA 59.753 43.478 0.00 0.00 0.00 2.83
8 9 2.798283 CCAAGACGACGAGCTAAAAACA 59.202 45.455 0.00 0.00 0.00 2.83
9 10 2.157085 CCCAAGACGACGAGCTAAAAAC 59.843 50.000 0.00 0.00 0.00 2.43
10 11 2.036217 TCCCAAGACGACGAGCTAAAAA 59.964 45.455 0.00 0.00 0.00 1.94
11 12 1.614903 TCCCAAGACGACGAGCTAAAA 59.385 47.619 0.00 0.00 0.00 1.52
12 13 1.201647 CTCCCAAGACGACGAGCTAAA 59.798 52.381 0.00 0.00 0.00 1.85
13 14 0.809385 CTCCCAAGACGACGAGCTAA 59.191 55.000 0.00 0.00 0.00 3.09
14 15 1.030488 CCTCCCAAGACGACGAGCTA 61.030 60.000 0.00 0.00 0.00 3.32
15 16 2.344203 CCTCCCAAGACGACGAGCT 61.344 63.158 0.00 0.00 0.00 4.09
16 17 2.182030 CCTCCCAAGACGACGAGC 59.818 66.667 0.00 0.00 0.00 5.03
17 18 1.977544 ACCCTCCCAAGACGACGAG 60.978 63.158 0.00 0.00 0.00 4.18
18 19 2.116772 ACCCTCCCAAGACGACGA 59.883 61.111 0.00 0.00 0.00 4.20
19 20 2.261671 CACCCTCCCAAGACGACG 59.738 66.667 0.00 0.00 0.00 5.12
20 21 2.663196 CCACCCTCCCAAGACGAC 59.337 66.667 0.00 0.00 0.00 4.34
21 22 2.606519 CCCACCCTCCCAAGACGA 60.607 66.667 0.00 0.00 0.00 4.20
22 23 3.717294 CCCCACCCTCCCAAGACG 61.717 72.222 0.00 0.00 0.00 4.18
23 24 2.160853 AACCCCACCCTCCCAAGAC 61.161 63.158 0.00 0.00 0.00 3.01
24 25 2.160171 CAACCCCACCCTCCCAAGA 61.160 63.158 0.00 0.00 0.00 3.02
25 26 2.440599 CAACCCCACCCTCCCAAG 59.559 66.667 0.00 0.00 0.00 3.61
26 27 3.189646 CCAACCCCACCCTCCCAA 61.190 66.667 0.00 0.00 0.00 4.12
27 28 4.209620 TCCAACCCCACCCTCCCA 62.210 66.667 0.00 0.00 0.00 4.37
28 29 3.339093 CTCCAACCCCACCCTCCC 61.339 72.222 0.00 0.00 0.00 4.30
29 30 3.339093 CCTCCAACCCCACCCTCC 61.339 72.222 0.00 0.00 0.00 4.30
30 31 3.339093 CCCTCCAACCCCACCCTC 61.339 72.222 0.00 0.00 0.00 4.30
64 65 4.419921 CGCTAACCACCCACCCCC 62.420 72.222 0.00 0.00 0.00 5.40
65 66 4.419921 CCGCTAACCACCCACCCC 62.420 72.222 0.00 0.00 0.00 4.95
66 67 3.643554 ACCGCTAACCACCCACCC 61.644 66.667 0.00 0.00 0.00 4.61
67 68 2.359478 CACCGCTAACCACCCACC 60.359 66.667 0.00 0.00 0.00 4.61
68 69 2.359478 CCACCGCTAACCACCCAC 60.359 66.667 0.00 0.00 0.00 4.61
69 70 3.642503 CCCACCGCTAACCACCCA 61.643 66.667 0.00 0.00 0.00 4.51
70 71 2.814913 CTTCCCACCGCTAACCACCC 62.815 65.000 0.00 0.00 0.00 4.61
71 72 1.376812 CTTCCCACCGCTAACCACC 60.377 63.158 0.00 0.00 0.00 4.61
72 73 1.376812 CCTTCCCACCGCTAACCAC 60.377 63.158 0.00 0.00 0.00 4.16
73 74 3.074281 CCTTCCCACCGCTAACCA 58.926 61.111 0.00 0.00 0.00 3.67
74 75 2.437895 GCCTTCCCACCGCTAACC 60.438 66.667 0.00 0.00 0.00 2.85
75 76 2.818274 CGCCTTCCCACCGCTAAC 60.818 66.667 0.00 0.00 0.00 2.34
76 77 4.770874 GCGCCTTCCCACCGCTAA 62.771 66.667 0.00 0.00 43.95 3.09
80 81 4.530857 CCTAGCGCCTTCCCACCG 62.531 72.222 2.29 0.00 0.00 4.94
81 82 4.176752 CCCTAGCGCCTTCCCACC 62.177 72.222 2.29 0.00 0.00 4.61
82 83 2.384653 GATCCCTAGCGCCTTCCCAC 62.385 65.000 2.29 0.00 0.00 4.61
83 84 2.040884 ATCCCTAGCGCCTTCCCA 60.041 61.111 2.29 0.00 0.00 4.37
84 85 1.839296 AGATCCCTAGCGCCTTCCC 60.839 63.158 2.29 0.00 0.00 3.97
85 86 1.369321 CAGATCCCTAGCGCCTTCC 59.631 63.158 2.29 0.00 0.00 3.46
86 87 1.301322 GCAGATCCCTAGCGCCTTC 60.301 63.158 2.29 0.00 0.00 3.46
87 88 1.341156 AAGCAGATCCCTAGCGCCTT 61.341 55.000 2.29 0.00 0.00 4.35
88 89 1.341156 AAAGCAGATCCCTAGCGCCT 61.341 55.000 2.29 0.00 0.00 5.52
89 90 1.147153 AAAGCAGATCCCTAGCGCC 59.853 57.895 2.29 0.00 0.00 6.53
90 91 1.162800 CCAAAGCAGATCCCTAGCGC 61.163 60.000 0.00 0.00 0.00 5.92
91 92 0.179000 ACCAAAGCAGATCCCTAGCG 59.821 55.000 0.00 0.00 0.00 4.26
92 93 2.019984 CAACCAAAGCAGATCCCTAGC 58.980 52.381 0.00 0.00 0.00 3.42
93 94 2.019984 GCAACCAAAGCAGATCCCTAG 58.980 52.381 0.00 0.00 0.00 3.02
94 95 1.340991 GGCAACCAAAGCAGATCCCTA 60.341 52.381 0.00 0.00 0.00 3.53
95 96 0.613012 GGCAACCAAAGCAGATCCCT 60.613 55.000 0.00 0.00 0.00 4.20
96 97 0.899717 TGGCAACCAAAGCAGATCCC 60.900 55.000 0.00 0.00 0.00 3.85
97 98 1.134907 CATGGCAACCAAAGCAGATCC 60.135 52.381 0.00 0.00 36.95 3.36
98 99 1.134907 CCATGGCAACCAAAGCAGATC 60.135 52.381 0.00 0.00 36.95 2.75
99 100 0.899720 CCATGGCAACCAAAGCAGAT 59.100 50.000 0.00 0.00 36.95 2.90
100 101 1.818959 GCCATGGCAACCAAAGCAGA 61.819 55.000 32.08 0.00 36.95 4.26
101 102 1.375013 GCCATGGCAACCAAAGCAG 60.375 57.895 32.08 0.00 36.95 4.24
102 103 2.742403 GCCATGGCAACCAAAGCA 59.258 55.556 32.08 0.00 36.95 3.91
112 113 1.318158 CCTTCTCTGGTTGCCATGGC 61.318 60.000 30.54 30.54 42.35 4.40
113 114 0.329261 TCCTTCTCTGGTTGCCATGG 59.671 55.000 7.63 7.63 30.82 3.66
114 115 2.089980 CTTCCTTCTCTGGTTGCCATG 58.910 52.381 0.00 0.00 30.82 3.66
115 116 1.005215 CCTTCCTTCTCTGGTTGCCAT 59.995 52.381 0.00 0.00 30.82 4.40
116 117 0.401738 CCTTCCTTCTCTGGTTGCCA 59.598 55.000 0.00 0.00 0.00 4.92
117 118 0.962855 GCCTTCCTTCTCTGGTTGCC 60.963 60.000 0.00 0.00 0.00 4.52
118 119 1.301677 CGCCTTCCTTCTCTGGTTGC 61.302 60.000 0.00 0.00 0.00 4.17
119 120 0.321671 TCGCCTTCCTTCTCTGGTTG 59.678 55.000 0.00 0.00 0.00 3.77
120 121 1.280457 ATCGCCTTCCTTCTCTGGTT 58.720 50.000 0.00 0.00 0.00 3.67
121 122 1.065854 CAATCGCCTTCCTTCTCTGGT 60.066 52.381 0.00 0.00 0.00 4.00
122 123 1.208052 TCAATCGCCTTCCTTCTCTGG 59.792 52.381 0.00 0.00 0.00 3.86
123 124 2.548875 CTCAATCGCCTTCCTTCTCTG 58.451 52.381 0.00 0.00 0.00 3.35
124 125 1.484240 CCTCAATCGCCTTCCTTCTCT 59.516 52.381 0.00 0.00 0.00 3.10
125 126 1.208293 ACCTCAATCGCCTTCCTTCTC 59.792 52.381 0.00 0.00 0.00 2.87
126 127 1.280457 ACCTCAATCGCCTTCCTTCT 58.720 50.000 0.00 0.00 0.00 2.85
127 128 2.483889 CCTACCTCAATCGCCTTCCTTC 60.484 54.545 0.00 0.00 0.00 3.46
128 129 1.486726 CCTACCTCAATCGCCTTCCTT 59.513 52.381 0.00 0.00 0.00 3.36
129 130 1.123928 CCTACCTCAATCGCCTTCCT 58.876 55.000 0.00 0.00 0.00 3.36
130 131 0.106894 CCCTACCTCAATCGCCTTCC 59.893 60.000 0.00 0.00 0.00 3.46
131 132 0.106894 CCCCTACCTCAATCGCCTTC 59.893 60.000 0.00 0.00 0.00 3.46
132 133 0.326238 TCCCCTACCTCAATCGCCTT 60.326 55.000 0.00 0.00 0.00 4.35
133 134 0.104934 ATCCCCTACCTCAATCGCCT 60.105 55.000 0.00 0.00 0.00 5.52
134 135 0.321996 GATCCCCTACCTCAATCGCC 59.678 60.000 0.00 0.00 0.00 5.54
135 136 0.038159 CGATCCCCTACCTCAATCGC 60.038 60.000 0.00 0.00 33.69 4.58
136 137 1.542030 CTCGATCCCCTACCTCAATCG 59.458 57.143 0.00 0.00 40.30 3.34
137 138 2.823154 CTCTCGATCCCCTACCTCAATC 59.177 54.545 0.00 0.00 0.00 2.67
138 139 2.491825 CCTCTCGATCCCCTACCTCAAT 60.492 54.545 0.00 0.00 0.00 2.57
139 140 1.133450 CCTCTCGATCCCCTACCTCAA 60.133 57.143 0.00 0.00 0.00 3.02
140 141 0.478942 CCTCTCGATCCCCTACCTCA 59.521 60.000 0.00 0.00 0.00 3.86
141 142 0.479378 ACCTCTCGATCCCCTACCTC 59.521 60.000 0.00 0.00 0.00 3.85
142 143 1.706305 CTACCTCTCGATCCCCTACCT 59.294 57.143 0.00 0.00 0.00 3.08
143 144 1.272037 CCTACCTCTCGATCCCCTACC 60.272 61.905 0.00 0.00 0.00 3.18
144 145 1.704070 TCCTACCTCTCGATCCCCTAC 59.296 57.143 0.00 0.00 0.00 3.18
145 146 1.986631 CTCCTACCTCTCGATCCCCTA 59.013 57.143 0.00 0.00 0.00 3.53
146 147 0.774908 CTCCTACCTCTCGATCCCCT 59.225 60.000 0.00 0.00 0.00 4.79
147 148 0.772384 TCTCCTACCTCTCGATCCCC 59.228 60.000 0.00 0.00 0.00 4.81
148 149 1.878948 CGTCTCCTACCTCTCGATCCC 60.879 61.905 0.00 0.00 0.00 3.85
149 150 1.070445 TCGTCTCCTACCTCTCGATCC 59.930 57.143 0.00 0.00 0.00 3.36
150 151 2.137523 GTCGTCTCCTACCTCTCGATC 58.862 57.143 0.00 0.00 0.00 3.69
151 152 1.538634 CGTCGTCTCCTACCTCTCGAT 60.539 57.143 0.00 0.00 0.00 3.59
152 153 0.179116 CGTCGTCTCCTACCTCTCGA 60.179 60.000 0.00 0.00 0.00 4.04
153 154 1.152989 CCGTCGTCTCCTACCTCTCG 61.153 65.000 0.00 0.00 0.00 4.04
154 155 1.438562 GCCGTCGTCTCCTACCTCTC 61.439 65.000 0.00 0.00 0.00 3.20
155 156 1.451747 GCCGTCGTCTCCTACCTCT 60.452 63.158 0.00 0.00 0.00 3.69
156 157 2.821688 CGCCGTCGTCTCCTACCTC 61.822 68.421 0.00 0.00 0.00 3.85
157 158 2.823147 CGCCGTCGTCTCCTACCT 60.823 66.667 0.00 0.00 0.00 3.08
158 159 2.821366 TCGCCGTCGTCTCCTACC 60.821 66.667 0.00 0.00 36.96 3.18
159 160 2.393768 TGTCGCCGTCGTCTCCTAC 61.394 63.158 0.00 0.00 36.96 3.18
160 161 2.046988 TGTCGCCGTCGTCTCCTA 60.047 61.111 0.00 0.00 36.96 2.94
161 162 3.735029 GTGTCGCCGTCGTCTCCT 61.735 66.667 0.00 0.00 36.96 3.69
163 164 4.380628 ACGTGTCGCCGTCGTCTC 62.381 66.667 0.00 0.00 35.95 3.36
164 165 4.380628 GACGTGTCGCCGTCGTCT 62.381 66.667 18.30 0.00 46.47 4.18
174 175 2.280823 GATCCCCAGACCGACGTGTC 62.281 65.000 0.00 0.00 35.43 3.67
175 176 2.283676 ATCCCCAGACCGACGTGT 60.284 61.111 0.00 0.00 0.00 4.49
176 177 2.494918 GATCCCCAGACCGACGTG 59.505 66.667 0.00 0.00 0.00 4.49
177 178 3.138798 CGATCCCCAGACCGACGT 61.139 66.667 0.00 0.00 0.00 4.34
178 179 1.940883 TTTCGATCCCCAGACCGACG 61.941 60.000 0.00 0.00 0.00 5.12
179 180 0.179108 CTTTCGATCCCCAGACCGAC 60.179 60.000 0.00 0.00 0.00 4.79
180 181 1.327690 CCTTTCGATCCCCAGACCGA 61.328 60.000 0.00 0.00 0.00 4.69
181 182 1.144057 CCTTTCGATCCCCAGACCG 59.856 63.158 0.00 0.00 0.00 4.79
182 183 0.466124 CTCCTTTCGATCCCCAGACC 59.534 60.000 0.00 0.00 0.00 3.85
183 184 0.466124 CCTCCTTTCGATCCCCAGAC 59.534 60.000 0.00 0.00 0.00 3.51
184 185 1.338136 GCCTCCTTTCGATCCCCAGA 61.338 60.000 0.00 0.00 0.00 3.86
185 186 1.147153 GCCTCCTTTCGATCCCCAG 59.853 63.158 0.00 0.00 0.00 4.45
186 187 2.375345 GGCCTCCTTTCGATCCCCA 61.375 63.158 0.00 0.00 0.00 4.96
187 188 2.511403 GGCCTCCTTTCGATCCCC 59.489 66.667 0.00 0.00 0.00 4.81
188 189 2.109181 CGGCCTCCTTTCGATCCC 59.891 66.667 0.00 0.00 0.00 3.85
189 190 2.109181 CCGGCCTCCTTTCGATCC 59.891 66.667 0.00 0.00 0.00 3.36
190 191 2.109181 CCCGGCCTCCTTTCGATC 59.891 66.667 0.00 0.00 0.00 3.69
191 192 2.365105 TCCCGGCCTCCTTTCGAT 60.365 61.111 0.00 0.00 0.00 3.59
192 193 3.387947 GTCCCGGCCTCCTTTCGA 61.388 66.667 0.00 0.00 0.00 3.71
193 194 4.814294 CGTCCCGGCCTCCTTTCG 62.814 72.222 0.00 0.00 0.00 3.46
194 195 3.387947 TCGTCCCGGCCTCCTTTC 61.388 66.667 0.00 0.00 0.00 2.62
195 196 3.703127 GTCGTCCCGGCCTCCTTT 61.703 66.667 0.00 0.00 0.00 3.11
196 197 4.698625 AGTCGTCCCGGCCTCCTT 62.699 66.667 0.00 0.00 28.67 3.36
240 241 4.974989 ACGTCCGGGCAAACGACC 62.975 66.667 19.01 0.00 41.29 4.79
241 242 3.708734 CACGTCCGGGCAAACGAC 61.709 66.667 19.01 0.00 41.29 4.34
242 243 4.973055 CCACGTCCGGGCAAACGA 62.973 66.667 19.01 0.00 41.29 3.85
251 252 4.770874 AAATCGCCCCCACGTCCG 62.771 66.667 0.00 0.00 0.00 4.79
252 253 2.360726 AAAATCGCCCCCACGTCC 60.361 61.111 0.00 0.00 0.00 4.79
253 254 2.874751 CAAAATCGCCCCCACGTC 59.125 61.111 0.00 0.00 0.00 4.34
254 255 3.370231 GCAAAATCGCCCCCACGT 61.370 61.111 0.00 0.00 0.00 4.49
262 263 1.729131 CGGTGTGTGGCAAAATCGC 60.729 57.895 0.00 0.00 0.00 4.58
263 264 0.309302 TTCGGTGTGTGGCAAAATCG 59.691 50.000 0.00 0.00 0.00 3.34
264 265 1.766069 GTTCGGTGTGTGGCAAAATC 58.234 50.000 0.00 0.00 0.00 2.17
265 266 0.030101 CGTTCGGTGTGTGGCAAAAT 59.970 50.000 0.00 0.00 0.00 1.82
266 267 1.306642 ACGTTCGGTGTGTGGCAAAA 61.307 50.000 0.00 0.00 0.00 2.44
267 268 1.745864 ACGTTCGGTGTGTGGCAAA 60.746 52.632 0.00 0.00 0.00 3.68
268 269 2.125065 ACGTTCGGTGTGTGGCAA 60.125 55.556 0.00 0.00 0.00 4.52
269 270 2.892914 CACGTTCGGTGTGTGGCA 60.893 61.111 0.00 0.00 41.89 4.92
280 281 3.712881 GTCACAGCCCGCACGTTC 61.713 66.667 0.00 0.00 0.00 3.95
281 282 4.235762 AGTCACAGCCCGCACGTT 62.236 61.111 0.00 0.00 0.00 3.99
282 283 4.969196 CAGTCACAGCCCGCACGT 62.969 66.667 0.00 0.00 0.00 4.49
283 284 4.969196 ACAGTCACAGCCCGCACG 62.969 66.667 0.00 0.00 0.00 5.34
284 285 3.349006 CACAGTCACAGCCCGCAC 61.349 66.667 0.00 0.00 0.00 5.34
333 334 2.551912 CCCTGTGTGGCACGGAAAC 61.552 63.158 13.77 6.00 42.79 2.78
334 335 2.203280 CCCTGTGTGGCACGGAAA 60.203 61.111 13.77 0.00 42.79 3.13
346 347 4.402528 TATTGCCGCACGCCCTGT 62.403 61.111 0.00 0.00 36.24 4.00
347 348 3.876198 GTATTGCCGCACGCCCTG 61.876 66.667 0.00 0.00 36.24 4.45
348 349 4.402528 TGTATTGCCGCACGCCCT 62.403 61.111 0.00 0.00 36.24 5.19
349 350 4.174129 GTGTATTGCCGCACGCCC 62.174 66.667 0.00 0.00 36.24 6.13
350 351 4.174129 GGTGTATTGCCGCACGCC 62.174 66.667 0.00 0.00 38.09 5.68
351 352 3.427425 TGGTGTATTGCCGCACGC 61.427 61.111 0.00 0.00 36.54 5.34
352 353 2.321333 TGTGGTGTATTGCCGCACG 61.321 57.895 0.00 0.00 41.07 5.34
353 354 3.661911 TGTGGTGTATTGCCGCAC 58.338 55.556 0.00 0.00 41.07 5.34
354 355 0.607762 ATGTGTGGTGTATTGCCGCA 60.608 50.000 0.00 0.00 43.38 5.69
355 356 0.179166 CATGTGTGGTGTATTGCCGC 60.179 55.000 0.00 0.00 37.06 6.53
356 357 1.135717 CACATGTGTGGTGTATTGCCG 60.136 52.381 18.03 0.00 42.10 5.69
357 358 2.634982 CACATGTGTGGTGTATTGCC 57.365 50.000 18.03 0.00 42.10 4.52
367 368 1.398041 CCGATAACTGCCACATGTGTG 59.602 52.381 23.79 15.96 45.23 3.82
368 369 1.737838 CCGATAACTGCCACATGTGT 58.262 50.000 23.79 8.06 0.00 3.72
369 370 0.378257 GCCGATAACTGCCACATGTG 59.622 55.000 19.31 19.31 0.00 3.21
370 371 1.089481 CGCCGATAACTGCCACATGT 61.089 55.000 0.00 0.00 0.00 3.21
371 372 1.089481 ACGCCGATAACTGCCACATG 61.089 55.000 0.00 0.00 0.00 3.21
372 373 0.810031 GACGCCGATAACTGCCACAT 60.810 55.000 0.00 0.00 0.00 3.21
373 374 1.447140 GACGCCGATAACTGCCACA 60.447 57.895 0.00 0.00 0.00 4.17
374 375 2.171725 GGACGCCGATAACTGCCAC 61.172 63.158 0.00 0.00 0.00 5.01
375 376 1.895020 AAGGACGCCGATAACTGCCA 61.895 55.000 0.00 0.00 0.00 4.92
376 377 0.743345 AAAGGACGCCGATAACTGCC 60.743 55.000 0.00 0.00 0.00 4.85
377 378 0.651031 GAAAGGACGCCGATAACTGC 59.349 55.000 0.00 0.00 0.00 4.40
378 379 2.295253 AGAAAGGACGCCGATAACTG 57.705 50.000 0.00 0.00 0.00 3.16
379 380 3.329929 AAAGAAAGGACGCCGATAACT 57.670 42.857 0.00 0.00 0.00 2.24
380 381 5.499047 CAATAAAGAAAGGACGCCGATAAC 58.501 41.667 0.00 0.00 0.00 1.89
381 382 4.573201 CCAATAAAGAAAGGACGCCGATAA 59.427 41.667 0.00 0.00 0.00 1.75
382 383 4.124238 CCAATAAAGAAAGGACGCCGATA 58.876 43.478 0.00 0.00 0.00 2.92
383 384 2.943033 CCAATAAAGAAAGGACGCCGAT 59.057 45.455 0.00 0.00 0.00 4.18
384 385 2.352388 CCAATAAAGAAAGGACGCCGA 58.648 47.619 0.00 0.00 0.00 5.54
385 386 1.400494 CCCAATAAAGAAAGGACGCCG 59.600 52.381 0.00 0.00 0.00 6.46
386 387 1.749063 CCCCAATAAAGAAAGGACGCC 59.251 52.381 0.00 0.00 0.00 5.68
387 388 1.749063 CCCCCAATAAAGAAAGGACGC 59.251 52.381 0.00 0.00 0.00 5.19
388 389 3.279434 CTCCCCCAATAAAGAAAGGACG 58.721 50.000 0.00 0.00 0.00 4.79
389 390 4.317530 ACTCCCCCAATAAAGAAAGGAC 57.682 45.455 0.00 0.00 0.00 3.85
390 391 5.554350 ACTTACTCCCCCAATAAAGAAAGGA 59.446 40.000 0.00 0.00 0.00 3.36
391 392 5.827756 ACTTACTCCCCCAATAAAGAAAGG 58.172 41.667 0.00 0.00 0.00 3.11
392 393 7.631007 ACTACTTACTCCCCCAATAAAGAAAG 58.369 38.462 0.00 0.00 0.00 2.62
438 439 5.337894 GCAGGCCTCACTCATGTATATGTAT 60.338 44.000 0.00 0.00 35.73 2.29
469 470 4.142425 GGTCCGGTTTGTGAAAGTAAAACA 60.142 41.667 0.00 0.00 35.88 2.83
508 509 3.383185 CCAGATACTCTCCCTGTTCTGTC 59.617 52.174 0.00 0.00 30.97 3.51
513 514 1.834263 GCACCAGATACTCTCCCTGTT 59.166 52.381 0.00 0.00 0.00 3.16
515 516 1.786937 AGCACCAGATACTCTCCCTG 58.213 55.000 0.00 0.00 0.00 4.45
516 517 3.773560 GATAGCACCAGATACTCTCCCT 58.226 50.000 0.00 0.00 0.00 4.20
517 518 2.490115 CGATAGCACCAGATACTCTCCC 59.510 54.545 0.00 0.00 0.00 4.30
518 519 3.413327 TCGATAGCACCAGATACTCTCC 58.587 50.000 0.00 0.00 0.00 3.71
519 520 3.438781 CCTCGATAGCACCAGATACTCTC 59.561 52.174 0.00 0.00 0.00 3.20
520 521 3.417101 CCTCGATAGCACCAGATACTCT 58.583 50.000 0.00 0.00 0.00 3.24
521 522 2.094957 GCCTCGATAGCACCAGATACTC 60.095 54.545 2.88 0.00 0.00 2.59
522 523 1.889829 GCCTCGATAGCACCAGATACT 59.110 52.381 2.88 0.00 0.00 2.12
523 524 1.889829 AGCCTCGATAGCACCAGATAC 59.110 52.381 9.92 0.00 0.00 2.24
524 525 2.294449 AGCCTCGATAGCACCAGATA 57.706 50.000 9.92 0.00 0.00 1.98
536 537 1.479323 ACGGTAGCATTTAAGCCTCGA 59.521 47.619 0.00 0.00 34.23 4.04
541 542 5.728351 TTGTATCACGGTAGCATTTAAGC 57.272 39.130 0.00 0.00 0.00 3.09
568 569 2.043676 CTAAAAATCCGACGGCCCGC 62.044 60.000 9.66 0.00 0.00 6.13
569 570 0.460635 TCTAAAAATCCGACGGCCCG 60.461 55.000 9.66 0.00 0.00 6.13
573 574 2.793232 GTCCGATCTAAAAATCCGACGG 59.207 50.000 7.84 7.84 40.36 4.79
583 584 1.068588 CCAGATGCCGTCCGATCTAAA 59.931 52.381 0.00 0.00 0.00 1.85
594 595 1.308069 CCAACAACTCCCAGATGCCG 61.308 60.000 0.00 0.00 0.00 5.69
596 597 1.168714 GTCCAACAACTCCCAGATGC 58.831 55.000 0.00 0.00 0.00 3.91
600 601 0.951040 GCGAGTCCAACAACTCCCAG 60.951 60.000 0.00 0.00 42.23 4.45
603 604 0.951040 CCAGCGAGTCCAACAACTCC 60.951 60.000 0.00 0.00 42.23 3.85
604 605 0.033504 TCCAGCGAGTCCAACAACTC 59.966 55.000 0.00 0.00 41.88 3.01
606 607 0.531974 TGTCCAGCGAGTCCAACAAC 60.532 55.000 0.00 0.00 0.00 3.32
616 617 0.459899 ATTGCTCGTATGTCCAGCGA 59.540 50.000 0.00 0.00 35.81 4.93
625 626 4.589908 AGGAGTCCAAAAATTGCTCGTAT 58.410 39.130 12.86 0.00 0.00 3.06
630 631 4.039609 CCTTCAAGGAGTCCAAAAATTGCT 59.960 41.667 12.86 0.00 37.67 3.91
663 664 5.586243 GGCTCTCAATAACTCTGCAACATTA 59.414 40.000 0.00 0.00 0.00 1.90
667 670 2.349886 CGGCTCTCAATAACTCTGCAAC 59.650 50.000 0.00 0.00 0.00 4.17
677 680 1.609072 CTGATCGGACGGCTCTCAATA 59.391 52.381 0.00 0.00 0.00 1.90
685 688 0.938008 GGATTTTCTGATCGGACGGC 59.062 55.000 2.94 0.00 0.00 5.68
696 699 1.376812 GTGGGCCGTCGGATTTTCT 60.377 57.895 17.49 0.00 0.00 2.52
710 713 2.500229 ACCGTGATACAAACTTGTGGG 58.500 47.619 5.34 2.21 42.31 4.61
714 717 4.753107 AGGTGTTACCGTGATACAAACTTG 59.247 41.667 0.00 0.00 44.90 3.16
720 723 5.012239 AGTCTTAGGTGTTACCGTGATACA 58.988 41.667 0.00 0.00 44.90 2.29
721 724 5.573337 AGTCTTAGGTGTTACCGTGATAC 57.427 43.478 0.00 0.00 44.90 2.24
732 735 4.910458 AATGCTACCAAGTCTTAGGTGT 57.090 40.909 13.77 1.01 38.87 4.16
742 745 6.149474 CCGGGAAAATATCTAATGCTACCAAG 59.851 42.308 0.00 0.00 0.00 3.61
743 746 6.001460 CCGGGAAAATATCTAATGCTACCAA 58.999 40.000 0.00 0.00 0.00 3.67
744 747 5.308497 TCCGGGAAAATATCTAATGCTACCA 59.692 40.000 0.00 0.00 0.00 3.25
745 748 5.642491 GTCCGGGAAAATATCTAATGCTACC 59.358 44.000 0.00 0.00 0.00 3.18
746 749 6.228258 TGTCCGGGAAAATATCTAATGCTAC 58.772 40.000 0.00 0.00 0.00 3.58
747 750 6.269077 TCTGTCCGGGAAAATATCTAATGCTA 59.731 38.462 0.00 0.00 0.00 3.49
748 751 5.071788 TCTGTCCGGGAAAATATCTAATGCT 59.928 40.000 0.00 0.00 0.00 3.79
749 752 5.305585 TCTGTCCGGGAAAATATCTAATGC 58.694 41.667 0.00 0.00 0.00 3.56
750 753 6.765989 TGTTCTGTCCGGGAAAATATCTAATG 59.234 38.462 0.00 0.00 0.00 1.90
751 754 6.895782 TGTTCTGTCCGGGAAAATATCTAAT 58.104 36.000 0.00 0.00 0.00 1.73
752 755 6.302535 TGTTCTGTCCGGGAAAATATCTAA 57.697 37.500 0.00 0.00 0.00 2.10
796 799 1.461127 GCTAATCATCGCGGGCTTTAG 59.539 52.381 6.13 10.41 0.00 1.85
838 841 1.136984 CTGGTGAGTACGCGAGACC 59.863 63.158 15.93 11.29 35.01 3.85
982 985 2.361104 GTTCCGGCAGATTGGGCA 60.361 61.111 0.00 0.00 0.00 5.36
1187 1192 2.395360 GCCACAATTACGCGCTCCA 61.395 57.895 5.73 0.00 0.00 3.86
1411 1416 7.609760 TTACCACACATAATCTGTTAGCAAG 57.390 36.000 0.00 0.00 35.29 4.01
1534 1539 4.008074 AGACACCCATGTGACTGTAAAG 57.992 45.455 0.00 0.00 44.07 1.85
2433 2438 1.749258 CTTTAGGCCCCGCTTGGAC 60.749 63.158 0.00 0.00 35.39 4.02
2716 2724 3.436906 CCCATTGCCCTGAAGGATTGATA 60.437 47.826 0.00 0.00 38.24 2.15
3644 3652 3.824443 CTGGATATTGAATGGCATGCTCA 59.176 43.478 18.92 14.25 0.00 4.26
4201 4209 4.887071 CCACTGCCATTAACCTATAAGCAA 59.113 41.667 0.00 0.00 0.00 3.91
4369 4377 8.999431 GGTTTGTTGTCATTATTCTCAAGAGTA 58.001 33.333 0.00 0.00 0.00 2.59
4454 4462 7.610305 TGGTTAACATATCCTCTCCTTTTCAAC 59.390 37.037 8.10 0.00 0.00 3.18
4913 4932 4.417426 TCTTTTTCCGTTCTCAACTCCT 57.583 40.909 0.00 0.00 0.00 3.69
4925 4944 1.663643 TCGAATCGGCATCTTTTTCCG 59.336 47.619 1.76 0.00 44.16 4.30
5125 5147 4.793201 AGTTGAGAAGGCCACTAAAACTT 58.207 39.130 5.01 0.00 0.00 2.66
5145 5167 5.550403 TGATAGAGGGTAAACCAAAAGGAGT 59.450 40.000 0.81 0.00 43.89 3.85
5271 5294 5.178996 CACAGAGCTGTAGATTATGGAATGC 59.821 44.000 2.36 0.00 42.83 3.56
5310 5333 6.820656 TGAGAATGAGAAAAGATAAGAGGCAC 59.179 38.462 0.00 0.00 0.00 5.01
5576 5599 4.267690 TCGCAATTAATCGAGATGTGTGTC 59.732 41.667 0.00 0.00 0.00 3.67



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.