Multiple sequence alignment - TraesCS7D01G285000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7D01G285000
chr7D
100.000
5862
0
0
1
5862
306462826
306456965
0.000000e+00
10826.0
1
TraesCS7D01G285000
chr7D
88.206
407
29
5
1
396
150586165
150585767
8.890000e-128
468.0
2
TraesCS7D01G285000
chr7D
86.453
406
38
8
1
393
414309223
414309624
4.200000e-116
429.0
3
TraesCS7D01G285000
chr7D
91.566
83
5
2
4078
4159
306458668
306458749
4.800000e-21
113.0
4
TraesCS7D01G285000
chr7D
100.000
50
0
0
2542
2591
306460236
306460285
6.250000e-15
93.5
5
TraesCS7D01G285000
chr7D
90.244
41
3
1
2562
2601
47416188
47416228
1.100000e-02
52.8
6
TraesCS7D01G285000
chr7D
88.636
44
3
2
2551
2593
576360508
576360550
1.100000e-02
52.8
7
TraesCS7D01G285000
chr7A
97.190
5480
117
18
394
5862
359048497
359053950
0.000000e+00
9232.0
8
TraesCS7D01G285000
chr7A
91.566
83
5
2
4078
4159
359052251
359052170
4.800000e-21
113.0
9
TraesCS7D01G285000
chr7B
97.197
4495
82
14
767
5245
282328832
282333298
0.000000e+00
7563.0
10
TraesCS7D01G285000
chr7B
97.059
340
10
0
5396
5735
282333335
282333674
1.830000e-159
573.0
11
TraesCS7D01G285000
chr7B
95.161
124
6
0
394
517
282328718
282328841
4.630000e-46
196.0
12
TraesCS7D01G285000
chr7B
91.566
83
5
2
4078
4159
282332205
282332124
4.800000e-21
113.0
13
TraesCS7D01G285000
chr7B
94.118
68
2
1
5795
5862
282334037
282334102
1.040000e-17
102.0
14
TraesCS7D01G285000
chr7B
98.039
51
1
0
2542
2592
282330653
282330603
8.090000e-14
89.8
15
TraesCS7D01G285000
chr7B
100.000
33
0
0
362
394
377816544
377816512
1.760000e-05
62.1
16
TraesCS7D01G285000
chr7B
100.000
30
0
0
5325
5354
282333299
282333328
8.210000e-04
56.5
17
TraesCS7D01G285000
chrUn
91.908
346
18
1
64
399
97052423
97052078
5.320000e-130
475.0
18
TraesCS7D01G285000
chr4D
86.946
406
38
6
2
394
64225792
64226195
5.390000e-120
442.0
19
TraesCS7D01G285000
chr6D
86.553
409
40
6
4
400
55668408
55668813
2.510000e-118
436.0
20
TraesCS7D01G285000
chr6D
86.275
408
40
7
1
395
340953664
340953260
4.200000e-116
429.0
21
TraesCS7D01G285000
chr6D
86.453
406
36
9
1
393
383561880
383561481
1.510000e-115
427.0
22
TraesCS7D01G285000
chr6D
87.368
95
4
8
4079
4170
309955221
309955310
1.040000e-17
102.0
23
TraesCS7D01G285000
chr2D
88.462
364
37
5
1
361
325744250
325744611
9.020000e-118
435.0
24
TraesCS7D01G285000
chr2D
86.056
251
28
5
5617
5862
114519849
114519601
4.500000e-66
263.0
25
TraesCS7D01G285000
chr2D
93.220
59
4
0
5469
5527
114520021
114520079
2.910000e-13
87.9
26
TraesCS7D01G285000
chr4A
86.241
407
41
10
1
393
440200319
440199914
1.510000e-115
427.0
27
TraesCS7D01G285000
chr4A
78.816
321
47
13
94
402
516644066
516643755
4.630000e-46
196.0
28
TraesCS7D01G285000
chr1D
88.154
363
37
5
1
361
234862160
234861802
1.510000e-115
427.0
29
TraesCS7D01G285000
chr1D
80.800
250
34
7
5617
5862
160423151
160422912
3.610000e-42
183.0
30
TraesCS7D01G285000
chr2B
82.521
349
38
9
57
394
722514850
722514514
9.610000e-73
285.0
31
TraesCS7D01G285000
chr2B
87.200
250
26
4
5617
5862
164903516
164903269
4.470000e-71
279.0
32
TraesCS7D01G285000
chr2B
92.683
82
1
5
4079
4157
693753288
693753367
4.800000e-21
113.0
33
TraesCS7D01G285000
chr2B
94.915
59
3
0
5469
5527
164903695
164903753
6.250000e-15
93.5
34
TraesCS7D01G285000
chr2A
87.600
250
24
5
5617
5862
115715437
115715191
3.460000e-72
283.0
35
TraesCS7D01G285000
chr2A
96.970
33
1
0
2565
2597
156370826
156370794
8.210000e-04
56.5
36
TraesCS7D01G285000
chr5B
82.283
254
35
6
522
767
295070128
295070379
1.660000e-50
211.0
37
TraesCS7D01G285000
chr5B
92.308
78
4
2
4080
4157
355601227
355601152
6.210000e-20
110.0
38
TraesCS7D01G285000
chr3B
80.827
266
30
9
163
417
336825659
336825404
7.750000e-44
189.0
39
TraesCS7D01G285000
chr3B
92.157
51
4
0
518
568
787836076
787836026
8.150000e-09
73.1
40
TraesCS7D01G285000
chr3B
100.000
34
0
0
361
394
572683107
572683074
4.900000e-06
63.9
41
TraesCS7D01G285000
chr3A
93.827
81
1
4
4081
4159
430526505
430526427
1.030000e-22
119.0
42
TraesCS7D01G285000
chr3A
100.000
30
0
0
367
396
648534568
648534597
8.210000e-04
56.5
43
TraesCS7D01G285000
chr5D
77.512
209
25
7
206
394
520085454
520085248
8.030000e-19
106.0
44
TraesCS7D01G285000
chr6A
89.286
56
0
1
2542
2597
529567064
529567113
1.360000e-06
65.8
45
TraesCS7D01G285000
chr5A
94.737
38
1
1
2565
2601
382114886
382114849
2.280000e-04
58.4
46
TraesCS7D01G285000
chr3D
96.970
33
1
0
361
393
132922086
132922118
8.210000e-04
56.5
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7D01G285000
chr7D
306456965
306462826
5861
True
10826.0
10826
100.000
1
5862
1
chr7D.!!$R2
5861
1
TraesCS7D01G285000
chr7A
359048497
359053950
5453
False
9232.0
9232
97.190
394
5862
1
chr7A.!!$F1
5468
2
TraesCS7D01G285000
chr7B
282328718
282334102
5384
False
1698.1
7563
96.707
394
5862
5
chr7B.!!$F1
5468
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
284
285
0.030101
ATTTTGCCACACACCGAACG
59.970
50.000
0.00
0.0
0.00
3.95
F
374
375
0.179166
GCGGCAATACACCACACATG
60.179
55.000
0.00
0.0
0.00
3.21
F
388
389
0.378257
CACATGTGGCAGTTATCGGC
59.622
55.000
18.51
0.0
0.00
5.54
F
2066
2071
0.386113
GCGTGGCTCTACCTCCTTAG
59.614
60.000
0.00
0.0
40.22
2.18
F
2465
2470
2.364002
GCCTAAAGGGTCAAGTTTGCAA
59.636
45.455
0.00
0.0
37.43
4.08
F
3644
3652
2.025321
ACAACTCCAGTCAACAAAGGGT
60.025
45.455
0.00
0.0
0.00
4.34
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1187
1192
2.395360
GCCACAATTACGCGCTCCA
61.395
57.895
5.73
0.00
0.00
3.86
R
1534
1539
4.008074
AGACACCCATGTGACTGTAAAG
57.992
45.455
0.00
0.00
44.07
1.85
R
2433
2438
1.749258
CTTTAGGCCCCGCTTGGAC
60.749
63.158
0.00
0.00
35.39
4.02
R
3644
3652
3.824443
CTGGATATTGAATGGCATGCTCA
59.176
43.478
18.92
14.25
0.00
4.26
R
4201
4209
4.887071
CCACTGCCATTAACCTATAAGCAA
59.113
41.667
0.00
0.00
0.00
3.91
R
4925
4944
1.663643
TCGAATCGGCATCTTTTTCCG
59.336
47.619
1.76
0.00
44.16
4.30
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
22
23
4.959149
GATCCACTTGTTTTTAGCTCGTC
58.041
43.478
0.00
0.00
0.00
4.20
23
24
2.798283
TCCACTTGTTTTTAGCTCGTCG
59.202
45.455
0.00
0.00
0.00
5.12
24
25
2.542595
CCACTTGTTTTTAGCTCGTCGT
59.457
45.455
0.00
0.00
0.00
4.34
25
26
3.362693
CCACTTGTTTTTAGCTCGTCGTC
60.363
47.826
0.00
0.00
0.00
4.20
26
27
3.489785
CACTTGTTTTTAGCTCGTCGTCT
59.510
43.478
0.00
0.00
0.00
4.18
27
28
4.025979
CACTTGTTTTTAGCTCGTCGTCTT
60.026
41.667
0.00
0.00
0.00
3.01
28
29
4.025979
ACTTGTTTTTAGCTCGTCGTCTTG
60.026
41.667
0.00
0.00
0.00
3.02
29
30
2.798283
TGTTTTTAGCTCGTCGTCTTGG
59.202
45.455
0.00
0.00
0.00
3.61
30
31
2.074547
TTTTAGCTCGTCGTCTTGGG
57.925
50.000
0.00
0.00
0.00
4.12
31
32
1.250328
TTTAGCTCGTCGTCTTGGGA
58.750
50.000
0.00
0.00
0.00
4.37
32
33
0.809385
TTAGCTCGTCGTCTTGGGAG
59.191
55.000
0.00
0.00
0.00
4.30
33
34
1.030488
TAGCTCGTCGTCTTGGGAGG
61.030
60.000
0.00
0.00
0.00
4.30
34
35
2.885861
CTCGTCGTCTTGGGAGGG
59.114
66.667
0.00
0.00
0.00
4.30
35
36
1.977544
CTCGTCGTCTTGGGAGGGT
60.978
63.158
0.00
0.00
0.00
4.34
36
37
2.214181
CTCGTCGTCTTGGGAGGGTG
62.214
65.000
0.00
0.00
0.00
4.61
37
38
2.663196
GTCGTCTTGGGAGGGTGG
59.337
66.667
0.00
0.00
0.00
4.61
38
39
2.606519
TCGTCTTGGGAGGGTGGG
60.607
66.667
0.00
0.00
0.00
4.61
39
40
3.717294
CGTCTTGGGAGGGTGGGG
61.717
72.222
0.00
0.00
0.00
4.96
40
41
2.531942
GTCTTGGGAGGGTGGGGT
60.532
66.667
0.00
0.00
0.00
4.95
41
42
2.160853
GTCTTGGGAGGGTGGGGTT
61.161
63.158
0.00
0.00
0.00
4.11
42
43
2.160171
TCTTGGGAGGGTGGGGTTG
61.160
63.158
0.00
0.00
0.00
3.77
43
44
3.189646
TTGGGAGGGTGGGGTTGG
61.190
66.667
0.00
0.00
0.00
3.77
44
45
3.759073
TTGGGAGGGTGGGGTTGGA
62.759
63.158
0.00
0.00
0.00
3.53
45
46
3.339093
GGGAGGGTGGGGTTGGAG
61.339
72.222
0.00
0.00
0.00
3.86
46
47
3.339093
GGAGGGTGGGGTTGGAGG
61.339
72.222
0.00
0.00
0.00
4.30
47
48
3.339093
GAGGGTGGGGTTGGAGGG
61.339
72.222
0.00
0.00
0.00
4.30
81
82
4.419921
GGGGGTGGGTGGTTAGCG
62.420
72.222
0.00
0.00
0.00
4.26
82
83
4.419921
GGGGTGGGTGGTTAGCGG
62.420
72.222
0.00
0.00
0.00
5.52
83
84
3.643554
GGGTGGGTGGTTAGCGGT
61.644
66.667
0.00
0.00
0.00
5.68
84
85
2.359478
GGTGGGTGGTTAGCGGTG
60.359
66.667
0.00
0.00
0.00
4.94
85
86
2.359478
GTGGGTGGTTAGCGGTGG
60.359
66.667
0.00
0.00
0.00
4.61
86
87
3.642503
TGGGTGGTTAGCGGTGGG
61.643
66.667
0.00
0.00
0.00
4.61
87
88
3.324108
GGGTGGTTAGCGGTGGGA
61.324
66.667
0.00
0.00
0.00
4.37
88
89
2.751688
GGTGGTTAGCGGTGGGAA
59.248
61.111
0.00
0.00
0.00
3.97
89
90
1.376812
GGTGGTTAGCGGTGGGAAG
60.377
63.158
0.00
0.00
0.00
3.46
90
91
1.376812
GTGGTTAGCGGTGGGAAGG
60.377
63.158
0.00
0.00
0.00
3.46
91
92
2.437895
GGTTAGCGGTGGGAAGGC
60.438
66.667
0.00
0.00
0.00
4.35
92
93
2.818274
GTTAGCGGTGGGAAGGCG
60.818
66.667
0.00
0.00
0.00
5.52
93
94
4.770874
TTAGCGGTGGGAAGGCGC
62.771
66.667
0.00
0.00
0.00
6.53
97
98
4.530857
CGGTGGGAAGGCGCTAGG
62.531
72.222
7.64
0.00
0.00
3.02
98
99
4.176752
GGTGGGAAGGCGCTAGGG
62.177
72.222
7.64
1.65
0.00
3.53
99
100
3.081409
GTGGGAAGGCGCTAGGGA
61.081
66.667
11.61
0.00
0.00
4.20
100
101
2.040884
TGGGAAGGCGCTAGGGAT
60.041
61.111
11.61
0.00
0.00
3.85
101
102
2.140792
TGGGAAGGCGCTAGGGATC
61.141
63.158
11.61
5.18
0.00
3.36
102
103
1.839296
GGGAAGGCGCTAGGGATCT
60.839
63.158
11.61
4.19
0.00
2.75
103
104
1.369321
GGAAGGCGCTAGGGATCTG
59.631
63.158
11.61
0.00
0.00
2.90
104
105
1.301322
GAAGGCGCTAGGGATCTGC
60.301
63.158
11.61
2.04
0.00
4.26
105
106
1.753368
GAAGGCGCTAGGGATCTGCT
61.753
60.000
11.61
0.00
0.00
4.24
106
107
1.341156
AAGGCGCTAGGGATCTGCTT
61.341
55.000
11.61
0.00
0.00
3.91
107
108
1.147153
GGCGCTAGGGATCTGCTTT
59.853
57.895
11.61
0.00
0.00
3.51
108
109
1.162800
GGCGCTAGGGATCTGCTTTG
61.163
60.000
11.61
0.00
0.00
2.77
109
110
1.162800
GCGCTAGGGATCTGCTTTGG
61.163
60.000
11.61
0.00
0.00
3.28
110
111
0.179000
CGCTAGGGATCTGCTTTGGT
59.821
55.000
0.00
0.00
0.00
3.67
111
112
1.407437
CGCTAGGGATCTGCTTTGGTT
60.407
52.381
0.00
0.00
0.00
3.67
112
113
2.019984
GCTAGGGATCTGCTTTGGTTG
58.980
52.381
0.00
0.00
0.00
3.77
113
114
2.019984
CTAGGGATCTGCTTTGGTTGC
58.980
52.381
0.00
0.00
0.00
4.17
114
115
0.613012
AGGGATCTGCTTTGGTTGCC
60.613
55.000
0.00
0.00
0.00
4.52
115
116
0.899717
GGGATCTGCTTTGGTTGCCA
60.900
55.000
0.00
0.00
0.00
4.92
116
117
1.188863
GGATCTGCTTTGGTTGCCAT
58.811
50.000
0.00
0.00
31.53
4.40
117
118
1.134907
GGATCTGCTTTGGTTGCCATG
60.135
52.381
0.00
0.00
31.53
3.66
118
119
0.899720
ATCTGCTTTGGTTGCCATGG
59.100
50.000
7.63
7.63
31.53
3.66
119
120
1.375013
CTGCTTTGGTTGCCATGGC
60.375
57.895
30.54
30.54
42.35
4.40
129
130
4.421365
GCCATGGCAACCAGAGAA
57.579
55.556
32.08
0.00
36.75
2.87
130
131
2.187073
GCCATGGCAACCAGAGAAG
58.813
57.895
32.08
0.00
36.75
2.85
131
132
1.318158
GCCATGGCAACCAGAGAAGG
61.318
60.000
32.08
0.00
36.75
3.46
132
133
0.329261
CCATGGCAACCAGAGAAGGA
59.671
55.000
0.00
0.00
36.75
3.36
133
134
1.272092
CCATGGCAACCAGAGAAGGAA
60.272
52.381
0.00
0.00
36.75
3.36
134
135
2.089980
CATGGCAACCAGAGAAGGAAG
58.910
52.381
0.00
0.00
36.75
3.46
135
136
0.401738
TGGCAACCAGAGAAGGAAGG
59.598
55.000
0.00
0.00
0.00
3.46
136
137
0.962855
GGCAACCAGAGAAGGAAGGC
60.963
60.000
0.00
0.00
0.00
4.35
137
138
1.301677
GCAACCAGAGAAGGAAGGCG
61.302
60.000
0.00
0.00
0.00
5.52
138
139
0.321671
CAACCAGAGAAGGAAGGCGA
59.678
55.000
0.00
0.00
0.00
5.54
139
140
1.065854
CAACCAGAGAAGGAAGGCGAT
60.066
52.381
0.00
0.00
0.00
4.58
140
141
1.280457
ACCAGAGAAGGAAGGCGATT
58.720
50.000
0.00
0.00
0.00
3.34
141
142
1.065854
ACCAGAGAAGGAAGGCGATTG
60.066
52.381
0.00
0.00
0.00
2.67
142
143
1.208052
CCAGAGAAGGAAGGCGATTGA
59.792
52.381
0.00
0.00
0.00
2.57
143
144
2.548875
CAGAGAAGGAAGGCGATTGAG
58.451
52.381
0.00
0.00
0.00
3.02
144
145
1.484240
AGAGAAGGAAGGCGATTGAGG
59.516
52.381
0.00
0.00
0.00
3.86
145
146
1.208293
GAGAAGGAAGGCGATTGAGGT
59.792
52.381
0.00
0.00
0.00
3.85
146
147
2.431057
GAGAAGGAAGGCGATTGAGGTA
59.569
50.000
0.00
0.00
0.00
3.08
147
148
2.432510
AGAAGGAAGGCGATTGAGGTAG
59.567
50.000
0.00
0.00
0.00
3.18
148
149
1.123928
AGGAAGGCGATTGAGGTAGG
58.876
55.000
0.00
0.00
0.00
3.18
149
150
0.106894
GGAAGGCGATTGAGGTAGGG
59.893
60.000
0.00
0.00
0.00
3.53
150
151
0.106894
GAAGGCGATTGAGGTAGGGG
59.893
60.000
0.00
0.00
0.00
4.79
151
152
0.326238
AAGGCGATTGAGGTAGGGGA
60.326
55.000
0.00
0.00
0.00
4.81
152
153
0.104934
AGGCGATTGAGGTAGGGGAT
60.105
55.000
0.00
0.00
0.00
3.85
153
154
0.321996
GGCGATTGAGGTAGGGGATC
59.678
60.000
0.00
0.00
0.00
3.36
154
155
0.038159
GCGATTGAGGTAGGGGATCG
60.038
60.000
0.00
0.00
41.67
3.69
155
156
1.617322
CGATTGAGGTAGGGGATCGA
58.383
55.000
0.00
0.00
41.37
3.59
156
157
1.542030
CGATTGAGGTAGGGGATCGAG
59.458
57.143
0.00
0.00
41.37
4.04
157
158
2.814469
CGATTGAGGTAGGGGATCGAGA
60.814
54.545
0.00
0.00
41.37
4.04
158
159
2.366640
TTGAGGTAGGGGATCGAGAG
57.633
55.000
0.00
0.00
0.00
3.20
159
160
0.478942
TGAGGTAGGGGATCGAGAGG
59.521
60.000
0.00
0.00
0.00
3.69
160
161
0.479378
GAGGTAGGGGATCGAGAGGT
59.521
60.000
0.00
0.00
0.00
3.85
161
162
1.704070
GAGGTAGGGGATCGAGAGGTA
59.296
57.143
0.00
0.00
0.00
3.08
162
163
1.706305
AGGTAGGGGATCGAGAGGTAG
59.294
57.143
0.00
0.00
0.00
3.18
163
164
1.272037
GGTAGGGGATCGAGAGGTAGG
60.272
61.905
0.00
0.00
0.00
3.18
164
165
1.704070
GTAGGGGATCGAGAGGTAGGA
59.296
57.143
0.00
0.00
0.00
2.94
165
166
0.774908
AGGGGATCGAGAGGTAGGAG
59.225
60.000
0.00
0.00
0.00
3.69
166
167
0.772384
GGGGATCGAGAGGTAGGAGA
59.228
60.000
0.00
0.00
0.00
3.71
167
168
1.546099
GGGGATCGAGAGGTAGGAGAC
60.546
61.905
0.00
0.00
0.00
3.36
168
169
1.515081
GGATCGAGAGGTAGGAGACG
58.485
60.000
0.00
0.00
0.00
4.18
169
170
1.070445
GGATCGAGAGGTAGGAGACGA
59.930
57.143
0.00
0.00
0.00
4.20
170
171
2.137523
GATCGAGAGGTAGGAGACGAC
58.862
57.143
0.00
0.00
34.90
4.34
171
172
0.179116
TCGAGAGGTAGGAGACGACG
60.179
60.000
0.00
0.00
36.74
5.12
172
173
1.152989
CGAGAGGTAGGAGACGACGG
61.153
65.000
0.00
0.00
36.74
4.79
173
174
1.438562
GAGAGGTAGGAGACGACGGC
61.439
65.000
0.00
0.00
36.74
5.68
174
175
2.821688
GAGGTAGGAGACGACGGCG
61.822
68.421
10.39
10.39
44.79
6.46
175
176
2.821366
GGTAGGAGACGACGGCGA
60.821
66.667
22.49
0.00
41.64
5.54
176
177
2.402787
GTAGGAGACGACGGCGAC
59.597
66.667
22.49
13.05
41.64
5.19
177
178
2.046988
TAGGAGACGACGGCGACA
60.047
61.111
22.49
0.00
41.64
4.35
178
179
2.393768
TAGGAGACGACGGCGACAC
61.394
63.158
22.49
10.64
41.64
3.67
191
192
2.987547
GACACGTCGGTCTGGGGA
60.988
66.667
0.00
0.00
34.92
4.81
192
193
2.283676
ACACGTCGGTCTGGGGAT
60.284
61.111
0.00
0.00
0.00
3.85
193
194
2.280823
GACACGTCGGTCTGGGGATC
62.281
65.000
0.00
0.00
34.92
3.36
194
195
3.138798
ACGTCGGTCTGGGGATCG
61.139
66.667
0.00
0.00
46.36
3.69
200
201
2.604118
GGTCTGGGGATCGAAAGGA
58.396
57.895
0.00
0.00
0.00
3.36
201
202
0.466124
GGTCTGGGGATCGAAAGGAG
59.534
60.000
0.00
0.00
0.00
3.69
202
203
0.466124
GTCTGGGGATCGAAAGGAGG
59.534
60.000
0.00
0.00
0.00
4.30
203
204
1.147153
CTGGGGATCGAAAGGAGGC
59.853
63.158
0.00
0.00
0.00
4.70
204
205
2.330924
CTGGGGATCGAAAGGAGGCC
62.331
65.000
0.00
0.00
0.00
5.19
205
206
2.109181
GGGATCGAAAGGAGGCCG
59.891
66.667
0.00
0.00
0.00
6.13
206
207
2.109181
GGATCGAAAGGAGGCCGG
59.891
66.667
0.00
0.00
0.00
6.13
207
208
2.109181
GATCGAAAGGAGGCCGGG
59.891
66.667
2.18
0.00
0.00
5.73
208
209
2.365105
ATCGAAAGGAGGCCGGGA
60.365
61.111
2.18
0.00
0.00
5.14
209
210
2.646117
GATCGAAAGGAGGCCGGGAC
62.646
65.000
2.18
0.00
0.00
4.46
257
258
4.974989
GGTCGTTTGCCCGGACGT
62.975
66.667
0.73
0.00
40.03
4.34
258
259
3.708734
GTCGTTTGCCCGGACGTG
61.709
66.667
0.73
0.00
40.03
4.49
259
260
4.973055
TCGTTTGCCCGGACGTGG
62.973
66.667
0.73
0.00
40.03
4.94
268
269
4.770874
CGGACGTGGGGGCGATTT
62.771
66.667
0.00
0.00
35.59
2.17
269
270
2.360726
GGACGTGGGGGCGATTTT
60.361
61.111
0.00
0.00
35.59
1.82
270
271
2.696759
GGACGTGGGGGCGATTTTG
61.697
63.158
0.00
0.00
35.59
2.44
271
272
3.336715
GACGTGGGGGCGATTTTGC
62.337
63.158
0.00
0.00
35.59
3.68
279
280
4.243383
GCGATTTTGCCACACACC
57.757
55.556
0.00
0.00
0.00
4.16
280
281
1.729131
GCGATTTTGCCACACACCG
60.729
57.895
0.00
0.00
0.00
4.94
281
282
1.945522
CGATTTTGCCACACACCGA
59.054
52.632
0.00
0.00
0.00
4.69
282
283
0.309302
CGATTTTGCCACACACCGAA
59.691
50.000
0.00
0.00
0.00
4.30
283
284
1.766069
GATTTTGCCACACACCGAAC
58.234
50.000
0.00
0.00
0.00
3.95
284
285
0.030101
ATTTTGCCACACACCGAACG
59.970
50.000
0.00
0.00
0.00
3.95
285
286
1.306642
TTTTGCCACACACCGAACGT
61.307
50.000
0.00
0.00
0.00
3.99
297
298
3.712881
GAACGTGCGGGCTGTGAC
61.713
66.667
0.00
0.00
0.00
3.67
298
299
4.235762
AACGTGCGGGCTGTGACT
62.236
61.111
0.00
0.00
0.00
3.41
299
300
4.969196
ACGTGCGGGCTGTGACTG
62.969
66.667
0.00
0.00
0.00
3.51
300
301
4.969196
CGTGCGGGCTGTGACTGT
62.969
66.667
0.00
0.00
0.00
3.55
301
302
3.349006
GTGCGGGCTGTGACTGTG
61.349
66.667
0.00
0.00
0.00
3.66
343
344
3.719144
CGGGTTCGTTTCCGTGCC
61.719
66.667
0.00
0.00
41.23
5.01
344
345
2.592287
GGGTTCGTTTCCGTGCCA
60.592
61.111
0.00
0.00
35.01
4.92
345
346
2.635338
GGTTCGTTTCCGTGCCAC
59.365
61.111
0.00
0.00
35.01
5.01
346
347
2.181521
GGTTCGTTTCCGTGCCACA
61.182
57.895
0.00
0.00
35.01
4.17
347
348
1.010462
GTTCGTTTCCGTGCCACAC
60.010
57.895
0.00
0.00
35.01
3.82
348
349
1.449778
TTCGTTTCCGTGCCACACA
60.450
52.632
0.00
0.00
33.40
3.72
349
350
1.433053
TTCGTTTCCGTGCCACACAG
61.433
55.000
0.00
0.00
33.40
3.66
350
351
2.892334
CGTTTCCGTGCCACACAGG
61.892
63.158
0.00
1.06
41.84
4.00
363
364
4.402528
ACAGGGCGTGCGGCAATA
62.403
61.111
19.13
0.00
46.16
1.90
364
365
3.876198
CAGGGCGTGCGGCAATAC
61.876
66.667
19.13
0.00
46.16
1.89
365
366
4.402528
AGGGCGTGCGGCAATACA
62.403
61.111
19.13
0.00
46.16
2.29
366
367
4.174129
GGGCGTGCGGCAATACAC
62.174
66.667
19.13
0.00
46.16
2.90
367
368
4.174129
GGCGTGCGGCAATACACC
62.174
66.667
3.23
0.00
46.16
4.16
368
369
3.427425
GCGTGCGGCAATACACCA
61.427
61.111
3.23
0.00
42.87
4.17
369
370
2.478746
CGTGCGGCAATACACCAC
59.521
61.111
3.23
0.00
33.09
4.16
370
371
2.321333
CGTGCGGCAATACACCACA
61.321
57.895
3.23
0.00
33.09
4.17
371
372
1.209127
GTGCGGCAATACACCACAC
59.791
57.895
3.23
0.00
33.45
3.82
372
373
1.227973
TGCGGCAATACACCACACA
60.228
52.632
0.00
0.00
0.00
3.72
373
374
0.607762
TGCGGCAATACACCACACAT
60.608
50.000
0.00
0.00
0.00
3.21
374
375
0.179166
GCGGCAATACACCACACATG
60.179
55.000
0.00
0.00
0.00
3.21
375
376
1.164411
CGGCAATACACCACACATGT
58.836
50.000
0.00
0.00
0.00
3.21
376
377
1.135717
CGGCAATACACCACACATGTG
60.136
52.381
24.25
24.25
45.23
3.21
386
387
2.811902
CACACATGTGGCAGTTATCG
57.188
50.000
28.64
0.77
42.10
2.92
387
388
1.398041
CACACATGTGGCAGTTATCGG
59.602
52.381
28.64
0.23
42.10
4.18
388
389
0.378257
CACATGTGGCAGTTATCGGC
59.622
55.000
18.51
0.00
0.00
5.54
389
390
1.089481
ACATGTGGCAGTTATCGGCG
61.089
55.000
0.00
0.00
35.70
6.46
390
391
1.089481
CATGTGGCAGTTATCGGCGT
61.089
55.000
6.85
0.00
35.70
5.68
391
392
0.810031
ATGTGGCAGTTATCGGCGTC
60.810
55.000
6.85
0.00
35.70
5.19
392
393
2.171725
GTGGCAGTTATCGGCGTCC
61.172
63.158
6.85
0.00
35.70
4.79
438
439
8.455682
AGTAGTCTTTTCACATTTTTCGTTTGA
58.544
29.630
0.00
0.00
0.00
2.69
515
516
2.110213
TGTGCGGGTGGACAGAAC
59.890
61.111
0.00
0.00
41.94
3.01
516
517
2.110213
GTGCGGGTGGACAGAACA
59.890
61.111
0.00
0.00
36.29
3.18
517
518
1.961277
GTGCGGGTGGACAGAACAG
60.961
63.158
0.00
0.00
36.29
3.16
518
519
2.358737
GCGGGTGGACAGAACAGG
60.359
66.667
0.00
0.00
0.00
4.00
519
520
2.347490
CGGGTGGACAGAACAGGG
59.653
66.667
0.00
0.00
0.00
4.45
520
521
2.214216
CGGGTGGACAGAACAGGGA
61.214
63.158
0.00
0.00
0.00
4.20
521
522
1.679898
GGGTGGACAGAACAGGGAG
59.320
63.158
0.00
0.00
0.00
4.30
522
523
0.836400
GGGTGGACAGAACAGGGAGA
60.836
60.000
0.00
0.00
0.00
3.71
523
524
0.610687
GGTGGACAGAACAGGGAGAG
59.389
60.000
0.00
0.00
0.00
3.20
524
525
1.343069
GTGGACAGAACAGGGAGAGT
58.657
55.000
0.00
0.00
0.00
3.24
541
542
3.840890
GAGTATCTGGTGCTATCGAGG
57.159
52.381
0.00
0.00
0.00
4.63
568
569
2.549926
TGCTACCGTGATACAAGCATG
58.450
47.619
0.00
0.00
38.22
4.06
569
570
1.261619
GCTACCGTGATACAAGCATGC
59.738
52.381
10.51
10.51
33.38
4.06
573
574
1.356624
GTGATACAAGCATGCGGGC
59.643
57.895
13.01
3.99
0.00
6.13
583
584
4.483243
ATGCGGGCCGTCGGATTT
62.483
61.111
28.82
1.65
37.96
2.17
594
595
2.793232
CCGTCGGATTTTTAGATCGGAC
59.207
50.000
4.91
12.69
45.45
4.79
596
597
2.793232
GTCGGATTTTTAGATCGGACGG
59.207
50.000
8.97
0.00
42.53
4.79
600
601
3.186613
GGATTTTTAGATCGGACGGCATC
59.813
47.826
0.00
0.00
0.00
3.91
603
604
0.673985
TTAGATCGGACGGCATCTGG
59.326
55.000
1.39
0.00
34.03
3.86
604
605
1.179174
TAGATCGGACGGCATCTGGG
61.179
60.000
1.39
0.00
34.03
4.45
606
607
2.427540
GATCGGACGGCATCTGGGAG
62.428
65.000
0.00
0.00
34.03
4.30
616
617
1.271597
GCATCTGGGAGTTGTTGGACT
60.272
52.381
0.00
0.00
0.00
3.85
625
626
0.531974
GTTGTTGGACTCGCTGGACA
60.532
55.000
0.00
0.00
0.00
4.02
630
631
0.678684
TGGACTCGCTGGACATACGA
60.679
55.000
0.00
0.00
0.00
3.43
646
647
4.156008
ACATACGAGCAATTTTTGGACTCC
59.844
41.667
0.00
0.00
0.00
3.85
650
651
3.253188
CGAGCAATTTTTGGACTCCTTGA
59.747
43.478
0.00
0.00
0.00
3.02
652
653
5.205759
AGCAATTTTTGGACTCCTTGAAG
57.794
39.130
0.00
0.00
0.00
3.02
654
655
4.309933
CAATTTTTGGACTCCTTGAAGGC
58.690
43.478
6.30
0.00
34.61
4.35
685
688
9.897744
TTTTTAATGTTGCAGAGTTATTGAGAG
57.102
29.630
0.00
0.00
0.00
3.20
696
699
1.687563
TATTGAGAGCCGTCCGATCA
58.312
50.000
0.00
0.00
0.00
2.92
710
713
0.577269
CGATCAGAAAATCCGACGGC
59.423
55.000
9.66
0.00
0.00
5.68
714
717
1.376812
AGAAAATCCGACGGCCCAC
60.377
57.895
9.66
0.00
0.00
4.61
720
723
2.406002
ATCCGACGGCCCACAAGTTT
62.406
55.000
9.66
0.00
0.00
2.66
721
724
2.637025
CGACGGCCCACAAGTTTG
59.363
61.111
0.00
0.00
0.00
2.93
732
735
4.066490
CCCACAAGTTTGTATCACGGTAA
58.934
43.478
0.00
0.00
39.91
2.85
742
745
5.314923
TGTATCACGGTAACACCTAAGAC
57.685
43.478
0.00
0.00
35.66
3.01
743
746
5.012239
TGTATCACGGTAACACCTAAGACT
58.988
41.667
0.00
0.00
35.66
3.24
744
747
5.477984
TGTATCACGGTAACACCTAAGACTT
59.522
40.000
0.00
0.00
35.66
3.01
745
748
4.247267
TCACGGTAACACCTAAGACTTG
57.753
45.455
0.00
0.00
35.66
3.16
746
749
3.006110
TCACGGTAACACCTAAGACTTGG
59.994
47.826
0.00
0.00
35.66
3.61
747
750
2.967887
ACGGTAACACCTAAGACTTGGT
59.032
45.455
0.00
0.85
35.66
3.67
748
751
4.022068
CACGGTAACACCTAAGACTTGGTA
60.022
45.833
8.44
0.00
35.66
3.25
749
752
4.219288
ACGGTAACACCTAAGACTTGGTAG
59.781
45.833
8.44
6.77
35.66
3.18
750
753
4.502016
GGTAACACCTAAGACTTGGTAGC
58.498
47.826
8.44
0.00
34.73
3.58
751
754
4.020839
GGTAACACCTAAGACTTGGTAGCA
60.021
45.833
8.44
0.00
34.73
3.49
752
755
4.910458
AACACCTAAGACTTGGTAGCAT
57.090
40.909
0.00
0.00
34.79
3.79
796
799
2.867472
CGGCACATGTCCGGTTTC
59.133
61.111
21.74
0.00
42.99
2.78
838
841
1.219393
GCCGGACCTCTTCCTCTTG
59.781
63.158
5.05
0.00
43.25
3.02
982
985
0.973496
GCTTCGTCTCCCTCCTCCTT
60.973
60.000
0.00
0.00
0.00
3.36
1235
1240
1.132453
GAGAATTAGCACGTTTGGGGC
59.868
52.381
0.00
0.00
0.00
5.80
1411
1416
1.002251
CTCGACAATCGCCTCTACTCC
60.002
57.143
0.00
0.00
40.21
3.85
1534
1539
3.070018
ACACTGAGCATCACAAAGCTAC
58.930
45.455
0.00
0.00
42.56
3.58
1635
1640
3.192541
TGCTTCAGAAGTACAAGCACA
57.807
42.857
12.18
0.00
45.91
4.57
1666
1671
3.568538
CATGTGTCTTTAGGTTTGCAGC
58.431
45.455
0.00
0.00
0.00
5.25
2066
2071
0.386113
GCGTGGCTCTACCTCCTTAG
59.614
60.000
0.00
0.00
40.22
2.18
2081
2086
4.202472
CCTCCTTAGAGTCACCAAAAGGTT
60.202
45.833
0.00
0.00
38.58
3.50
2433
2438
4.501559
TCCGAATACGATTGAAAACGCTAG
59.498
41.667
0.00
0.00
42.66
3.42
2465
2470
2.364002
GCCTAAAGGGTCAAGTTTGCAA
59.636
45.455
0.00
0.00
37.43
4.08
3644
3652
2.025321
ACAACTCCAGTCAACAAAGGGT
60.025
45.455
0.00
0.00
0.00
4.34
4369
4377
1.198759
ACACCCTACTCCGGCACATT
61.199
55.000
0.00
0.00
0.00
2.71
4454
4462
7.568199
ACAATCGAGTTTTTATGGGGAATAG
57.432
36.000
0.00
0.00
0.00
1.73
4913
4932
3.805971
CAGCTATGATTTGATGCTCGTCA
59.194
43.478
0.00
0.00
0.00
4.35
4925
4944
1.000163
TGCTCGTCAGGAGTTGAGAAC
60.000
52.381
0.00
0.00
45.03
3.01
5125
5147
3.001838
GTGTTGTGTCGTGAATGCTGTTA
59.998
43.478
0.00
0.00
0.00
2.41
5145
5167
6.123651
TGTTAAGTTTTAGTGGCCTTCTCAA
58.876
36.000
3.32
0.00
0.00
3.02
5254
5277
3.071312
TGTTTTAGCCGTAAGAAGGGACA
59.929
43.478
0.00
0.00
43.02
4.02
5271
5294
7.664731
AGAAGGGACAGATTTATGCATCAATAG
59.335
37.037
0.19
3.31
0.00
1.73
5310
5333
5.749588
CAGCTCTGTGATAGTTTCATCTCTG
59.250
44.000
0.00
0.00
36.54
3.35
5317
5340
4.713814
TGATAGTTTCATCTCTGTGCCTCT
59.286
41.667
0.00
0.00
0.00
3.69
5465
5488
4.130118
AGATGAGATTTTCATACACGGCC
58.870
43.478
0.00
0.00
46.51
6.13
5774
6119
5.416271
TTTCTTACCTCGCAACTATCCTT
57.584
39.130
0.00
0.00
0.00
3.36
5784
6129
6.316390
CCTCGCAACTATCCTTTATGAAAACT
59.684
38.462
0.00
0.00
0.00
2.66
5825
6170
8.156820
TGAGAGTTTTCATGAGGTAGAATTCAA
58.843
33.333
8.44
0.00
0.00
2.69
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
4.434330
CGACGAGCTAAAAACAAGTGGATC
60.434
45.833
0.00
0.00
0.00
3.36
1
2
3.432252
CGACGAGCTAAAAACAAGTGGAT
59.568
43.478
0.00
0.00
0.00
3.41
2
3
2.798283
CGACGAGCTAAAAACAAGTGGA
59.202
45.455
0.00
0.00
0.00
4.02
3
4
2.542595
ACGACGAGCTAAAAACAAGTGG
59.457
45.455
0.00
0.00
0.00
4.00
4
5
3.489785
AGACGACGAGCTAAAAACAAGTG
59.510
43.478
0.00
0.00
0.00
3.16
5
6
3.714391
AGACGACGAGCTAAAAACAAGT
58.286
40.909
0.00
0.00
0.00
3.16
6
7
4.446234
CAAGACGACGAGCTAAAAACAAG
58.554
43.478
0.00
0.00
0.00
3.16
7
8
3.246699
CCAAGACGACGAGCTAAAAACAA
59.753
43.478
0.00
0.00
0.00
2.83
8
9
2.798283
CCAAGACGACGAGCTAAAAACA
59.202
45.455
0.00
0.00
0.00
2.83
9
10
2.157085
CCCAAGACGACGAGCTAAAAAC
59.843
50.000
0.00
0.00
0.00
2.43
10
11
2.036217
TCCCAAGACGACGAGCTAAAAA
59.964
45.455
0.00
0.00
0.00
1.94
11
12
1.614903
TCCCAAGACGACGAGCTAAAA
59.385
47.619
0.00
0.00
0.00
1.52
12
13
1.201647
CTCCCAAGACGACGAGCTAAA
59.798
52.381
0.00
0.00
0.00
1.85
13
14
0.809385
CTCCCAAGACGACGAGCTAA
59.191
55.000
0.00
0.00
0.00
3.09
14
15
1.030488
CCTCCCAAGACGACGAGCTA
61.030
60.000
0.00
0.00
0.00
3.32
15
16
2.344203
CCTCCCAAGACGACGAGCT
61.344
63.158
0.00
0.00
0.00
4.09
16
17
2.182030
CCTCCCAAGACGACGAGC
59.818
66.667
0.00
0.00
0.00
5.03
17
18
1.977544
ACCCTCCCAAGACGACGAG
60.978
63.158
0.00
0.00
0.00
4.18
18
19
2.116772
ACCCTCCCAAGACGACGA
59.883
61.111
0.00
0.00
0.00
4.20
19
20
2.261671
CACCCTCCCAAGACGACG
59.738
66.667
0.00
0.00
0.00
5.12
20
21
2.663196
CCACCCTCCCAAGACGAC
59.337
66.667
0.00
0.00
0.00
4.34
21
22
2.606519
CCCACCCTCCCAAGACGA
60.607
66.667
0.00
0.00
0.00
4.20
22
23
3.717294
CCCCACCCTCCCAAGACG
61.717
72.222
0.00
0.00
0.00
4.18
23
24
2.160853
AACCCCACCCTCCCAAGAC
61.161
63.158
0.00
0.00
0.00
3.01
24
25
2.160171
CAACCCCACCCTCCCAAGA
61.160
63.158
0.00
0.00
0.00
3.02
25
26
2.440599
CAACCCCACCCTCCCAAG
59.559
66.667
0.00
0.00
0.00
3.61
26
27
3.189646
CCAACCCCACCCTCCCAA
61.190
66.667
0.00
0.00
0.00
4.12
27
28
4.209620
TCCAACCCCACCCTCCCA
62.210
66.667
0.00
0.00
0.00
4.37
28
29
3.339093
CTCCAACCCCACCCTCCC
61.339
72.222
0.00
0.00
0.00
4.30
29
30
3.339093
CCTCCAACCCCACCCTCC
61.339
72.222
0.00
0.00
0.00
4.30
30
31
3.339093
CCCTCCAACCCCACCCTC
61.339
72.222
0.00
0.00
0.00
4.30
64
65
4.419921
CGCTAACCACCCACCCCC
62.420
72.222
0.00
0.00
0.00
5.40
65
66
4.419921
CCGCTAACCACCCACCCC
62.420
72.222
0.00
0.00
0.00
4.95
66
67
3.643554
ACCGCTAACCACCCACCC
61.644
66.667
0.00
0.00
0.00
4.61
67
68
2.359478
CACCGCTAACCACCCACC
60.359
66.667
0.00
0.00
0.00
4.61
68
69
2.359478
CCACCGCTAACCACCCAC
60.359
66.667
0.00
0.00
0.00
4.61
69
70
3.642503
CCCACCGCTAACCACCCA
61.643
66.667
0.00
0.00
0.00
4.51
70
71
2.814913
CTTCCCACCGCTAACCACCC
62.815
65.000
0.00
0.00
0.00
4.61
71
72
1.376812
CTTCCCACCGCTAACCACC
60.377
63.158
0.00
0.00
0.00
4.61
72
73
1.376812
CCTTCCCACCGCTAACCAC
60.377
63.158
0.00
0.00
0.00
4.16
73
74
3.074281
CCTTCCCACCGCTAACCA
58.926
61.111
0.00
0.00
0.00
3.67
74
75
2.437895
GCCTTCCCACCGCTAACC
60.438
66.667
0.00
0.00
0.00
2.85
75
76
2.818274
CGCCTTCCCACCGCTAAC
60.818
66.667
0.00
0.00
0.00
2.34
76
77
4.770874
GCGCCTTCCCACCGCTAA
62.771
66.667
0.00
0.00
43.95
3.09
80
81
4.530857
CCTAGCGCCTTCCCACCG
62.531
72.222
2.29
0.00
0.00
4.94
81
82
4.176752
CCCTAGCGCCTTCCCACC
62.177
72.222
2.29
0.00
0.00
4.61
82
83
2.384653
GATCCCTAGCGCCTTCCCAC
62.385
65.000
2.29
0.00
0.00
4.61
83
84
2.040884
ATCCCTAGCGCCTTCCCA
60.041
61.111
2.29
0.00
0.00
4.37
84
85
1.839296
AGATCCCTAGCGCCTTCCC
60.839
63.158
2.29
0.00
0.00
3.97
85
86
1.369321
CAGATCCCTAGCGCCTTCC
59.631
63.158
2.29
0.00
0.00
3.46
86
87
1.301322
GCAGATCCCTAGCGCCTTC
60.301
63.158
2.29
0.00
0.00
3.46
87
88
1.341156
AAGCAGATCCCTAGCGCCTT
61.341
55.000
2.29
0.00
0.00
4.35
88
89
1.341156
AAAGCAGATCCCTAGCGCCT
61.341
55.000
2.29
0.00
0.00
5.52
89
90
1.147153
AAAGCAGATCCCTAGCGCC
59.853
57.895
2.29
0.00
0.00
6.53
90
91
1.162800
CCAAAGCAGATCCCTAGCGC
61.163
60.000
0.00
0.00
0.00
5.92
91
92
0.179000
ACCAAAGCAGATCCCTAGCG
59.821
55.000
0.00
0.00
0.00
4.26
92
93
2.019984
CAACCAAAGCAGATCCCTAGC
58.980
52.381
0.00
0.00
0.00
3.42
93
94
2.019984
GCAACCAAAGCAGATCCCTAG
58.980
52.381
0.00
0.00
0.00
3.02
94
95
1.340991
GGCAACCAAAGCAGATCCCTA
60.341
52.381
0.00
0.00
0.00
3.53
95
96
0.613012
GGCAACCAAAGCAGATCCCT
60.613
55.000
0.00
0.00
0.00
4.20
96
97
0.899717
TGGCAACCAAAGCAGATCCC
60.900
55.000
0.00
0.00
0.00
3.85
97
98
1.134907
CATGGCAACCAAAGCAGATCC
60.135
52.381
0.00
0.00
36.95
3.36
98
99
1.134907
CCATGGCAACCAAAGCAGATC
60.135
52.381
0.00
0.00
36.95
2.75
99
100
0.899720
CCATGGCAACCAAAGCAGAT
59.100
50.000
0.00
0.00
36.95
2.90
100
101
1.818959
GCCATGGCAACCAAAGCAGA
61.819
55.000
32.08
0.00
36.95
4.26
101
102
1.375013
GCCATGGCAACCAAAGCAG
60.375
57.895
32.08
0.00
36.95
4.24
102
103
2.742403
GCCATGGCAACCAAAGCA
59.258
55.556
32.08
0.00
36.95
3.91
112
113
1.318158
CCTTCTCTGGTTGCCATGGC
61.318
60.000
30.54
30.54
42.35
4.40
113
114
0.329261
TCCTTCTCTGGTTGCCATGG
59.671
55.000
7.63
7.63
30.82
3.66
114
115
2.089980
CTTCCTTCTCTGGTTGCCATG
58.910
52.381
0.00
0.00
30.82
3.66
115
116
1.005215
CCTTCCTTCTCTGGTTGCCAT
59.995
52.381
0.00
0.00
30.82
4.40
116
117
0.401738
CCTTCCTTCTCTGGTTGCCA
59.598
55.000
0.00
0.00
0.00
4.92
117
118
0.962855
GCCTTCCTTCTCTGGTTGCC
60.963
60.000
0.00
0.00
0.00
4.52
118
119
1.301677
CGCCTTCCTTCTCTGGTTGC
61.302
60.000
0.00
0.00
0.00
4.17
119
120
0.321671
TCGCCTTCCTTCTCTGGTTG
59.678
55.000
0.00
0.00
0.00
3.77
120
121
1.280457
ATCGCCTTCCTTCTCTGGTT
58.720
50.000
0.00
0.00
0.00
3.67
121
122
1.065854
CAATCGCCTTCCTTCTCTGGT
60.066
52.381
0.00
0.00
0.00
4.00
122
123
1.208052
TCAATCGCCTTCCTTCTCTGG
59.792
52.381
0.00
0.00
0.00
3.86
123
124
2.548875
CTCAATCGCCTTCCTTCTCTG
58.451
52.381
0.00
0.00
0.00
3.35
124
125
1.484240
CCTCAATCGCCTTCCTTCTCT
59.516
52.381
0.00
0.00
0.00
3.10
125
126
1.208293
ACCTCAATCGCCTTCCTTCTC
59.792
52.381
0.00
0.00
0.00
2.87
126
127
1.280457
ACCTCAATCGCCTTCCTTCT
58.720
50.000
0.00
0.00
0.00
2.85
127
128
2.483889
CCTACCTCAATCGCCTTCCTTC
60.484
54.545
0.00
0.00
0.00
3.46
128
129
1.486726
CCTACCTCAATCGCCTTCCTT
59.513
52.381
0.00
0.00
0.00
3.36
129
130
1.123928
CCTACCTCAATCGCCTTCCT
58.876
55.000
0.00
0.00
0.00
3.36
130
131
0.106894
CCCTACCTCAATCGCCTTCC
59.893
60.000
0.00
0.00
0.00
3.46
131
132
0.106894
CCCCTACCTCAATCGCCTTC
59.893
60.000
0.00
0.00
0.00
3.46
132
133
0.326238
TCCCCTACCTCAATCGCCTT
60.326
55.000
0.00
0.00
0.00
4.35
133
134
0.104934
ATCCCCTACCTCAATCGCCT
60.105
55.000
0.00
0.00
0.00
5.52
134
135
0.321996
GATCCCCTACCTCAATCGCC
59.678
60.000
0.00
0.00
0.00
5.54
135
136
0.038159
CGATCCCCTACCTCAATCGC
60.038
60.000
0.00
0.00
33.69
4.58
136
137
1.542030
CTCGATCCCCTACCTCAATCG
59.458
57.143
0.00
0.00
40.30
3.34
137
138
2.823154
CTCTCGATCCCCTACCTCAATC
59.177
54.545
0.00
0.00
0.00
2.67
138
139
2.491825
CCTCTCGATCCCCTACCTCAAT
60.492
54.545
0.00
0.00
0.00
2.57
139
140
1.133450
CCTCTCGATCCCCTACCTCAA
60.133
57.143
0.00
0.00
0.00
3.02
140
141
0.478942
CCTCTCGATCCCCTACCTCA
59.521
60.000
0.00
0.00
0.00
3.86
141
142
0.479378
ACCTCTCGATCCCCTACCTC
59.521
60.000
0.00
0.00
0.00
3.85
142
143
1.706305
CTACCTCTCGATCCCCTACCT
59.294
57.143
0.00
0.00
0.00
3.08
143
144
1.272037
CCTACCTCTCGATCCCCTACC
60.272
61.905
0.00
0.00
0.00
3.18
144
145
1.704070
TCCTACCTCTCGATCCCCTAC
59.296
57.143
0.00
0.00
0.00
3.18
145
146
1.986631
CTCCTACCTCTCGATCCCCTA
59.013
57.143
0.00
0.00
0.00
3.53
146
147
0.774908
CTCCTACCTCTCGATCCCCT
59.225
60.000
0.00
0.00
0.00
4.79
147
148
0.772384
TCTCCTACCTCTCGATCCCC
59.228
60.000
0.00
0.00
0.00
4.81
148
149
1.878948
CGTCTCCTACCTCTCGATCCC
60.879
61.905
0.00
0.00
0.00
3.85
149
150
1.070445
TCGTCTCCTACCTCTCGATCC
59.930
57.143
0.00
0.00
0.00
3.36
150
151
2.137523
GTCGTCTCCTACCTCTCGATC
58.862
57.143
0.00
0.00
0.00
3.69
151
152
1.538634
CGTCGTCTCCTACCTCTCGAT
60.539
57.143
0.00
0.00
0.00
3.59
152
153
0.179116
CGTCGTCTCCTACCTCTCGA
60.179
60.000
0.00
0.00
0.00
4.04
153
154
1.152989
CCGTCGTCTCCTACCTCTCG
61.153
65.000
0.00
0.00
0.00
4.04
154
155
1.438562
GCCGTCGTCTCCTACCTCTC
61.439
65.000
0.00
0.00
0.00
3.20
155
156
1.451747
GCCGTCGTCTCCTACCTCT
60.452
63.158
0.00
0.00
0.00
3.69
156
157
2.821688
CGCCGTCGTCTCCTACCTC
61.822
68.421
0.00
0.00
0.00
3.85
157
158
2.823147
CGCCGTCGTCTCCTACCT
60.823
66.667
0.00
0.00
0.00
3.08
158
159
2.821366
TCGCCGTCGTCTCCTACC
60.821
66.667
0.00
0.00
36.96
3.18
159
160
2.393768
TGTCGCCGTCGTCTCCTAC
61.394
63.158
0.00
0.00
36.96
3.18
160
161
2.046988
TGTCGCCGTCGTCTCCTA
60.047
61.111
0.00
0.00
36.96
2.94
161
162
3.735029
GTGTCGCCGTCGTCTCCT
61.735
66.667
0.00
0.00
36.96
3.69
163
164
4.380628
ACGTGTCGCCGTCGTCTC
62.381
66.667
0.00
0.00
35.95
3.36
164
165
4.380628
GACGTGTCGCCGTCGTCT
62.381
66.667
18.30
0.00
46.47
4.18
174
175
2.280823
GATCCCCAGACCGACGTGTC
62.281
65.000
0.00
0.00
35.43
3.67
175
176
2.283676
ATCCCCAGACCGACGTGT
60.284
61.111
0.00
0.00
0.00
4.49
176
177
2.494918
GATCCCCAGACCGACGTG
59.505
66.667
0.00
0.00
0.00
4.49
177
178
3.138798
CGATCCCCAGACCGACGT
61.139
66.667
0.00
0.00
0.00
4.34
178
179
1.940883
TTTCGATCCCCAGACCGACG
61.941
60.000
0.00
0.00
0.00
5.12
179
180
0.179108
CTTTCGATCCCCAGACCGAC
60.179
60.000
0.00
0.00
0.00
4.79
180
181
1.327690
CCTTTCGATCCCCAGACCGA
61.328
60.000
0.00
0.00
0.00
4.69
181
182
1.144057
CCTTTCGATCCCCAGACCG
59.856
63.158
0.00
0.00
0.00
4.79
182
183
0.466124
CTCCTTTCGATCCCCAGACC
59.534
60.000
0.00
0.00
0.00
3.85
183
184
0.466124
CCTCCTTTCGATCCCCAGAC
59.534
60.000
0.00
0.00
0.00
3.51
184
185
1.338136
GCCTCCTTTCGATCCCCAGA
61.338
60.000
0.00
0.00
0.00
3.86
185
186
1.147153
GCCTCCTTTCGATCCCCAG
59.853
63.158
0.00
0.00
0.00
4.45
186
187
2.375345
GGCCTCCTTTCGATCCCCA
61.375
63.158
0.00
0.00
0.00
4.96
187
188
2.511403
GGCCTCCTTTCGATCCCC
59.489
66.667
0.00
0.00
0.00
4.81
188
189
2.109181
CGGCCTCCTTTCGATCCC
59.891
66.667
0.00
0.00
0.00
3.85
189
190
2.109181
CCGGCCTCCTTTCGATCC
59.891
66.667
0.00
0.00
0.00
3.36
190
191
2.109181
CCCGGCCTCCTTTCGATC
59.891
66.667
0.00
0.00
0.00
3.69
191
192
2.365105
TCCCGGCCTCCTTTCGAT
60.365
61.111
0.00
0.00
0.00
3.59
192
193
3.387947
GTCCCGGCCTCCTTTCGA
61.388
66.667
0.00
0.00
0.00
3.71
193
194
4.814294
CGTCCCGGCCTCCTTTCG
62.814
72.222
0.00
0.00
0.00
3.46
194
195
3.387947
TCGTCCCGGCCTCCTTTC
61.388
66.667
0.00
0.00
0.00
2.62
195
196
3.703127
GTCGTCCCGGCCTCCTTT
61.703
66.667
0.00
0.00
0.00
3.11
196
197
4.698625
AGTCGTCCCGGCCTCCTT
62.699
66.667
0.00
0.00
28.67
3.36
240
241
4.974989
ACGTCCGGGCAAACGACC
62.975
66.667
19.01
0.00
41.29
4.79
241
242
3.708734
CACGTCCGGGCAAACGAC
61.709
66.667
19.01
0.00
41.29
4.34
242
243
4.973055
CCACGTCCGGGCAAACGA
62.973
66.667
19.01
0.00
41.29
3.85
251
252
4.770874
AAATCGCCCCCACGTCCG
62.771
66.667
0.00
0.00
0.00
4.79
252
253
2.360726
AAAATCGCCCCCACGTCC
60.361
61.111
0.00
0.00
0.00
4.79
253
254
2.874751
CAAAATCGCCCCCACGTC
59.125
61.111
0.00
0.00
0.00
4.34
254
255
3.370231
GCAAAATCGCCCCCACGT
61.370
61.111
0.00
0.00
0.00
4.49
262
263
1.729131
CGGTGTGTGGCAAAATCGC
60.729
57.895
0.00
0.00
0.00
4.58
263
264
0.309302
TTCGGTGTGTGGCAAAATCG
59.691
50.000
0.00
0.00
0.00
3.34
264
265
1.766069
GTTCGGTGTGTGGCAAAATC
58.234
50.000
0.00
0.00
0.00
2.17
265
266
0.030101
CGTTCGGTGTGTGGCAAAAT
59.970
50.000
0.00
0.00
0.00
1.82
266
267
1.306642
ACGTTCGGTGTGTGGCAAAA
61.307
50.000
0.00
0.00
0.00
2.44
267
268
1.745864
ACGTTCGGTGTGTGGCAAA
60.746
52.632
0.00
0.00
0.00
3.68
268
269
2.125065
ACGTTCGGTGTGTGGCAA
60.125
55.556
0.00
0.00
0.00
4.52
269
270
2.892914
CACGTTCGGTGTGTGGCA
60.893
61.111
0.00
0.00
41.89
4.92
280
281
3.712881
GTCACAGCCCGCACGTTC
61.713
66.667
0.00
0.00
0.00
3.95
281
282
4.235762
AGTCACAGCCCGCACGTT
62.236
61.111
0.00
0.00
0.00
3.99
282
283
4.969196
CAGTCACAGCCCGCACGT
62.969
66.667
0.00
0.00
0.00
4.49
283
284
4.969196
ACAGTCACAGCCCGCACG
62.969
66.667
0.00
0.00
0.00
5.34
284
285
3.349006
CACAGTCACAGCCCGCAC
61.349
66.667
0.00
0.00
0.00
5.34
333
334
2.551912
CCCTGTGTGGCACGGAAAC
61.552
63.158
13.77
6.00
42.79
2.78
334
335
2.203280
CCCTGTGTGGCACGGAAA
60.203
61.111
13.77
0.00
42.79
3.13
346
347
4.402528
TATTGCCGCACGCCCTGT
62.403
61.111
0.00
0.00
36.24
4.00
347
348
3.876198
GTATTGCCGCACGCCCTG
61.876
66.667
0.00
0.00
36.24
4.45
348
349
4.402528
TGTATTGCCGCACGCCCT
62.403
61.111
0.00
0.00
36.24
5.19
349
350
4.174129
GTGTATTGCCGCACGCCC
62.174
66.667
0.00
0.00
36.24
6.13
350
351
4.174129
GGTGTATTGCCGCACGCC
62.174
66.667
0.00
0.00
38.09
5.68
351
352
3.427425
TGGTGTATTGCCGCACGC
61.427
61.111
0.00
0.00
36.54
5.34
352
353
2.321333
TGTGGTGTATTGCCGCACG
61.321
57.895
0.00
0.00
41.07
5.34
353
354
3.661911
TGTGGTGTATTGCCGCAC
58.338
55.556
0.00
0.00
41.07
5.34
354
355
0.607762
ATGTGTGGTGTATTGCCGCA
60.608
50.000
0.00
0.00
43.38
5.69
355
356
0.179166
CATGTGTGGTGTATTGCCGC
60.179
55.000
0.00
0.00
37.06
6.53
356
357
1.135717
CACATGTGTGGTGTATTGCCG
60.136
52.381
18.03
0.00
42.10
5.69
357
358
2.634982
CACATGTGTGGTGTATTGCC
57.365
50.000
18.03
0.00
42.10
4.52
367
368
1.398041
CCGATAACTGCCACATGTGTG
59.602
52.381
23.79
15.96
45.23
3.82
368
369
1.737838
CCGATAACTGCCACATGTGT
58.262
50.000
23.79
8.06
0.00
3.72
369
370
0.378257
GCCGATAACTGCCACATGTG
59.622
55.000
19.31
19.31
0.00
3.21
370
371
1.089481
CGCCGATAACTGCCACATGT
61.089
55.000
0.00
0.00
0.00
3.21
371
372
1.089481
ACGCCGATAACTGCCACATG
61.089
55.000
0.00
0.00
0.00
3.21
372
373
0.810031
GACGCCGATAACTGCCACAT
60.810
55.000
0.00
0.00
0.00
3.21
373
374
1.447140
GACGCCGATAACTGCCACA
60.447
57.895
0.00
0.00
0.00
4.17
374
375
2.171725
GGACGCCGATAACTGCCAC
61.172
63.158
0.00
0.00
0.00
5.01
375
376
1.895020
AAGGACGCCGATAACTGCCA
61.895
55.000
0.00
0.00
0.00
4.92
376
377
0.743345
AAAGGACGCCGATAACTGCC
60.743
55.000
0.00
0.00
0.00
4.85
377
378
0.651031
GAAAGGACGCCGATAACTGC
59.349
55.000
0.00
0.00
0.00
4.40
378
379
2.295253
AGAAAGGACGCCGATAACTG
57.705
50.000
0.00
0.00
0.00
3.16
379
380
3.329929
AAAGAAAGGACGCCGATAACT
57.670
42.857
0.00
0.00
0.00
2.24
380
381
5.499047
CAATAAAGAAAGGACGCCGATAAC
58.501
41.667
0.00
0.00
0.00
1.89
381
382
4.573201
CCAATAAAGAAAGGACGCCGATAA
59.427
41.667
0.00
0.00
0.00
1.75
382
383
4.124238
CCAATAAAGAAAGGACGCCGATA
58.876
43.478
0.00
0.00
0.00
2.92
383
384
2.943033
CCAATAAAGAAAGGACGCCGAT
59.057
45.455
0.00
0.00
0.00
4.18
384
385
2.352388
CCAATAAAGAAAGGACGCCGA
58.648
47.619
0.00
0.00
0.00
5.54
385
386
1.400494
CCCAATAAAGAAAGGACGCCG
59.600
52.381
0.00
0.00
0.00
6.46
386
387
1.749063
CCCCAATAAAGAAAGGACGCC
59.251
52.381
0.00
0.00
0.00
5.68
387
388
1.749063
CCCCCAATAAAGAAAGGACGC
59.251
52.381
0.00
0.00
0.00
5.19
388
389
3.279434
CTCCCCCAATAAAGAAAGGACG
58.721
50.000
0.00
0.00
0.00
4.79
389
390
4.317530
ACTCCCCCAATAAAGAAAGGAC
57.682
45.455
0.00
0.00
0.00
3.85
390
391
5.554350
ACTTACTCCCCCAATAAAGAAAGGA
59.446
40.000
0.00
0.00
0.00
3.36
391
392
5.827756
ACTTACTCCCCCAATAAAGAAAGG
58.172
41.667
0.00
0.00
0.00
3.11
392
393
7.631007
ACTACTTACTCCCCCAATAAAGAAAG
58.369
38.462
0.00
0.00
0.00
2.62
438
439
5.337894
GCAGGCCTCACTCATGTATATGTAT
60.338
44.000
0.00
0.00
35.73
2.29
469
470
4.142425
GGTCCGGTTTGTGAAAGTAAAACA
60.142
41.667
0.00
0.00
35.88
2.83
508
509
3.383185
CCAGATACTCTCCCTGTTCTGTC
59.617
52.174
0.00
0.00
30.97
3.51
513
514
1.834263
GCACCAGATACTCTCCCTGTT
59.166
52.381
0.00
0.00
0.00
3.16
515
516
1.786937
AGCACCAGATACTCTCCCTG
58.213
55.000
0.00
0.00
0.00
4.45
516
517
3.773560
GATAGCACCAGATACTCTCCCT
58.226
50.000
0.00
0.00
0.00
4.20
517
518
2.490115
CGATAGCACCAGATACTCTCCC
59.510
54.545
0.00
0.00
0.00
4.30
518
519
3.413327
TCGATAGCACCAGATACTCTCC
58.587
50.000
0.00
0.00
0.00
3.71
519
520
3.438781
CCTCGATAGCACCAGATACTCTC
59.561
52.174
0.00
0.00
0.00
3.20
520
521
3.417101
CCTCGATAGCACCAGATACTCT
58.583
50.000
0.00
0.00
0.00
3.24
521
522
2.094957
GCCTCGATAGCACCAGATACTC
60.095
54.545
2.88
0.00
0.00
2.59
522
523
1.889829
GCCTCGATAGCACCAGATACT
59.110
52.381
2.88
0.00
0.00
2.12
523
524
1.889829
AGCCTCGATAGCACCAGATAC
59.110
52.381
9.92
0.00
0.00
2.24
524
525
2.294449
AGCCTCGATAGCACCAGATA
57.706
50.000
9.92
0.00
0.00
1.98
536
537
1.479323
ACGGTAGCATTTAAGCCTCGA
59.521
47.619
0.00
0.00
34.23
4.04
541
542
5.728351
TTGTATCACGGTAGCATTTAAGC
57.272
39.130
0.00
0.00
0.00
3.09
568
569
2.043676
CTAAAAATCCGACGGCCCGC
62.044
60.000
9.66
0.00
0.00
6.13
569
570
0.460635
TCTAAAAATCCGACGGCCCG
60.461
55.000
9.66
0.00
0.00
6.13
573
574
2.793232
GTCCGATCTAAAAATCCGACGG
59.207
50.000
7.84
7.84
40.36
4.79
583
584
1.068588
CCAGATGCCGTCCGATCTAAA
59.931
52.381
0.00
0.00
0.00
1.85
594
595
1.308069
CCAACAACTCCCAGATGCCG
61.308
60.000
0.00
0.00
0.00
5.69
596
597
1.168714
GTCCAACAACTCCCAGATGC
58.831
55.000
0.00
0.00
0.00
3.91
600
601
0.951040
GCGAGTCCAACAACTCCCAG
60.951
60.000
0.00
0.00
42.23
4.45
603
604
0.951040
CCAGCGAGTCCAACAACTCC
60.951
60.000
0.00
0.00
42.23
3.85
604
605
0.033504
TCCAGCGAGTCCAACAACTC
59.966
55.000
0.00
0.00
41.88
3.01
606
607
0.531974
TGTCCAGCGAGTCCAACAAC
60.532
55.000
0.00
0.00
0.00
3.32
616
617
0.459899
ATTGCTCGTATGTCCAGCGA
59.540
50.000
0.00
0.00
35.81
4.93
625
626
4.589908
AGGAGTCCAAAAATTGCTCGTAT
58.410
39.130
12.86
0.00
0.00
3.06
630
631
4.039609
CCTTCAAGGAGTCCAAAAATTGCT
59.960
41.667
12.86
0.00
37.67
3.91
663
664
5.586243
GGCTCTCAATAACTCTGCAACATTA
59.414
40.000
0.00
0.00
0.00
1.90
667
670
2.349886
CGGCTCTCAATAACTCTGCAAC
59.650
50.000
0.00
0.00
0.00
4.17
677
680
1.609072
CTGATCGGACGGCTCTCAATA
59.391
52.381
0.00
0.00
0.00
1.90
685
688
0.938008
GGATTTTCTGATCGGACGGC
59.062
55.000
2.94
0.00
0.00
5.68
696
699
1.376812
GTGGGCCGTCGGATTTTCT
60.377
57.895
17.49
0.00
0.00
2.52
710
713
2.500229
ACCGTGATACAAACTTGTGGG
58.500
47.619
5.34
2.21
42.31
4.61
714
717
4.753107
AGGTGTTACCGTGATACAAACTTG
59.247
41.667
0.00
0.00
44.90
3.16
720
723
5.012239
AGTCTTAGGTGTTACCGTGATACA
58.988
41.667
0.00
0.00
44.90
2.29
721
724
5.573337
AGTCTTAGGTGTTACCGTGATAC
57.427
43.478
0.00
0.00
44.90
2.24
732
735
4.910458
AATGCTACCAAGTCTTAGGTGT
57.090
40.909
13.77
1.01
38.87
4.16
742
745
6.149474
CCGGGAAAATATCTAATGCTACCAAG
59.851
42.308
0.00
0.00
0.00
3.61
743
746
6.001460
CCGGGAAAATATCTAATGCTACCAA
58.999
40.000
0.00
0.00
0.00
3.67
744
747
5.308497
TCCGGGAAAATATCTAATGCTACCA
59.692
40.000
0.00
0.00
0.00
3.25
745
748
5.642491
GTCCGGGAAAATATCTAATGCTACC
59.358
44.000
0.00
0.00
0.00
3.18
746
749
6.228258
TGTCCGGGAAAATATCTAATGCTAC
58.772
40.000
0.00
0.00
0.00
3.58
747
750
6.269077
TCTGTCCGGGAAAATATCTAATGCTA
59.731
38.462
0.00
0.00
0.00
3.49
748
751
5.071788
TCTGTCCGGGAAAATATCTAATGCT
59.928
40.000
0.00
0.00
0.00
3.79
749
752
5.305585
TCTGTCCGGGAAAATATCTAATGC
58.694
41.667
0.00
0.00
0.00
3.56
750
753
6.765989
TGTTCTGTCCGGGAAAATATCTAATG
59.234
38.462
0.00
0.00
0.00
1.90
751
754
6.895782
TGTTCTGTCCGGGAAAATATCTAAT
58.104
36.000
0.00
0.00
0.00
1.73
752
755
6.302535
TGTTCTGTCCGGGAAAATATCTAA
57.697
37.500
0.00
0.00
0.00
2.10
796
799
1.461127
GCTAATCATCGCGGGCTTTAG
59.539
52.381
6.13
10.41
0.00
1.85
838
841
1.136984
CTGGTGAGTACGCGAGACC
59.863
63.158
15.93
11.29
35.01
3.85
982
985
2.361104
GTTCCGGCAGATTGGGCA
60.361
61.111
0.00
0.00
0.00
5.36
1187
1192
2.395360
GCCACAATTACGCGCTCCA
61.395
57.895
5.73
0.00
0.00
3.86
1411
1416
7.609760
TTACCACACATAATCTGTTAGCAAG
57.390
36.000
0.00
0.00
35.29
4.01
1534
1539
4.008074
AGACACCCATGTGACTGTAAAG
57.992
45.455
0.00
0.00
44.07
1.85
2433
2438
1.749258
CTTTAGGCCCCGCTTGGAC
60.749
63.158
0.00
0.00
35.39
4.02
2716
2724
3.436906
CCCATTGCCCTGAAGGATTGATA
60.437
47.826
0.00
0.00
38.24
2.15
3644
3652
3.824443
CTGGATATTGAATGGCATGCTCA
59.176
43.478
18.92
14.25
0.00
4.26
4201
4209
4.887071
CCACTGCCATTAACCTATAAGCAA
59.113
41.667
0.00
0.00
0.00
3.91
4369
4377
8.999431
GGTTTGTTGTCATTATTCTCAAGAGTA
58.001
33.333
0.00
0.00
0.00
2.59
4454
4462
7.610305
TGGTTAACATATCCTCTCCTTTTCAAC
59.390
37.037
8.10
0.00
0.00
3.18
4913
4932
4.417426
TCTTTTTCCGTTCTCAACTCCT
57.583
40.909
0.00
0.00
0.00
3.69
4925
4944
1.663643
TCGAATCGGCATCTTTTTCCG
59.336
47.619
1.76
0.00
44.16
4.30
5125
5147
4.793201
AGTTGAGAAGGCCACTAAAACTT
58.207
39.130
5.01
0.00
0.00
2.66
5145
5167
5.550403
TGATAGAGGGTAAACCAAAAGGAGT
59.450
40.000
0.81
0.00
43.89
3.85
5271
5294
5.178996
CACAGAGCTGTAGATTATGGAATGC
59.821
44.000
2.36
0.00
42.83
3.56
5310
5333
6.820656
TGAGAATGAGAAAAGATAAGAGGCAC
59.179
38.462
0.00
0.00
0.00
5.01
5576
5599
4.267690
TCGCAATTAATCGAGATGTGTGTC
59.732
41.667
0.00
0.00
0.00
3.67
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.