Multiple sequence alignment - TraesCS7D01G284500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G284500 chr7D 100.000 7410 0 0 1 7410 302029467 302022058 0.000000e+00 13684.0
1 TraesCS7D01G284500 chr7D 100.000 54 0 0 6874 6927 302022540 302022487 4.730000e-17 100.0
2 TraesCS7D01G284500 chr7D 100.000 54 0 0 6928 6981 302022594 302022541 4.730000e-17 100.0
3 TraesCS7D01G284500 chr7A 98.159 6354 83 10 504 6849 355696135 355689808 0.000000e+00 11055.0
4 TraesCS7D01G284500 chr7A 89.114 395 30 11 117 504 42137143 42136755 5.200000e-131 479.0
5 TraesCS7D01G284500 chr7A 84.890 364 26 16 6928 7269 355689657 355689301 2.560000e-89 340.0
6 TraesCS7D01G284500 chr7A 91.367 139 10 2 7273 7410 355689267 355689130 9.810000e-44 189.0
7 TraesCS7D01G284500 chr7A 92.157 51 3 1 6869 6918 355689662 355689612 3.710000e-08 71.3
8 TraesCS7D01G284500 chr7B 97.758 6424 111 13 504 6919 350449831 350456229 0.000000e+00 11034.0
9 TraesCS7D01G284500 chr7B 91.367 139 7 3 7134 7271 350456672 350456806 1.270000e-42 185.0
10 TraesCS7D01G284500 chr7B 87.209 172 7 6 6928 7084 350456183 350456354 1.640000e-41 182.0
11 TraesCS7D01G284500 chr7B 81.250 144 21 4 7271 7410 46013600 46013459 2.190000e-20 111.0
12 TraesCS7D01G284500 chr7B 91.935 62 2 2 7025 7084 350456499 350456559 4.760000e-12 84.2
13 TraesCS7D01G284500 chrUn 100.000 418 0 0 4296 4713 477001134 477000717 0.000000e+00 773.0
14 TraesCS7D01G284500 chr1D 92.621 393 24 4 117 505 450517485 450517094 1.810000e-155 560.0
15 TraesCS7D01G284500 chr1D 91.071 392 28 6 117 504 223442045 223441657 2.370000e-144 523.0
16 TraesCS7D01G284500 chr1D 100.000 116 0 0 1 116 398931379 398931494 1.620000e-51 215.0
17 TraesCS7D01G284500 chr1D 99.138 116 1 0 1 116 38865366 38865481 7.530000e-50 209.0
18 TraesCS7D01G284500 chr1D 99.138 116 1 0 1 116 79030404 79030289 7.530000e-50 209.0
19 TraesCS7D01G284500 chr1D 99.138 116 1 0 1 116 99799189 99799304 7.530000e-50 209.0
20 TraesCS7D01G284500 chr1D 99.138 116 1 0 1 116 103686921 103687036 7.530000e-50 209.0
21 TraesCS7D01G284500 chr1D 99.138 116 1 0 1 116 110769207 110769322 7.530000e-50 209.0
22 TraesCS7D01G284500 chr1D 99.138 116 1 0 1 116 127939235 127939350 7.530000e-50 209.0
23 TraesCS7D01G284500 chr1D 99.138 116 1 0 1 116 201305164 201305279 7.530000e-50 209.0
24 TraesCS7D01G284500 chr1D 99.138 116 1 0 1 116 223443085 223442970 7.530000e-50 209.0
25 TraesCS7D01G284500 chr2D 92.092 392 25 5 117 504 565306351 565306740 1.410000e-151 547.0
26 TraesCS7D01G284500 chr3B 91.560 391 29 3 117 503 90385645 90386035 3.040000e-148 536.0
27 TraesCS7D01G284500 chr2B 89.822 393 34 5 117 504 82079827 82080218 3.990000e-137 499.0
28 TraesCS7D01G284500 chr6B 89.340 394 32 6 117 505 170871800 170871412 3.110000e-133 486.0
29 TraesCS7D01G284500 chr3A 88.804 393 34 9 117 504 662079473 662079860 2.420000e-129 473.0
30 TraesCS7D01G284500 chr3A 85.366 369 46 7 1549 1913 525290983 525290619 7.020000e-100 375.0
31 TraesCS7D01G284500 chr3A 85.124 363 38 8 1955 2309 525288914 525288560 2.540000e-94 357.0
32 TraesCS7D01G284500 chr6D 88.550 393 40 4 117 504 43532691 43533083 8.700000e-129 472.0
33 TraesCS7D01G284500 chr1B 80.562 463 46 7 2157 2578 550914086 550914545 4.320000e-82 316.0
34 TraesCS7D01G284500 chr1B 89.933 149 15 0 1764 1912 550911890 550912038 7.590000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G284500 chr7D 302022058 302029467 7409 True 13684.000 13684 100.00000 1 7410 1 chr7D.!!$R1 7409
1 TraesCS7D01G284500 chr7A 355689130 355696135 7005 True 2913.825 11055 91.64325 504 7410 4 chr7A.!!$R2 6906
2 TraesCS7D01G284500 chr7B 350449831 350456806 6975 False 2871.300 11034 92.06725 504 7271 4 chr7B.!!$F1 6767
3 TraesCS7D01G284500 chr1D 223441657 223443085 1428 True 366.000 523 95.10450 1 504 2 chr1D.!!$R3 503
4 TraesCS7D01G284500 chr3A 525288560 525290983 2423 True 366.000 375 85.24500 1549 2309 2 chr3A.!!$R1 760
5 TraesCS7D01G284500 chr1B 550911890 550914545 2655 False 254.500 316 85.24750 1764 2578 2 chr1B.!!$F1 814

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 426 0.028902 GGCGGGCGCTACATAAAAAG 59.971 55.000 7.64 0.0 41.60 2.27 F
426 427 0.028902 GCGGGCGCTACATAAAAAGG 59.971 55.000 7.64 0.0 38.26 3.11 F
1376 1382 0.254178 ATCTACCTGCTTGCTGTGGG 59.746 55.000 0.00 0.0 0.00 4.61 F
1464 1470 3.047115 TGTTCTGGTACCAAGGGTGTTA 58.953 45.455 17.11 0.0 36.19 2.41 F
2442 5998 7.860649 ATTGCCCCATTTAATGAATATCAGT 57.139 32.000 6.50 0.0 0.00 3.41 F
3539 7095 2.997897 GTGCAGTCGGTCTCCCCT 60.998 66.667 0.00 0.0 0.00 4.79 F
3732 7288 4.293415 CTGCAAATGTGGAGAAACTTGAC 58.707 43.478 0.00 0.0 45.65 3.18 F
3779 7335 4.780815 TGTGAAGGTTTGTCTCACTTGAT 58.219 39.130 3.39 0.0 33.01 2.57 F
4136 7692 6.495181 GATTCTCATCCAGAGGATAACCTACA 59.505 42.308 0.00 0.0 42.90 2.74 F
6185 9744 0.107654 GGATTCCCAAGGACGGTCAG 60.108 60.000 10.76 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1464 1470 0.402121 GGTTTCTCCTGCCAGGACTT 59.598 55.000 10.05 0.00 40.06 3.01 R
1761 1770 1.354031 TGAGCACCATACCACCAATGT 59.646 47.619 0.00 0.00 0.00 2.71 R
2331 5882 3.118811 CCTCTTCTTGAGCCACTTCTAGG 60.119 52.174 0.00 0.00 41.35 3.02 R
2721 6277 3.928992 CAGCAGCCAGTATTGATATACCG 59.071 47.826 0.00 0.00 37.87 4.02 R
4136 7692 2.738846 GACATGACGCAATCAGAAGTGT 59.261 45.455 0.00 0.00 41.91 3.55 R
5396 8955 0.614697 TCAGGTGATCTTCGCTGGGA 60.615 55.000 0.00 0.00 0.00 4.37 R
5584 9143 0.974383 ACCGTCTAGACAAAGGGTGG 59.026 55.000 22.37 14.96 0.00 4.61 R
6135 9694 4.378770 CGAACATGTCATTTCTTGAGGTGG 60.379 45.833 0.00 0.00 34.17 4.61 R
6209 9768 1.210967 TCCCCTTTTGAAGTCACGTGT 59.789 47.619 16.51 0.00 0.00 4.49 R
7169 11551 0.531974 ACGACATTGGACAGCAACGT 60.532 50.000 0.00 0.00 0.00 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 2.673368 GTCGAGATCACCCACATTGTTC 59.327 50.000 0.00 0.00 0.00 3.18
117 118 2.301583 TCGAGATCACCCACATTGTTCA 59.698 45.455 0.00 0.00 0.00 3.18
118 119 3.073678 CGAGATCACCCACATTGTTCAA 58.926 45.455 0.00 0.00 0.00 2.69
121 122 5.335897 CGAGATCACCCACATTGTTCAAATT 60.336 40.000 0.00 0.00 0.00 1.82
122 123 6.029346 AGATCACCCACATTGTTCAAATTC 57.971 37.500 0.00 0.00 0.00 2.17
123 124 5.776716 AGATCACCCACATTGTTCAAATTCT 59.223 36.000 0.00 0.00 0.00 2.40
124 125 5.867903 TCACCCACATTGTTCAAATTCTT 57.132 34.783 0.00 0.00 0.00 2.52
125 126 5.841810 TCACCCACATTGTTCAAATTCTTC 58.158 37.500 0.00 0.00 0.00 2.87
126 127 5.362143 TCACCCACATTGTTCAAATTCTTCA 59.638 36.000 0.00 0.00 0.00 3.02
127 128 6.047870 CACCCACATTGTTCAAATTCTTCAA 58.952 36.000 0.00 0.00 0.00 2.69
128 129 6.538021 CACCCACATTGTTCAAATTCTTCAAA 59.462 34.615 0.00 0.00 0.00 2.69
129 130 7.227116 CACCCACATTGTTCAAATTCTTCAAAT 59.773 33.333 0.00 0.00 0.00 2.32
130 131 7.774625 ACCCACATTGTTCAAATTCTTCAAATT 59.225 29.630 0.00 0.00 0.00 1.82
131 132 8.623030 CCCACATTGTTCAAATTCTTCAAATTT 58.377 29.630 0.00 0.00 0.00 1.82
132 133 9.440784 CCACATTGTTCAAATTCTTCAAATTTG 57.559 29.630 12.15 12.15 44.65 2.32
133 134 8.949953 CACATTGTTCAAATTCTTCAAATTTGC 58.050 29.630 13.54 6.27 43.60 3.68
134 135 8.675504 ACATTGTTCAAATTCTTCAAATTTGCA 58.324 25.926 13.54 1.37 43.60 4.08
135 136 9.504710 CATTGTTCAAATTCTTCAAATTTGCAA 57.495 25.926 13.54 14.25 43.60 4.08
136 137 9.724839 ATTGTTCAAATTCTTCAAATTTGCAAG 57.275 25.926 13.54 15.92 43.60 4.01
137 138 8.489990 TGTTCAAATTCTTCAAATTTGCAAGA 57.510 26.923 20.02 20.02 43.60 3.02
138 139 9.111613 TGTTCAAATTCTTCAAATTTGCAAGAT 57.888 25.926 22.45 12.97 43.60 2.40
139 140 9.940166 GTTCAAATTCTTCAAATTTGCAAGATT 57.060 25.926 22.45 18.52 43.60 2.40
141 142 9.938670 TCAAATTCTTCAAATTTGCAAGATTTG 57.061 25.926 27.17 27.17 43.60 2.32
142 143 9.176181 CAAATTCTTCAAATTTGCAAGATTTGG 57.824 29.630 27.67 22.38 42.14 3.28
143 144 6.864360 TTCTTCAAATTTGCAAGATTTGGG 57.136 33.333 27.67 23.12 42.14 4.12
144 145 6.172136 TCTTCAAATTTGCAAGATTTGGGA 57.828 33.333 27.67 24.13 42.14 4.37
145 146 6.771573 TCTTCAAATTTGCAAGATTTGGGAT 58.228 32.000 27.67 8.15 42.14 3.85
146 147 7.905265 TCTTCAAATTTGCAAGATTTGGGATA 58.095 30.769 27.67 16.51 42.14 2.59
147 148 8.036575 TCTTCAAATTTGCAAGATTTGGGATAG 58.963 33.333 27.67 22.23 42.14 2.08
148 149 6.642430 TCAAATTTGCAAGATTTGGGATAGG 58.358 36.000 27.67 13.81 42.14 2.57
149 150 6.440010 TCAAATTTGCAAGATTTGGGATAGGA 59.560 34.615 27.67 15.43 42.14 2.94
150 151 7.126115 TCAAATTTGCAAGATTTGGGATAGGAT 59.874 33.333 27.67 6.13 42.14 3.24
151 152 7.441903 AATTTGCAAGATTTGGGATAGGATT 57.558 32.000 0.00 0.00 0.00 3.01
152 153 6.872585 TTTGCAAGATTTGGGATAGGATTT 57.127 33.333 0.00 0.00 0.00 2.17
153 154 5.857471 TGCAAGATTTGGGATAGGATTTG 57.143 39.130 0.00 0.00 0.00 2.32
154 155 5.517924 TGCAAGATTTGGGATAGGATTTGA 58.482 37.500 0.00 0.00 0.00 2.69
155 156 5.595542 TGCAAGATTTGGGATAGGATTTGAG 59.404 40.000 0.00 0.00 0.00 3.02
156 157 5.829924 GCAAGATTTGGGATAGGATTTGAGA 59.170 40.000 0.00 0.00 0.00 3.27
157 158 6.016443 GCAAGATTTGGGATAGGATTTGAGAG 60.016 42.308 0.00 0.00 0.00 3.20
158 159 6.198237 AGATTTGGGATAGGATTTGAGAGG 57.802 41.667 0.00 0.00 0.00 3.69
159 160 4.796110 TTTGGGATAGGATTTGAGAGGG 57.204 45.455 0.00 0.00 0.00 4.30
160 161 2.706350 TGGGATAGGATTTGAGAGGGG 58.294 52.381 0.00 0.00 0.00 4.79
161 162 1.988846 GGGATAGGATTTGAGAGGGGG 59.011 57.143 0.00 0.00 0.00 5.40
162 163 2.429383 GGGATAGGATTTGAGAGGGGGA 60.429 54.545 0.00 0.00 0.00 4.81
163 164 2.909662 GGATAGGATTTGAGAGGGGGAG 59.090 54.545 0.00 0.00 0.00 4.30
164 165 3.440154 GGATAGGATTTGAGAGGGGGAGA 60.440 52.174 0.00 0.00 0.00 3.71
165 166 2.188818 AGGATTTGAGAGGGGGAGAG 57.811 55.000 0.00 0.00 0.00 3.20
166 167 1.653918 AGGATTTGAGAGGGGGAGAGA 59.346 52.381 0.00 0.00 0.00 3.10
167 168 2.046292 GGATTTGAGAGGGGGAGAGAG 58.954 57.143 0.00 0.00 0.00 3.20
168 169 2.628290 GGATTTGAGAGGGGGAGAGAGT 60.628 54.545 0.00 0.00 0.00 3.24
169 170 3.374318 GGATTTGAGAGGGGGAGAGAGTA 60.374 52.174 0.00 0.00 0.00 2.59
170 171 3.390175 TTTGAGAGGGGGAGAGAGTAG 57.610 52.381 0.00 0.00 0.00 2.57
171 172 1.227249 TGAGAGGGGGAGAGAGTAGG 58.773 60.000 0.00 0.00 0.00 3.18
172 173 1.275061 TGAGAGGGGGAGAGAGTAGGA 60.275 57.143 0.00 0.00 0.00 2.94
173 174 1.423921 GAGAGGGGGAGAGAGTAGGAG 59.576 61.905 0.00 0.00 0.00 3.69
174 175 1.011545 AGAGGGGGAGAGAGTAGGAGA 59.988 57.143 0.00 0.00 0.00 3.71
175 176 1.423921 GAGGGGGAGAGAGTAGGAGAG 59.576 61.905 0.00 0.00 0.00 3.20
176 177 0.481128 GGGGGAGAGAGTAGGAGAGG 59.519 65.000 0.00 0.00 0.00 3.69
177 178 0.481128 GGGGAGAGAGTAGGAGAGGG 59.519 65.000 0.00 0.00 0.00 4.30
178 179 0.481128 GGGAGAGAGTAGGAGAGGGG 59.519 65.000 0.00 0.00 0.00 4.79
179 180 0.178973 GGAGAGAGTAGGAGAGGGGC 60.179 65.000 0.00 0.00 0.00 5.80
180 181 0.553819 GAGAGAGTAGGAGAGGGGCA 59.446 60.000 0.00 0.00 0.00 5.36
181 182 1.011595 AGAGAGTAGGAGAGGGGCAA 58.988 55.000 0.00 0.00 0.00 4.52
182 183 1.362932 AGAGAGTAGGAGAGGGGCAAA 59.637 52.381 0.00 0.00 0.00 3.68
183 184 1.760029 GAGAGTAGGAGAGGGGCAAAG 59.240 57.143 0.00 0.00 0.00 2.77
184 185 0.179234 GAGTAGGAGAGGGGCAAAGC 59.821 60.000 0.00 0.00 0.00 3.51
185 186 0.252927 AGTAGGAGAGGGGCAAAGCT 60.253 55.000 0.00 0.00 0.00 3.74
186 187 0.179234 GTAGGAGAGGGGCAAAGCTC 59.821 60.000 0.00 0.00 0.00 4.09
187 188 1.330655 TAGGAGAGGGGCAAAGCTCG 61.331 60.000 0.00 0.00 0.00 5.03
188 189 2.124942 GAGAGGGGCAAAGCTCGG 60.125 66.667 0.00 0.00 0.00 4.63
189 190 3.689002 GAGAGGGGCAAAGCTCGGG 62.689 68.421 0.00 0.00 0.00 5.14
190 191 4.035102 GAGGGGCAAAGCTCGGGT 62.035 66.667 0.00 0.00 0.00 5.28
191 192 3.569200 GAGGGGCAAAGCTCGGGTT 62.569 63.158 0.00 0.00 0.00 4.11
192 193 3.373565 GGGGCAAAGCTCGGGTTG 61.374 66.667 0.00 0.00 0.00 3.77
193 194 3.373565 GGGCAAAGCTCGGGTTGG 61.374 66.667 0.00 0.00 0.00 3.77
194 195 2.282180 GGCAAAGCTCGGGTTGGA 60.282 61.111 0.00 0.00 0.00 3.53
195 196 2.335712 GGCAAAGCTCGGGTTGGAG 61.336 63.158 0.00 0.00 37.11 3.86
196 197 1.600916 GCAAAGCTCGGGTTGGAGT 60.601 57.895 0.00 0.00 36.41 3.85
197 198 1.856265 GCAAAGCTCGGGTTGGAGTG 61.856 60.000 0.00 0.00 36.41 3.51
198 199 0.535102 CAAAGCTCGGGTTGGAGTGT 60.535 55.000 0.00 0.00 36.41 3.55
199 200 0.535102 AAAGCTCGGGTTGGAGTGTG 60.535 55.000 0.00 0.00 36.41 3.82
200 201 1.696097 AAGCTCGGGTTGGAGTGTGT 61.696 55.000 0.00 0.00 36.41 3.72
201 202 1.961277 GCTCGGGTTGGAGTGTGTG 60.961 63.158 0.00 0.00 36.41 3.82
202 203 1.301716 CTCGGGTTGGAGTGTGTGG 60.302 63.158 0.00 0.00 0.00 4.17
203 204 2.281484 CGGGTTGGAGTGTGTGGG 60.281 66.667 0.00 0.00 0.00 4.61
204 205 2.115266 GGGTTGGAGTGTGTGGGG 59.885 66.667 0.00 0.00 0.00 4.96
205 206 2.763645 GGGTTGGAGTGTGTGGGGT 61.764 63.158 0.00 0.00 0.00 4.95
206 207 1.528309 GGTTGGAGTGTGTGGGGTG 60.528 63.158 0.00 0.00 0.00 4.61
207 208 1.528309 GTTGGAGTGTGTGGGGTGG 60.528 63.158 0.00 0.00 0.00 4.61
208 209 2.762554 TTGGAGTGTGTGGGGTGGG 61.763 63.158 0.00 0.00 0.00 4.61
209 210 3.966543 GGAGTGTGTGGGGTGGGG 61.967 72.222 0.00 0.00 0.00 4.96
210 211 3.966543 GAGTGTGTGGGGTGGGGG 61.967 72.222 0.00 0.00 0.00 5.40
250 251 2.787473 CCAAGTGGCTGGATAAGTCA 57.213 50.000 0.00 0.00 38.51 3.41
255 256 2.768253 TGGCTGGATAAGTCACAGTG 57.232 50.000 0.00 0.00 34.88 3.66
256 257 1.339055 TGGCTGGATAAGTCACAGTGC 60.339 52.381 0.00 0.00 34.88 4.40
257 258 1.339055 GGCTGGATAAGTCACAGTGCA 60.339 52.381 0.00 0.00 34.79 4.57
258 259 2.005451 GCTGGATAAGTCACAGTGCAG 58.995 52.381 0.00 0.00 34.79 4.41
259 260 2.005451 CTGGATAAGTCACAGTGCAGC 58.995 52.381 0.00 0.00 0.00 5.25
260 261 1.002366 GGATAAGTCACAGTGCAGCG 58.998 55.000 0.00 0.00 0.00 5.18
261 262 0.371645 GATAAGTCACAGTGCAGCGC 59.628 55.000 0.00 0.00 0.00 5.92
262 263 1.021390 ATAAGTCACAGTGCAGCGCC 61.021 55.000 2.29 0.00 0.00 6.53
263 264 2.099652 TAAGTCACAGTGCAGCGCCT 62.100 55.000 2.29 0.00 0.00 5.52
264 265 2.048222 GTCACAGTGCAGCGCCTA 60.048 61.111 2.29 0.00 0.00 3.93
265 266 1.667830 GTCACAGTGCAGCGCCTAA 60.668 57.895 2.29 0.00 0.00 2.69
266 267 1.374631 TCACAGTGCAGCGCCTAAG 60.375 57.895 2.29 0.00 0.00 2.18
267 268 2.743928 ACAGTGCAGCGCCTAAGC 60.744 61.111 2.29 3.99 37.41 3.09
285 286 4.201951 GCTAGGCGCTGCACTTTA 57.798 55.556 7.64 0.00 35.14 1.85
286 287 2.466867 GCTAGGCGCTGCACTTTAA 58.533 52.632 7.64 0.00 35.14 1.52
287 288 0.802494 GCTAGGCGCTGCACTTTAAA 59.198 50.000 7.64 0.00 35.14 1.52
288 289 1.401905 GCTAGGCGCTGCACTTTAAAT 59.598 47.619 7.64 0.00 35.14 1.40
289 290 2.612212 GCTAGGCGCTGCACTTTAAATA 59.388 45.455 7.64 0.00 35.14 1.40
290 291 3.251004 GCTAGGCGCTGCACTTTAAATAT 59.749 43.478 7.64 0.00 35.14 1.28
291 292 3.698029 AGGCGCTGCACTTTAAATATG 57.302 42.857 7.64 0.00 0.00 1.78
292 293 3.016736 AGGCGCTGCACTTTAAATATGT 58.983 40.909 7.64 0.00 0.00 2.29
293 294 3.108144 GGCGCTGCACTTTAAATATGTG 58.892 45.455 7.64 2.53 35.56 3.21
294 295 3.108144 GCGCTGCACTTTAAATATGTGG 58.892 45.455 0.00 1.21 33.65 4.17
295 296 3.108144 CGCTGCACTTTAAATATGTGGC 58.892 45.455 0.00 7.87 33.65 5.01
296 297 3.108144 GCTGCACTTTAAATATGTGGCG 58.892 45.455 7.84 0.00 33.65 5.69
297 298 3.108144 CTGCACTTTAAATATGTGGCGC 58.892 45.455 0.00 0.00 33.65 6.53
298 299 2.752354 TGCACTTTAAATATGTGGCGCT 59.248 40.909 7.64 0.00 33.65 5.92
299 300 3.942115 TGCACTTTAAATATGTGGCGCTA 59.058 39.130 7.64 0.00 33.65 4.26
300 301 4.035091 TGCACTTTAAATATGTGGCGCTAG 59.965 41.667 7.64 0.00 33.65 3.42
301 302 4.527564 CACTTTAAATATGTGGCGCTAGC 58.472 43.478 7.64 4.06 44.18 3.42
302 303 4.273480 CACTTTAAATATGTGGCGCTAGCT 59.727 41.667 13.93 0.00 44.37 3.32
303 304 4.881850 ACTTTAAATATGTGGCGCTAGCTT 59.118 37.500 13.93 0.00 44.37 3.74
304 305 6.018262 CACTTTAAATATGTGGCGCTAGCTTA 60.018 38.462 13.93 0.00 44.37 3.09
305 306 6.202954 ACTTTAAATATGTGGCGCTAGCTTAG 59.797 38.462 13.93 0.00 44.37 2.18
306 307 4.336889 AAATATGTGGCGCTAGCTTAGA 57.663 40.909 13.93 0.00 44.37 2.10
307 308 3.584406 ATATGTGGCGCTAGCTTAGAG 57.416 47.619 13.93 0.00 44.37 2.43
308 309 0.390860 ATGTGGCGCTAGCTTAGAGG 59.609 55.000 13.93 0.00 44.37 3.69
312 313 2.725008 CGCTAGCTTAGAGGCGCT 59.275 61.111 13.93 0.00 41.08 5.92
313 314 1.950007 CGCTAGCTTAGAGGCGCTA 59.050 57.895 13.93 0.00 41.08 4.26
314 315 0.386226 CGCTAGCTTAGAGGCGCTAC 60.386 60.000 13.93 1.20 41.08 3.58
315 316 0.669077 GCTAGCTTAGAGGCGCTACA 59.331 55.000 7.64 0.00 37.68 2.74
316 317 1.600912 GCTAGCTTAGAGGCGCTACAC 60.601 57.143 7.64 0.00 37.68 2.90
317 318 1.950909 CTAGCTTAGAGGCGCTACACT 59.049 52.381 7.64 4.41 37.68 3.55
318 319 0.457851 AGCTTAGAGGCGCTACACTG 59.542 55.000 7.64 0.00 34.11 3.66
319 320 1.148759 GCTTAGAGGCGCTACACTGC 61.149 60.000 7.64 2.03 0.00 4.40
320 321 0.457851 CTTAGAGGCGCTACACTGCT 59.542 55.000 7.64 0.00 0.00 4.24
321 322 0.173481 TTAGAGGCGCTACACTGCTG 59.827 55.000 7.64 0.00 0.00 4.41
322 323 1.667154 TAGAGGCGCTACACTGCTGG 61.667 60.000 7.64 0.00 0.00 4.85
323 324 4.087892 AGGCGCTACACTGCTGGG 62.088 66.667 7.64 0.00 0.00 4.45
324 325 4.394712 GGCGCTACACTGCTGGGT 62.395 66.667 7.64 3.26 0.00 4.51
325 326 3.121030 GCGCTACACTGCTGGGTG 61.121 66.667 9.01 6.15 42.34 4.61
326 327 3.121030 CGCTACACTGCTGGGTGC 61.121 66.667 9.01 9.20 40.52 5.01
327 328 3.121030 GCTACACTGCTGGGTGCG 61.121 66.667 9.01 0.86 46.63 5.34
350 351 2.284625 AGGGACTGCCACGATGGA 60.285 61.111 8.04 0.00 37.07 3.41
351 352 2.125106 GGGACTGCCACGATGGAC 60.125 66.667 8.04 1.29 40.96 4.02
352 353 2.660064 GGGACTGCCACGATGGACT 61.660 63.158 8.04 0.00 40.96 3.85
353 354 1.448540 GGACTGCCACGATGGACTG 60.449 63.158 8.04 6.19 40.96 3.51
354 355 1.448540 GACTGCCACGATGGACTGG 60.449 63.158 8.04 0.00 40.96 4.00
357 358 4.760047 GCCACGATGGACTGGCGT 62.760 66.667 8.04 0.00 43.56 5.68
359 360 3.490759 CACGATGGACTGGCGTGC 61.491 66.667 0.00 0.00 46.86 5.34
360 361 4.002506 ACGATGGACTGGCGTGCA 62.003 61.111 6.21 6.21 45.77 4.57
361 362 2.741985 CGATGGACTGGCGTGCAA 60.742 61.111 7.59 0.00 44.84 4.08
362 363 2.870372 GATGGACTGGCGTGCAAC 59.130 61.111 7.59 2.48 44.84 4.17
373 374 4.643387 GTGCAACGCCCCAGAGGT 62.643 66.667 0.00 0.00 38.26 3.85
374 375 2.925706 TGCAACGCCCCAGAGGTA 60.926 61.111 0.00 0.00 38.26 3.08
375 376 2.349755 GCAACGCCCCAGAGGTAA 59.650 61.111 0.00 0.00 38.26 2.85
376 377 1.745489 GCAACGCCCCAGAGGTAAG 60.745 63.158 0.00 0.00 38.26 2.34
377 378 1.745489 CAACGCCCCAGAGGTAAGC 60.745 63.158 0.00 0.00 38.26 3.09
380 381 4.858680 GCCCCAGAGGTAAGCGCC 62.859 72.222 2.29 0.00 38.26 6.53
381 382 4.530857 CCCCAGAGGTAAGCGCCG 62.531 72.222 2.29 0.00 0.00 6.46
383 384 4.451150 CCAGAGGTAAGCGCCGCA 62.451 66.667 13.36 0.00 0.00 5.69
384 385 3.188786 CAGAGGTAAGCGCCGCAC 61.189 66.667 13.36 0.32 0.00 5.34
385 386 4.452733 AGAGGTAAGCGCCGCACC 62.453 66.667 13.36 11.65 0.00 5.01
386 387 4.752879 GAGGTAAGCGCCGCACCA 62.753 66.667 19.18 0.00 34.62 4.17
387 388 4.096003 AGGTAAGCGCCGCACCAT 62.096 61.111 19.18 3.59 34.62 3.55
388 389 2.202960 GGTAAGCGCCGCACCATA 60.203 61.111 13.36 0.00 32.32 2.74
389 390 2.244651 GGTAAGCGCCGCACCATAG 61.245 63.158 13.36 0.00 32.32 2.23
390 391 2.108157 TAAGCGCCGCACCATAGG 59.892 61.111 13.36 0.00 0.00 2.57
391 392 3.454587 TAAGCGCCGCACCATAGGG 62.455 63.158 13.36 0.00 41.29 3.53
401 402 3.309582 CCATAGGGTGTGACGCCT 58.690 61.111 15.60 3.86 33.98 5.52
402 403 1.153369 CCATAGGGTGTGACGCCTG 60.153 63.158 15.60 5.54 33.98 4.85
403 404 1.815421 CATAGGGTGTGACGCCTGC 60.815 63.158 15.60 0.00 33.98 4.85
404 405 3.371097 ATAGGGTGTGACGCCTGCG 62.371 63.158 15.60 10.40 46.03 5.18
422 423 2.585153 TGGCGGGCGCTACATAAA 59.415 55.556 7.64 0.00 41.60 1.40
423 424 1.078356 TGGCGGGCGCTACATAAAA 60.078 52.632 7.64 0.00 41.60 1.52
424 425 0.677098 TGGCGGGCGCTACATAAAAA 60.677 50.000 7.64 0.00 41.60 1.94
425 426 0.028902 GGCGGGCGCTACATAAAAAG 59.971 55.000 7.64 0.00 41.60 2.27
426 427 0.028902 GCGGGCGCTACATAAAAAGG 59.971 55.000 7.64 0.00 38.26 3.11
427 428 1.375551 CGGGCGCTACATAAAAAGGT 58.624 50.000 7.64 0.00 0.00 3.50
428 429 1.329599 CGGGCGCTACATAAAAAGGTC 59.670 52.381 7.64 0.00 0.00 3.85
429 430 2.361789 GGGCGCTACATAAAAAGGTCA 58.638 47.619 7.64 0.00 0.00 4.02
430 431 2.949644 GGGCGCTACATAAAAAGGTCAT 59.050 45.455 7.64 0.00 0.00 3.06
431 432 3.003378 GGGCGCTACATAAAAAGGTCATC 59.997 47.826 7.64 0.00 0.00 2.92
432 433 3.303132 GGCGCTACATAAAAAGGTCATCG 60.303 47.826 7.64 0.00 0.00 3.84
433 434 3.303132 GCGCTACATAAAAAGGTCATCGG 60.303 47.826 0.00 0.00 0.00 4.18
434 435 3.869246 CGCTACATAAAAAGGTCATCGGT 59.131 43.478 0.00 0.00 0.00 4.69
435 436 4.260212 CGCTACATAAAAAGGTCATCGGTG 60.260 45.833 0.00 0.00 0.00 4.94
436 437 4.634443 GCTACATAAAAAGGTCATCGGTGT 59.366 41.667 0.00 0.00 0.00 4.16
437 438 5.447279 GCTACATAAAAAGGTCATCGGTGTG 60.447 44.000 0.00 0.00 0.00 3.82
438 439 4.647611 ACATAAAAAGGTCATCGGTGTGA 58.352 39.130 0.00 0.00 0.00 3.58
439 440 5.067273 ACATAAAAAGGTCATCGGTGTGAA 58.933 37.500 0.00 0.00 0.00 3.18
440 441 5.533154 ACATAAAAAGGTCATCGGTGTGAAA 59.467 36.000 0.00 0.00 0.00 2.69
441 442 4.568152 AAAAAGGTCATCGGTGTGAAAG 57.432 40.909 0.00 0.00 0.00 2.62
442 443 2.930826 AAGGTCATCGGTGTGAAAGT 57.069 45.000 0.00 0.00 0.00 2.66
443 444 2.930826 AGGTCATCGGTGTGAAAGTT 57.069 45.000 0.00 0.00 0.00 2.66
444 445 3.208747 AGGTCATCGGTGTGAAAGTTT 57.791 42.857 0.00 0.00 0.00 2.66
445 446 3.139077 AGGTCATCGGTGTGAAAGTTTC 58.861 45.455 8.75 8.75 0.00 2.78
446 447 2.875933 GGTCATCGGTGTGAAAGTTTCA 59.124 45.455 14.35 14.35 37.33 2.69
454 455 3.487576 TGAAAGTTTCACGGGCAGT 57.512 47.368 14.35 0.00 34.08 4.40
455 456 1.757682 TGAAAGTTTCACGGGCAGTT 58.242 45.000 14.35 0.00 34.08 3.16
456 457 1.673920 TGAAAGTTTCACGGGCAGTTC 59.326 47.619 14.35 0.00 34.08 3.01
457 458 1.673920 GAAAGTTTCACGGGCAGTTCA 59.326 47.619 10.81 0.00 0.00 3.18
458 459 1.981256 AAGTTTCACGGGCAGTTCAT 58.019 45.000 0.00 0.00 0.00 2.57
459 460 1.981256 AGTTTCACGGGCAGTTCATT 58.019 45.000 0.00 0.00 0.00 2.57
460 461 1.880027 AGTTTCACGGGCAGTTCATTC 59.120 47.619 0.00 0.00 0.00 2.67
461 462 1.880027 GTTTCACGGGCAGTTCATTCT 59.120 47.619 0.00 0.00 0.00 2.40
462 463 1.522668 TTCACGGGCAGTTCATTCTG 58.477 50.000 0.00 0.00 38.35 3.02
463 464 0.396435 TCACGGGCAGTTCATTCTGT 59.604 50.000 0.00 0.00 37.70 3.41
464 465 0.518636 CACGGGCAGTTCATTCTGTG 59.481 55.000 0.00 0.00 37.70 3.66
465 466 0.396435 ACGGGCAGTTCATTCTGTGA 59.604 50.000 0.00 0.00 37.70 3.58
466 467 1.202758 ACGGGCAGTTCATTCTGTGAA 60.203 47.619 0.00 0.00 44.36 3.18
478 479 6.182039 TCATTCTGTGAATTGATTTCGTCC 57.818 37.500 0.00 0.00 37.13 4.79
479 480 4.661993 TTCTGTGAATTGATTTCGTCCG 57.338 40.909 0.00 0.00 37.13 4.79
480 481 3.920446 TCTGTGAATTGATTTCGTCCGA 58.080 40.909 0.00 0.00 37.13 4.55
481 482 4.311606 TCTGTGAATTGATTTCGTCCGAA 58.688 39.130 0.00 0.00 37.13 4.30
482 483 4.388773 TCTGTGAATTGATTTCGTCCGAAG 59.611 41.667 2.12 0.00 37.13 3.79
483 484 3.435327 TGTGAATTGATTTCGTCCGAAGG 59.565 43.478 2.12 0.00 43.56 3.46
484 485 3.435671 GTGAATTGATTTCGTCCGAAGGT 59.564 43.478 2.12 0.00 42.98 3.50
485 486 4.069304 TGAATTGATTTCGTCCGAAGGTT 58.931 39.130 2.12 0.00 42.98 3.50
486 487 5.121142 GTGAATTGATTTCGTCCGAAGGTTA 59.879 40.000 2.12 0.00 42.98 2.85
487 488 5.701750 TGAATTGATTTCGTCCGAAGGTTAA 59.298 36.000 2.12 0.63 42.98 2.01
488 489 6.205076 TGAATTGATTTCGTCCGAAGGTTAAA 59.795 34.615 2.12 0.00 42.98 1.52
489 490 7.255173 TGAATTGATTTCGTCCGAAGGTTAAAA 60.255 33.333 2.12 0.00 42.98 1.52
502 503 7.068955 CCGAAGGTTAAAATTGTCAAATTTGC 58.931 34.615 13.54 9.16 43.29 3.68
514 515 1.472480 CAAATTTGCCCCTACGTCCAG 59.528 52.381 5.01 0.00 0.00 3.86
528 529 2.224159 TCCAGCTCCGGAAAGGCTT 61.224 57.895 13.65 0.00 40.77 4.35
818 824 1.460255 CCAGGCAGGGTGAAAAGGA 59.540 57.895 0.00 0.00 0.00 3.36
1053 1059 7.449247 GCAACCCTAGATCTTAGAAATCTCAT 58.551 38.462 0.00 0.00 35.20 2.90
1072 1078 4.211125 TCATTAGTCTCTCTACCTGCTGG 58.789 47.826 8.29 8.29 39.83 4.85
1218 1224 4.367023 TTCTCGCCGTTCGGGTGG 62.367 66.667 13.16 2.59 46.77 4.61
1376 1382 0.254178 ATCTACCTGCTTGCTGTGGG 59.746 55.000 0.00 0.00 0.00 4.61
1464 1470 3.047115 TGTTCTGGTACCAAGGGTGTTA 58.953 45.455 17.11 0.00 36.19 2.41
2439 5995 8.370182 AGTCAATTGCCCCATTTAATGAATATC 58.630 33.333 6.50 0.00 0.00 1.63
2440 5996 8.149647 GTCAATTGCCCCATTTAATGAATATCA 58.850 33.333 6.50 0.00 0.00 2.15
2441 5997 8.369424 TCAATTGCCCCATTTAATGAATATCAG 58.631 33.333 6.50 0.00 0.00 2.90
2442 5998 7.860649 ATTGCCCCATTTAATGAATATCAGT 57.139 32.000 6.50 0.00 0.00 3.41
2721 6277 4.483311 CTCTTGAAGCTGCTGATTTTTCC 58.517 43.478 1.35 0.00 0.00 3.13
2902 6458 6.213600 GGATAAGCTAAATATCCCAGACAGGA 59.786 42.308 10.71 0.00 41.95 3.86
3096 6652 3.373439 TGTTGAGCAATGCAAACAAAACC 59.627 39.130 19.47 7.58 35.54 3.27
3539 7095 2.997897 GTGCAGTCGGTCTCCCCT 60.998 66.667 0.00 0.00 0.00 4.79
3732 7288 4.293415 CTGCAAATGTGGAGAAACTTGAC 58.707 43.478 0.00 0.00 45.65 3.18
3779 7335 4.780815 TGTGAAGGTTTGTCTCACTTGAT 58.219 39.130 3.39 0.00 33.01 2.57
4136 7692 6.495181 GATTCTCATCCAGAGGATAACCTACA 59.505 42.308 0.00 0.00 42.90 2.74
5162 8721 8.190784 GCACTGCAGGTAAATTTGAGTTAATAT 58.809 33.333 19.93 0.00 0.00 1.28
5163 8722 9.507280 CACTGCAGGTAAATTTGAGTTAATATG 57.493 33.333 19.93 0.00 0.00 1.78
5396 8955 9.884465 CTGAAAATTCAAATAGTTCTCGTTCTT 57.116 29.630 0.00 0.00 36.64 2.52
5584 9143 7.604545 AGGATGAGAAACAAAAGTAGCTTCTAC 59.395 37.037 0.00 0.00 0.00 2.59
6135 9694 0.907230 AGGAGCCCACCTCTGAGAAC 60.907 60.000 6.17 0.00 40.57 3.01
6185 9744 0.107654 GGATTCCCAAGGACGGTCAG 60.108 60.000 10.76 0.00 0.00 3.51
6207 9766 1.521681 CTCGAGAATTCCACCGCCC 60.522 63.158 6.58 0.00 0.00 6.13
6208 9767 2.238847 CTCGAGAATTCCACCGCCCA 62.239 60.000 6.58 0.00 0.00 5.36
6209 9768 1.376683 CGAGAATTCCACCGCCCAA 60.377 57.895 0.65 0.00 0.00 4.12
6447 10009 2.597455 AGCTGGTTGTGTATTTGCCTT 58.403 42.857 0.00 0.00 0.00 4.35
6498 10060 6.039717 TCCTTGAGTTTTGATTGAACTGGAAG 59.960 38.462 0.00 0.00 37.46 3.46
6503 10065 2.879103 TGATTGAACTGGAAGGGACC 57.121 50.000 0.00 0.00 39.30 4.46
6524 10086 4.756642 ACCGTACTGCAAATCCATGATATG 59.243 41.667 0.00 0.00 0.00 1.78
6569 10131 4.142600 GGATGTCTGTTCAAGCCACATAAC 60.143 45.833 0.00 0.00 0.00 1.89
6790 10363 4.380841 TCAATCAATTGAAGCATCCTGC 57.619 40.909 13.09 0.00 43.26 4.85
6791 10364 3.764972 TCAATCAATTGAAGCATCCTGCA 59.235 39.130 13.09 0.00 42.87 4.41
6792 10365 4.404394 TCAATCAATTGAAGCATCCTGCAT 59.596 37.500 13.09 0.00 42.87 3.96
6793 10366 4.745125 CAATCAATTGAAGCATCCTGCATC 59.255 41.667 13.09 0.00 42.25 3.91
6794 10367 6.248719 CAATCAATTGAAGCATCCTGCATCC 61.249 44.000 13.09 0.00 42.25 3.51
6897 10597 2.824936 CACATATTTGGCCACCAGAACA 59.175 45.455 3.88 0.00 33.81 3.18
6920 10621 8.558973 ACAAGTTCTGGATATTTCTTCTTCAG 57.441 34.615 0.00 0.00 0.00 3.02
6926 10627 7.106239 TCTGGATATTTCTTCTTCAGGAACAC 58.894 38.462 0.00 0.00 0.00 3.32
6943 10644 3.153369 ACACTGACACATATTTGGCCA 57.847 42.857 0.00 0.00 0.00 5.36
6944 10645 2.819608 ACACTGACACATATTTGGCCAC 59.180 45.455 3.88 0.00 0.00 5.01
6945 10646 2.164219 CACTGACACATATTTGGCCACC 59.836 50.000 3.88 0.00 0.00 4.61
6946 10647 2.224992 ACTGACACATATTTGGCCACCA 60.225 45.455 3.88 0.00 0.00 4.17
6947 10648 2.424601 CTGACACATATTTGGCCACCAG 59.575 50.000 3.88 0.00 33.81 4.00
6948 10649 2.040947 TGACACATATTTGGCCACCAGA 59.959 45.455 3.88 0.00 33.81 3.86
6949 10650 3.088532 GACACATATTTGGCCACCAGAA 58.911 45.455 3.88 0.00 33.81 3.02
6950 10651 2.825532 ACACATATTTGGCCACCAGAAC 59.174 45.455 3.88 0.00 33.81 3.01
6951 10652 2.824936 CACATATTTGGCCACCAGAACA 59.175 45.455 3.88 0.00 33.81 3.18
6953 10654 3.511146 ACATATTTGGCCACCAGAACAAG 59.489 43.478 3.88 0.00 33.81 3.16
6954 10655 2.086610 ATTTGGCCACCAGAACAAGT 57.913 45.000 3.88 0.00 33.81 3.16
6955 10656 1.859302 TTTGGCCACCAGAACAAGTT 58.141 45.000 3.88 0.00 33.81 2.66
6956 10657 1.398692 TTGGCCACCAGAACAAGTTC 58.601 50.000 3.88 4.82 39.78 3.01
7011 10875 5.818678 AAGTACAAACTGTGGTAGATGGA 57.181 39.130 0.00 0.00 35.62 3.41
7038 10902 0.863799 CATCTCACGATTGCCATCCG 59.136 55.000 0.00 0.00 0.00 4.18
7043 10907 0.374758 CACGATTGCCATCCGTCAAG 59.625 55.000 0.00 0.00 33.96 3.02
7046 10910 1.740380 CGATTGCCATCCGTCAAGAGT 60.740 52.381 0.00 0.00 0.00 3.24
7097 11322 8.791327 AATTTCAAACCCCAAATGCTTAATAG 57.209 30.769 0.00 0.00 0.00 1.73
7118 11474 5.582689 AGCTGCACTATTAATTCAAACCC 57.417 39.130 1.02 0.00 0.00 4.11
7144 11505 9.369904 CCAAATGCTTAATAACTGCACTATTTT 57.630 29.630 2.46 0.00 39.63 1.82
7169 11551 4.111016 CGAGCGCACCCTCACGTA 62.111 66.667 11.47 0.00 0.00 3.57
7170 11552 2.506438 GAGCGCACCCTCACGTAC 60.506 66.667 11.47 0.00 0.00 3.67
7171 11553 4.415332 AGCGCACCCTCACGTACG 62.415 66.667 15.01 15.01 0.00 3.67
7172 11554 4.712425 GCGCACCCTCACGTACGT 62.712 66.667 16.72 16.72 0.00 3.57
7225 11608 3.025866 CCGCGTGGTACTAGTGTTC 57.974 57.895 6.91 0.00 0.00 3.18
7271 11654 5.195940 AGGATTAACTACATGCATGTGCTT 58.804 37.500 36.72 27.85 41.89 3.91
7300 11713 7.314393 TGAAAAGCTACAACTTTTTAAACGGT 58.686 30.769 3.97 0.00 46.99 4.83
7301 11714 7.813627 TGAAAAGCTACAACTTTTTAAACGGTT 59.186 29.630 3.97 0.00 46.99 4.44
7302 11715 9.288124 GAAAAGCTACAACTTTTTAAACGGTTA 57.712 29.630 3.97 0.00 46.99 2.85
7304 11717 8.791355 AAGCTACAACTTTTTAAACGGTTATG 57.209 30.769 0.00 0.00 0.00 1.90
7321 11735 9.078452 AACGGTTATGGAACAAAGATCCGTTTT 62.078 37.037 11.41 0.00 46.79 2.43
7331 11745 6.677913 ACAAAGATCCGTTTTCATTGTTAGG 58.322 36.000 0.00 0.00 32.76 2.69
7359 11773 4.622313 TCGCGACGAGCTCTTTAAAATTAA 59.378 37.500 12.85 0.00 45.59 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 9.176181 CCAAATCTTGCAAATTTGAAGAATTTG 57.824 29.630 28.95 24.78 43.60 2.32
117 118 8.354426 CCCAAATCTTGCAAATTTGAAGAATTT 58.646 29.630 28.95 16.07 43.60 1.82
118 119 7.720515 TCCCAAATCTTGCAAATTTGAAGAATT 59.279 29.630 28.95 19.63 43.60 2.17
121 122 6.172136 TCCCAAATCTTGCAAATTTGAAGA 57.828 33.333 28.95 22.94 43.60 2.87
122 123 7.279313 CCTATCCCAAATCTTGCAAATTTGAAG 59.721 37.037 28.95 23.21 43.60 3.02
123 124 7.038445 TCCTATCCCAAATCTTGCAAATTTGAA 60.038 33.333 28.95 21.97 43.60 2.69
124 125 6.440010 TCCTATCCCAAATCTTGCAAATTTGA 59.560 34.615 28.95 19.29 43.60 2.69
125 126 6.642430 TCCTATCCCAAATCTTGCAAATTTG 58.358 36.000 24.72 24.72 41.60 2.32
126 127 6.872585 TCCTATCCCAAATCTTGCAAATTT 57.127 33.333 0.00 7.12 0.00 1.82
127 128 7.441903 AATCCTATCCCAAATCTTGCAAATT 57.558 32.000 0.00 0.89 0.00 1.82
128 129 7.126115 TCAAATCCTATCCCAAATCTTGCAAAT 59.874 33.333 0.00 0.00 0.00 2.32
129 130 6.440010 TCAAATCCTATCCCAAATCTTGCAAA 59.560 34.615 0.00 0.00 0.00 3.68
130 131 5.957168 TCAAATCCTATCCCAAATCTTGCAA 59.043 36.000 0.00 0.00 0.00 4.08
131 132 5.517924 TCAAATCCTATCCCAAATCTTGCA 58.482 37.500 0.00 0.00 0.00 4.08
132 133 5.829924 TCTCAAATCCTATCCCAAATCTTGC 59.170 40.000 0.00 0.00 0.00 4.01
133 134 6.489361 CCTCTCAAATCCTATCCCAAATCTTG 59.511 42.308 0.00 0.00 0.00 3.02
134 135 6.411320 CCCTCTCAAATCCTATCCCAAATCTT 60.411 42.308 0.00 0.00 0.00 2.40
135 136 5.074239 CCCTCTCAAATCCTATCCCAAATCT 59.926 44.000 0.00 0.00 0.00 2.40
136 137 5.320277 CCCTCTCAAATCCTATCCCAAATC 58.680 45.833 0.00 0.00 0.00 2.17
137 138 4.106987 CCCCTCTCAAATCCTATCCCAAAT 59.893 45.833 0.00 0.00 0.00 2.32
138 139 3.463329 CCCCTCTCAAATCCTATCCCAAA 59.537 47.826 0.00 0.00 0.00 3.28
139 140 3.056080 CCCCTCTCAAATCCTATCCCAA 58.944 50.000 0.00 0.00 0.00 4.12
140 141 2.700225 CCCCCTCTCAAATCCTATCCCA 60.700 54.545 0.00 0.00 0.00 4.37
141 142 1.988846 CCCCCTCTCAAATCCTATCCC 59.011 57.143 0.00 0.00 0.00 3.85
142 143 2.909662 CTCCCCCTCTCAAATCCTATCC 59.090 54.545 0.00 0.00 0.00 2.59
143 144 3.837731 CTCTCCCCCTCTCAAATCCTATC 59.162 52.174 0.00 0.00 0.00 2.08
144 145 3.472848 TCTCTCCCCCTCTCAAATCCTAT 59.527 47.826 0.00 0.00 0.00 2.57
145 146 2.865809 TCTCTCCCCCTCTCAAATCCTA 59.134 50.000 0.00 0.00 0.00 2.94
146 147 1.653918 TCTCTCCCCCTCTCAAATCCT 59.346 52.381 0.00 0.00 0.00 3.24
147 148 2.046292 CTCTCTCCCCCTCTCAAATCC 58.954 57.143 0.00 0.00 0.00 3.01
148 149 2.758130 ACTCTCTCCCCCTCTCAAATC 58.242 52.381 0.00 0.00 0.00 2.17
149 150 2.959421 ACTCTCTCCCCCTCTCAAAT 57.041 50.000 0.00 0.00 0.00 2.32
150 151 2.023888 CCTACTCTCTCCCCCTCTCAAA 60.024 54.545 0.00 0.00 0.00 2.69
151 152 1.571457 CCTACTCTCTCCCCCTCTCAA 59.429 57.143 0.00 0.00 0.00 3.02
152 153 1.227249 CCTACTCTCTCCCCCTCTCA 58.773 60.000 0.00 0.00 0.00 3.27
153 154 1.423921 CTCCTACTCTCTCCCCCTCTC 59.576 61.905 0.00 0.00 0.00 3.20
154 155 1.011545 TCTCCTACTCTCTCCCCCTCT 59.988 57.143 0.00 0.00 0.00 3.69
155 156 1.423921 CTCTCCTACTCTCTCCCCCTC 59.576 61.905 0.00 0.00 0.00 4.30
156 157 1.529744 CTCTCCTACTCTCTCCCCCT 58.470 60.000 0.00 0.00 0.00 4.79
157 158 0.481128 CCTCTCCTACTCTCTCCCCC 59.519 65.000 0.00 0.00 0.00 5.40
158 159 0.481128 CCCTCTCCTACTCTCTCCCC 59.519 65.000 0.00 0.00 0.00 4.81
159 160 0.481128 CCCCTCTCCTACTCTCTCCC 59.519 65.000 0.00 0.00 0.00 4.30
160 161 0.178973 GCCCCTCTCCTACTCTCTCC 60.179 65.000 0.00 0.00 0.00 3.71
161 162 0.553819 TGCCCCTCTCCTACTCTCTC 59.446 60.000 0.00 0.00 0.00 3.20
162 163 1.011595 TTGCCCCTCTCCTACTCTCT 58.988 55.000 0.00 0.00 0.00 3.10
163 164 1.760029 CTTTGCCCCTCTCCTACTCTC 59.240 57.143 0.00 0.00 0.00 3.20
164 165 1.872773 CTTTGCCCCTCTCCTACTCT 58.127 55.000 0.00 0.00 0.00 3.24
165 166 0.179234 GCTTTGCCCCTCTCCTACTC 59.821 60.000 0.00 0.00 0.00 2.59
166 167 0.252927 AGCTTTGCCCCTCTCCTACT 60.253 55.000 0.00 0.00 0.00 2.57
167 168 0.179234 GAGCTTTGCCCCTCTCCTAC 59.821 60.000 0.00 0.00 0.00 3.18
168 169 1.330655 CGAGCTTTGCCCCTCTCCTA 61.331 60.000 0.00 0.00 0.00 2.94
169 170 2.664081 CGAGCTTTGCCCCTCTCCT 61.664 63.158 0.00 0.00 0.00 3.69
170 171 2.124942 CGAGCTTTGCCCCTCTCC 60.125 66.667 0.00 0.00 0.00 3.71
171 172 2.124942 CCGAGCTTTGCCCCTCTC 60.125 66.667 0.00 0.00 0.00 3.20
172 173 3.721706 CCCGAGCTTTGCCCCTCT 61.722 66.667 0.00 0.00 0.00 3.69
173 174 3.569200 AACCCGAGCTTTGCCCCTC 62.569 63.158 0.00 0.00 0.00 4.30
174 175 3.580319 AACCCGAGCTTTGCCCCT 61.580 61.111 0.00 0.00 0.00 4.79
175 176 3.373565 CAACCCGAGCTTTGCCCC 61.374 66.667 0.00 0.00 0.00 5.80
176 177 3.373565 CCAACCCGAGCTTTGCCC 61.374 66.667 0.00 0.00 0.00 5.36
177 178 2.282180 TCCAACCCGAGCTTTGCC 60.282 61.111 0.00 0.00 0.00 4.52
178 179 1.600916 ACTCCAACCCGAGCTTTGC 60.601 57.895 0.00 0.00 32.79 3.68
179 180 0.535102 ACACTCCAACCCGAGCTTTG 60.535 55.000 0.00 0.00 32.79 2.77
180 181 0.535102 CACACTCCAACCCGAGCTTT 60.535 55.000 0.00 0.00 32.79 3.51
181 182 1.071471 CACACTCCAACCCGAGCTT 59.929 57.895 0.00 0.00 32.79 3.74
182 183 2.140792 ACACACTCCAACCCGAGCT 61.141 57.895 0.00 0.00 32.79 4.09
183 184 1.961277 CACACACTCCAACCCGAGC 60.961 63.158 0.00 0.00 32.79 5.03
184 185 1.301716 CCACACACTCCAACCCGAG 60.302 63.158 0.00 0.00 35.88 4.63
185 186 2.813726 CCCACACACTCCAACCCGA 61.814 63.158 0.00 0.00 0.00 5.14
186 187 2.281484 CCCACACACTCCAACCCG 60.281 66.667 0.00 0.00 0.00 5.28
187 188 2.115266 CCCCACACACTCCAACCC 59.885 66.667 0.00 0.00 0.00 4.11
188 189 1.528309 CACCCCACACACTCCAACC 60.528 63.158 0.00 0.00 0.00 3.77
189 190 1.528309 CCACCCCACACACTCCAAC 60.528 63.158 0.00 0.00 0.00 3.77
190 191 2.762554 CCCACCCCACACACTCCAA 61.763 63.158 0.00 0.00 0.00 3.53
191 192 3.174987 CCCACCCCACACACTCCA 61.175 66.667 0.00 0.00 0.00 3.86
192 193 3.966543 CCCCACCCCACACACTCC 61.967 72.222 0.00 0.00 0.00 3.85
193 194 3.966543 CCCCCACCCCACACACTC 61.967 72.222 0.00 0.00 0.00 3.51
231 232 2.290260 TGTGACTTATCCAGCCACTTGG 60.290 50.000 0.00 0.00 39.70 3.61
232 233 3.005554 CTGTGACTTATCCAGCCACTTG 58.994 50.000 0.00 0.00 0.00 3.16
233 234 2.639839 ACTGTGACTTATCCAGCCACTT 59.360 45.455 0.00 0.00 30.41 3.16
234 235 2.027745 CACTGTGACTTATCCAGCCACT 60.028 50.000 0.32 0.00 30.41 4.00
235 236 2.350522 CACTGTGACTTATCCAGCCAC 58.649 52.381 0.32 0.00 30.41 5.01
236 237 1.339055 GCACTGTGACTTATCCAGCCA 60.339 52.381 12.86 0.00 30.41 4.75
237 238 1.339055 TGCACTGTGACTTATCCAGCC 60.339 52.381 12.86 0.00 30.41 4.85
238 239 2.005451 CTGCACTGTGACTTATCCAGC 58.995 52.381 12.86 0.00 30.41 4.85
239 240 2.005451 GCTGCACTGTGACTTATCCAG 58.995 52.381 12.86 8.32 32.42 3.86
240 241 1.672737 CGCTGCACTGTGACTTATCCA 60.673 52.381 12.86 0.00 0.00 3.41
241 242 1.002366 CGCTGCACTGTGACTTATCC 58.998 55.000 12.86 0.00 0.00 2.59
242 243 0.371645 GCGCTGCACTGTGACTTATC 59.628 55.000 12.86 0.00 0.00 1.75
243 244 1.021390 GGCGCTGCACTGTGACTTAT 61.021 55.000 12.86 0.00 0.00 1.73
244 245 1.667830 GGCGCTGCACTGTGACTTA 60.668 57.895 12.86 0.00 0.00 2.24
245 246 2.099652 TAGGCGCTGCACTGTGACTT 62.100 55.000 12.86 0.00 37.04 3.01
246 247 2.099652 TTAGGCGCTGCACTGTGACT 62.100 55.000 12.86 0.10 39.42 3.41
247 248 1.630244 CTTAGGCGCTGCACTGTGAC 61.630 60.000 12.86 3.63 0.00 3.67
248 249 1.374631 CTTAGGCGCTGCACTGTGA 60.375 57.895 12.86 0.00 0.00 3.58
249 250 3.031964 GCTTAGGCGCTGCACTGTG 62.032 63.158 7.64 2.76 0.00 3.66
250 251 2.743928 GCTTAGGCGCTGCACTGT 60.744 61.111 7.64 0.00 0.00 3.55
269 270 4.273480 ACATATTTAAAGTGCAGCGCCTAG 59.727 41.667 2.29 0.00 0.00 3.02
270 271 4.035091 CACATATTTAAAGTGCAGCGCCTA 59.965 41.667 2.29 0.00 0.00 3.93
271 272 3.016736 ACATATTTAAAGTGCAGCGCCT 58.983 40.909 2.29 0.00 0.00 5.52
272 273 3.108144 CACATATTTAAAGTGCAGCGCC 58.892 45.455 2.29 0.00 0.00 6.53
273 274 3.108144 CCACATATTTAAAGTGCAGCGC 58.892 45.455 0.00 0.00 32.09 5.92
274 275 3.108144 GCCACATATTTAAAGTGCAGCG 58.892 45.455 0.00 0.00 32.09 5.18
275 276 3.108144 CGCCACATATTTAAAGTGCAGC 58.892 45.455 0.00 2.00 32.09 5.25
276 277 3.108144 GCGCCACATATTTAAAGTGCAG 58.892 45.455 0.00 0.00 32.09 4.41
277 278 2.752354 AGCGCCACATATTTAAAGTGCA 59.248 40.909 2.29 0.00 33.33 4.57
278 279 3.420839 AGCGCCACATATTTAAAGTGC 57.579 42.857 2.29 0.00 32.09 4.40
279 280 4.273480 AGCTAGCGCCACATATTTAAAGTG 59.727 41.667 9.55 0.00 36.60 3.16
280 281 4.451900 AGCTAGCGCCACATATTTAAAGT 58.548 39.130 9.55 0.00 36.60 2.66
281 282 5.424121 AAGCTAGCGCCACATATTTAAAG 57.576 39.130 9.55 0.00 36.60 1.85
282 283 6.285224 TCTAAGCTAGCGCCACATATTTAAA 58.715 36.000 9.55 0.00 36.60 1.52
283 284 5.849510 TCTAAGCTAGCGCCACATATTTAA 58.150 37.500 9.55 0.00 36.60 1.52
284 285 5.462530 TCTAAGCTAGCGCCACATATTTA 57.537 39.130 9.55 0.00 36.60 1.40
285 286 4.310769 CTCTAAGCTAGCGCCACATATTT 58.689 43.478 9.55 0.00 36.60 1.40
286 287 3.306364 CCTCTAAGCTAGCGCCACATATT 60.306 47.826 9.55 0.00 36.60 1.28
287 288 2.232452 CCTCTAAGCTAGCGCCACATAT 59.768 50.000 9.55 0.00 36.60 1.78
288 289 1.613925 CCTCTAAGCTAGCGCCACATA 59.386 52.381 9.55 0.00 36.60 2.29
289 290 0.390860 CCTCTAAGCTAGCGCCACAT 59.609 55.000 9.55 0.00 36.60 3.21
290 291 1.816537 CCTCTAAGCTAGCGCCACA 59.183 57.895 9.55 0.00 36.60 4.17
291 292 1.592939 GCCTCTAAGCTAGCGCCAC 60.593 63.158 9.55 0.00 36.60 5.01
292 293 2.815308 GCCTCTAAGCTAGCGCCA 59.185 61.111 9.55 0.00 36.60 5.69
293 294 2.355244 CGCCTCTAAGCTAGCGCC 60.355 66.667 9.55 0.00 42.31 6.53
296 297 0.669077 TGTAGCGCCTCTAAGCTAGC 59.331 55.000 6.62 6.62 45.32 3.42
297 298 1.950909 AGTGTAGCGCCTCTAAGCTAG 59.049 52.381 2.29 0.00 45.32 3.42
298 299 1.676529 CAGTGTAGCGCCTCTAAGCTA 59.323 52.381 2.29 0.00 44.15 3.32
299 300 0.457851 CAGTGTAGCGCCTCTAAGCT 59.542 55.000 2.29 0.00 46.53 3.74
300 301 1.148759 GCAGTGTAGCGCCTCTAAGC 61.149 60.000 2.29 0.00 0.00 3.09
301 302 0.457851 AGCAGTGTAGCGCCTCTAAG 59.542 55.000 2.29 0.00 40.15 2.18
302 303 0.173481 CAGCAGTGTAGCGCCTCTAA 59.827 55.000 2.29 0.00 40.15 2.10
303 304 1.667154 CCAGCAGTGTAGCGCCTCTA 61.667 60.000 2.29 0.00 40.15 2.43
304 305 2.575993 CAGCAGTGTAGCGCCTCT 59.424 61.111 2.29 0.00 40.15 3.69
305 306 2.510238 CCAGCAGTGTAGCGCCTC 60.510 66.667 2.29 0.00 40.15 4.70
306 307 4.087892 CCCAGCAGTGTAGCGCCT 62.088 66.667 2.29 0.00 40.15 5.52
307 308 4.394712 ACCCAGCAGTGTAGCGCC 62.395 66.667 2.29 0.00 40.15 6.53
308 309 3.121030 CACCCAGCAGTGTAGCGC 61.121 66.667 0.00 0.00 40.15 5.92
309 310 3.121030 GCACCCAGCAGTGTAGCG 61.121 66.667 3.87 0.00 44.79 4.26
310 311 3.121030 CGCACCCAGCAGTGTAGC 61.121 66.667 3.87 0.00 46.13 3.58
311 312 2.434884 CCGCACCCAGCAGTGTAG 60.435 66.667 3.87 0.00 46.13 2.74
312 313 4.015406 CCCGCACCCAGCAGTGTA 62.015 66.667 3.87 0.00 46.13 2.90
330 331 3.402681 ATCGTGGCAGTCCCTGGG 61.403 66.667 6.33 6.33 31.21 4.45
331 332 2.124983 CATCGTGGCAGTCCCTGG 60.125 66.667 0.00 0.00 31.21 4.45
332 333 2.124983 CCATCGTGGCAGTCCCTG 60.125 66.667 0.00 0.00 34.12 4.45
333 334 2.284625 TCCATCGTGGCAGTCCCT 60.285 61.111 0.00 0.00 37.47 4.20
334 335 2.125106 GTCCATCGTGGCAGTCCC 60.125 66.667 0.00 0.00 37.47 4.46
335 336 1.448540 CAGTCCATCGTGGCAGTCC 60.449 63.158 0.00 0.00 37.47 3.85
336 337 1.448540 CCAGTCCATCGTGGCAGTC 60.449 63.158 0.00 0.00 37.47 3.51
337 338 2.665000 CCAGTCCATCGTGGCAGT 59.335 61.111 0.00 0.00 37.47 4.40
341 342 2.815211 CACGCCAGTCCATCGTGG 60.815 66.667 6.15 0.00 46.68 4.94
343 344 3.529341 TTGCACGCCAGTCCATCGT 62.529 57.895 0.00 0.00 36.84 3.73
344 345 2.741985 TTGCACGCCAGTCCATCG 60.742 61.111 0.00 0.00 0.00 3.84
345 346 2.870372 GTTGCACGCCAGTCCATC 59.130 61.111 0.00 0.00 0.00 3.51
346 347 3.049674 CGTTGCACGCCAGTCCAT 61.050 61.111 0.00 0.00 33.65 3.41
356 357 2.741486 TTACCTCTGGGGCGTTGCAC 62.741 60.000 0.00 0.00 39.10 4.57
357 358 2.463589 CTTACCTCTGGGGCGTTGCA 62.464 60.000 0.00 0.00 39.10 4.08
358 359 1.745489 CTTACCTCTGGGGCGTTGC 60.745 63.158 0.00 0.00 39.10 4.17
359 360 1.745489 GCTTACCTCTGGGGCGTTG 60.745 63.158 0.00 0.00 39.10 4.10
360 361 2.669240 GCTTACCTCTGGGGCGTT 59.331 61.111 0.00 0.00 39.10 4.84
361 362 3.771160 CGCTTACCTCTGGGGCGT 61.771 66.667 0.00 0.00 40.78 5.68
363 364 4.858680 GGCGCTTACCTCTGGGGC 62.859 72.222 7.64 0.00 39.10 5.80
364 365 4.530857 CGGCGCTTACCTCTGGGG 62.531 72.222 7.64 0.00 41.89 4.96
366 367 4.451150 TGCGGCGCTTACCTCTGG 62.451 66.667 33.26 0.00 0.00 3.86
367 368 3.188786 GTGCGGCGCTTACCTCTG 61.189 66.667 33.26 0.00 0.00 3.35
368 369 4.452733 GGTGCGGCGCTTACCTCT 62.453 66.667 33.26 0.00 0.00 3.69
369 370 2.638330 TATGGTGCGGCGCTTACCTC 62.638 60.000 32.51 17.40 35.51 3.85
370 371 2.644555 CTATGGTGCGGCGCTTACCT 62.645 60.000 32.51 22.90 35.51 3.08
371 372 2.202960 TATGGTGCGGCGCTTACC 60.203 61.111 33.26 30.56 35.05 2.85
372 373 2.244651 CCTATGGTGCGGCGCTTAC 61.245 63.158 33.26 22.94 0.00 2.34
373 374 2.108157 CCTATGGTGCGGCGCTTA 59.892 61.111 33.26 18.80 0.00 3.09
374 375 4.856801 CCCTATGGTGCGGCGCTT 62.857 66.667 33.26 16.82 0.00 4.68
384 385 1.153369 CAGGCGTCACACCCTATGG 60.153 63.158 0.00 0.00 37.80 2.74
385 386 1.815421 GCAGGCGTCACACCCTATG 60.815 63.158 0.00 0.00 0.00 2.23
386 387 2.584608 GCAGGCGTCACACCCTAT 59.415 61.111 0.00 0.00 0.00 2.57
387 388 4.063967 CGCAGGCGTCACACCCTA 62.064 66.667 5.34 0.00 34.35 3.53
403 404 4.578898 TATGTAGCGCCCGCCACG 62.579 66.667 2.29 0.00 43.17 4.94
404 405 1.370587 TTTTATGTAGCGCCCGCCAC 61.371 55.000 2.29 6.67 43.17 5.01
405 406 0.677098 TTTTTATGTAGCGCCCGCCA 60.677 50.000 2.29 1.49 43.17 5.69
406 407 0.028902 CTTTTTATGTAGCGCCCGCC 59.971 55.000 2.29 0.00 43.17 6.13
407 408 0.028902 CCTTTTTATGTAGCGCCCGC 59.971 55.000 2.29 4.20 42.33 6.13
408 409 1.329599 GACCTTTTTATGTAGCGCCCG 59.670 52.381 2.29 0.00 0.00 6.13
409 410 2.361789 TGACCTTTTTATGTAGCGCCC 58.638 47.619 2.29 0.00 0.00 6.13
410 411 3.303132 CGATGACCTTTTTATGTAGCGCC 60.303 47.826 2.29 0.00 0.00 6.53
411 412 3.303132 CCGATGACCTTTTTATGTAGCGC 60.303 47.826 0.00 0.00 0.00 5.92
412 413 3.869246 ACCGATGACCTTTTTATGTAGCG 59.131 43.478 0.00 0.00 0.00 4.26
413 414 4.634443 ACACCGATGACCTTTTTATGTAGC 59.366 41.667 0.00 0.00 0.00 3.58
414 415 5.872617 TCACACCGATGACCTTTTTATGTAG 59.127 40.000 0.00 0.00 0.00 2.74
415 416 5.795972 TCACACCGATGACCTTTTTATGTA 58.204 37.500 0.00 0.00 0.00 2.29
416 417 4.647611 TCACACCGATGACCTTTTTATGT 58.352 39.130 0.00 0.00 0.00 2.29
417 418 5.621197 TTCACACCGATGACCTTTTTATG 57.379 39.130 0.00 0.00 0.00 1.90
418 419 5.768164 ACTTTCACACCGATGACCTTTTTAT 59.232 36.000 0.00 0.00 0.00 1.40
419 420 5.127491 ACTTTCACACCGATGACCTTTTTA 58.873 37.500 0.00 0.00 0.00 1.52
420 421 3.951680 ACTTTCACACCGATGACCTTTTT 59.048 39.130 0.00 0.00 0.00 1.94
421 422 3.551846 ACTTTCACACCGATGACCTTTT 58.448 40.909 0.00 0.00 0.00 2.27
422 423 3.208747 ACTTTCACACCGATGACCTTT 57.791 42.857 0.00 0.00 0.00 3.11
423 424 2.930826 ACTTTCACACCGATGACCTT 57.069 45.000 0.00 0.00 0.00 3.50
424 425 2.930826 AACTTTCACACCGATGACCT 57.069 45.000 0.00 0.00 0.00 3.85
425 426 2.875933 TGAAACTTTCACACCGATGACC 59.124 45.455 0.00 0.00 34.08 4.02
436 437 1.673920 GAACTGCCCGTGAAACTTTCA 59.326 47.619 0.00 0.00 37.33 2.69
437 438 1.673920 TGAACTGCCCGTGAAACTTTC 59.326 47.619 0.00 0.00 31.75 2.62
438 439 1.757682 TGAACTGCCCGTGAAACTTT 58.242 45.000 0.00 0.00 31.75 2.66
439 440 1.981256 ATGAACTGCCCGTGAAACTT 58.019 45.000 0.00 0.00 31.75 2.66
440 441 1.880027 GAATGAACTGCCCGTGAAACT 59.120 47.619 0.00 0.00 31.75 2.66
441 442 1.880027 AGAATGAACTGCCCGTGAAAC 59.120 47.619 0.00 0.00 0.00 2.78
442 443 1.879380 CAGAATGAACTGCCCGTGAAA 59.121 47.619 0.00 0.00 39.69 2.69
443 444 1.202758 ACAGAATGAACTGCCCGTGAA 60.203 47.619 0.00 0.00 39.69 3.18
444 445 0.396435 ACAGAATGAACTGCCCGTGA 59.604 50.000 0.00 0.00 39.69 4.35
445 446 0.518636 CACAGAATGAACTGCCCGTG 59.481 55.000 0.00 0.00 39.69 4.94
446 447 0.396435 TCACAGAATGAACTGCCCGT 59.604 50.000 0.00 0.00 39.69 5.28
447 448 1.522668 TTCACAGAATGAACTGCCCG 58.477 50.000 0.00 0.00 42.62 6.13
455 456 5.163864 CGGACGAAATCAATTCACAGAATGA 60.164 40.000 0.00 0.00 36.47 2.57
456 457 5.023920 CGGACGAAATCAATTCACAGAATG 58.976 41.667 0.00 0.00 37.96 2.67
457 458 4.935205 TCGGACGAAATCAATTCACAGAAT 59.065 37.500 0.00 0.00 37.96 2.40
458 459 4.311606 TCGGACGAAATCAATTCACAGAA 58.688 39.130 0.00 0.00 37.96 3.02
459 460 3.920446 TCGGACGAAATCAATTCACAGA 58.080 40.909 0.00 0.00 37.96 3.41
460 461 4.436050 CCTTCGGACGAAATCAATTCACAG 60.436 45.833 8.59 0.00 37.96 3.66
461 462 3.435327 CCTTCGGACGAAATCAATTCACA 59.565 43.478 8.59 0.00 37.96 3.58
462 463 3.435671 ACCTTCGGACGAAATCAATTCAC 59.564 43.478 8.59 0.00 37.96 3.18
463 464 3.670625 ACCTTCGGACGAAATCAATTCA 58.329 40.909 8.59 0.00 37.96 2.57
464 465 4.680171 AACCTTCGGACGAAATCAATTC 57.320 40.909 8.59 0.00 33.34 2.17
465 466 6.563222 TTTAACCTTCGGACGAAATCAATT 57.437 33.333 8.59 2.16 33.34 2.32
466 467 6.563222 TTTTAACCTTCGGACGAAATCAAT 57.437 33.333 8.59 0.00 33.34 2.57
467 468 6.563222 ATTTTAACCTTCGGACGAAATCAA 57.437 33.333 8.59 0.00 33.34 2.57
468 469 6.016943 ACAATTTTAACCTTCGGACGAAATCA 60.017 34.615 8.59 0.00 33.34 2.57
469 470 6.376177 ACAATTTTAACCTTCGGACGAAATC 58.624 36.000 8.59 0.00 33.34 2.17
470 471 6.016943 TGACAATTTTAACCTTCGGACGAAAT 60.017 34.615 8.59 1.24 33.34 2.17
471 472 5.296283 TGACAATTTTAACCTTCGGACGAAA 59.704 36.000 8.59 0.00 33.34 3.46
472 473 4.815308 TGACAATTTTAACCTTCGGACGAA 59.185 37.500 6.98 6.98 0.00 3.85
473 474 4.378774 TGACAATTTTAACCTTCGGACGA 58.621 39.130 0.00 0.00 0.00 4.20
474 475 4.735662 TGACAATTTTAACCTTCGGACG 57.264 40.909 0.00 0.00 0.00 4.79
475 476 7.940178 AATTTGACAATTTTAACCTTCGGAC 57.060 32.000 0.00 0.00 0.00 4.79
476 477 7.042389 GCAAATTTGACAATTTTAACCTTCGGA 60.042 33.333 22.31 0.00 40.09 4.55
477 478 7.068955 GCAAATTTGACAATTTTAACCTTCGG 58.931 34.615 22.31 0.00 40.09 4.30
478 479 7.068955 GGCAAATTTGACAATTTTAACCTTCG 58.931 34.615 22.31 0.00 40.09 3.79
479 480 7.359595 GGGCAAATTTGACAATTTTAACCTTC 58.640 34.615 25.05 0.00 40.09 3.46
480 481 6.264292 GGGGCAAATTTGACAATTTTAACCTT 59.736 34.615 25.05 0.00 40.09 3.50
481 482 5.767665 GGGGCAAATTTGACAATTTTAACCT 59.232 36.000 25.05 0.00 40.09 3.50
482 483 5.767665 AGGGGCAAATTTGACAATTTTAACC 59.232 36.000 25.05 13.94 40.09 2.85
483 484 6.875948 AGGGGCAAATTTGACAATTTTAAC 57.124 33.333 25.05 5.31 40.09 2.01
484 485 6.647067 CGTAGGGGCAAATTTGACAATTTTAA 59.353 34.615 25.05 0.81 40.09 1.52
485 486 6.159988 CGTAGGGGCAAATTTGACAATTTTA 58.840 36.000 25.05 7.14 40.09 1.52
486 487 4.994217 CGTAGGGGCAAATTTGACAATTTT 59.006 37.500 25.05 8.05 40.09 1.82
487 488 4.039852 ACGTAGGGGCAAATTTGACAATTT 59.960 37.500 25.05 9.71 42.37 1.82
488 489 3.576550 ACGTAGGGGCAAATTTGACAATT 59.423 39.130 25.05 12.06 38.18 2.32
489 490 3.161866 ACGTAGGGGCAAATTTGACAAT 58.838 40.909 25.05 14.85 38.18 2.71
490 491 2.554893 GACGTAGGGGCAAATTTGACAA 59.445 45.455 25.05 7.56 38.18 3.18
491 492 2.156098 GACGTAGGGGCAAATTTGACA 58.844 47.619 25.05 2.14 38.18 3.58
492 493 1.471287 GGACGTAGGGGCAAATTTGAC 59.529 52.381 22.31 19.34 34.70 3.18
493 494 1.074084 TGGACGTAGGGGCAAATTTGA 59.926 47.619 22.31 0.00 0.00 2.69
494 495 1.472480 CTGGACGTAGGGGCAAATTTG 59.528 52.381 14.03 14.03 0.00 2.32
495 496 1.834188 CTGGACGTAGGGGCAAATTT 58.166 50.000 0.00 0.00 0.00 1.82
496 497 0.679960 GCTGGACGTAGGGGCAAATT 60.680 55.000 0.00 0.00 0.00 1.82
497 498 1.077716 GCTGGACGTAGGGGCAAAT 60.078 57.895 0.00 0.00 0.00 2.32
498 499 2.180159 GAGCTGGACGTAGGGGCAAA 62.180 60.000 0.00 0.00 0.00 3.68
499 500 2.606519 AGCTGGACGTAGGGGCAA 60.607 61.111 0.00 0.00 0.00 4.52
500 501 3.075005 GAGCTGGACGTAGGGGCA 61.075 66.667 0.00 0.00 0.00 5.36
501 502 3.851128 GGAGCTGGACGTAGGGGC 61.851 72.222 0.00 0.00 0.00 5.80
502 503 3.528370 CGGAGCTGGACGTAGGGG 61.528 72.222 0.00 0.00 0.00 4.79
514 515 1.746991 CCTGAAGCCTTTCCGGAGC 60.747 63.158 3.34 4.91 39.34 4.70
528 529 0.030501 ATGGACCGGATTACCCCTGA 60.031 55.000 9.46 0.00 0.00 3.86
563 564 2.236395 CTCTCGTTTGGTGGGTAAGGAT 59.764 50.000 0.00 0.00 0.00 3.24
818 824 3.277142 AATTCCCCGCTACTTTTCGAT 57.723 42.857 0.00 0.00 0.00 3.59
854 860 0.250684 TGGCTGGATTCTTTGCGTGA 60.251 50.000 0.00 0.00 0.00 4.35
1072 1078 1.750780 GGCAGGGGAGCTAGCAAAC 60.751 63.158 18.83 7.74 34.17 2.93
1218 1224 2.427453 TCCTCGGACAAAGCAGATCTAC 59.573 50.000 0.00 0.00 0.00 2.59
1376 1382 2.136196 CTCCTCCGCCGCATAGAGAC 62.136 65.000 4.11 0.00 0.00 3.36
1464 1470 0.402121 GGTTTCTCCTGCCAGGACTT 59.598 55.000 10.05 0.00 40.06 3.01
1761 1770 1.354031 TGAGCACCATACCACCAATGT 59.646 47.619 0.00 0.00 0.00 2.71
2331 5882 3.118811 CCTCTTCTTGAGCCACTTCTAGG 60.119 52.174 0.00 0.00 41.35 3.02
2721 6277 3.928992 CAGCAGCCAGTATTGATATACCG 59.071 47.826 0.00 0.00 37.87 4.02
2902 6458 5.574188 AGCAGTTTCAGATAATTTCAGGGT 58.426 37.500 0.00 0.00 0.00 4.34
3462 7018 4.825085 TCACCCTTTGTGTTACCATCTTTC 59.175 41.667 0.00 0.00 45.61 2.62
3539 7095 4.635765 CGGATTCCAATAGCTGAACTTTCA 59.364 41.667 3.09 0.00 35.57 2.69
4136 7692 2.738846 GACATGACGCAATCAGAAGTGT 59.261 45.455 0.00 0.00 41.91 3.55
5105 8664 4.080919 TGTGGGGTCTGTCAAATGATCTAG 60.081 45.833 0.00 0.00 0.00 2.43
5106 8665 3.843619 TGTGGGGTCTGTCAAATGATCTA 59.156 43.478 0.00 0.00 0.00 1.98
5162 8721 6.096673 TGTCTAAGATGACAGCTAAACACA 57.903 37.500 0.00 0.00 41.43 3.72
5182 8741 8.755696 TGCACAAACAAGGATTTAATTATGTC 57.244 30.769 0.00 0.00 0.00 3.06
5396 8955 0.614697 TCAGGTGATCTTCGCTGGGA 60.615 55.000 0.00 0.00 0.00 4.37
5584 9143 0.974383 ACCGTCTAGACAAAGGGTGG 59.026 55.000 22.37 14.96 0.00 4.61
6135 9694 4.378770 CGAACATGTCATTTCTTGAGGTGG 60.379 45.833 0.00 0.00 34.17 4.61
6185 9744 1.870167 GCGGTGGAATTCTCGAGATCC 60.870 57.143 22.92 22.92 0.00 3.36
6207 9766 2.223479 CCCCTTTTGAAGTCACGTGTTG 60.223 50.000 16.51 0.00 0.00 3.33
6208 9767 2.021457 CCCCTTTTGAAGTCACGTGTT 58.979 47.619 16.51 2.82 0.00 3.32
6209 9768 1.210967 TCCCCTTTTGAAGTCACGTGT 59.789 47.619 16.51 0.00 0.00 4.49
6447 10009 8.458573 TTCTTATCTGCTTTAGTTCCAAAACA 57.541 30.769 0.00 0.00 37.88 2.83
6498 10060 0.035820 TGGATTTGCAGTACGGTCCC 60.036 55.000 0.00 0.00 0.00 4.46
6503 10065 5.698089 ACTCATATCATGGATTTGCAGTACG 59.302 40.000 0.00 0.00 0.00 3.67
6524 10086 5.885912 TCCCTTTGGCAAATAGTAATGACTC 59.114 40.000 13.89 0.00 37.10 3.36
6569 10131 3.486375 CGTGAGGTGCATAATTTCAGCTG 60.486 47.826 7.63 7.63 40.64 4.24
6787 10360 1.022735 GAAGTGATGCCAGGATGCAG 58.977 55.000 0.00 0.00 45.93 4.41
6788 10361 0.622136 AGAAGTGATGCCAGGATGCA 59.378 50.000 0.00 0.00 46.94 3.96
6789 10362 1.022735 CAGAAGTGATGCCAGGATGC 58.977 55.000 0.00 0.00 31.97 3.91
6790 10363 2.286872 GACAGAAGTGATGCCAGGATG 58.713 52.381 0.00 0.00 0.00 3.51
6791 10364 1.911357 TGACAGAAGTGATGCCAGGAT 59.089 47.619 0.00 0.00 0.00 3.24
6792 10365 1.351076 TGACAGAAGTGATGCCAGGA 58.649 50.000 0.00 0.00 0.00 3.86
6793 10366 2.414994 ATGACAGAAGTGATGCCAGG 57.585 50.000 0.00 0.00 0.00 4.45
6794 10367 4.482386 CAAAATGACAGAAGTGATGCCAG 58.518 43.478 0.00 0.00 0.00 4.85
6897 10597 7.922382 TCCTGAAGAAGAAATATCCAGAACTT 58.078 34.615 0.00 0.00 0.00 2.66
6920 10621 3.119495 GGCCAAATATGTGTCAGTGTTCC 60.119 47.826 0.00 0.00 0.00 3.62
6926 10627 2.424601 CTGGTGGCCAAATATGTGTCAG 59.575 50.000 7.24 0.61 30.80 3.51
6935 10636 2.086610 ACTTGTTCTGGTGGCCAAAT 57.913 45.000 7.24 0.00 30.80 2.32
6938 10639 0.550914 AGAACTTGTTCTGGTGGCCA 59.449 50.000 14.36 0.00 0.00 5.36
6939 10640 0.954452 CAGAACTTGTTCTGGTGGCC 59.046 55.000 26.86 0.00 43.48 5.36
6945 10646 8.558973 AGAAGAAATATCCAGAACTTGTTCTG 57.441 34.615 27.33 27.33 45.99 3.02
6946 10647 9.225436 GAAGAAGAAATATCCAGAACTTGTTCT 57.775 33.333 9.93 9.93 35.93 3.01
6947 10648 9.003658 TGAAGAAGAAATATCCAGAACTTGTTC 57.996 33.333 5.44 5.44 37.79 3.18
6948 10649 8.924511 TGAAGAAGAAATATCCAGAACTTGTT 57.075 30.769 0.00 0.00 0.00 2.83
6949 10650 7.609532 CCTGAAGAAGAAATATCCAGAACTTGT 59.390 37.037 0.00 0.00 0.00 3.16
6950 10651 7.826252 TCCTGAAGAAGAAATATCCAGAACTTG 59.174 37.037 0.00 0.00 0.00 3.16
6951 10652 7.922382 TCCTGAAGAAGAAATATCCAGAACTT 58.078 34.615 0.00 0.00 0.00 2.66
6953 10654 7.607991 TGTTCCTGAAGAAGAAATATCCAGAAC 59.392 37.037 0.00 0.00 34.29 3.01
6954 10655 7.607991 GTGTTCCTGAAGAAGAAATATCCAGAA 59.392 37.037 0.00 0.00 34.29 3.02
6955 10656 7.106239 GTGTTCCTGAAGAAGAAATATCCAGA 58.894 38.462 0.00 0.00 34.29 3.86
6956 10657 6.317391 GGTGTTCCTGAAGAAGAAATATCCAG 59.683 42.308 0.00 0.00 34.29 3.86
6958 10659 6.094186 GTGGTGTTCCTGAAGAAGAAATATCC 59.906 42.308 0.00 0.00 34.29 2.59
6959 10660 6.655003 TGTGGTGTTCCTGAAGAAGAAATATC 59.345 38.462 0.00 0.00 34.29 1.63
6961 10662 5.935945 TGTGGTGTTCCTGAAGAAGAAATA 58.064 37.500 0.00 0.00 34.29 1.40
6963 10664 4.229304 TGTGGTGTTCCTGAAGAAGAAA 57.771 40.909 0.00 0.00 34.29 2.52
6964 10665 3.924114 TGTGGTGTTCCTGAAGAAGAA 57.076 42.857 0.00 0.00 34.29 2.52
6965 10666 3.136443 ACATGTGGTGTTCCTGAAGAAGA 59.864 43.478 0.00 0.00 38.01 2.87
6967 10668 3.576078 ACATGTGGTGTTCCTGAAGAA 57.424 42.857 0.00 0.00 38.01 2.52
7046 10910 1.879380 GTGAACTAACTGTGCATGGCA 59.121 47.619 0.00 0.00 36.45 4.92
7097 11322 4.159506 TGGGGTTTGAATTAATAGTGCAGC 59.840 41.667 0.00 0.00 0.00 5.25
7098 11323 5.913137 TGGGGTTTGAATTAATAGTGCAG 57.087 39.130 0.00 0.00 0.00 4.41
7103 11328 9.883142 TTAAGCATTTGGGGTTTGAATTAATAG 57.117 29.630 0.00 0.00 0.00 1.73
7108 11333 8.382405 AGTTATTAAGCATTTGGGGTTTGAATT 58.618 29.630 0.00 0.00 0.00 2.17
7109 11334 7.823799 CAGTTATTAAGCATTTGGGGTTTGAAT 59.176 33.333 0.00 0.00 0.00 2.57
7110 11335 7.158021 CAGTTATTAAGCATTTGGGGTTTGAA 58.842 34.615 0.00 0.00 0.00 2.69
7111 11336 6.696411 CAGTTATTAAGCATTTGGGGTTTGA 58.304 36.000 0.00 0.00 0.00 2.69
7112 11337 5.351189 GCAGTTATTAAGCATTTGGGGTTTG 59.649 40.000 0.00 0.00 0.00 2.93
7113 11338 5.012561 TGCAGTTATTAAGCATTTGGGGTTT 59.987 36.000 0.00 0.00 32.55 3.27
7118 11474 8.931385 AAATAGTGCAGTTATTAAGCATTTGG 57.069 30.769 0.00 0.00 40.78 3.28
7144 11505 2.539338 GGGTGCGCTCGTTTCAACA 61.539 57.895 9.73 0.00 0.00 3.33
7169 11551 0.531974 ACGACATTGGACAGCAACGT 60.532 50.000 0.00 0.00 0.00 3.99
7170 11552 1.126113 GTACGACATTGGACAGCAACG 59.874 52.381 0.00 0.00 0.00 4.10
7171 11553 2.139917 TGTACGACATTGGACAGCAAC 58.860 47.619 0.00 0.00 0.00 4.17
7172 11554 2.535012 TGTACGACATTGGACAGCAA 57.465 45.000 0.00 0.00 0.00 3.91
7225 11608 1.674817 CCCCTAACCTTGTGCACTACG 60.675 57.143 19.41 7.07 0.00 3.51
7300 11713 6.885952 TGAAAACGGATCTTTGTTCCATAA 57.114 33.333 0.00 0.00 32.45 1.90
7301 11714 7.040062 ACAATGAAAACGGATCTTTGTTCCATA 60.040 33.333 10.65 0.00 40.29 2.74
7302 11715 5.982890 ATGAAAACGGATCTTTGTTCCAT 57.017 34.783 0.00 1.57 32.45 3.41
7304 11717 5.528870 ACAATGAAAACGGATCTTTGTTCC 58.471 37.500 10.65 0.00 40.29 3.62
7315 11729 5.144359 CGAGAAACCTAACAATGAAAACGG 58.856 41.667 0.00 0.00 0.00 4.44
7321 11735 2.991190 GTCGCGAGAAACCTAACAATGA 59.009 45.455 10.24 0.00 45.01 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.