Multiple sequence alignment - TraesCS7D01G283900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G283900 chr7D 100.000 5565 0 0 1 5565 296512611 296507047 0.000000e+00 10277.0
1 TraesCS7D01G283900 chr7D 91.045 402 25 8 3428 3829 535320100 535319710 2.950000e-147 532.0
2 TraesCS7D01G283900 chr7D 96.914 162 5 0 4768 4929 376062677 376062838 7.100000e-69 272.0
3 TraesCS7D01G283900 chr7D 89.091 165 18 0 2793 2957 199349006 199348842 7.310000e-49 206.0
4 TraesCS7D01G283900 chr7D 89.634 164 14 3 2793 2954 619121490 619121652 7.310000e-49 206.0
5 TraesCS7D01G283900 chr7D 98.182 55 1 0 1 55 8593388 8593442 4.590000e-16 97.1
6 TraesCS7D01G283900 chr7D 92.683 41 3 0 457 497 584773684 584773724 6.020000e-05 60.2
7 TraesCS7D01G283900 chr7B 96.544 4051 82 15 743 4770 339617968 339613953 0.000000e+00 6652.0
8 TraesCS7D01G283900 chr7B 85.505 683 63 14 72 749 339618900 339618249 0.000000e+00 680.0
9 TraesCS7D01G283900 chr7B 92.481 133 5 5 4926 5056 339613962 339613833 9.520000e-43 185.0
10 TraesCS7D01G283900 chrUn 96.442 3963 68 19 829 4770 116434696 116430786 0.000000e+00 6469.0
11 TraesCS7D01G283900 chrUn 83.648 1376 138 44 3435 4764 109117458 109118792 0.000000e+00 1214.0
12 TraesCS7D01G283900 chrUn 83.277 1184 97 39 1657 2794 109115448 109116576 0.000000e+00 996.0
13 TraesCS7D01G283900 chrUn 89.102 679 56 10 54 728 116437478 116436814 0.000000e+00 828.0
14 TraesCS7D01G283900 chrUn 89.293 495 40 8 2944 3435 109116567 109117051 4.770000e-170 608.0
15 TraesCS7D01G283900 chrUn 86.521 549 49 16 3536 4071 109122638 109123174 1.040000e-161 580.0
16 TraesCS7D01G283900 chrUn 81.123 837 59 39 1657 2447 342729260 342728477 3.740000e-161 579.0
17 TraesCS7D01G283900 chrUn 81.123 837 59 39 1657 2447 349354711 349355494 3.740000e-161 579.0
18 TraesCS7D01G283900 chrUn 94.886 176 8 1 4758 4932 141680736 141680911 1.980000e-69 274.0
19 TraesCS7D01G283900 chrUn 94.958 119 4 2 717 833 116436567 116436449 9.520000e-43 185.0
20 TraesCS7D01G283900 chrUn 90.226 133 4 4 4926 5056 116430795 116430670 1.240000e-36 165.0
21 TraesCS7D01G283900 chrUn 95.455 44 0 2 5058 5099 116430613 116430570 1.000000e-07 69.4
22 TraesCS7D01G283900 chr5A 86.079 1882 147 49 2947 4763 703667817 703665986 0.000000e+00 1917.0
23 TraesCS7D01G283900 chr5A 91.162 396 25 7 3428 3823 629266265 629266650 3.820000e-146 529.0
24 TraesCS7D01G283900 chr5A 94.172 326 17 1 2390 2713 703668186 703667861 3.870000e-136 496.0
25 TraesCS7D01G283900 chr5A 81.413 538 52 23 1894 2385 703668894 703668359 4.040000e-106 396.0
26 TraesCS7D01G283900 chr5A 88.757 169 19 0 2790 2958 653299604 653299436 2.030000e-49 207.0
27 TraesCS7D01G283900 chr3D 95.175 456 20 2 5112 5565 132164910 132165365 0.000000e+00 719.0
28 TraesCS7D01G283900 chr3D 94.934 454 23 0 5112 5565 415664962 415664509 0.000000e+00 712.0
29 TraesCS7D01G283900 chr3D 93.966 464 25 3 5104 5564 337660605 337660142 0.000000e+00 699.0
30 TraesCS7D01G283900 chr3D 92.391 184 12 2 4768 4949 595025137 595024954 1.540000e-65 261.0
31 TraesCS7D01G283900 chr3D 90.741 162 15 0 2793 2954 149764623 149764784 3.380000e-52 217.0
32 TraesCS7D01G283900 chr3D 90.741 162 15 0 2793 2954 598889732 598889893 3.380000e-52 217.0
33 TraesCS7D01G283900 chr3D 88.415 164 17 1 2793 2954 134598241 134598404 4.400000e-46 196.0
34 TraesCS7D01G283900 chr3D 87.097 93 12 0 559 651 73894330 73894422 7.620000e-19 106.0
35 TraesCS7D01G283900 chr3D 98.182 55 1 0 1 55 520157863 520157809 4.590000e-16 97.1
36 TraesCS7D01G283900 chr3D 93.548 62 3 1 2 63 347611822 347611882 2.130000e-14 91.6
37 TraesCS7D01G283900 chr2D 95.154 454 22 0 5112 5565 88291341 88291794 0.000000e+00 717.0
38 TraesCS7D01G283900 chr2D 95.165 455 20 2 5112 5565 559301563 559301110 0.000000e+00 717.0
39 TraesCS7D01G283900 chr2D 91.033 368 21 9 3458 3823 540171446 540171803 2.330000e-133 486.0
40 TraesCS7D01G283900 chr2D 94.595 185 6 4 4746 4929 539169966 539170147 3.280000e-72 283.0
41 TraesCS7D01G283900 chr2D 93.548 62 3 1 1 62 37051393 37051333 2.130000e-14 91.6
42 TraesCS7D01G283900 chr2D 93.548 62 3 1 1 62 81244853 81244793 2.130000e-14 91.6
43 TraesCS7D01G283900 chr5D 94.945 455 23 0 5111 5565 230977334 230976880 0.000000e+00 713.0
44 TraesCS7D01G283900 chr5D 87.952 166 19 1 2793 2957 100989750 100989585 1.580000e-45 195.0
45 TraesCS7D01G283900 chr5D 87.425 167 19 2 2790 2955 198954904 198955069 2.050000e-44 191.0
46 TraesCS7D01G283900 chr5D 87.425 167 19 1 2793 2957 498268874 498268708 2.050000e-44 191.0
47 TraesCS7D01G283900 chr5D 98.182 55 1 0 1 55 276306890 276306836 4.590000e-16 97.1
48 TraesCS7D01G283900 chr5D 98.182 55 1 0 1 55 521864230 521864284 4.590000e-16 97.1
49 TraesCS7D01G283900 chr5D 98.148 54 1 0 2 55 531294288 531294341 1.650000e-15 95.3
50 TraesCS7D01G283900 chr5D 93.548 62 3 1 1 62 6082095 6082035 2.130000e-14 91.6
51 TraesCS7D01G283900 chr5D 90.769 65 5 1 1 65 545209547 545209484 9.930000e-13 86.1
52 TraesCS7D01G283900 chr5D 84.146 82 9 4 2770 2849 542693272 542693351 5.980000e-10 76.8
53 TraesCS7D01G283900 chr4D 94.505 455 24 1 5112 5565 349005055 349005509 0.000000e+00 701.0
54 TraesCS7D01G283900 chr4D 89.571 163 17 0 2792 2954 21147894 21147732 2.030000e-49 207.0
55 TraesCS7D01G283900 chr4D 96.364 55 2 0 1 55 8977873 8977819 2.130000e-14 91.6
56 TraesCS7D01G283900 chr4D 96.364 55 2 0 1 55 421970129 421970183 2.130000e-14 91.6
57 TraesCS7D01G283900 chr4D 96.296 54 2 0 5057 5110 54812775 54812722 7.680000e-14 89.8
58 TraesCS7D01G283900 chr4D 93.443 61 3 1 3 63 323112945 323112886 7.680000e-14 89.8
59 TraesCS7D01G283900 chr4A 94.323 458 22 3 5111 5564 381226108 381225651 0.000000e+00 699.0
60 TraesCS7D01G283900 chr4A 96.386 166 6 0 4768 4933 517406632 517406467 1.980000e-69 274.0
61 TraesCS7D01G283900 chr2A 94.273 454 26 0 5112 5565 391865361 391865814 0.000000e+00 695.0
62 TraesCS7D01G283900 chr2A 91.791 402 23 7 3428 3829 655316663 655316272 8.150000e-153 551.0
63 TraesCS7D01G283900 chr2A 96.364 55 2 0 1 55 434580204 434580258 2.130000e-14 91.6
64 TraesCS7D01G283900 chr2A 83.871 93 15 0 559 651 472249184 472249276 7.680000e-14 89.8
65 TraesCS7D01G283900 chr2A 90.625 64 5 1 1 64 159188535 159188597 3.570000e-12 84.2
66 TraesCS7D01G283900 chr2A 84.286 70 11 0 581 650 372360521 372360452 1.000000e-07 69.4
67 TraesCS7D01G283900 chr4B 81.123 837 59 39 1657 2447 664107516 664108299 3.740000e-161 579.0
68 TraesCS7D01G283900 chr4B 81.123 837 59 39 1657 2447 664131866 664132649 3.740000e-161 579.0
69 TraesCS7D01G283900 chr4B 88.636 396 35 7 3428 3823 181044592 181044977 1.810000e-129 473.0
70 TraesCS7D01G283900 chr4B 90.909 165 15 0 2793 2957 28724143 28724307 7.260000e-54 222.0
71 TraesCS7D01G283900 chr4B 93.750 64 4 0 3428 3491 181044516 181044579 4.590000e-16 97.1
72 TraesCS7D01G283900 chr6D 91.542 402 24 7 3428 3829 264000418 264000027 3.790000e-151 545.0
73 TraesCS7D01G283900 chr6D 96.914 162 5 0 4768 4929 423084322 423084161 7.100000e-69 272.0
74 TraesCS7D01G283900 chr6D 90.798 163 13 2 2793 2954 351233596 351233435 3.380000e-52 217.0
75 TraesCS7D01G283900 chr6D 88.024 167 18 1 2793 2957 47794090 47793924 4.400000e-46 196.0
76 TraesCS7D01G283900 chr6D 88.024 167 18 1 2793 2957 466183456 466183290 4.400000e-46 196.0
77 TraesCS7D01G283900 chr6D 87.730 163 20 0 2792 2954 460744925 460745087 2.050000e-44 191.0
78 TraesCS7D01G283900 chr6D 98.182 55 1 0 1 55 139562421 139562475 4.590000e-16 97.1
79 TraesCS7D01G283900 chr6D 96.364 55 2 0 1 55 373052022 373051968 2.130000e-14 91.6
80 TraesCS7D01G283900 chr6D 96.364 55 2 0 1 55 392032020 392031966 2.130000e-14 91.6
81 TraesCS7D01G283900 chr6D 81.633 98 12 5 592 689 49269587 49269496 5.980000e-10 76.8
82 TraesCS7D01G283900 chr6A 91.162 396 24 8 3428 3823 59350723 59351107 1.370000e-145 527.0
83 TraesCS7D01G283900 chr6A 83.908 87 14 0 559 645 18356769 18356855 3.570000e-12 84.2
84 TraesCS7D01G283900 chr2B 90.657 396 27 7 3428 3823 330973742 330974127 8.260000e-143 518.0
85 TraesCS7D01G283900 chr2B 89.646 396 31 7 3428 3823 496466706 496467091 3.870000e-136 496.0
86 TraesCS7D01G283900 chr2B 92.308 65 4 1 1 65 51501103 51501040 2.130000e-14 91.6
87 TraesCS7D01G283900 chr1D 97.531 162 4 0 4768 4929 338937212 338937373 1.530000e-70 278.0
88 TraesCS7D01G283900 chr1D 95.833 168 7 0 4765 4932 463382069 463381902 7.100000e-69 272.0
89 TraesCS7D01G283900 chr1D 88.889 162 18 0 2793 2954 475824120 475824281 3.400000e-47 200.0
90 TraesCS7D01G283900 chr1D 88.344 163 19 0 2793 2955 481386457 481386619 4.400000e-46 196.0
91 TraesCS7D01G283900 chr1D 87.654 162 20 0 2793 2954 30365723 30365562 7.360000e-44 189.0
92 TraesCS7D01G283900 chr1D 85.799 169 19 4 2790 2954 286391234 286391067 2.060000e-39 174.0
93 TraesCS7D01G283900 chr1D 84.940 166 24 1 2790 2954 331539890 331539725 3.450000e-37 167.0
94 TraesCS7D01G283900 chr1D 84.706 170 21 4 2792 2957 253222045 253222213 1.240000e-36 165.0
95 TraesCS7D01G283900 chr1D 81.437 167 25 3 2790 2954 320172789 320172951 1.260000e-26 132.0
96 TraesCS7D01G283900 chr1D 80.000 165 33 0 2790 2954 332216312 332216476 7.570000e-24 122.0
97 TraesCS7D01G283900 chr1D 84.685 111 16 1 2845 2955 475213843 475213734 5.890000e-20 110.0
98 TraesCS7D01G283900 chr1D 96.364 55 2 0 1 55 1250062 1250116 2.130000e-14 91.6
99 TraesCS7D01G283900 chr1D 96.364 55 2 0 1 55 287170611 287170557 2.130000e-14 91.6
100 TraesCS7D01G283900 chr1D 96.364 55 2 0 1 55 364729581 364729635 2.130000e-14 91.6
101 TraesCS7D01G283900 chr1D 96.364 55 2 0 1 55 481813821 481813875 2.130000e-14 91.6
102 TraesCS7D01G283900 chr1D 96.296 54 2 0 2 55 47945240 47945293 7.680000e-14 89.8
103 TraesCS7D01G283900 chr1D 96.296 54 2 0 1 54 198165306 198165253 7.680000e-14 89.8
104 TraesCS7D01G283900 chr1D 94.545 55 3 0 1 55 15052260 15052314 9.930000e-13 86.1
105 TraesCS7D01G283900 chr1D 91.935 62 4 1 1 62 213705357 213705417 9.930000e-13 86.1
106 TraesCS7D01G283900 chr1D 94.545 55 3 0 1 55 271840437 271840383 9.930000e-13 86.1
107 TraesCS7D01G283900 chr1D 87.692 65 8 0 2788 2852 234907473 234907409 5.980000e-10 76.8
108 TraesCS7D01G283900 chr6B 96.341 164 6 0 4766 4929 132353414 132353577 2.550000e-68 270.0
109 TraesCS7D01G283900 chr6B 90.123 162 16 0 2793 2954 528091324 528091485 1.570000e-50 211.0
110 TraesCS7D01G283900 chr6B 83.889 180 27 2 2782 2961 450150573 450150750 2.670000e-38 171.0
111 TraesCS7D01G283900 chr6B 84.259 108 14 3 379 485 54696318 54696213 9.860000e-18 102.0
112 TraesCS7D01G283900 chr5B 88.957 163 18 0 2793 2955 539314443 539314281 9.450000e-48 202.0
113 TraesCS7D01G283900 chr5B 98.182 55 1 0 1 55 677656986 677656932 4.590000e-16 97.1
114 TraesCS7D01G283900 chr1B 98.182 55 1 0 1 55 456275559 456275505 4.590000e-16 97.1
115 TraesCS7D01G283900 chr1B 82.105 95 15 2 391 484 552306762 552306669 4.620000e-11 80.5
116 TraesCS7D01G283900 chr1B 100.000 29 0 0 456 484 517917770 517917798 3.000000e-03 54.7
117 TraesCS7D01G283900 chr7A 93.548 62 3 1 1 62 16307080 16307020 2.130000e-14 91.6
118 TraesCS7D01G283900 chr7A 93.548 62 3 1 1 62 269137779 269137719 2.130000e-14 91.6
119 TraesCS7D01G283900 chr7A 92.188 64 4 1 1 64 52680438 52680500 7.680000e-14 89.8
120 TraesCS7D01G283900 chr3A 93.548 62 3 1 1 62 697499288 697499348 2.130000e-14 91.6
121 TraesCS7D01G283900 chr3B 81.818 77 12 2 2778 2852 465344793 465344717 4.650000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G283900 chr7D 296507047 296512611 5564 True 10277.000000 10277 100.000000 1 5565 1 chr7D.!!$R2 5564
1 TraesCS7D01G283900 chr7B 339613833 339618900 5067 True 2505.666667 6652 91.510000 72 5056 3 chr7B.!!$R1 4984
2 TraesCS7D01G283900 chrUn 116430570 116437478 6908 True 1543.280000 6469 93.236600 54 5099 5 chrUn.!!$R2 5045
3 TraesCS7D01G283900 chrUn 109115448 109123174 7726 False 849.500000 1214 85.684750 1657 4764 4 chrUn.!!$F3 3107
4 TraesCS7D01G283900 chrUn 342728477 342729260 783 True 579.000000 579 81.123000 1657 2447 1 chrUn.!!$R1 790
5 TraesCS7D01G283900 chrUn 349354711 349355494 783 False 579.000000 579 81.123000 1657 2447 1 chrUn.!!$F2 790
6 TraesCS7D01G283900 chr5A 703665986 703668894 2908 True 936.333333 1917 87.221333 1894 4763 3 chr5A.!!$R2 2869
7 TraesCS7D01G283900 chr4B 664107516 664108299 783 False 579.000000 579 81.123000 1657 2447 1 chr4B.!!$F2 790
8 TraesCS7D01G283900 chr4B 664131866 664132649 783 False 579.000000 579 81.123000 1657 2447 1 chr4B.!!$F3 790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
588 593 0.110486 ATGTGACGGGCCAGTCTTTT 59.890 50.000 31.83 16.18 41.47 2.27 F
657 665 0.247814 GTGTATGTGCGTGCATCTGC 60.248 55.000 0.00 0.00 42.50 4.26 F
1168 3492 1.301087 CACGCCAAACCTCGTACCA 60.301 57.895 0.00 0.00 37.14 3.25 F
1930 4264 1.691976 TGTAGAGGTGTTGACCCTGTG 59.308 52.381 0.00 0.00 44.40 3.66 F
2920 5475 6.020121 CCGTGTGTAGTCCGTATTAAAATCTG 60.020 42.308 0.00 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2218 4601 2.658325 GCAAGCTACAAAAATGCAGTCG 59.342 45.455 0.00 0.0 37.00 4.18 R
2333 4716 8.420222 TGCTTCTCAAATGTGAAGGAAAATAAA 58.580 29.630 20.55 0.0 40.96 1.40 R
2938 5493 4.800023 TGAGATATACTCCCTCCGTTTCA 58.200 43.478 0.00 0.0 44.34 2.69 R
3660 6641 5.415701 GCATTCAAGAAATCAGGAACCTACA 59.584 40.000 0.00 0.0 0.00 2.74 R
4587 7609 3.135348 TGGCAGATTGCTAGTAGATTGCT 59.865 43.478 0.00 0.0 44.28 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.829388 CCTGGTGGACTGGGGATA 57.171 61.111 0.00 0.00 34.73 2.59
22 23 2.221918 CCTGGTGGACTGGGGATAC 58.778 63.158 0.00 0.00 34.73 2.24
39 40 4.748701 GGATACCATAGTCCCTCTAACCA 58.251 47.826 0.00 0.00 31.94 3.67
40 41 5.342866 GGATACCATAGTCCCTCTAACCAT 58.657 45.833 0.00 0.00 31.94 3.55
41 42 5.422650 GGATACCATAGTCCCTCTAACCATC 59.577 48.000 0.00 0.00 31.94 3.51
42 43 3.588569 ACCATAGTCCCTCTAACCATCC 58.411 50.000 0.00 0.00 31.94 3.51
43 44 3.051341 ACCATAGTCCCTCTAACCATCCA 60.051 47.826 0.00 0.00 31.94 3.41
44 45 3.973973 CCATAGTCCCTCTAACCATCCAA 59.026 47.826 0.00 0.00 31.94 3.53
45 46 4.202367 CCATAGTCCCTCTAACCATCCAAC 60.202 50.000 0.00 0.00 31.94 3.77
46 47 2.197465 AGTCCCTCTAACCATCCAACC 58.803 52.381 0.00 0.00 0.00 3.77
47 48 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
48 49 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
49 50 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
50 51 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
51 52 2.356125 CCTCTAACCATCCAACCACAGG 60.356 54.545 0.00 0.00 0.00 4.00
52 53 2.305927 CTCTAACCATCCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
76 77 1.972075 TGTCACCCGTAAGTTGATCCA 59.028 47.619 0.00 0.00 31.12 3.41
82 83 2.747446 CCCGTAAGTTGATCCAACCTTG 59.253 50.000 6.24 0.00 44.49 3.61
132 133 8.090831 TGCTAAAGCAAGAGTATCTATACCATG 58.909 37.037 1.27 0.00 46.28 3.66
236 237 3.119849 GGCGAGCAATTCACATGTTTAGT 60.120 43.478 0.00 0.00 0.00 2.24
237 238 3.848019 GCGAGCAATTCACATGTTTAGTG 59.152 43.478 0.00 0.00 38.32 2.74
322 323 8.395633 ACGTGCAATTGATTTACTTCCTAATAC 58.604 33.333 10.34 0.00 0.00 1.89
359 360 7.646922 GCACATACGCATTTACTAGTAGTAACT 59.353 37.037 20.08 13.43 40.12 2.24
379 380 3.184581 ACTGAAACGAGAGAAATTGCGAC 59.815 43.478 0.00 0.00 0.00 5.19
381 382 2.163818 AACGAGAGAAATTGCGACCA 57.836 45.000 0.00 0.00 0.00 4.02
389 391 1.720852 GAAATTGCGACCAACATGTGC 59.279 47.619 0.00 0.00 32.95 4.57
397 399 2.226200 CGACCAACATGTGCTTGAATGA 59.774 45.455 0.00 0.00 0.00 2.57
422 424 3.793827 AGGAGGACAATTGTATCCCCAAT 59.206 43.478 27.17 13.88 35.62 3.16
462 464 1.132643 GACTTAGACACCGATGCTCGT 59.867 52.381 5.15 0.00 38.40 4.18
468 470 3.187700 AGACACCGATGCTCGTATTTTC 58.812 45.455 5.15 0.00 38.40 2.29
503 505 0.734942 GTCTTCACGCGATTCCCGAA 60.735 55.000 15.93 4.47 41.76 4.30
506 508 1.787155 CTTCACGCGATTCCCGAATAG 59.213 52.381 15.93 0.00 41.76 1.73
523 525 1.404479 TAGGAAGGTGTGTGTGGCGT 61.404 55.000 0.00 0.00 0.00 5.68
588 593 0.110486 ATGTGACGGGCCAGTCTTTT 59.890 50.000 31.83 16.18 41.47 2.27
657 665 0.247814 GTGTATGTGCGTGCATCTGC 60.248 55.000 0.00 0.00 42.50 4.26
673 681 4.597079 CATCTGCGTTTGTACTGTGTTTT 58.403 39.130 0.00 0.00 0.00 2.43
674 682 5.743467 CATCTGCGTTTGTACTGTGTTTTA 58.257 37.500 0.00 0.00 0.00 1.52
675 683 5.798015 TCTGCGTTTGTACTGTGTTTTAA 57.202 34.783 0.00 0.00 0.00 1.52
676 684 5.802064 TCTGCGTTTGTACTGTGTTTTAAG 58.198 37.500 0.00 0.00 0.00 1.85
677 685 5.581479 TCTGCGTTTGTACTGTGTTTTAAGA 59.419 36.000 0.00 0.00 0.00 2.10
678 686 6.092396 TCTGCGTTTGTACTGTGTTTTAAGAA 59.908 34.615 0.00 0.00 0.00 2.52
679 687 6.609533 TGCGTTTGTACTGTGTTTTAAGAAA 58.390 32.000 0.00 0.00 0.00 2.52
680 688 7.082602 TGCGTTTGTACTGTGTTTTAAGAAAA 58.917 30.769 0.00 0.00 0.00 2.29
681 689 7.271653 TGCGTTTGTACTGTGTTTTAAGAAAAG 59.728 33.333 0.00 0.00 0.00 2.27
900 3213 4.676196 CGTTGAACGCAGGGTATAAGTAGT 60.676 45.833 4.26 0.00 33.65 2.73
1168 3492 1.301087 CACGCCAAACCTCGTACCA 60.301 57.895 0.00 0.00 37.14 3.25
1258 3582 2.472488 GCTTTTGTTTTCATGCGTCTGG 59.528 45.455 0.00 0.00 0.00 3.86
1416 3746 5.105513 TGTTGAAATGATCGGCTAGTGTCTA 60.106 40.000 0.00 0.00 0.00 2.59
1425 3755 2.385803 GGCTAGTGTCTAGCTGGGTTA 58.614 52.381 22.36 0.00 40.25 2.85
1525 3855 3.996363 GGATTTGGTCATGGCTTTTGAAC 59.004 43.478 0.00 0.00 0.00 3.18
1684 4014 8.708378 ACTTGATTCATCAGTGGATACTCATAA 58.292 33.333 0.00 0.00 38.19 1.90
1930 4264 1.691976 TGTAGAGGTGTTGACCCTGTG 59.308 52.381 0.00 0.00 44.40 3.66
1972 4308 6.343716 TGAAAATGCATACACAAGAATGGT 57.656 33.333 0.00 0.00 0.00 3.55
2118 4492 7.335422 CACATAACTGATTAGCACTTTCCTCTT 59.665 37.037 0.00 0.00 0.00 2.85
2215 4598 8.188799 AGCACATCAGAAAGTATTGATCATTTG 58.811 33.333 0.00 0.00 31.91 2.32
2899 5454 9.869757 TCTAAAATATGTCCATATACATCCGTG 57.130 33.333 0.41 0.00 40.52 4.94
2920 5475 6.020121 CCGTGTGTAGTCCGTATTAAAATCTG 60.020 42.308 0.00 0.00 0.00 2.90
3659 6640 7.177878 AGTACTGATTTGATGATTTCCACCTT 58.822 34.615 0.00 0.00 0.00 3.50
3660 6641 6.923199 ACTGATTTGATGATTTCCACCTTT 57.077 33.333 0.00 0.00 0.00 3.11
3771 6752 7.878477 TCACTATAACTGTTCAAAAGGTACG 57.122 36.000 0.00 0.00 0.00 3.67
4119 7111 1.236616 TGCCGTGCAGATCAAAGGTG 61.237 55.000 0.00 0.00 33.32 4.00
4586 7608 8.706492 GTAGTGCTACTACTATCGATGATACT 57.294 38.462 8.54 2.59 45.70 2.12
4587 7609 9.800433 GTAGTGCTACTACTATCGATGATACTA 57.200 37.037 8.54 1.72 45.70 1.82
4588 7610 8.936070 AGTGCTACTACTATCGATGATACTAG 57.064 38.462 8.54 0.00 0.00 2.57
4589 7611 7.493320 AGTGCTACTACTATCGATGATACTAGC 59.507 40.741 8.54 12.52 0.00 3.42
4590 7612 7.278203 GTGCTACTACTATCGATGATACTAGCA 59.722 40.741 17.84 17.84 0.00 3.49
4591 7613 7.822822 TGCTACTACTATCGATGATACTAGCAA 59.177 37.037 18.78 8.84 0.00 3.91
4592 7614 8.832521 GCTACTACTATCGATGATACTAGCAAT 58.167 37.037 8.54 0.00 0.00 3.56
4774 8331 6.610020 TGTTGTGCACTAGTAATATACTCCCT 59.390 38.462 19.41 0.00 40.14 4.20
4782 8339 5.336491 AGTAATATACTCCCTCCGTTCCT 57.664 43.478 0.00 0.00 32.47 3.36
4783 8340 6.460103 AGTAATATACTCCCTCCGTTCCTA 57.540 41.667 0.00 0.00 32.47 2.94
4787 8344 9.247861 GTAATATACTCCCTCCGTTCCTAAATA 57.752 37.037 0.00 0.00 0.00 1.40
4788 8345 8.912614 AATATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
4794 8351 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4796 8353 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4797 8354 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4816 8373 9.274206 AGTCTTTTTAGAGATTCCACTACAAAC 57.726 33.333 0.00 0.00 0.00 2.93
4820 8377 8.752766 TTTTAGAGATTCCACTACAAACTACG 57.247 34.615 0.00 0.00 0.00 3.51
4822 8379 8.565896 TTAGAGATTCCACTACAAACTACGTA 57.434 34.615 0.00 0.00 0.00 3.57
4823 8380 6.850555 AGAGATTCCACTACAAACTACGTAC 58.149 40.000 0.00 0.00 0.00 3.67
4824 8381 5.634896 AGATTCCACTACAAACTACGTACG 58.365 41.667 15.01 15.01 0.00 3.67
4825 8382 3.829886 TCCACTACAAACTACGTACGG 57.170 47.619 21.06 5.00 0.00 4.02
4826 8383 3.407698 TCCACTACAAACTACGTACGGA 58.592 45.455 21.06 10.81 0.00 4.69
4827 8384 4.009675 TCCACTACAAACTACGTACGGAT 58.990 43.478 21.06 1.34 0.00 4.18
4828 8385 4.100529 CCACTACAAACTACGTACGGATG 58.899 47.826 21.06 9.21 0.00 3.51
4829 8386 4.379813 CCACTACAAACTACGTACGGATGT 60.380 45.833 21.06 14.94 0.00 3.06
4830 8387 5.163764 CCACTACAAACTACGTACGGATGTA 60.164 44.000 21.06 15.28 0.00 2.29
4832 8389 7.254761 CCACTACAAACTACGTACGGATGTATA 60.255 40.741 21.06 0.30 32.11 1.47
4834 8391 9.489084 ACTACAAACTACGTACGGATGTATATA 57.511 33.333 21.06 0.00 32.11 0.86
4839 9889 8.783833 AACTACGTACGGATGTATATAGACAT 57.216 34.615 21.06 12.70 42.82 3.06
4869 9919 7.934855 AGAATGTAGATTCACTCATTTTGCT 57.065 32.000 14.46 0.00 40.59 3.91
4870 9920 7.983307 AGAATGTAGATTCACTCATTTTGCTC 58.017 34.615 14.46 0.00 40.59 4.26
4873 9923 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4874 9924 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4885 10506 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
4886 10507 4.848562 TTGCTCCGTATGTAGTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
4887 10508 3.828921 TGCTCCGTATGTAGTCCATAGT 58.171 45.455 0.00 0.00 36.71 2.12
4888 10509 3.568430 TGCTCCGTATGTAGTCCATAGTG 59.432 47.826 0.00 0.00 36.71 2.74
4891 10512 3.955551 TCCGTATGTAGTCCATAGTGCAA 59.044 43.478 0.00 0.00 36.71 4.08
4893 10514 4.923871 CCGTATGTAGTCCATAGTGCAATC 59.076 45.833 0.00 0.00 36.71 2.67
4895 10516 5.859114 CGTATGTAGTCCATAGTGCAATCTC 59.141 44.000 0.00 0.00 36.71 2.75
4896 10517 6.294231 CGTATGTAGTCCATAGTGCAATCTCT 60.294 42.308 0.00 0.00 36.71 3.10
4898 10519 7.603180 ATGTAGTCCATAGTGCAATCTCTAA 57.397 36.000 0.00 0.00 29.82 2.10
4899 10520 7.418337 TGTAGTCCATAGTGCAATCTCTAAA 57.582 36.000 0.00 0.00 0.00 1.85
4901 10522 8.318412 TGTAGTCCATAGTGCAATCTCTAAAAA 58.682 33.333 0.00 0.00 0.00 1.94
4927 10815 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4936 10824 6.460103 AGGAACGGAGGGAGTATATACTTA 57.540 41.667 16.46 0.00 36.50 2.24
4987 11151 4.234530 GCAAAAAGCCATATAGAGCAGG 57.765 45.455 0.15 0.00 37.23 4.85
4995 11428 4.412199 AGCCATATAGAGCAGGGTGTTTTA 59.588 41.667 0.15 0.00 0.00 1.52
4997 11430 5.770162 GCCATATAGAGCAGGGTGTTTTATT 59.230 40.000 0.00 0.00 0.00 1.40
4998 11431 6.265422 GCCATATAGAGCAGGGTGTTTTATTT 59.735 38.462 0.00 0.00 0.00 1.40
4999 11432 7.447238 GCCATATAGAGCAGGGTGTTTTATTTA 59.553 37.037 0.00 0.00 0.00 1.40
5000 11433 9.520515 CCATATAGAGCAGGGTGTTTTATTTAT 57.479 33.333 0.00 0.00 0.00 1.40
5094 11586 5.009210 ACGATAACCAAAAGCAGCAAAACTA 59.991 36.000 0.00 0.00 0.00 2.24
5096 11588 6.033831 CGATAACCAAAAGCAGCAAAACTATG 59.966 38.462 0.00 0.00 0.00 2.23
5099 11591 3.676646 CCAAAAGCAGCAAAACTATGAGC 59.323 43.478 0.00 0.00 0.00 4.26
5100 11592 4.553323 CAAAAGCAGCAAAACTATGAGCT 58.447 39.130 0.00 0.00 37.95 4.09
5101 11593 5.335897 CCAAAAGCAGCAAAACTATGAGCTA 60.336 40.000 0.00 0.00 35.19 3.32
5102 11594 4.954092 AAGCAGCAAAACTATGAGCTAC 57.046 40.909 0.00 0.00 35.19 3.58
5103 11595 3.942829 AGCAGCAAAACTATGAGCTACA 58.057 40.909 0.00 0.00 35.19 2.74
5104 11596 3.937706 AGCAGCAAAACTATGAGCTACAG 59.062 43.478 0.00 0.00 35.19 2.74
5106 11598 4.436584 GCAGCAAAACTATGAGCTACAGTG 60.437 45.833 0.00 0.00 35.19 3.66
5109 11601 6.368791 CAGCAAAACTATGAGCTACAGTGTTA 59.631 38.462 0.00 0.00 35.19 2.41
5110 11602 6.591834 AGCAAAACTATGAGCTACAGTGTTAG 59.408 38.462 0.00 0.00 35.19 2.34
5111 11603 6.369065 GCAAAACTATGAGCTACAGTGTTAGT 59.631 38.462 0.00 0.00 31.45 2.24
5115 11607 7.698506 ACTATGAGCTACAGTGTTAGTGTTA 57.301 36.000 0.00 0.00 33.15 2.41
5116 11608 7.763356 ACTATGAGCTACAGTGTTAGTGTTAG 58.237 38.462 0.00 0.14 33.15 2.34
5117 11609 6.835819 ATGAGCTACAGTGTTAGTGTTAGA 57.164 37.500 0.00 0.00 33.15 2.10
5118 11610 6.255596 TGAGCTACAGTGTTAGTGTTAGAG 57.744 41.667 0.00 0.00 33.15 2.43
5119 11611 5.768662 TGAGCTACAGTGTTAGTGTTAGAGT 59.231 40.000 0.00 0.00 33.15 3.24
5120 11612 6.938596 TGAGCTACAGTGTTAGTGTTAGAGTA 59.061 38.462 0.00 0.00 33.15 2.59
5121 11613 7.610692 TGAGCTACAGTGTTAGTGTTAGAGTAT 59.389 37.037 0.00 0.00 33.15 2.12
5122 11614 7.763356 AGCTACAGTGTTAGTGTTAGAGTATG 58.237 38.462 0.00 0.00 33.15 2.39
5127 11619 9.856488 ACAGTGTTAGTGTTAGAGTATGTAATG 57.144 33.333 0.00 0.00 0.00 1.90
5129 11621 8.475639 AGTGTTAGTGTTAGAGTATGTAATGGG 58.524 37.037 0.00 0.00 0.00 4.00
5130 11622 7.224167 GTGTTAGTGTTAGAGTATGTAATGGGC 59.776 40.741 0.00 0.00 0.00 5.36
5131 11623 5.291905 AGTGTTAGAGTATGTAATGGGCC 57.708 43.478 0.00 0.00 0.00 5.80
5132 11624 4.969359 AGTGTTAGAGTATGTAATGGGCCT 59.031 41.667 4.53 0.00 0.00 5.19
5133 11625 6.141083 AGTGTTAGAGTATGTAATGGGCCTA 58.859 40.000 4.53 0.00 0.00 3.93
5134 11626 6.614087 AGTGTTAGAGTATGTAATGGGCCTAA 59.386 38.462 4.53 0.00 0.00 2.69
5135 11627 7.292591 AGTGTTAGAGTATGTAATGGGCCTAAT 59.707 37.037 4.53 0.00 0.00 1.73
5136 11628 7.387948 GTGTTAGAGTATGTAATGGGCCTAATG 59.612 40.741 4.53 0.00 0.00 1.90
5147 11639 4.894201 CCTAATGGCCTGAGCTGG 57.106 61.111 3.32 0.00 39.73 4.85
5155 11647 1.005630 GCCTGAGCTGGCGGTATAG 60.006 63.158 0.00 0.00 43.74 1.31
5156 11648 1.005630 CCTGAGCTGGCGGTATAGC 60.006 63.158 0.00 0.00 40.18 2.97
5167 11659 3.729862 GCGGTATAGCCTGTTAGTCTT 57.270 47.619 0.00 0.00 34.25 3.01
5168 11660 4.843220 GCGGTATAGCCTGTTAGTCTTA 57.157 45.455 0.00 0.00 34.25 2.10
5169 11661 4.796369 GCGGTATAGCCTGTTAGTCTTAG 58.204 47.826 0.00 0.00 34.25 2.18
5170 11662 4.321082 GCGGTATAGCCTGTTAGTCTTAGG 60.321 50.000 0.00 0.00 34.25 2.69
5171 11663 4.217983 CGGTATAGCCTGTTAGTCTTAGGG 59.782 50.000 0.00 0.00 34.25 3.53
5172 11664 5.146298 GGTATAGCCTGTTAGTCTTAGGGT 58.854 45.833 0.00 0.00 43.99 4.34
5173 11665 5.601729 GGTATAGCCTGTTAGTCTTAGGGTT 59.398 44.000 0.00 0.00 42.00 4.11
5174 11666 6.779539 GGTATAGCCTGTTAGTCTTAGGGTTA 59.220 42.308 0.00 0.00 42.00 2.85
5175 11667 7.288621 GGTATAGCCTGTTAGTCTTAGGGTTAA 59.711 40.741 0.00 0.00 42.00 2.01
5176 11668 7.932683 ATAGCCTGTTAGTCTTAGGGTTAAT 57.067 36.000 0.00 0.00 42.00 1.40
5177 11669 6.638021 AGCCTGTTAGTCTTAGGGTTAATT 57.362 37.500 0.00 0.00 39.12 1.40
5178 11670 7.744678 AGCCTGTTAGTCTTAGGGTTAATTA 57.255 36.000 0.00 0.00 39.12 1.40
5179 11671 7.793036 AGCCTGTTAGTCTTAGGGTTAATTAG 58.207 38.462 0.00 0.00 39.12 1.73
5180 11672 7.622479 AGCCTGTTAGTCTTAGGGTTAATTAGA 59.378 37.037 0.00 0.00 39.12 2.10
5181 11673 7.927092 GCCTGTTAGTCTTAGGGTTAATTAGAG 59.073 40.741 0.00 0.00 32.15 2.43
5182 11674 9.198475 CCTGTTAGTCTTAGGGTTAATTAGAGA 57.802 37.037 0.00 0.00 0.00 3.10
5188 11680 9.382307 AGTCTTAGGGTTAATTAGAGATAAGGG 57.618 37.037 8.51 0.00 0.00 3.95
5189 11681 9.156940 GTCTTAGGGTTAATTAGAGATAAGGGT 57.843 37.037 8.51 0.00 0.00 4.34
5190 11682 9.377238 TCTTAGGGTTAATTAGAGATAAGGGTC 57.623 37.037 8.51 0.00 0.00 4.46
5191 11683 6.667558 AGGGTTAATTAGAGATAAGGGTCG 57.332 41.667 0.00 0.00 0.00 4.79
5192 11684 5.011840 AGGGTTAATTAGAGATAAGGGTCGC 59.988 44.000 0.00 0.00 0.00 5.19
5193 11685 5.011840 GGGTTAATTAGAGATAAGGGTCGCT 59.988 44.000 0.00 0.00 32.84 4.93
5194 11686 6.464039 GGGTTAATTAGAGATAAGGGTCGCTT 60.464 42.308 7.38 7.38 30.69 4.68
5195 11687 6.424207 GGTTAATTAGAGATAAGGGTCGCTTG 59.576 42.308 12.19 0.00 30.69 4.01
5196 11688 5.615925 AATTAGAGATAAGGGTCGCTTGT 57.384 39.130 12.19 5.50 30.69 3.16
5197 11689 5.615925 ATTAGAGATAAGGGTCGCTTGTT 57.384 39.130 12.19 0.00 30.69 2.83
5198 11690 3.983044 AGAGATAAGGGTCGCTTGTTT 57.017 42.857 12.19 0.85 0.00 2.83
5199 11691 6.534475 TTAGAGATAAGGGTCGCTTGTTTA 57.466 37.500 12.19 0.00 30.69 2.01
5200 11692 5.012328 AGAGATAAGGGTCGCTTGTTTAG 57.988 43.478 12.19 0.00 0.00 1.85
5201 11693 4.120589 GAGATAAGGGTCGCTTGTTTAGG 58.879 47.826 12.19 0.00 0.00 2.69
5202 11694 2.773993 TAAGGGTCGCTTGTTTAGGG 57.226 50.000 12.19 0.00 38.13 3.53
5203 11695 0.037734 AAGGGTCGCTTGTTTAGGGG 59.962 55.000 0.57 0.00 37.41 4.79
5208 11700 1.804748 GTCGCTTGTTTAGGGGTCAAG 59.195 52.381 0.00 0.00 37.41 3.02
5211 11703 3.071312 TCGCTTGTTTAGGGGTCAAGTAA 59.929 43.478 0.00 0.00 37.41 2.24
5213 11705 3.190744 GCTTGTTTAGGGGTCAAGTAAGC 59.809 47.826 0.00 0.00 0.00 3.09
5216 11708 3.396611 TGTTTAGGGGTCAAGTAAGCCTT 59.603 43.478 0.00 0.00 37.00 4.35
5228 11720 3.580084 AGCCTTGCTTGGGAGTCA 58.420 55.556 0.00 0.00 33.89 3.41
5241 11733 3.858135 TGGGAGTCAAGTAAACCTCTCT 58.142 45.455 0.00 0.00 0.00 3.10
5242 11734 5.006896 TGGGAGTCAAGTAAACCTCTCTA 57.993 43.478 0.00 0.00 0.00 2.43
5243 11735 5.590818 TGGGAGTCAAGTAAACCTCTCTAT 58.409 41.667 0.00 0.00 0.00 1.98
5244 11736 6.738635 TGGGAGTCAAGTAAACCTCTCTATA 58.261 40.000 0.00 0.00 0.00 1.31
5245 11737 7.363031 TGGGAGTCAAGTAAACCTCTCTATAT 58.637 38.462 0.00 0.00 0.00 0.86
5272 11764 7.775053 AGAGAGGAGATGTATCAATCTAACC 57.225 40.000 0.00 0.00 37.03 2.85
5273 11765 7.301420 AGAGAGGAGATGTATCAATCTAACCA 58.699 38.462 0.00 0.00 37.03 3.67
5274 11766 7.786943 AGAGAGGAGATGTATCAATCTAACCAA 59.213 37.037 0.00 0.00 37.03 3.67
5275 11767 7.961351 AGAGGAGATGTATCAATCTAACCAAG 58.039 38.462 0.00 0.00 37.03 3.61
5276 11768 6.529220 AGGAGATGTATCAATCTAACCAAGC 58.471 40.000 0.00 0.00 37.03 4.01
5277 11769 6.100279 AGGAGATGTATCAATCTAACCAAGCA 59.900 38.462 0.00 0.00 37.03 3.91
5278 11770 6.767902 GGAGATGTATCAATCTAACCAAGCAA 59.232 38.462 0.00 0.00 37.03 3.91
5279 11771 7.041508 GGAGATGTATCAATCTAACCAAGCAAG 60.042 40.741 0.00 0.00 37.03 4.01
5280 11772 7.568349 AGATGTATCAATCTAACCAAGCAAGA 58.432 34.615 0.00 0.00 35.09 3.02
5282 11774 8.757982 ATGTATCAATCTAACCAAGCAAGAAT 57.242 30.769 0.00 0.00 0.00 2.40
5289 11781 9.565213 CAATCTAACCAAGCAAGAATTAAGAAG 57.435 33.333 0.00 0.00 0.00 2.85
5290 11782 7.687941 TCTAACCAAGCAAGAATTAAGAAGG 57.312 36.000 0.00 0.00 0.00 3.46
5291 11783 7.458397 TCTAACCAAGCAAGAATTAAGAAGGA 58.542 34.615 0.00 0.00 0.00 3.36
5292 11784 6.976934 AACCAAGCAAGAATTAAGAAGGAA 57.023 33.333 0.00 0.00 0.00 3.36
5295 11787 7.606349 ACCAAGCAAGAATTAAGAAGGAAATC 58.394 34.615 0.00 0.00 0.00 2.17
5296 11788 7.038048 CCAAGCAAGAATTAAGAAGGAAATCC 58.962 38.462 0.00 0.00 0.00 3.01
5297 11789 6.782082 AGCAAGAATTAAGAAGGAAATCCC 57.218 37.500 0.00 0.00 36.42 3.85
5310 11802 2.103373 GAAATCCCTTTCCTCTTGCCC 58.897 52.381 0.00 0.00 35.69 5.36
5313 11805 2.751837 CCTTTCCTCTTGCCCGGC 60.752 66.667 1.04 1.04 0.00 6.13
5314 11806 2.751837 CTTTCCTCTTGCCCGGCC 60.752 66.667 7.03 0.00 0.00 6.13
5315 11807 3.567579 CTTTCCTCTTGCCCGGCCA 62.568 63.158 7.03 0.00 0.00 5.36
5317 11809 3.643595 TTCCTCTTGCCCGGCCATG 62.644 63.158 7.03 0.00 0.00 3.66
5325 11817 4.799824 CCCGGCCATGCGCAAAAG 62.800 66.667 17.11 7.33 40.31 2.27
5327 11819 4.054825 CGGCCATGCGCAAAAGGT 62.055 61.111 17.11 0.00 40.31 3.50
5328 11820 2.125952 GGCCATGCGCAAAAGGTC 60.126 61.111 17.11 15.40 40.31 3.85
5329 11821 2.125952 GCCATGCGCAAAAGGTCC 60.126 61.111 17.11 1.38 37.47 4.46
5330 11822 2.573340 CCATGCGCAAAAGGTCCC 59.427 61.111 17.11 0.00 0.00 4.46
5332 11824 3.061848 ATGCGCAAAAGGTCCCCG 61.062 61.111 17.11 0.00 0.00 5.73
5337 11829 4.338710 CAAAAGGTCCCCGGCCGA 62.339 66.667 30.73 2.89 0.00 5.54
5338 11830 4.340246 AAAAGGTCCCCGGCCGAC 62.340 66.667 30.73 17.66 0.00 4.79
5356 11848 4.214327 CCTCTCGCGCCCTCCTTC 62.214 72.222 0.00 0.00 0.00 3.46
5357 11849 3.144193 CTCTCGCGCCCTCCTTCT 61.144 66.667 0.00 0.00 0.00 2.85
5359 11851 1.791103 CTCTCGCGCCCTCCTTCTAG 61.791 65.000 0.00 0.00 0.00 2.43
5360 11852 3.492311 CTCGCGCCCTCCTTCTAGC 62.492 68.421 0.00 0.00 0.00 3.42
5361 11853 3.838271 CGCGCCCTCCTTCTAGCA 61.838 66.667 0.00 0.00 0.00 3.49
5362 11854 2.107953 GCGCCCTCCTTCTAGCAG 59.892 66.667 0.00 0.00 0.00 4.24
5363 11855 2.107953 CGCCCTCCTTCTAGCAGC 59.892 66.667 0.00 0.00 0.00 5.25
5364 11856 2.107953 GCCCTCCTTCTAGCAGCG 59.892 66.667 0.00 0.00 0.00 5.18
5366 11858 2.107953 CCTCCTTCTAGCAGCGCC 59.892 66.667 2.29 0.00 0.00 6.53
5368 11860 1.445095 CTCCTTCTAGCAGCGCCAT 59.555 57.895 2.29 0.00 0.00 4.40
5369 11861 0.676184 CTCCTTCTAGCAGCGCCATA 59.324 55.000 2.29 0.00 0.00 2.74
5371 11863 1.202533 TCCTTCTAGCAGCGCCATAAC 60.203 52.381 2.29 0.00 0.00 1.89
5373 11865 2.279741 CTTCTAGCAGCGCCATAACAA 58.720 47.619 2.29 0.00 0.00 2.83
5374 11866 2.620251 TCTAGCAGCGCCATAACAAT 57.380 45.000 2.29 0.00 0.00 2.71
5375 11867 2.917933 TCTAGCAGCGCCATAACAATT 58.082 42.857 2.29 0.00 0.00 2.32
5376 11868 3.278574 TCTAGCAGCGCCATAACAATTT 58.721 40.909 2.29 0.00 0.00 1.82
5378 11870 1.135024 AGCAGCGCCATAACAATTTGG 60.135 47.619 2.29 0.00 36.03 3.28
5379 11871 1.404047 GCAGCGCCATAACAATTTGGT 60.404 47.619 2.29 0.00 35.34 3.67
5380 11872 2.159310 GCAGCGCCATAACAATTTGGTA 60.159 45.455 2.29 0.00 35.34 3.25
5381 11873 3.694734 CAGCGCCATAACAATTTGGTAG 58.305 45.455 2.29 0.00 35.34 3.18
5382 11874 2.099098 AGCGCCATAACAATTTGGTAGC 59.901 45.455 2.29 7.81 38.31 3.58
5385 11877 3.447742 GCCATAACAATTTGGTAGCAGC 58.552 45.455 0.07 0.00 35.34 5.25
5386 11878 3.131046 GCCATAACAATTTGGTAGCAGCT 59.869 43.478 0.00 0.00 35.34 4.24
5387 11879 4.338118 GCCATAACAATTTGGTAGCAGCTA 59.662 41.667 0.00 0.00 35.34 3.32
5388 11880 5.506317 GCCATAACAATTTGGTAGCAGCTAG 60.506 44.000 1.02 0.00 35.34 3.42
5389 11881 5.506317 CCATAACAATTTGGTAGCAGCTAGC 60.506 44.000 22.53 22.53 46.19 3.42
5398 11890 4.598257 GCAGCTAGCTTCGGTTCA 57.402 55.556 16.46 0.00 41.15 3.18
5401 11893 1.328986 GCAGCTAGCTTCGGTTCAATC 59.671 52.381 16.46 0.00 41.15 2.67
5403 11895 3.201290 CAGCTAGCTTCGGTTCAATCAT 58.799 45.455 16.46 0.00 0.00 2.45
5404 11896 3.002042 CAGCTAGCTTCGGTTCAATCATG 59.998 47.826 16.46 0.00 0.00 3.07
5405 11897 2.939103 GCTAGCTTCGGTTCAATCATGT 59.061 45.455 7.70 0.00 0.00 3.21
5406 11898 3.001736 GCTAGCTTCGGTTCAATCATGTC 59.998 47.826 7.70 0.00 0.00 3.06
5408 11900 3.679389 AGCTTCGGTTCAATCATGTCTT 58.321 40.909 0.00 0.00 0.00 3.01
5409 11901 3.686726 AGCTTCGGTTCAATCATGTCTTC 59.313 43.478 0.00 0.00 0.00 2.87
5411 11903 4.670221 GCTTCGGTTCAATCATGTCTTCAC 60.670 45.833 0.00 0.00 0.00 3.18
5412 11904 3.334691 TCGGTTCAATCATGTCTTCACC 58.665 45.455 0.00 0.00 0.00 4.02
5414 11906 2.159517 GGTTCAATCATGTCTTCACCGC 60.160 50.000 0.00 0.00 0.00 5.68
5415 11907 1.737838 TCAATCATGTCTTCACCGCC 58.262 50.000 0.00 0.00 0.00 6.13
5416 11908 0.374758 CAATCATGTCTTCACCGCCG 59.625 55.000 0.00 0.00 0.00 6.46
5418 11910 3.499737 CATGTCTTCACCGCCGCC 61.500 66.667 0.00 0.00 0.00 6.13
5419 11911 4.778143 ATGTCTTCACCGCCGCCC 62.778 66.667 0.00 0.00 0.00 6.13
5432 11924 2.434359 CGCCCAACCCGTCTCTTC 60.434 66.667 0.00 0.00 0.00 2.87
5433 11925 2.046217 GCCCAACCCGTCTCTTCC 60.046 66.667 0.00 0.00 0.00 3.46
5434 11926 2.264794 CCCAACCCGTCTCTTCCG 59.735 66.667 0.00 0.00 0.00 4.30
5435 11927 2.434359 CCAACCCGTCTCTTCCGC 60.434 66.667 0.00 0.00 0.00 5.54
5436 11928 2.657237 CAACCCGTCTCTTCCGCT 59.343 61.111 0.00 0.00 0.00 5.52
5437 11929 1.738099 CAACCCGTCTCTTCCGCTG 60.738 63.158 0.00 0.00 0.00 5.18
5438 11930 3.591254 AACCCGTCTCTTCCGCTGC 62.591 63.158 0.00 0.00 0.00 5.25
5482 11974 3.827898 GCCGTCCTCACCTCGGAG 61.828 72.222 7.01 0.00 46.05 4.63
5493 11985 2.885861 CTCGGAGGAGGTGTTCGG 59.114 66.667 0.00 0.00 36.61 4.30
5494 11986 2.678934 TCGGAGGAGGTGTTCGGG 60.679 66.667 0.00 0.00 0.00 5.14
5495 11987 3.771160 CGGAGGAGGTGTTCGGGG 61.771 72.222 0.00 0.00 0.00 5.73
5496 11988 2.606826 GGAGGAGGTGTTCGGGGT 60.607 66.667 0.00 0.00 0.00 4.95
5497 11989 2.663196 GAGGAGGTGTTCGGGGTG 59.337 66.667 0.00 0.00 0.00 4.61
5498 11990 3.607370 GAGGAGGTGTTCGGGGTGC 62.607 68.421 0.00 0.00 0.00 5.01
5499 11991 3.637273 GGAGGTGTTCGGGGTGCT 61.637 66.667 0.00 0.00 0.00 4.40
5500 11992 2.358737 GAGGTGTTCGGGGTGCTG 60.359 66.667 0.00 0.00 0.00 4.41
5501 11993 4.643387 AGGTGTTCGGGGTGCTGC 62.643 66.667 0.00 0.00 0.00 5.25
5512 12004 2.436115 GTGCTGCGGGACCTAACC 60.436 66.667 5.77 0.00 0.00 2.85
5513 12005 3.712907 TGCTGCGGGACCTAACCC 61.713 66.667 0.00 0.00 45.92 4.11
5529 12021 2.765807 CCAGGCGGTCCAGGAGAT 60.766 66.667 0.00 0.00 41.26 2.75
5530 12022 2.801631 CCAGGCGGTCCAGGAGATC 61.802 68.421 0.00 0.00 41.26 2.75
5531 12023 2.444895 AGGCGGTCCAGGAGATCC 60.445 66.667 0.00 0.00 33.74 3.36
5533 12025 2.501610 GCGGTCCAGGAGATCCAC 59.498 66.667 0.92 0.00 38.89 4.02
5534 12026 3.095347 GCGGTCCAGGAGATCCACC 62.095 68.421 0.92 0.00 38.89 4.61
5542 12034 2.983229 CAGGAGATCCACCTGTTCTTG 58.017 52.381 21.43 2.00 46.71 3.02
5543 12035 1.912043 AGGAGATCCACCTGTTCTTGG 59.088 52.381 8.07 0.00 38.89 3.61
5544 12036 1.680249 GGAGATCCACCTGTTCTTGGC 60.680 57.143 0.00 0.00 35.64 4.52
5546 12038 1.002134 ATCCACCTGTTCTTGGCCG 60.002 57.895 0.00 0.00 32.37 6.13
5547 12039 2.484287 ATCCACCTGTTCTTGGCCGG 62.484 60.000 0.00 0.00 32.37 6.13
5548 12040 2.672996 CACCTGTTCTTGGCCGGG 60.673 66.667 2.18 0.00 0.00 5.73
5549 12041 3.175710 ACCTGTTCTTGGCCGGGT 61.176 61.111 2.18 0.00 35.46 5.28
5550 12042 2.359975 CCTGTTCTTGGCCGGGTC 60.360 66.667 2.18 0.00 0.00 4.46
5552 12044 2.852075 TGTTCTTGGCCGGGTCCT 60.852 61.111 2.18 0.00 0.00 3.85
5555 12047 2.652095 TTCTTGGCCGGGTCCTACG 61.652 63.158 2.18 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.833055 TATCCCCAGTCCACCAGGGT 61.833 60.000 0.00 0.00 41.16 4.34
5 6 0.620410 TGGTATCCCCAGTCCACCAG 60.620 60.000 0.00 0.00 38.72 4.00
6 7 1.476631 TGGTATCCCCAGTCCACCA 59.523 57.895 0.00 0.00 38.72 4.17
7 8 4.492232 TGGTATCCCCAGTCCACC 57.508 61.111 0.00 0.00 38.72 4.61
17 18 4.748701 TGGTTAGAGGGACTATGGTATCC 58.251 47.826 0.00 0.00 41.55 2.59
18 19 5.422650 GGATGGTTAGAGGGACTATGGTATC 59.577 48.000 0.00 0.00 41.55 2.24
19 20 5.162760 TGGATGGTTAGAGGGACTATGGTAT 60.163 44.000 0.00 0.00 41.55 2.73
20 21 4.171243 TGGATGGTTAGAGGGACTATGGTA 59.829 45.833 0.00 0.00 41.55 3.25
21 22 3.051341 TGGATGGTTAGAGGGACTATGGT 60.051 47.826 0.00 0.00 41.55 3.55
22 23 3.587498 TGGATGGTTAGAGGGACTATGG 58.413 50.000 0.00 0.00 41.55 2.74
23 24 4.202367 GGTTGGATGGTTAGAGGGACTATG 60.202 50.000 0.00 0.00 41.55 2.23
24 25 3.974642 GGTTGGATGGTTAGAGGGACTAT 59.025 47.826 0.00 0.00 41.55 2.12
25 26 3.246203 TGGTTGGATGGTTAGAGGGACTA 60.246 47.826 0.00 0.00 41.55 2.59
27 28 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
28 29 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
29 30 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
30 31 2.356125 CCTGTGGTTGGATGGTTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
31 32 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
32 33 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
33 34 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
51 52 1.263217 CAACTTACGGGTGACAGCAAC 59.737 52.381 7.01 0.00 33.74 4.17
52 53 1.139256 TCAACTTACGGGTGACAGCAA 59.861 47.619 7.01 0.00 36.62 3.91
76 77 9.850198 TTAAAGGTGTAACAATACTACAAGGTT 57.150 29.630 0.00 0.00 39.98 3.50
276 277 3.866910 CGTTAATTACGTGGGTAGTGCAT 59.133 43.478 0.00 0.00 45.14 3.96
322 323 2.031930 TGCGTATGTGCATGCATGTTAG 59.968 45.455 25.64 16.21 40.62 2.34
359 360 2.478894 GGTCGCAATTTCTCTCGTTTCA 59.521 45.455 0.00 0.00 0.00 2.69
379 380 5.125900 TCCTAATCATTCAAGCACATGTTGG 59.874 40.000 0.00 0.00 0.00 3.77
381 382 5.359009 CCTCCTAATCATTCAAGCACATGTT 59.641 40.000 0.00 0.00 0.00 2.71
389 391 7.636150 ACAATTGTCCTCCTAATCATTCAAG 57.364 36.000 4.92 0.00 0.00 3.02
397 399 4.981647 TGGGGATACAATTGTCCTCCTAAT 59.018 41.667 26.90 12.06 32.27 1.73
422 424 1.846124 GGGACTTGACCCTGGTGGA 60.846 63.158 0.00 0.00 45.90 4.02
468 470 6.018669 GCGTGAAGACCTGAAATAAATCTAGG 60.019 42.308 0.00 0.00 34.70 3.02
503 505 0.036388 CGCCACACACACCTTCCTAT 60.036 55.000 0.00 0.00 0.00 2.57
506 508 2.203153 ACGCCACACACACCTTCC 60.203 61.111 0.00 0.00 0.00 3.46
515 517 1.873591 AGATTGACAAAGACGCCACAC 59.126 47.619 0.00 0.00 0.00 3.82
523 525 7.991084 AACATCATCTTGAGATTGACAAAGA 57.009 32.000 0.00 0.00 31.21 2.52
553 555 5.221322 CCGTCACATCATCTTGAGATCCTTA 60.221 44.000 0.00 0.00 31.21 2.69
588 593 6.012069 ACATCCTACCTCTATGAGCATCTCTA 60.012 42.308 0.00 0.00 34.92 2.43
657 665 8.883789 TCTTTTCTTAAAACACAGTACAAACG 57.116 30.769 0.00 0.00 0.00 3.60
900 3213 1.809939 ATTAGCCCTTTGGGTGCCCA 61.810 55.000 5.73 5.73 46.51 5.36
909 3229 4.718940 CAACGATTTGGATTAGCCCTTT 57.281 40.909 0.00 0.00 34.97 3.11
922 3242 5.527582 AGATTATTTAGAGCGCCAACGATTT 59.472 36.000 2.29 0.00 43.93 2.17
1200 3524 0.242825 CCATGGTTGTTGCAGCTCAG 59.757 55.000 2.57 0.00 0.00 3.35
1525 3855 4.806640 AGAAGCCTCTTTCTTCTCTCAG 57.193 45.455 0.00 0.00 44.97 3.35
1684 4014 4.700213 AGTTAAGCACGTTCAATTATGCCT 59.300 37.500 0.00 0.00 38.92 4.75
1930 4264 8.876790 CATTTTCAATAAAAGGAGGAGAATTGC 58.123 33.333 0.00 0.00 38.36 3.56
1972 4308 9.836864 AATGAGAATATTGTGACTATTACTGCA 57.163 29.630 0.00 0.00 0.00 4.41
2118 4492 4.945543 AGCACAAAGATGATACATCAGCAA 59.054 37.500 9.88 0.00 45.12 3.91
2215 4598 4.663636 AGCTACAAAAATGCAGTCGTAC 57.336 40.909 0.00 0.00 0.00 3.67
2218 4601 2.658325 GCAAGCTACAAAAATGCAGTCG 59.342 45.455 0.00 0.00 37.00 4.18
2333 4716 8.420222 TGCTTCTCAAATGTGAAGGAAAATAAA 58.580 29.630 20.55 0.00 40.96 1.40
2749 5302 8.738645 ATAATGTCTCTTTTACAGAATGGGTC 57.261 34.615 0.00 0.00 43.62 4.46
2920 5475 9.628746 TCCGTTTCAAAATATAAGCCTTTTTAC 57.371 29.630 0.00 0.00 0.00 2.01
2938 5493 4.800023 TGAGATATACTCCCTCCGTTTCA 58.200 43.478 0.00 0.00 44.34 2.69
3483 6453 7.307870 GCAAAAACATTGTGAATGGCAGATTAA 60.308 33.333 0.00 0.00 43.21 1.40
3659 6640 6.071952 GCATTCAAGAAATCAGGAACCTACAA 60.072 38.462 0.00 0.00 0.00 2.41
3660 6641 5.415701 GCATTCAAGAAATCAGGAACCTACA 59.584 40.000 0.00 0.00 0.00 2.74
4583 7605 6.294787 GGCAGATTGCTAGTAGATTGCTAGTA 60.295 42.308 0.00 0.00 44.28 1.82
4584 7606 5.510520 GGCAGATTGCTAGTAGATTGCTAGT 60.511 44.000 0.00 0.00 44.28 2.57
4585 7607 4.928615 GGCAGATTGCTAGTAGATTGCTAG 59.071 45.833 0.00 0.00 44.28 3.42
4586 7608 4.344968 TGGCAGATTGCTAGTAGATTGCTA 59.655 41.667 0.00 0.00 44.28 3.49
4587 7609 3.135348 TGGCAGATTGCTAGTAGATTGCT 59.865 43.478 0.00 0.00 44.28 3.91
4588 7610 3.470709 TGGCAGATTGCTAGTAGATTGC 58.529 45.455 0.00 2.76 44.28 3.56
4589 7611 6.436261 CAATTGGCAGATTGCTAGTAGATTG 58.564 40.000 0.00 0.00 44.28 2.67
4590 7612 6.630444 CAATTGGCAGATTGCTAGTAGATT 57.370 37.500 0.00 0.00 44.28 2.40
4789 8346 9.847224 TTTGTAGTGGAATCTCTAAAAAGACTT 57.153 29.630 0.00 0.00 28.58 3.01
4790 8347 9.274206 GTTTGTAGTGGAATCTCTAAAAAGACT 57.726 33.333 3.22 0.00 30.99 3.24
4794 8351 9.199982 CGTAGTTTGTAGTGGAATCTCTAAAAA 57.800 33.333 0.00 0.00 0.00 1.94
4796 8353 7.889469 ACGTAGTTTGTAGTGGAATCTCTAAA 58.111 34.615 0.00 0.00 37.78 1.85
4797 8354 7.458409 ACGTAGTTTGTAGTGGAATCTCTAA 57.542 36.000 0.00 0.00 37.78 2.10
4799 8356 5.979288 ACGTAGTTTGTAGTGGAATCTCT 57.021 39.130 0.00 0.00 37.78 3.10
4800 8357 5.736358 CGTACGTAGTTTGTAGTGGAATCTC 59.264 44.000 7.22 0.00 37.78 2.75
4801 8358 5.392380 CCGTACGTAGTTTGTAGTGGAATCT 60.392 44.000 15.21 0.00 37.78 2.40
4802 8359 4.795278 CCGTACGTAGTTTGTAGTGGAATC 59.205 45.833 15.21 0.00 37.78 2.52
4803 8360 4.458989 TCCGTACGTAGTTTGTAGTGGAAT 59.541 41.667 15.21 0.00 37.78 3.01
4807 8364 4.726416 ACATCCGTACGTAGTTTGTAGTG 58.274 43.478 15.21 0.00 37.78 2.74
4809 8366 9.964253 CTATATACATCCGTACGTAGTTTGTAG 57.036 37.037 15.21 11.53 37.78 2.74
4811 8368 8.499162 GTCTATATACATCCGTACGTAGTTTGT 58.501 37.037 15.21 11.74 37.78 2.83
4849 9899 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4850 9900 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4851 9901 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4853 9903 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4854 9904 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4856 9906 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4857 9907 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4858 9908 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4859 9909 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
4860 9910 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
4861 9911 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
4862 9912 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
4863 9913 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
4867 9917 3.612004 GCACTATGGACTACATACGGAGC 60.612 52.174 0.00 0.00 41.03 4.70
4868 9918 3.568430 TGCACTATGGACTACATACGGAG 59.432 47.826 0.00 0.00 41.03 4.63
4869 9919 3.558033 TGCACTATGGACTACATACGGA 58.442 45.455 0.00 0.00 41.03 4.69
4870 9920 4.316205 TTGCACTATGGACTACATACGG 57.684 45.455 0.00 0.00 41.03 4.02
4873 9923 8.706322 TTAGAGATTGCACTATGGACTACATA 57.294 34.615 0.00 0.00 41.03 2.29
4874 9924 7.603180 TTAGAGATTGCACTATGGACTACAT 57.397 36.000 0.00 0.00 43.68 2.29
4899 10520 8.330993 TCCCTCCGTTCCTAAATATAAGTTTTT 58.669 33.333 0.00 0.00 0.00 1.94
4901 10522 7.126879 ACTCCCTCCGTTCCTAAATATAAGTTT 59.873 37.037 0.00 0.00 0.00 2.66
4902 10523 6.614496 ACTCCCTCCGTTCCTAAATATAAGTT 59.386 38.462 0.00 0.00 0.00 2.66
4903 10524 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4908 10529 8.618385 AGTATATACTCCCTCCGTTCCTAAATA 58.382 37.037 9.71 0.00 0.00 1.40
4909 10530 7.477008 AGTATATACTCCCTCCGTTCCTAAAT 58.523 38.462 9.71 0.00 0.00 1.40
4910 10531 6.856757 AGTATATACTCCCTCCGTTCCTAAA 58.143 40.000 9.71 0.00 0.00 1.85
4911 10532 6.460103 AGTATATACTCCCTCCGTTCCTAA 57.540 41.667 9.71 0.00 0.00 2.69
4913 10534 5.336491 AAGTATATACTCCCTCCGTTCCT 57.664 43.478 15.72 0.00 34.99 3.36
4915 10536 7.598118 GCTTTTAAGTATATACTCCCTCCGTTC 59.402 40.741 15.72 0.00 34.99 3.95
4916 10537 7.070322 TGCTTTTAAGTATATACTCCCTCCGTT 59.930 37.037 15.72 0.67 34.99 4.44
5056 11493 2.647529 TATCGTACTGGTGTGCTGTG 57.352 50.000 0.00 0.00 0.00 3.66
5094 11586 6.434652 ACTCTAACACTAACACTGTAGCTCAT 59.565 38.462 0.00 0.00 0.00 2.90
5096 11588 6.256912 ACTCTAACACTAACACTGTAGCTC 57.743 41.667 0.00 0.00 0.00 4.09
5101 11593 9.856488 CATTACATACTCTAACACTAACACTGT 57.144 33.333 0.00 0.00 0.00 3.55
5102 11594 9.302345 CCATTACATACTCTAACACTAACACTG 57.698 37.037 0.00 0.00 0.00 3.66
5103 11595 8.475639 CCCATTACATACTCTAACACTAACACT 58.524 37.037 0.00 0.00 0.00 3.55
5104 11596 7.224167 GCCCATTACATACTCTAACACTAACAC 59.776 40.741 0.00 0.00 0.00 3.32
5106 11598 6.704937 GGCCCATTACATACTCTAACACTAAC 59.295 42.308 0.00 0.00 0.00 2.34
5109 11601 4.969359 AGGCCCATTACATACTCTAACACT 59.031 41.667 0.00 0.00 0.00 3.55
5110 11602 5.291905 AGGCCCATTACATACTCTAACAC 57.708 43.478 0.00 0.00 0.00 3.32
5111 11603 7.450074 CATTAGGCCCATTACATACTCTAACA 58.550 38.462 0.00 0.00 0.00 2.41
5115 11607 5.505181 CCATTAGGCCCATTACATACTCT 57.495 43.478 0.00 0.00 0.00 3.24
5130 11622 4.894201 CCAGCTCAGGCCATTAGG 57.106 61.111 5.01 0.00 39.73 2.69
5138 11630 1.005630 GCTATACCGCCAGCTCAGG 60.006 63.158 0.00 0.00 34.86 3.86
5139 11631 4.663444 GCTATACCGCCAGCTCAG 57.337 61.111 0.00 0.00 34.86 3.35
5147 11639 3.729862 AAGACTAACAGGCTATACCGC 57.270 47.619 0.00 0.00 46.52 5.68
5149 11641 5.146298 ACCCTAAGACTAACAGGCTATACC 58.854 45.833 0.00 0.00 27.04 2.73
5150 11642 6.728089 AACCCTAAGACTAACAGGCTATAC 57.272 41.667 0.00 0.00 27.04 1.47
5151 11643 9.443365 AATTAACCCTAAGACTAACAGGCTATA 57.557 33.333 0.00 0.00 27.04 1.31
5152 11644 7.932683 ATTAACCCTAAGACTAACAGGCTAT 57.067 36.000 0.00 0.00 27.04 2.97
5155 11647 7.789026 TCTAATTAACCCTAAGACTAACAGGC 58.211 38.462 0.00 0.00 0.00 4.85
5156 11648 9.198475 TCTCTAATTAACCCTAAGACTAACAGG 57.802 37.037 0.00 0.00 0.00 4.00
5162 11654 9.382307 CCCTTATCTCTAATTAACCCTAAGACT 57.618 37.037 0.00 0.00 0.00 3.24
5163 11655 9.156940 ACCCTTATCTCTAATTAACCCTAAGAC 57.843 37.037 0.00 0.00 0.00 3.01
5164 11656 9.377238 GACCCTTATCTCTAATTAACCCTAAGA 57.623 37.037 0.00 0.00 0.00 2.10
5165 11657 8.305317 CGACCCTTATCTCTAATTAACCCTAAG 58.695 40.741 0.00 0.00 0.00 2.18
5166 11658 7.256083 GCGACCCTTATCTCTAATTAACCCTAA 60.256 40.741 0.00 0.00 0.00 2.69
5167 11659 6.210185 GCGACCCTTATCTCTAATTAACCCTA 59.790 42.308 0.00 0.00 0.00 3.53
5168 11660 5.011840 GCGACCCTTATCTCTAATTAACCCT 59.988 44.000 0.00 0.00 0.00 4.34
5169 11661 5.011840 AGCGACCCTTATCTCTAATTAACCC 59.988 44.000 0.00 0.00 0.00 4.11
5170 11662 6.099159 AGCGACCCTTATCTCTAATTAACC 57.901 41.667 0.00 0.00 0.00 2.85
5171 11663 6.985059 ACAAGCGACCCTTATCTCTAATTAAC 59.015 38.462 0.00 0.00 31.00 2.01
5172 11664 7.120923 ACAAGCGACCCTTATCTCTAATTAA 57.879 36.000 0.00 0.00 31.00 1.40
5173 11665 6.726490 ACAAGCGACCCTTATCTCTAATTA 57.274 37.500 0.00 0.00 31.00 1.40
5174 11666 5.615925 ACAAGCGACCCTTATCTCTAATT 57.384 39.130 0.00 0.00 31.00 1.40
5175 11667 5.615925 AACAAGCGACCCTTATCTCTAAT 57.384 39.130 0.00 0.00 31.00 1.73
5176 11668 5.416271 AAACAAGCGACCCTTATCTCTAA 57.584 39.130 0.00 0.00 31.00 2.10
5177 11669 5.068723 CCTAAACAAGCGACCCTTATCTCTA 59.931 44.000 0.00 0.00 31.00 2.43
5178 11670 3.983044 AAACAAGCGACCCTTATCTCT 57.017 42.857 0.00 0.00 31.00 3.10
5179 11671 4.120589 CCTAAACAAGCGACCCTTATCTC 58.879 47.826 0.00 0.00 31.00 2.75
5180 11672 3.118371 CCCTAAACAAGCGACCCTTATCT 60.118 47.826 0.00 0.00 31.00 1.98
5181 11673 3.203716 CCCTAAACAAGCGACCCTTATC 58.796 50.000 0.00 0.00 31.00 1.75
5182 11674 2.092592 CCCCTAAACAAGCGACCCTTAT 60.093 50.000 0.00 0.00 31.00 1.73
5183 11675 1.279846 CCCCTAAACAAGCGACCCTTA 59.720 52.381 0.00 0.00 31.00 2.69
5184 11676 0.037734 CCCCTAAACAAGCGACCCTT 59.962 55.000 0.00 0.00 0.00 3.95
5185 11677 1.131928 ACCCCTAAACAAGCGACCCT 61.132 55.000 0.00 0.00 0.00 4.34
5186 11678 0.675837 GACCCCTAAACAAGCGACCC 60.676 60.000 0.00 0.00 0.00 4.46
5187 11679 0.035739 TGACCCCTAAACAAGCGACC 59.964 55.000 0.00 0.00 0.00 4.79
5188 11680 1.804748 CTTGACCCCTAAACAAGCGAC 59.195 52.381 0.00 0.00 35.43 5.19
5189 11681 1.418637 ACTTGACCCCTAAACAAGCGA 59.581 47.619 0.00 0.00 42.93 4.93
5190 11682 1.892209 ACTTGACCCCTAAACAAGCG 58.108 50.000 0.00 0.00 42.93 4.68
5191 11683 3.190744 GCTTACTTGACCCCTAAACAAGC 59.809 47.826 0.00 0.00 42.93 4.01
5192 11684 3.756963 GGCTTACTTGACCCCTAAACAAG 59.243 47.826 0.00 0.00 44.16 3.16
5193 11685 3.396611 AGGCTTACTTGACCCCTAAACAA 59.603 43.478 0.00 0.00 0.00 2.83
5194 11686 2.983898 AGGCTTACTTGACCCCTAAACA 59.016 45.455 0.00 0.00 0.00 2.83
5195 11687 3.715638 AGGCTTACTTGACCCCTAAAC 57.284 47.619 0.00 0.00 0.00 2.01
5211 11703 0.251077 CTTGACTCCCAAGCAAGGCT 60.251 55.000 0.00 0.00 44.90 4.58
5220 11712 3.858135 AGAGAGGTTTACTTGACTCCCA 58.142 45.455 0.00 0.00 0.00 4.37
5248 11740 7.301420 TGGTTAGATTGATACATCTCCTCTCT 58.699 38.462 0.00 0.00 0.00 3.10
5250 11742 7.472663 GCTTGGTTAGATTGATACATCTCCTCT 60.473 40.741 0.00 0.00 0.00 3.69
5251 11743 6.648725 GCTTGGTTAGATTGATACATCTCCTC 59.351 42.308 0.00 0.00 0.00 3.71
5252 11744 6.100279 TGCTTGGTTAGATTGATACATCTCCT 59.900 38.462 0.00 0.00 0.00 3.69
5254 11746 7.712639 TCTTGCTTGGTTAGATTGATACATCTC 59.287 37.037 0.00 0.00 0.00 2.75
5255 11747 7.568349 TCTTGCTTGGTTAGATTGATACATCT 58.432 34.615 0.00 0.00 0.00 2.90
5256 11748 7.792374 TCTTGCTTGGTTAGATTGATACATC 57.208 36.000 0.00 0.00 0.00 3.06
5257 11749 8.757982 ATTCTTGCTTGGTTAGATTGATACAT 57.242 30.769 0.00 0.00 0.00 2.29
5258 11750 8.579850 AATTCTTGCTTGGTTAGATTGATACA 57.420 30.769 0.00 0.00 0.00 2.29
5262 11754 8.862325 TCTTAATTCTTGCTTGGTTAGATTGA 57.138 30.769 0.00 0.00 0.00 2.57
5263 11755 9.565213 CTTCTTAATTCTTGCTTGGTTAGATTG 57.435 33.333 0.00 0.00 0.00 2.67
5265 11757 8.109634 TCCTTCTTAATTCTTGCTTGGTTAGAT 58.890 33.333 0.00 0.00 0.00 1.98
5266 11758 7.458397 TCCTTCTTAATTCTTGCTTGGTTAGA 58.542 34.615 0.00 0.00 0.00 2.10
5267 11759 7.687941 TCCTTCTTAATTCTTGCTTGGTTAG 57.312 36.000 0.00 0.00 0.00 2.34
5268 11760 8.472007 TTTCCTTCTTAATTCTTGCTTGGTTA 57.528 30.769 0.00 0.00 0.00 2.85
5269 11761 6.976934 TTCCTTCTTAATTCTTGCTTGGTT 57.023 33.333 0.00 0.00 0.00 3.67
5270 11762 6.976934 TTTCCTTCTTAATTCTTGCTTGGT 57.023 33.333 0.00 0.00 0.00 3.67
5271 11763 7.038048 GGATTTCCTTCTTAATTCTTGCTTGG 58.962 38.462 0.00 0.00 0.00 3.61
5272 11764 7.038048 GGGATTTCCTTCTTAATTCTTGCTTG 58.962 38.462 0.00 0.00 35.95 4.01
5273 11765 6.956435 AGGGATTTCCTTCTTAATTCTTGCTT 59.044 34.615 0.00 0.00 45.47 3.91
5274 11766 6.497640 AGGGATTTCCTTCTTAATTCTTGCT 58.502 36.000 0.00 0.00 45.47 3.91
5275 11767 6.782082 AGGGATTTCCTTCTTAATTCTTGC 57.218 37.500 0.00 0.00 45.47 4.01
5290 11782 2.103373 GGGCAAGAGGAAAGGGATTTC 58.897 52.381 0.00 0.00 0.00 2.17
5291 11783 1.616994 CGGGCAAGAGGAAAGGGATTT 60.617 52.381 0.00 0.00 0.00 2.17
5292 11784 0.034089 CGGGCAAGAGGAAAGGGATT 60.034 55.000 0.00 0.00 0.00 3.01
5295 11787 2.044946 CCGGGCAAGAGGAAAGGG 60.045 66.667 0.00 0.00 0.00 3.95
5296 11788 2.751837 GCCGGGCAAGAGGAAAGG 60.752 66.667 15.62 0.00 0.00 3.11
5297 11789 2.751837 GGCCGGGCAAGAGGAAAG 60.752 66.667 25.33 0.00 0.00 2.62
5300 11792 4.113815 CATGGCCGGGCAAGAGGA 62.114 66.667 36.08 10.90 0.00 3.71
5308 11800 4.799824 CTTTTGCGCATGGCCGGG 62.800 66.667 12.75 0.00 42.61 5.73
5309 11801 4.799824 CCTTTTGCGCATGGCCGG 62.800 66.667 12.75 0.00 42.61 6.13
5310 11802 3.969642 GACCTTTTGCGCATGGCCG 62.970 63.158 12.75 0.03 42.61 6.13
5313 11805 2.573340 GGGACCTTTTGCGCATGG 59.427 61.111 12.75 16.76 0.00 3.66
5339 11831 4.214327 GAAGGAGGGCGCGAGAGG 62.214 72.222 12.10 0.00 0.00 3.69
5340 11832 1.791103 CTAGAAGGAGGGCGCGAGAG 61.791 65.000 12.10 0.00 0.00 3.20
5342 11834 2.725008 CTAGAAGGAGGGCGCGAG 59.275 66.667 12.10 0.00 0.00 5.03
5343 11835 3.528370 GCTAGAAGGAGGGCGCGA 61.528 66.667 12.10 0.00 0.00 5.87
5344 11836 3.781770 CTGCTAGAAGGAGGGCGCG 62.782 68.421 0.00 0.00 29.18 6.86
5345 11837 2.107953 CTGCTAGAAGGAGGGCGC 59.892 66.667 0.00 0.00 29.18 6.53
5346 11838 2.107953 GCTGCTAGAAGGAGGGCG 59.892 66.667 0.00 0.00 33.92 6.13
5350 11842 0.676184 TATGGCGCTGCTAGAAGGAG 59.324 55.000 7.64 0.00 36.68 3.69
5351 11843 1.119684 TTATGGCGCTGCTAGAAGGA 58.880 50.000 7.64 0.00 0.00 3.36
5353 11845 1.939974 TGTTATGGCGCTGCTAGAAG 58.060 50.000 7.64 0.00 0.00 2.85
5354 11846 2.394930 TTGTTATGGCGCTGCTAGAA 57.605 45.000 7.64 0.00 0.00 2.10
5355 11847 2.620251 ATTGTTATGGCGCTGCTAGA 57.380 45.000 7.64 0.00 0.00 2.43
5356 11848 3.365832 CAAATTGTTATGGCGCTGCTAG 58.634 45.455 7.64 0.00 0.00 3.42
5357 11849 2.098934 CCAAATTGTTATGGCGCTGCTA 59.901 45.455 7.64 0.00 0.00 3.49
5359 11851 1.280066 CCAAATTGTTATGGCGCTGC 58.720 50.000 7.64 0.00 0.00 5.25
5360 11852 2.652941 ACCAAATTGTTATGGCGCTG 57.347 45.000 7.64 0.00 40.51 5.18
5361 11853 2.099098 GCTACCAAATTGTTATGGCGCT 59.901 45.455 7.64 0.00 40.51 5.92
5362 11854 2.159310 TGCTACCAAATTGTTATGGCGC 60.159 45.455 0.00 0.00 40.51 6.53
5363 11855 3.694734 CTGCTACCAAATTGTTATGGCG 58.305 45.455 0.00 0.00 40.51 5.69
5364 11856 3.131046 AGCTGCTACCAAATTGTTATGGC 59.869 43.478 0.00 0.00 40.51 4.40
5366 11858 5.514279 GCTAGCTGCTACCAAATTGTTATG 58.486 41.667 7.70 0.00 38.95 1.90
5381 11873 1.328986 GATTGAACCGAAGCTAGCTGC 59.671 52.381 20.16 16.61 43.29 5.25
5382 11874 2.621338 TGATTGAACCGAAGCTAGCTG 58.379 47.619 20.16 8.64 0.00 4.24
5385 11877 4.437239 AGACATGATTGAACCGAAGCTAG 58.563 43.478 0.00 0.00 0.00 3.42
5386 11878 4.471904 AGACATGATTGAACCGAAGCTA 57.528 40.909 0.00 0.00 0.00 3.32
5387 11879 3.340814 AGACATGATTGAACCGAAGCT 57.659 42.857 0.00 0.00 0.00 3.74
5388 11880 3.436704 TGAAGACATGATTGAACCGAAGC 59.563 43.478 0.00 0.00 0.00 3.86
5389 11881 4.142816 GGTGAAGACATGATTGAACCGAAG 60.143 45.833 0.00 0.00 0.00 3.79
5390 11882 3.751175 GGTGAAGACATGATTGAACCGAA 59.249 43.478 0.00 0.00 0.00 4.30
5391 11883 3.334691 GGTGAAGACATGATTGAACCGA 58.665 45.455 0.00 0.00 0.00 4.69
5392 11884 2.094258 CGGTGAAGACATGATTGAACCG 59.906 50.000 15.60 15.60 42.74 4.44
5393 11885 2.159517 GCGGTGAAGACATGATTGAACC 60.160 50.000 0.00 0.51 0.00 3.62
5394 11886 2.159517 GGCGGTGAAGACATGATTGAAC 60.160 50.000 0.00 0.00 0.00 3.18
5395 11887 2.083774 GGCGGTGAAGACATGATTGAA 58.916 47.619 0.00 0.00 0.00 2.69
5396 11888 1.737838 GGCGGTGAAGACATGATTGA 58.262 50.000 0.00 0.00 0.00 2.57
5398 11890 1.369091 GCGGCGGTGAAGACATGATT 61.369 55.000 9.78 0.00 0.00 2.57
5401 11893 3.499737 GGCGGCGGTGAAGACATG 61.500 66.667 9.78 0.00 0.00 3.21
5414 11906 3.952628 GAAGAGACGGGTTGGGCGG 62.953 68.421 0.00 0.00 0.00 6.13
5415 11907 2.434359 GAAGAGACGGGTTGGGCG 60.434 66.667 0.00 0.00 0.00 6.13
5416 11908 2.046217 GGAAGAGACGGGTTGGGC 60.046 66.667 0.00 0.00 0.00 5.36
5418 11910 2.434359 GCGGAAGAGACGGGTTGG 60.434 66.667 0.00 0.00 0.00 3.77
5419 11911 1.738099 CAGCGGAAGAGACGGGTTG 60.738 63.158 0.00 0.00 0.00 3.77
5421 11913 4.070552 GCAGCGGAAGAGACGGGT 62.071 66.667 0.00 0.00 0.00 5.28
5422 11914 4.821589 GGCAGCGGAAGAGACGGG 62.822 72.222 0.00 0.00 0.00 5.28
5425 11917 4.821589 CCCGGCAGCGGAAGAGAC 62.822 72.222 2.65 0.00 0.00 3.36
5428 11920 3.849951 GATCCCGGCAGCGGAAGA 61.850 66.667 2.65 0.00 31.75 2.87
5465 11957 3.827898 CTCCGAGGTGAGGACGGC 61.828 72.222 0.00 0.00 45.25 5.68
5476 11968 2.711922 CCCGAACACCTCCTCCGAG 61.712 68.421 0.00 0.00 35.72 4.63
5478 11970 3.771160 CCCCGAACACCTCCTCCG 61.771 72.222 0.00 0.00 0.00 4.63
5479 11971 2.606826 ACCCCGAACACCTCCTCC 60.607 66.667 0.00 0.00 0.00 4.30
5480 11972 2.663196 CACCCCGAACACCTCCTC 59.337 66.667 0.00 0.00 0.00 3.71
5481 11973 3.637273 GCACCCCGAACACCTCCT 61.637 66.667 0.00 0.00 0.00 3.69
5482 11974 3.637273 AGCACCCCGAACACCTCC 61.637 66.667 0.00 0.00 0.00 4.30
5483 11975 2.358737 CAGCACCCCGAACACCTC 60.359 66.667 0.00 0.00 0.00 3.85
5493 11985 3.712907 TTAGGTCCCGCAGCACCC 61.713 66.667 0.00 0.00 32.45 4.61
5494 11986 2.436115 GTTAGGTCCCGCAGCACC 60.436 66.667 0.00 0.00 0.00 5.01
5495 11987 2.436115 GGTTAGGTCCCGCAGCAC 60.436 66.667 0.00 0.00 0.00 4.40
5496 11988 3.712907 GGGTTAGGTCCCGCAGCA 61.713 66.667 0.00 0.00 37.93 4.41
5513 12005 2.801631 GGATCTCCTGGACCGCCTG 61.802 68.421 0.00 0.00 34.31 4.85
5514 12006 2.444895 GGATCTCCTGGACCGCCT 60.445 66.667 0.00 0.00 34.31 5.52
5515 12007 2.764128 TGGATCTCCTGGACCGCC 60.764 66.667 0.00 0.00 36.82 6.13
5516 12008 2.501610 GTGGATCTCCTGGACCGC 59.498 66.667 0.00 0.00 36.82 5.68
5517 12009 1.381872 AGGTGGATCTCCTGGACCG 60.382 63.158 8.72 0.00 35.42 4.79
5518 12010 2.216148 CAGGTGGATCTCCTGGACC 58.784 63.158 21.43 0.00 46.03 4.46
5524 12016 1.680249 GCCAAGAACAGGTGGATCTCC 60.680 57.143 0.00 0.00 37.03 3.71
5526 12018 0.329596 GGCCAAGAACAGGTGGATCT 59.670 55.000 0.00 0.00 37.03 2.75
5528 12020 1.002134 CGGCCAAGAACAGGTGGAT 60.002 57.895 2.24 0.00 37.03 3.41
5529 12021 2.429930 CGGCCAAGAACAGGTGGA 59.570 61.111 2.24 0.00 37.03 4.02
5530 12022 2.672996 CCGGCCAAGAACAGGTGG 60.673 66.667 2.24 0.00 38.00 4.61
5531 12023 2.672996 CCCGGCCAAGAACAGGTG 60.673 66.667 2.24 0.00 0.00 4.00
5533 12025 2.359975 GACCCGGCCAAGAACAGG 60.360 66.667 2.24 0.00 0.00 4.00
5534 12026 1.550130 TAGGACCCGGCCAAGAACAG 61.550 60.000 2.24 0.00 0.00 3.16
5536 12028 1.078637 GTAGGACCCGGCCAAGAAC 60.079 63.158 2.24 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.