Multiple sequence alignment - TraesCS7D01G283600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G283600 chr7D 100.000 6026 0 0 1 6026 295037666 295043691 0.000000e+00 11129.0
1 TraesCS7D01G283600 chr7D 97.917 96 2 0 5645 5740 295043216 295043311 3.740000e-37 167.0
2 TraesCS7D01G283600 chr7D 97.917 96 2 0 5551 5646 295043310 295043405 3.740000e-37 167.0
3 TraesCS7D01G283600 chr7D 90.000 70 4 3 5282 5350 30266863 30266930 2.990000e-13 87.9
4 TraesCS7D01G283600 chr7D 100.000 32 0 0 4116 4147 60438281 60438250 6.520000e-05 60.2
5 TraesCS7D01G283600 chr7A 97.745 3592 68 8 1701 5284 336758573 336754987 0.000000e+00 6172.0
6 TraesCS7D01G283600 chr7A 90.576 1284 75 19 27 1267 336760641 336759361 0.000000e+00 1659.0
7 TraesCS7D01G283600 chr7A 99.297 427 3 0 1292 1718 336759370 336758944 0.000000e+00 773.0
8 TraesCS7D01G283600 chr7A 85.610 410 56 2 1 409 503531020 503531427 1.550000e-115 427.0
9 TraesCS7D01G283600 chr7A 88.166 338 15 1 5334 5646 336754997 336754660 4.410000e-101 379.0
10 TraesCS7D01G283600 chr7A 91.667 168 14 0 5645 5812 336754755 336754588 3.630000e-57 233.0
11 TraesCS7D01G283600 chr7A 98.039 51 1 0 5282 5332 428396743 428396793 8.320000e-14 89.8
12 TraesCS7D01G283600 chr7B 98.191 2101 31 4 1292 3387 357995875 357993777 0.000000e+00 3663.0
13 TraesCS7D01G283600 chr7B 97.260 1861 46 3 3429 5284 357993780 357991920 0.000000e+00 3149.0
14 TraesCS7D01G283600 chr7B 91.034 1305 75 19 1 1267 357997166 357995866 0.000000e+00 1724.0
15 TraesCS7D01G283600 chr7B 96.226 212 8 0 5334 5545 357991930 357991719 1.240000e-91 348.0
16 TraesCS7D01G283600 chr7B 95.833 168 7 0 5645 5812 357987448 357987281 7.700000e-69 272.0
17 TraesCS7D01G283600 chr7B 92.241 116 4 2 5858 5973 357967509 357967399 6.250000e-35 159.0
18 TraesCS7D01G283600 chr7B 94.286 105 5 1 5546 5649 357987453 357987349 6.250000e-35 159.0
19 TraesCS7D01G283600 chr7B 91.111 45 4 0 4107 4151 452963271 452963315 1.810000e-05 62.1
20 TraesCS7D01G283600 chr5D 85.122 410 59 2 2 409 264792596 264792187 9.340000e-113 418.0
21 TraesCS7D01G283600 chr5D 76.667 210 47 2 435 642 538172029 538172238 1.370000e-21 115.0
22 TraesCS7D01G283600 chr5D 91.045 67 6 0 1877 1943 375746474 375746540 2.310000e-14 91.6
23 TraesCS7D01G283600 chr5D 98.000 50 1 0 5282 5331 133865978 133866027 2.990000e-13 87.9
24 TraesCS7D01G283600 chr5D 98.000 50 1 0 5282 5331 538628701 538628750 2.990000e-13 87.9
25 TraesCS7D01G283600 chr3D 84.096 415 59 5 1 408 122449064 122449478 1.570000e-105 394.0
26 TraesCS7D01G283600 chr2D 84.352 409 57 4 1 407 389951133 389951536 1.570000e-105 394.0
27 TraesCS7D01G283600 chr1D 83.455 411 64 4 1 408 190496420 190496011 4.410000e-101 379.0
28 TraesCS7D01G283600 chr1D 100.000 31 0 0 4122 4152 404263500 404263470 2.350000e-04 58.4
29 TraesCS7D01G283600 chr1B 83.698 411 57 8 2 405 687537678 687538085 4.410000e-101 379.0
30 TraesCS7D01G283600 chr1B 82.178 101 10 5 5881 5973 306058653 306058553 5.010000e-11 80.5
31 TraesCS7D01G283600 chr1B 82.222 90 11 4 4063 4147 161989220 161989131 8.380000e-09 73.1
32 TraesCS7D01G283600 chr4D 83.455 411 58 7 1 408 355286560 355286963 2.050000e-99 374.0
33 TraesCS7D01G283600 chr4D 100.000 32 0 0 4116 4147 320593688 320593657 6.520000e-05 60.2
34 TraesCS7D01G283600 chr5A 83.415 410 58 6 2 407 340391038 340390635 7.380000e-99 372.0
35 TraesCS7D01G283600 chr5A 83.000 100 10 5 5881 5973 694500365 694500266 3.870000e-12 84.2
36 TraesCS7D01G283600 chr5A 80.460 87 14 3 5724 5808 264423343 264423258 5.040000e-06 63.9
37 TraesCS7D01G283600 chr4B 93.333 75 3 2 1871 1943 439203656 439203730 6.390000e-20 110.0
38 TraesCS7D01G283600 chr4B 93.023 43 2 1 4056 4098 360230543 360230584 1.810000e-05 62.1
39 TraesCS7D01G283600 chr4B 86.441 59 3 3 4060 4118 108417783 108417730 6.520000e-05 60.2
40 TraesCS7D01G283600 chr4A 95.588 68 3 0 1876 1943 681712910 681712977 6.390000e-20 110.0
41 TraesCS7D01G283600 chr4A 93.750 64 4 0 1880 1943 40451918 40451855 4.970000e-16 97.1
42 TraesCS7D01G283600 chr4A 78.151 119 15 8 4058 4165 707658018 707658136 1.400000e-06 65.8
43 TraesCS7D01G283600 chr4A 78.151 119 15 8 4058 4165 707686978 707687096 1.400000e-06 65.8
44 TraesCS7D01G283600 chr4A 93.023 43 2 1 4056 4098 298241850 298241891 1.810000e-05 62.1
45 TraesCS7D01G283600 chr4A 89.130 46 2 3 4119 4161 640215030 640214985 3.000000e-03 54.7
46 TraesCS7D01G283600 chr2A 96.875 64 2 0 1880 1943 611937184 611937121 2.300000e-19 108.0
47 TraesCS7D01G283600 chr2A 96.154 52 2 0 5282 5333 605402458 605402407 1.080000e-12 86.1
48 TraesCS7D01G283600 chr6D 91.304 69 4 2 1876 1943 346454298 346454231 6.430000e-15 93.5
49 TraesCS7D01G283600 chr6D 97.959 49 1 0 5282 5330 163354776 163354728 1.080000e-12 86.1
50 TraesCS7D01G283600 chr5B 91.176 68 4 2 1877 1943 448598905 448598971 2.310000e-14 91.6
51 TraesCS7D01G283600 chr6A 98.039 51 1 0 5282 5332 27077178 27077228 8.320000e-14 89.8
52 TraesCS7D01G283600 chr6B 96.078 51 2 0 5282 5332 162172785 162172835 3.870000e-12 84.2
53 TraesCS7D01G283600 chr2B 89.552 67 4 3 5282 5347 5757385 5757321 1.390000e-11 82.4
54 TraesCS7D01G283600 chr2B 77.660 94 20 1 4063 4155 546976467 546976374 8.440000e-04 56.5
55 TraesCS7D01G283600 chr3B 81.188 101 11 5 5881 5973 683597164 683597264 2.330000e-09 75.0
56 TraesCS7D01G283600 chr1A 82.222 90 11 4 4063 4147 107470918 107470829 8.380000e-09 73.1
57 TraesCS7D01G283600 chr3A 80.220 91 12 5 4064 4150 20020463 20020375 5.040000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G283600 chr7D 295037666 295043691 6025 False 3821.0 11129 98.611333 1 6026 3 chr7D.!!$F2 6025
1 TraesCS7D01G283600 chr7A 336754588 336760641 6053 True 1843.2 6172 93.490200 27 5812 5 chr7A.!!$R1 5785
2 TraesCS7D01G283600 chr7B 357991719 357997166 5447 True 2221.0 3663 95.677750 1 5545 4 chr7B.!!$R3 5544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 682 0.104487 GCCTAAACCTAGACGGAGGC 59.896 60.000 9.14 9.14 41.49 4.70 F
982 1049 0.179092 CTTCATCGGAACCGTACCCC 60.179 60.000 12.93 0.00 40.74 4.95 F
1055 1122 0.462047 CGCCCTTCGCTTCTTACCAT 60.462 55.000 0.00 0.00 34.21 3.55 F
1257 1324 3.126858 CGGGTATTTATTGATGCGATGGG 59.873 47.826 0.00 0.00 0.00 4.00 F
1258 1325 4.331968 GGGTATTTATTGATGCGATGGGA 58.668 43.478 0.00 0.00 0.00 4.37 F
1266 1333 4.533919 TTGATGCGATGGGAATGTTTTT 57.466 36.364 0.00 0.00 0.00 1.94 F
1749 2204 5.768164 AGGATTGGAACGTGTAGAATTGTTT 59.232 36.000 0.00 0.00 0.00 2.83 F
3728 4190 2.903784 TGACAAGGCGCCTATATATGGT 59.096 45.455 33.07 18.37 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2169 2625 2.498167 TGAGTTTCCTTTCTGCAGAGC 58.502 47.619 17.43 0.0 0.00 4.09 R
2752 3212 2.797156 CGCATTCCTGTTTCTATCCTCG 59.203 50.000 0.00 0.0 0.00 4.63 R
2989 3449 7.321153 TCAGTTCTCTAATGCTACAAAGGTAC 58.679 38.462 0.00 0.0 0.00 3.34 R
3144 3606 2.492025 ACTTCATAGGGGAAGCCATCA 58.508 47.619 3.01 0.0 46.48 3.07 R
3370 3832 0.678950 TCGAATGCACCTGAGACACA 59.321 50.000 0.00 0.0 0.00 3.72 R
3371 3833 2.015736 ATCGAATGCACCTGAGACAC 57.984 50.000 0.00 0.0 0.00 3.67 R
3766 4228 2.166254 CCCAGCAGCCGTGAAATAAATT 59.834 45.455 0.00 0.0 0.00 1.82 R
5847 6340 0.185901 TTCAAAACCAGGGAGCTGCT 59.814 50.000 0.00 0.0 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.546570 GATTGAACCTACAACAAAGCACC 58.453 43.478 0.00 0.00 32.50 5.01
74 75 6.012337 TGGCCAAACTAAATGGATAGATCA 57.988 37.500 0.61 0.00 40.56 2.92
171 173 7.959658 TCTGATCATAAACCCACAATTCATT 57.040 32.000 0.00 0.00 0.00 2.57
176 178 7.537596 TCATAAACCCACAATTCATTGAACT 57.462 32.000 6.53 0.00 40.14 3.01
241 243 9.045223 TCCGAAGAGAACATTGTATTGAATATG 57.955 33.333 0.00 0.00 0.00 1.78
242 244 9.045223 CCGAAGAGAACATTGTATTGAATATGA 57.955 33.333 0.00 0.00 0.00 2.15
256 258 8.950210 GTATTGAATATGAGAGAGAGAGAGAGG 58.050 40.741 0.00 0.00 0.00 3.69
266 292 4.307259 AGAGAGAGAGAGGGTCATCTAGT 58.693 47.826 0.00 0.00 0.00 2.57
285 311 4.214993 AGTTACTGCTATGGACCCCTAT 57.785 45.455 0.00 0.00 0.00 2.57
293 319 3.901844 GCTATGGACCCCTATGTCTTGTA 59.098 47.826 0.00 0.00 35.54 2.41
301 327 5.045797 GACCCCTATGTCTTGTAAGGAACTT 60.046 44.000 0.00 0.00 41.31 2.66
343 369 2.557924 CAGCAAGGTTGATGTAAAGGCA 59.442 45.455 0.00 0.00 39.57 4.75
354 380 3.998913 TGTAAAGGCACTCCATGATCA 57.001 42.857 0.00 0.00 38.49 2.92
478 505 4.851639 ACTCTTCCATGCTTAGGACAAT 57.148 40.909 0.00 0.00 34.19 2.71
509 537 5.344743 TTTAAGTGTTTTGCATTGGTCCA 57.655 34.783 0.00 0.00 0.00 4.02
510 538 3.902881 AAGTGTTTTGCATTGGTCCAA 57.097 38.095 6.80 6.80 0.00 3.53
531 559 0.454957 CGCTTGGCATTGGTTCTTCG 60.455 55.000 0.00 0.00 0.00 3.79
543 571 3.724374 TGGTTCTTCGTAAGGTCACAAG 58.276 45.455 0.00 0.00 38.47 3.16
555 583 3.295973 AGGTCACAAGCTCCTATCTCTC 58.704 50.000 0.00 0.00 0.00 3.20
630 658 2.479560 CGATACACCATGAAGCACTCGA 60.480 50.000 0.00 0.00 0.00 4.04
654 682 0.104487 GCCTAAACCTAGACGGAGGC 59.896 60.000 9.14 9.14 41.49 4.70
866 932 2.912956 TCTCCTCCACCAATAGCAAACT 59.087 45.455 0.00 0.00 0.00 2.66
961 1028 1.228154 GGTCTTCCACCAACGCCTT 60.228 57.895 0.00 0.00 45.98 4.35
982 1049 0.179092 CTTCATCGGAACCGTACCCC 60.179 60.000 12.93 0.00 40.74 4.95
1055 1122 0.462047 CGCCCTTCGCTTCTTACCAT 60.462 55.000 0.00 0.00 34.21 3.55
1257 1324 3.126858 CGGGTATTTATTGATGCGATGGG 59.873 47.826 0.00 0.00 0.00 4.00
1258 1325 4.331968 GGGTATTTATTGATGCGATGGGA 58.668 43.478 0.00 0.00 0.00 4.37
1259 1326 4.764823 GGGTATTTATTGATGCGATGGGAA 59.235 41.667 0.00 0.00 0.00 3.97
1260 1327 5.418840 GGGTATTTATTGATGCGATGGGAAT 59.581 40.000 0.00 0.00 0.00 3.01
1261 1328 6.324819 GGTATTTATTGATGCGATGGGAATG 58.675 40.000 0.00 0.00 0.00 2.67
1262 1329 6.071952 GGTATTTATTGATGCGATGGGAATGT 60.072 38.462 0.00 0.00 0.00 2.71
1263 1330 5.850557 TTTATTGATGCGATGGGAATGTT 57.149 34.783 0.00 0.00 0.00 2.71
1264 1331 5.850557 TTATTGATGCGATGGGAATGTTT 57.149 34.783 0.00 0.00 0.00 2.83
1265 1332 4.741321 ATTGATGCGATGGGAATGTTTT 57.259 36.364 0.00 0.00 0.00 2.43
1266 1333 4.533919 TTGATGCGATGGGAATGTTTTT 57.466 36.364 0.00 0.00 0.00 1.94
1429 1496 6.560253 ATGTTACTGTTTTCTGGATGACAC 57.440 37.500 0.00 0.00 0.00 3.67
1749 2204 5.768164 AGGATTGGAACGTGTAGAATTGTTT 59.232 36.000 0.00 0.00 0.00 2.83
2163 2619 9.460019 AGCTGCTCTTCTCTAATTTTTATTTCT 57.540 29.630 0.00 0.00 0.00 2.52
3144 3606 6.155221 TCTGCAGTGTAGAAGAAGATATGGTT 59.845 38.462 14.67 0.00 0.00 3.67
3370 3832 5.650283 TGGAAATCCAAAGAGGTAACCAAT 58.350 37.500 0.00 0.00 44.35 3.16
3371 3833 5.480073 TGGAAATCCAAAGAGGTAACCAATG 59.520 40.000 0.00 0.00 44.35 2.82
3728 4190 2.903784 TGACAAGGCGCCTATATATGGT 59.096 45.455 33.07 18.37 0.00 3.55
3938 4400 3.466395 AAGGCTCACCTAGACTCTTCT 57.534 47.619 0.00 0.00 45.80 2.85
4052 4514 6.575572 CACGAATTTGTTTAGCAATACGTGAA 59.424 34.615 20.27 0.00 46.84 3.18
4189 4651 3.059188 AGCACTTTTCAATGTTACCGACG 60.059 43.478 0.00 0.00 0.00 5.12
4457 4920 0.108774 GGCCCTGACCTATAGTTGCC 59.891 60.000 0.00 0.00 0.00 4.52
4518 4981 2.445565 AAGTAACGGGTTCGAGTTCC 57.554 50.000 0.00 0.00 40.11 3.62
4522 4985 1.824224 AACGGGTTCGAGTTCCCTCC 61.824 60.000 16.50 0.58 41.40 4.30
4525 4988 2.125633 GTTCGAGTTCCCTCCGGC 60.126 66.667 0.00 0.00 33.93 6.13
4680 5143 9.410556 CTTATTTGACCCTGTTTTTACATTCAG 57.589 33.333 0.00 0.00 0.00 3.02
4687 5150 8.017418 ACCCTGTTTTTACATTCAGATTCAAA 57.983 30.769 0.00 0.00 0.00 2.69
4755 5219 3.202906 TGGAAACACAGACCGAGAAAAG 58.797 45.455 0.00 0.00 33.40 2.27
5065 5530 4.276926 AGAGTTCTTTGACAGGCAATTGTC 59.723 41.667 0.50 0.50 46.02 3.18
5074 5539 3.332034 ACAGGCAATTGTCTTACGGTAC 58.668 45.455 10.56 0.00 0.00 3.34
5171 5636 4.479619 GCATTCTGTGGAATTCAACAGAC 58.520 43.478 35.32 24.09 39.87 3.51
5281 5749 7.351223 CAAGAAATTCAGAAGACAAGACTGAC 58.649 38.462 0.00 0.00 39.80 3.51
5284 5752 7.387397 AGAAATTCAGAAGACAAGACTGACATC 59.613 37.037 0.00 0.00 39.80 3.06
5285 5753 5.798125 TTCAGAAGACAAGACTGACATCT 57.202 39.130 0.00 0.00 39.80 2.90
5286 5754 5.384063 TCAGAAGACAAGACTGACATCTC 57.616 43.478 0.00 0.00 36.04 2.75
5287 5755 5.076182 TCAGAAGACAAGACTGACATCTCT 58.924 41.667 0.00 0.00 36.04 3.10
5288 5756 5.538053 TCAGAAGACAAGACTGACATCTCTT 59.462 40.000 0.00 0.00 36.04 2.85
5289 5757 5.863397 CAGAAGACAAGACTGACATCTCTTC 59.137 44.000 0.00 0.00 31.70 2.87
5290 5758 4.433186 AGACAAGACTGACATCTCTTCG 57.567 45.455 0.00 0.00 0.00 3.79
5291 5759 4.075682 AGACAAGACTGACATCTCTTCGA 58.924 43.478 0.00 0.00 0.00 3.71
5292 5760 4.704540 AGACAAGACTGACATCTCTTCGAT 59.295 41.667 0.00 0.00 0.00 3.59
5300 5768 1.500108 CATCTCTTCGATGCAGAGGC 58.500 55.000 11.70 0.00 42.75 4.70
5301 5769 0.392336 ATCTCTTCGATGCAGAGGCC 59.608 55.000 11.70 0.00 38.71 5.19
5302 5770 1.591059 CTCTTCGATGCAGAGGCCG 60.591 63.158 0.00 0.00 40.13 6.13
5303 5771 2.587194 CTTCGATGCAGAGGCCGG 60.587 66.667 0.00 0.00 40.13 6.13
5304 5772 4.161295 TTCGATGCAGAGGCCGGG 62.161 66.667 2.18 0.00 40.13 5.73
5311 5779 3.866582 CAGAGGCCGGGGGATGAC 61.867 72.222 2.18 0.00 0.00 3.06
5322 5790 2.899303 GGGGATGACCTCCTTTTCAA 57.101 50.000 0.00 0.00 44.28 2.69
5323 5791 3.169512 GGGGATGACCTCCTTTTCAAA 57.830 47.619 0.00 0.00 44.28 2.69
5324 5792 3.506398 GGGGATGACCTCCTTTTCAAAA 58.494 45.455 0.00 0.00 44.28 2.44
5325 5793 3.901222 GGGGATGACCTCCTTTTCAAAAA 59.099 43.478 0.00 0.00 44.28 1.94
5405 5873 3.577848 TGTATGGCCTCAACAGCATTTTT 59.422 39.130 3.32 0.00 0.00 1.94
5407 5875 1.344114 TGGCCTCAACAGCATTTTTCC 59.656 47.619 3.32 0.00 0.00 3.13
5473 5941 7.992608 TGTTTTGTCTATGCCATGATGTACTAT 59.007 33.333 0.00 0.00 0.00 2.12
5555 6048 1.001633 GGTTGAAGTCCTACGCTTGGA 59.998 52.381 0.00 0.00 0.00 3.53
5566 6059 0.456221 ACGCTTGGACCAGATAGTCG 59.544 55.000 0.00 1.13 37.66 4.18
5567 6060 0.872021 CGCTTGGACCAGATAGTCGC 60.872 60.000 0.00 0.00 37.66 5.19
5608 6101 7.597288 ACCTAGTCTTTTTGGCAGTATTTTT 57.403 32.000 0.00 0.00 0.00 1.94
5627 6120 4.345859 TTTTGAGTGATAGGACGTTGGT 57.654 40.909 0.00 0.00 0.00 3.67
5628 6121 3.313012 TTGAGTGATAGGACGTTGGTG 57.687 47.619 0.00 0.00 0.00 4.17
5629 6122 2.244695 TGAGTGATAGGACGTTGGTGT 58.755 47.619 0.00 0.00 0.00 4.16
5630 6123 2.230508 TGAGTGATAGGACGTTGGTGTC 59.769 50.000 0.00 0.00 38.17 3.67
5631 6124 2.230508 GAGTGATAGGACGTTGGTGTCA 59.769 50.000 0.00 0.00 40.72 3.58
5632 6125 2.631062 AGTGATAGGACGTTGGTGTCAA 59.369 45.455 0.00 0.00 40.72 3.18
5645 6138 4.955811 TGGTGTCAACTACAAGACATCT 57.044 40.909 7.27 0.00 45.46 2.90
5646 6139 5.290493 TGGTGTCAACTACAAGACATCTT 57.710 39.130 7.27 0.00 45.46 2.40
5659 6152 5.606348 AAGACATCTTGGACCAGATAGTC 57.394 43.478 17.08 17.08 34.66 2.59
5660 6153 3.634448 AGACATCTTGGACCAGATAGTCG 59.366 47.826 17.79 8.00 36.93 4.18
5661 6154 2.101582 ACATCTTGGACCAGATAGTCGC 59.898 50.000 0.00 0.00 37.66 5.19
5662 6155 1.847328 TCTTGGACCAGATAGTCGCA 58.153 50.000 0.00 0.00 37.66 5.10
5663 6156 2.388735 TCTTGGACCAGATAGTCGCAT 58.611 47.619 0.00 0.00 37.66 4.73
5664 6157 2.766263 TCTTGGACCAGATAGTCGCATT 59.234 45.455 0.00 0.00 37.66 3.56
5665 6158 3.197766 TCTTGGACCAGATAGTCGCATTT 59.802 43.478 0.00 0.00 37.66 2.32
5666 6159 3.627395 TGGACCAGATAGTCGCATTTT 57.373 42.857 0.00 0.00 37.66 1.82
5667 6160 3.950397 TGGACCAGATAGTCGCATTTTT 58.050 40.909 0.00 0.00 37.66 1.94
5694 6187 9.787435 TCTGAATTTAACCTAGTCTTTTTAGCA 57.213 29.630 0.00 0.00 0.00 3.49
5696 6189 9.569122 TGAATTTAACCTAGTCTTTTTAGCAGT 57.431 29.630 0.00 0.00 0.00 4.40
5743 6236 5.066117 GGTGTCAACTACGAGACATCTATGA 59.934 44.000 0.00 0.00 45.46 2.15
5744 6237 6.238786 GGTGTCAACTACGAGACATCTATGAT 60.239 42.308 0.00 0.00 45.46 2.45
5750 6243 7.197071 ACTACGAGACATCTATGATGACTTC 57.803 40.000 13.63 7.32 0.00 3.01
5753 6246 5.143660 CGAGACATCTATGATGACTTCGTC 58.856 45.833 13.63 1.13 0.00 4.20
5754 6247 5.277538 CGAGACATCTATGATGACTTCGTCA 60.278 44.000 13.63 3.63 46.90 4.35
5773 6266 4.594136 GTCATTCCTAAAATTTACCGGCG 58.406 43.478 0.00 0.00 0.00 6.46
5778 6271 4.432712 TCCTAAAATTTACCGGCGTAGTC 58.567 43.478 6.01 0.00 0.00 2.59
5799 6292 4.701171 GTCTCTCGGTGATACTTATAGGGG 59.299 50.000 0.00 0.00 0.00 4.79
5812 6305 0.910566 ATAGGGGTTGGGTGTGCGTA 60.911 55.000 0.00 0.00 0.00 4.42
5813 6306 1.546589 TAGGGGTTGGGTGTGCGTAG 61.547 60.000 0.00 0.00 0.00 3.51
5828 6321 2.184385 CGTAGCCATACTCGTTTCGT 57.816 50.000 0.00 0.00 0.00 3.85
5829 6322 3.323729 CGTAGCCATACTCGTTTCGTA 57.676 47.619 0.00 0.00 0.00 3.43
5830 6323 3.881795 CGTAGCCATACTCGTTTCGTAT 58.118 45.455 0.00 0.00 0.00 3.06
5831 6324 3.662645 CGTAGCCATACTCGTTTCGTATG 59.337 47.826 0.00 0.00 42.29 2.39
5832 6325 3.795623 AGCCATACTCGTTTCGTATGT 57.204 42.857 8.75 0.00 41.51 2.29
5833 6326 4.119442 AGCCATACTCGTTTCGTATGTT 57.881 40.909 8.75 0.00 41.51 2.71
5834 6327 3.863424 AGCCATACTCGTTTCGTATGTTG 59.137 43.478 8.75 0.00 41.51 3.33
5835 6328 3.000925 GCCATACTCGTTTCGTATGTTGG 59.999 47.826 8.75 0.00 41.51 3.77
5836 6329 3.000925 CCATACTCGTTTCGTATGTTGGC 59.999 47.826 8.75 0.00 41.51 4.52
5837 6330 1.435577 ACTCGTTTCGTATGTTGGCC 58.564 50.000 0.00 0.00 0.00 5.36
5838 6331 1.001633 ACTCGTTTCGTATGTTGGCCT 59.998 47.619 3.32 0.00 0.00 5.19
5839 6332 1.659098 CTCGTTTCGTATGTTGGCCTC 59.341 52.381 3.32 0.00 0.00 4.70
5840 6333 0.368907 CGTTTCGTATGTTGGCCTCG 59.631 55.000 3.32 0.00 0.00 4.63
5841 6334 0.725117 GTTTCGTATGTTGGCCTCGG 59.275 55.000 3.32 0.00 0.00 4.63
5842 6335 0.391927 TTTCGTATGTTGGCCTCGGG 60.392 55.000 3.32 0.00 0.00 5.14
5843 6336 1.259142 TTCGTATGTTGGCCTCGGGA 61.259 55.000 3.32 0.00 0.00 5.14
5844 6337 1.046472 TCGTATGTTGGCCTCGGGAT 61.046 55.000 3.32 0.00 0.00 3.85
5845 6338 0.600255 CGTATGTTGGCCTCGGGATC 60.600 60.000 3.32 0.00 0.00 3.36
5846 6339 0.600255 GTATGTTGGCCTCGGGATCG 60.600 60.000 3.32 0.00 37.82 3.69
5847 6340 0.757561 TATGTTGGCCTCGGGATCGA 60.758 55.000 3.32 0.00 43.86 3.59
5855 6348 3.219928 TCGGGATCGAGCAGCTCC 61.220 66.667 17.16 3.16 40.88 4.70
5858 6351 2.420890 GGATCGAGCAGCTCCCTG 59.579 66.667 17.16 3.07 42.13 4.45
5859 6352 2.420890 GATCGAGCAGCTCCCTGG 59.579 66.667 17.16 2.69 39.54 4.45
5865 6358 4.500265 GCAGCTCCCTGGTTTTGA 57.500 55.556 0.00 0.00 39.54 2.69
5866 6359 2.732289 GCAGCTCCCTGGTTTTGAA 58.268 52.632 0.00 0.00 39.54 2.69
5867 6360 0.315251 GCAGCTCCCTGGTTTTGAAC 59.685 55.000 0.00 0.00 39.54 3.18
5879 6372 3.558033 GGTTTTGAACCCAGGACTAACA 58.442 45.455 0.00 0.00 46.12 2.41
5880 6373 3.317149 GGTTTTGAACCCAGGACTAACAC 59.683 47.826 0.00 0.00 46.12 3.32
5881 6374 2.943036 TTGAACCCAGGACTAACACC 57.057 50.000 0.00 0.00 0.00 4.16
5882 6375 1.809133 TGAACCCAGGACTAACACCA 58.191 50.000 0.00 0.00 0.00 4.17
5883 6376 1.418637 TGAACCCAGGACTAACACCAC 59.581 52.381 0.00 0.00 0.00 4.16
5884 6377 0.769247 AACCCAGGACTAACACCACC 59.231 55.000 0.00 0.00 0.00 4.61
5885 6378 0.400815 ACCCAGGACTAACACCACCA 60.401 55.000 0.00 0.00 0.00 4.17
5886 6379 0.768622 CCCAGGACTAACACCACCAA 59.231 55.000 0.00 0.00 0.00 3.67
5887 6380 1.144093 CCCAGGACTAACACCACCAAA 59.856 52.381 0.00 0.00 0.00 3.28
5888 6381 2.227194 CCAGGACTAACACCACCAAAC 58.773 52.381 0.00 0.00 0.00 2.93
5889 6382 2.227194 CAGGACTAACACCACCAAACC 58.773 52.381 0.00 0.00 0.00 3.27
5890 6383 1.847737 AGGACTAACACCACCAAACCA 59.152 47.619 0.00 0.00 0.00 3.67
5891 6384 2.445525 AGGACTAACACCACCAAACCAT 59.554 45.455 0.00 0.00 0.00 3.55
5892 6385 3.653836 AGGACTAACACCACCAAACCATA 59.346 43.478 0.00 0.00 0.00 2.74
5893 6386 4.007659 GGACTAACACCACCAAACCATAG 58.992 47.826 0.00 0.00 0.00 2.23
5894 6387 4.263156 GGACTAACACCACCAAACCATAGA 60.263 45.833 0.00 0.00 0.00 1.98
5895 6388 4.906618 ACTAACACCACCAAACCATAGAG 58.093 43.478 0.00 0.00 0.00 2.43
5896 6389 3.876309 AACACCACCAAACCATAGAGT 57.124 42.857 0.00 0.00 0.00 3.24
5897 6390 3.418684 ACACCACCAAACCATAGAGTC 57.581 47.619 0.00 0.00 0.00 3.36
5898 6391 2.039879 ACACCACCAAACCATAGAGTCC 59.960 50.000 0.00 0.00 0.00 3.85
5899 6392 2.039746 CACCACCAAACCATAGAGTCCA 59.960 50.000 0.00 0.00 0.00 4.02
5900 6393 2.714250 ACCACCAAACCATAGAGTCCAA 59.286 45.455 0.00 0.00 0.00 3.53
5901 6394 3.081804 CCACCAAACCATAGAGTCCAAC 58.918 50.000 0.00 0.00 0.00 3.77
5902 6395 3.081804 CACCAAACCATAGAGTCCAACC 58.918 50.000 0.00 0.00 0.00 3.77
5903 6396 2.714250 ACCAAACCATAGAGTCCAACCA 59.286 45.455 0.00 0.00 0.00 3.67
5904 6397 3.139397 ACCAAACCATAGAGTCCAACCAA 59.861 43.478 0.00 0.00 0.00 3.67
5905 6398 3.506067 CCAAACCATAGAGTCCAACCAAC 59.494 47.826 0.00 0.00 0.00 3.77
5906 6399 4.398319 CAAACCATAGAGTCCAACCAACT 58.602 43.478 0.00 0.00 0.00 3.16
5907 6400 5.514136 CCAAACCATAGAGTCCAACCAACTA 60.514 44.000 0.00 0.00 0.00 2.24
5908 6401 5.422214 AACCATAGAGTCCAACCAACTAG 57.578 43.478 0.00 0.00 0.00 2.57
5909 6402 3.775316 ACCATAGAGTCCAACCAACTAGG 59.225 47.826 0.00 0.00 45.67 3.02
5910 6403 3.432326 CCATAGAGTCCAACCAACTAGGC 60.432 52.174 0.00 0.00 43.14 3.93
5911 6404 2.031495 AGAGTCCAACCAACTAGGCT 57.969 50.000 0.00 0.00 43.14 4.58
5912 6405 3.185880 AGAGTCCAACCAACTAGGCTA 57.814 47.619 0.00 0.00 43.14 3.93
5913 6406 3.100671 AGAGTCCAACCAACTAGGCTAG 58.899 50.000 19.83 19.83 43.14 3.42
5914 6407 1.555533 AGTCCAACCAACTAGGCTAGC 59.444 52.381 21.26 6.04 43.14 3.42
5915 6408 1.278127 GTCCAACCAACTAGGCTAGCA 59.722 52.381 21.26 0.00 43.14 3.49
5916 6409 1.278127 TCCAACCAACTAGGCTAGCAC 59.722 52.381 21.26 6.06 43.14 4.40
5917 6410 1.003118 CCAACCAACTAGGCTAGCACA 59.997 52.381 21.26 1.84 43.14 4.57
5918 6411 2.076863 CAACCAACTAGGCTAGCACAC 58.923 52.381 21.26 0.00 43.14 3.82
5919 6412 1.348064 ACCAACTAGGCTAGCACACA 58.652 50.000 21.26 0.00 43.14 3.72
5920 6413 1.697432 ACCAACTAGGCTAGCACACAA 59.303 47.619 21.26 0.00 43.14 3.33
5921 6414 2.305927 ACCAACTAGGCTAGCACACAAT 59.694 45.455 21.26 0.00 43.14 2.71
5922 6415 2.939103 CCAACTAGGCTAGCACACAATC 59.061 50.000 21.26 0.00 0.00 2.67
5923 6416 3.599343 CAACTAGGCTAGCACACAATCA 58.401 45.455 21.26 0.00 0.00 2.57
5924 6417 3.252974 ACTAGGCTAGCACACAATCAC 57.747 47.619 21.26 0.00 0.00 3.06
5925 6418 2.196749 CTAGGCTAGCACACAATCACG 58.803 52.381 18.24 0.00 0.00 4.35
5926 6419 0.321671 AGGCTAGCACACAATCACGT 59.678 50.000 18.24 0.00 0.00 4.49
5927 6420 0.721718 GGCTAGCACACAATCACGTC 59.278 55.000 18.24 0.00 0.00 4.34
5928 6421 1.428448 GCTAGCACACAATCACGTCA 58.572 50.000 10.63 0.00 0.00 4.35
5929 6422 1.126846 GCTAGCACACAATCACGTCAC 59.873 52.381 10.63 0.00 0.00 3.67
5930 6423 2.403259 CTAGCACACAATCACGTCACA 58.597 47.619 0.00 0.00 0.00 3.58
5931 6424 1.662517 AGCACACAATCACGTCACAA 58.337 45.000 0.00 0.00 0.00 3.33
5932 6425 1.599071 AGCACACAATCACGTCACAAG 59.401 47.619 0.00 0.00 0.00 3.16
5933 6426 1.334059 GCACACAATCACGTCACAAGG 60.334 52.381 0.00 0.00 0.00 3.61
5934 6427 2.209273 CACACAATCACGTCACAAGGA 58.791 47.619 0.00 0.00 0.00 3.36
5935 6428 2.221749 CACACAATCACGTCACAAGGAG 59.778 50.000 0.00 0.00 0.00 3.69
5936 6429 1.800586 CACAATCACGTCACAAGGAGG 59.199 52.381 0.00 0.00 37.42 4.30
5937 6430 1.270839 ACAATCACGTCACAAGGAGGG 60.271 52.381 0.00 0.00 35.71 4.30
5938 6431 1.056660 AATCACGTCACAAGGAGGGT 58.943 50.000 0.00 0.00 35.71 4.34
5939 6432 1.056660 ATCACGTCACAAGGAGGGTT 58.943 50.000 0.00 0.00 35.71 4.11
5940 6433 0.391597 TCACGTCACAAGGAGGGTTC 59.608 55.000 0.00 0.00 35.71 3.62
5941 6434 0.105964 CACGTCACAAGGAGGGTTCA 59.894 55.000 0.00 0.00 35.71 3.18
5942 6435 0.393077 ACGTCACAAGGAGGGTTCAG 59.607 55.000 0.00 0.00 35.71 3.02
5943 6436 0.951040 CGTCACAAGGAGGGTTCAGC 60.951 60.000 0.00 0.00 0.00 4.26
5944 6437 0.951040 GTCACAAGGAGGGTTCAGCG 60.951 60.000 0.00 0.00 0.00 5.18
5945 6438 1.672356 CACAAGGAGGGTTCAGCGG 60.672 63.158 0.00 0.00 0.00 5.52
5946 6439 2.747855 CAAGGAGGGTTCAGCGGC 60.748 66.667 0.00 0.00 0.00 6.53
5947 6440 2.930562 AAGGAGGGTTCAGCGGCT 60.931 61.111 0.00 0.00 0.00 5.52
5948 6441 1.612442 AAGGAGGGTTCAGCGGCTA 60.612 57.895 0.26 0.00 0.00 3.93
5949 6442 1.198759 AAGGAGGGTTCAGCGGCTAA 61.199 55.000 0.26 0.00 0.00 3.09
5950 6443 0.983378 AGGAGGGTTCAGCGGCTAAT 60.983 55.000 0.26 0.00 0.00 1.73
5951 6444 0.107165 GGAGGGTTCAGCGGCTAATT 60.107 55.000 0.26 0.00 0.00 1.40
5952 6445 1.140252 GGAGGGTTCAGCGGCTAATTA 59.860 52.381 0.26 0.00 0.00 1.40
5953 6446 2.420967 GGAGGGTTCAGCGGCTAATTAA 60.421 50.000 0.26 0.00 0.00 1.40
5954 6447 3.275999 GAGGGTTCAGCGGCTAATTAAA 58.724 45.455 0.26 0.00 0.00 1.52
5955 6448 3.883489 GAGGGTTCAGCGGCTAATTAAAT 59.117 43.478 0.26 0.00 0.00 1.40
5956 6449 5.043737 AGGGTTCAGCGGCTAATTAAATA 57.956 39.130 0.26 0.00 0.00 1.40
5957 6450 5.063880 AGGGTTCAGCGGCTAATTAAATAG 58.936 41.667 0.26 0.00 0.00 1.73
5958 6451 4.820173 GGGTTCAGCGGCTAATTAAATAGT 59.180 41.667 0.26 0.00 0.00 2.12
5959 6452 5.993441 GGGTTCAGCGGCTAATTAAATAGTA 59.007 40.000 0.26 0.00 0.00 1.82
5960 6453 6.073385 GGGTTCAGCGGCTAATTAAATAGTAC 60.073 42.308 0.26 0.00 0.00 2.73
5961 6454 6.073385 GGTTCAGCGGCTAATTAAATAGTACC 60.073 42.308 0.26 0.00 0.00 3.34
5962 6455 6.164417 TCAGCGGCTAATTAAATAGTACCA 57.836 37.500 0.26 0.00 0.00 3.25
5963 6456 5.987347 TCAGCGGCTAATTAAATAGTACCAC 59.013 40.000 0.26 0.00 0.00 4.16
5964 6457 5.178809 CAGCGGCTAATTAAATAGTACCACC 59.821 44.000 0.26 0.00 0.00 4.61
5965 6458 5.071384 AGCGGCTAATTAAATAGTACCACCT 59.929 40.000 0.00 0.00 0.00 4.00
5966 6459 5.407691 GCGGCTAATTAAATAGTACCACCTC 59.592 44.000 0.00 0.00 0.00 3.85
5967 6460 5.632347 CGGCTAATTAAATAGTACCACCTCG 59.368 44.000 0.00 0.00 0.00 4.63
5968 6461 6.515531 CGGCTAATTAAATAGTACCACCTCGA 60.516 42.308 0.00 0.00 0.00 4.04
5969 6462 7.212274 GGCTAATTAAATAGTACCACCTCGAA 58.788 38.462 0.00 0.00 0.00 3.71
5970 6463 7.876582 GGCTAATTAAATAGTACCACCTCGAAT 59.123 37.037 0.00 0.00 0.00 3.34
5971 6464 9.269453 GCTAATTAAATAGTACCACCTCGAATT 57.731 33.333 0.00 0.00 0.00 2.17
5978 6471 9.729281 AAATAGTACCACCTCGAATTTAAAGAA 57.271 29.630 0.00 0.00 0.00 2.52
5979 6472 8.943909 ATAGTACCACCTCGAATTTAAAGAAG 57.056 34.615 0.00 0.00 0.00 2.85
5980 6473 7.001099 AGTACCACCTCGAATTTAAAGAAGA 57.999 36.000 0.00 0.00 0.00 2.87
5981 6474 7.621796 AGTACCACCTCGAATTTAAAGAAGAT 58.378 34.615 0.00 0.00 0.00 2.40
5982 6475 8.755977 AGTACCACCTCGAATTTAAAGAAGATA 58.244 33.333 0.00 0.00 0.00 1.98
5983 6476 7.845066 ACCACCTCGAATTTAAAGAAGATAC 57.155 36.000 0.00 0.00 0.00 2.24
5984 6477 7.391620 ACCACCTCGAATTTAAAGAAGATACA 58.608 34.615 0.00 0.00 0.00 2.29
5985 6478 7.881232 ACCACCTCGAATTTAAAGAAGATACAA 59.119 33.333 0.00 0.00 0.00 2.41
5986 6479 8.726988 CCACCTCGAATTTAAAGAAGATACAAA 58.273 33.333 0.00 0.00 0.00 2.83
6021 6514 9.696917 AATAGTCCTTGATCAATTGTTTTTCAC 57.303 29.630 8.96 0.00 0.00 3.18
6022 6515 7.352079 AGTCCTTGATCAATTGTTTTTCACT 57.648 32.000 8.96 0.00 0.00 3.41
6023 6516 7.785033 AGTCCTTGATCAATTGTTTTTCACTT 58.215 30.769 8.96 0.00 0.00 3.16
6024 6517 8.912988 AGTCCTTGATCAATTGTTTTTCACTTA 58.087 29.630 8.96 0.00 0.00 2.24
6025 6518 9.185192 GTCCTTGATCAATTGTTTTTCACTTAG 57.815 33.333 8.96 0.00 0.00 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.477530 AGAGGTGCTTTGTTGTAGGTTC 58.522 45.455 0.00 0.00 0.00 3.62
11 12 3.409026 AGTAGGAGAGGTGCTTTGTTG 57.591 47.619 0.00 0.00 0.00 3.33
12 13 5.307196 TCTTTAGTAGGAGAGGTGCTTTGTT 59.693 40.000 0.00 0.00 0.00 2.83
171 173 1.262950 CGATGCGTTTGTTGGAGTTCA 59.737 47.619 0.00 0.00 0.00 3.18
176 178 0.382158 TTTGCGATGCGTTTGTTGGA 59.618 45.000 0.00 0.00 0.00 3.53
241 243 3.392616 AGATGACCCTCTCTCTCTCTCTC 59.607 52.174 0.00 0.00 0.00 3.20
242 244 3.397527 AGATGACCCTCTCTCTCTCTCT 58.602 50.000 0.00 0.00 0.00 3.10
243 245 3.864789 AGATGACCCTCTCTCTCTCTC 57.135 52.381 0.00 0.00 0.00 3.20
256 258 5.279056 GGTCCATAGCAGTAACTAGATGACC 60.279 48.000 0.00 0.00 34.05 4.02
266 292 3.901844 GACATAGGGGTCCATAGCAGTAA 59.098 47.826 0.00 0.00 0.00 2.24
285 311 4.034742 GCACGAAAAGTTCCTTACAAGACA 59.965 41.667 0.00 0.00 0.00 3.41
293 319 3.820467 TGATGATGCACGAAAAGTTCCTT 59.180 39.130 0.00 0.00 0.00 3.36
301 327 2.897436 CCTCTCTGATGATGCACGAAA 58.103 47.619 0.00 0.00 0.00 3.46
343 369 0.186873 GGGGGCATTGATCATGGAGT 59.813 55.000 0.00 0.00 32.81 3.85
376 403 2.368439 TCCCATCTGAATGCCTTTTCG 58.632 47.619 0.00 0.00 0.00 3.46
385 412 0.758734 TTCCGCGATCCCATCTGAAT 59.241 50.000 8.23 0.00 0.00 2.57
484 512 7.675062 TGGACCAATGCAAAACACTTAAATAT 58.325 30.769 0.00 0.00 0.00 1.28
509 537 1.181098 AGAACCAATGCCAAGCGCTT 61.181 50.000 18.98 18.98 38.78 4.68
510 538 1.181098 AAGAACCAATGCCAAGCGCT 61.181 50.000 2.64 2.64 38.78 5.92
531 559 4.647399 AGAGATAGGAGCTTGTGACCTTAC 59.353 45.833 0.00 0.00 35.52 2.34
543 571 8.417273 AGGTATTTAAGAAGAGAGATAGGAGC 57.583 38.462 0.00 0.00 0.00 4.70
555 583 6.757897 TGATGTGGCAAGGTATTTAAGAAG 57.242 37.500 0.00 0.00 0.00 2.85
596 624 2.483013 GGTGTATCGGTGCTAAGCATGA 60.483 50.000 0.00 0.00 41.91 3.07
630 658 1.558294 CCGTCTAGGTTTAGGCCCTTT 59.442 52.381 0.00 0.00 33.35 3.11
654 682 9.627395 GGTCTATGTATATAGTGCAAAGTACTG 57.373 37.037 0.00 0.00 37.97 2.74
798 859 7.455008 TGGATAAGACCACTAGAGAGAAACTTT 59.545 37.037 0.00 0.00 34.77 2.66
799 860 6.954684 TGGATAAGACCACTAGAGAGAAACTT 59.045 38.462 0.00 0.00 34.77 2.66
807 869 6.723298 AAGACATGGATAAGACCACTAGAG 57.277 41.667 0.00 0.00 43.03 2.43
944 1011 1.949257 CAAGGCGTTGGTGGAAGAC 59.051 57.895 11.31 0.00 0.00 3.01
961 1028 0.108520 GGTACGGTTCCGATGAAGCA 60.109 55.000 18.28 0.00 46.84 3.91
1278 1345 1.710816 AACATTCTCCCCCGCAAAAA 58.289 45.000 0.00 0.00 0.00 1.94
1279 1346 1.710816 AAACATTCTCCCCCGCAAAA 58.289 45.000 0.00 0.00 0.00 2.44
1280 1347 1.710816 AAAACATTCTCCCCCGCAAA 58.289 45.000 0.00 0.00 0.00 3.68
1281 1348 1.710816 AAAAACATTCTCCCCCGCAA 58.289 45.000 0.00 0.00 0.00 4.85
1282 1349 2.588464 TAAAAACATTCTCCCCCGCA 57.412 45.000 0.00 0.00 0.00 5.69
1283 1350 4.465632 AATTAAAAACATTCTCCCCCGC 57.534 40.909 0.00 0.00 0.00 6.13
1284 1351 6.978080 CACATAATTAAAAACATTCTCCCCCG 59.022 38.462 0.00 0.00 0.00 5.73
1285 1352 7.093068 ACCACATAATTAAAAACATTCTCCCCC 60.093 37.037 0.00 0.00 0.00 5.40
1286 1353 7.763985 CACCACATAATTAAAAACATTCTCCCC 59.236 37.037 0.00 0.00 0.00 4.81
1287 1354 8.527810 TCACCACATAATTAAAAACATTCTCCC 58.472 33.333 0.00 0.00 0.00 4.30
1288 1355 9.921637 TTCACCACATAATTAAAAACATTCTCC 57.078 29.630 0.00 0.00 0.00 3.71
2163 2619 3.213206 TCCTTTCTGCAGAGCTTGAAA 57.787 42.857 17.43 6.30 33.67 2.69
2169 2625 2.498167 TGAGTTTCCTTTCTGCAGAGC 58.502 47.619 17.43 0.00 0.00 4.09
2752 3212 2.797156 CGCATTCCTGTTTCTATCCTCG 59.203 50.000 0.00 0.00 0.00 4.63
2989 3449 7.321153 TCAGTTCTCTAATGCTACAAAGGTAC 58.679 38.462 0.00 0.00 0.00 3.34
3144 3606 2.492025 ACTTCATAGGGGAAGCCATCA 58.508 47.619 3.01 0.00 46.48 3.07
3370 3832 0.678950 TCGAATGCACCTGAGACACA 59.321 50.000 0.00 0.00 0.00 3.72
3371 3833 2.015736 ATCGAATGCACCTGAGACAC 57.984 50.000 0.00 0.00 0.00 3.67
3766 4228 2.166254 CCCAGCAGCCGTGAAATAAATT 59.834 45.455 0.00 0.00 0.00 1.82
4052 4514 7.092264 TGAGATGGAGGGAGTATCAATTTTCTT 60.092 37.037 0.00 0.00 36.25 2.52
4131 4593 1.920610 ATTATACTCCCTCCGTCCCG 58.079 55.000 0.00 0.00 0.00 5.14
4457 4920 2.036217 TGTACTAACTGTTGGGACACGG 59.964 50.000 16.84 0.00 39.29 4.94
4525 4988 0.657368 GAGCTTTTCACGGTTGTGCG 60.657 55.000 0.00 0.00 46.01 5.34
4751 5215 6.133356 TGTGTTAGAACCAGGGATTTCTTTT 58.867 36.000 0.00 0.00 33.96 2.27
4752 5216 5.701224 TGTGTTAGAACCAGGGATTTCTTT 58.299 37.500 0.00 0.00 33.96 2.52
4755 5219 4.459337 CCTTGTGTTAGAACCAGGGATTTC 59.541 45.833 0.00 0.00 32.19 2.17
4884 5349 0.717224 CAAACACCGAATACCGTCCG 59.283 55.000 0.00 0.00 36.31 4.79
4887 5352 2.773993 ATCCAAACACCGAATACCGT 57.226 45.000 0.00 0.00 36.31 4.83
5074 5539 1.665679 AGCGCATGACATCGGTTTTAG 59.334 47.619 11.47 0.00 32.06 1.85
5284 5752 1.591059 CGGCCTCTGCATCGAAGAG 60.591 63.158 0.00 5.75 43.63 2.85
5285 5753 2.496341 CGGCCTCTGCATCGAAGA 59.504 61.111 0.00 0.00 45.75 2.87
5286 5754 2.587194 CCGGCCTCTGCATCGAAG 60.587 66.667 0.00 0.00 40.13 3.79
5287 5755 4.161295 CCCGGCCTCTGCATCGAA 62.161 66.667 0.00 0.00 40.13 3.71
5294 5762 3.866582 GTCATCCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
5350 5818 5.758784 GCCGCATAGTTTATCTAGGAAACTT 59.241 40.000 21.35 11.47 43.03 2.66
5405 5873 5.335897 CCAAGAAAATTGCAGAAATCTCGGA 60.336 40.000 0.00 0.00 0.00 4.55
5407 5875 4.860907 CCCAAGAAAATTGCAGAAATCTCG 59.139 41.667 0.00 0.00 0.00 4.04
5473 5941 1.069973 CGATGCTCAGTTTGCGAAACA 60.070 47.619 12.28 0.00 43.79 2.83
5608 6101 2.631062 ACACCAACGTCCTATCACTCAA 59.369 45.455 0.00 0.00 0.00 3.02
5609 6102 2.230508 GACACCAACGTCCTATCACTCA 59.769 50.000 0.00 0.00 0.00 3.41
5610 6103 2.230508 TGACACCAACGTCCTATCACTC 59.769 50.000 0.00 0.00 34.88 3.51
5611 6104 2.244695 TGACACCAACGTCCTATCACT 58.755 47.619 0.00 0.00 34.88 3.41
5612 6105 2.735134 GTTGACACCAACGTCCTATCAC 59.265 50.000 0.00 0.00 42.60 3.06
5613 6106 3.034721 GTTGACACCAACGTCCTATCA 57.965 47.619 0.00 0.00 42.60 2.15
5620 6113 9.931500 AAGATGTCTTGTAGTTGACACCAACGT 62.931 40.741 0.00 0.00 44.45 3.99
5621 6114 7.667039 AAGATGTCTTGTAGTTGACACCAACG 61.667 42.308 0.00 0.00 44.45 4.10
5622 6115 5.527582 AAGATGTCTTGTAGTTGACACCAAC 59.472 40.000 0.00 0.00 44.52 3.77
5623 6116 5.290493 AGATGTCTTGTAGTTGACACCAA 57.710 39.130 0.00 0.00 44.52 3.67
5624 6117 4.955811 AGATGTCTTGTAGTTGACACCA 57.044 40.909 0.00 0.00 44.52 4.17
5625 6118 5.597813 CAAGATGTCTTGTAGTTGACACC 57.402 43.478 13.32 0.00 46.11 4.16
5637 6130 4.098654 CGACTATCTGGTCCAAGATGTCTT 59.901 45.833 11.83 0.00 37.48 3.01
5638 6131 3.634448 CGACTATCTGGTCCAAGATGTCT 59.366 47.826 11.83 0.00 37.48 3.41
5639 6132 3.797184 GCGACTATCTGGTCCAAGATGTC 60.797 52.174 11.83 13.63 37.48 3.06
5640 6133 2.101582 GCGACTATCTGGTCCAAGATGT 59.898 50.000 11.83 8.80 37.48 3.06
5641 6134 2.101415 TGCGACTATCTGGTCCAAGATG 59.899 50.000 11.83 6.63 37.48 2.90
5642 6135 2.388735 TGCGACTATCTGGTCCAAGAT 58.611 47.619 0.00 1.27 40.12 2.40
5643 6136 1.847328 TGCGACTATCTGGTCCAAGA 58.153 50.000 0.00 0.00 33.07 3.02
5644 6137 2.898729 ATGCGACTATCTGGTCCAAG 57.101 50.000 0.00 0.00 33.07 3.61
5645 6138 3.627395 AAATGCGACTATCTGGTCCAA 57.373 42.857 0.00 0.00 33.07 3.53
5646 6139 3.627395 AAAATGCGACTATCTGGTCCA 57.373 42.857 0.00 0.00 33.07 4.02
5668 6161 9.787435 TGCTAAAAAGACTAGGTTAAATTCAGA 57.213 29.630 0.00 0.00 0.00 3.27
5670 6163 9.569122 ACTGCTAAAAAGACTAGGTTAAATTCA 57.431 29.630 0.00 0.00 0.00 2.57
5699 6192 4.513692 CACCAACGTCCTATCACTCAAAAA 59.486 41.667 0.00 0.00 0.00 1.94
5700 6193 4.062293 CACCAACGTCCTATCACTCAAAA 58.938 43.478 0.00 0.00 0.00 2.44
5701 6194 3.070446 ACACCAACGTCCTATCACTCAAA 59.930 43.478 0.00 0.00 0.00 2.69
5719 6212 3.851976 AGATGTCTCGTAGTTGACACC 57.148 47.619 0.00 0.00 42.09 4.16
5750 6243 4.594136 GCCGGTAAATTTTAGGAATGACG 58.406 43.478 1.90 0.00 0.00 4.35
5753 6246 4.625972 ACGCCGGTAAATTTTAGGAATG 57.374 40.909 1.90 0.00 0.00 2.67
5754 6247 5.430886 ACTACGCCGGTAAATTTTAGGAAT 58.569 37.500 1.90 0.00 0.00 3.01
5778 6271 4.664392 ACCCCTATAAGTATCACCGAGAG 58.336 47.826 0.00 0.00 0.00 3.20
5799 6292 0.391927 TATGGCTACGCACACCCAAC 60.392 55.000 0.00 0.00 0.00 3.77
5816 6309 3.118884 AGGCCAACATACGAAACGAGTAT 60.119 43.478 5.01 0.00 35.38 2.12
5817 6310 2.231964 AGGCCAACATACGAAACGAGTA 59.768 45.455 5.01 0.00 0.00 2.59
5818 6311 1.001633 AGGCCAACATACGAAACGAGT 59.998 47.619 5.01 0.00 0.00 4.18
5819 6312 1.659098 GAGGCCAACATACGAAACGAG 59.341 52.381 5.01 0.00 0.00 4.18
5820 6313 1.717194 GAGGCCAACATACGAAACGA 58.283 50.000 5.01 0.00 0.00 3.85
5821 6314 0.368907 CGAGGCCAACATACGAAACG 59.631 55.000 5.01 0.00 0.00 3.60
5822 6315 0.725117 CCGAGGCCAACATACGAAAC 59.275 55.000 5.01 0.00 0.00 2.78
5823 6316 0.391927 CCCGAGGCCAACATACGAAA 60.392 55.000 5.01 0.00 0.00 3.46
5824 6317 1.219664 CCCGAGGCCAACATACGAA 59.780 57.895 5.01 0.00 0.00 3.85
5825 6318 1.046472 ATCCCGAGGCCAACATACGA 61.046 55.000 5.01 0.00 0.00 3.43
5826 6319 0.600255 GATCCCGAGGCCAACATACG 60.600 60.000 5.01 0.30 0.00 3.06
5827 6320 0.600255 CGATCCCGAGGCCAACATAC 60.600 60.000 5.01 0.00 38.22 2.39
5828 6321 0.757561 TCGATCCCGAGGCCAACATA 60.758 55.000 5.01 0.00 40.30 2.29
5829 6322 2.063979 TCGATCCCGAGGCCAACAT 61.064 57.895 5.01 0.00 40.30 2.71
5830 6323 2.682136 TCGATCCCGAGGCCAACA 60.682 61.111 5.01 0.00 40.30 3.33
5838 6331 3.219928 GGAGCTGCTCGATCCCGA 61.220 66.667 22.25 0.00 42.49 5.14
5842 6335 1.965754 AACCAGGGAGCTGCTCGATC 61.966 60.000 22.25 14.30 0.00 3.69
5843 6336 1.557269 AAACCAGGGAGCTGCTCGAT 61.557 55.000 22.25 11.12 0.00 3.59
5844 6337 1.768684 AAAACCAGGGAGCTGCTCGA 61.769 55.000 22.25 0.00 0.00 4.04
5845 6338 1.302832 AAAACCAGGGAGCTGCTCG 60.303 57.895 22.25 11.59 0.00 5.03
5846 6339 0.250901 TCAAAACCAGGGAGCTGCTC 60.251 55.000 21.17 21.17 0.00 4.26
5847 6340 0.185901 TTCAAAACCAGGGAGCTGCT 59.814 50.000 0.00 0.00 0.00 4.24
5848 6341 0.315251 GTTCAAAACCAGGGAGCTGC 59.685 55.000 0.00 0.00 0.00 5.25
5859 6352 3.317149 GGTGTTAGTCCTGGGTTCAAAAC 59.683 47.826 0.00 0.00 0.00 2.43
5860 6353 3.053544 TGGTGTTAGTCCTGGGTTCAAAA 60.054 43.478 0.00 0.00 0.00 2.44
5861 6354 2.510382 TGGTGTTAGTCCTGGGTTCAAA 59.490 45.455 0.00 0.00 0.00 2.69
5862 6355 2.128535 TGGTGTTAGTCCTGGGTTCAA 58.871 47.619 0.00 0.00 0.00 2.69
5863 6356 1.418637 GTGGTGTTAGTCCTGGGTTCA 59.581 52.381 0.00 0.00 0.00 3.18
5864 6357 1.271217 GGTGGTGTTAGTCCTGGGTTC 60.271 57.143 0.00 0.00 0.00 3.62
5865 6358 0.769247 GGTGGTGTTAGTCCTGGGTT 59.231 55.000 0.00 0.00 0.00 4.11
5866 6359 0.400815 TGGTGGTGTTAGTCCTGGGT 60.401 55.000 0.00 0.00 0.00 4.51
5867 6360 0.768622 TTGGTGGTGTTAGTCCTGGG 59.231 55.000 0.00 0.00 0.00 4.45
5868 6361 2.227194 GTTTGGTGGTGTTAGTCCTGG 58.773 52.381 0.00 0.00 0.00 4.45
5869 6362 2.227194 GGTTTGGTGGTGTTAGTCCTG 58.773 52.381 0.00 0.00 0.00 3.86
5870 6363 1.847737 TGGTTTGGTGGTGTTAGTCCT 59.152 47.619 0.00 0.00 0.00 3.85
5871 6364 2.351706 TGGTTTGGTGGTGTTAGTCC 57.648 50.000 0.00 0.00 0.00 3.85
5872 6365 4.901868 TCTATGGTTTGGTGGTGTTAGTC 58.098 43.478 0.00 0.00 0.00 2.59
5873 6366 4.349930 ACTCTATGGTTTGGTGGTGTTAGT 59.650 41.667 0.00 0.00 0.00 2.24
5874 6367 4.906618 ACTCTATGGTTTGGTGGTGTTAG 58.093 43.478 0.00 0.00 0.00 2.34
5875 6368 4.263156 GGACTCTATGGTTTGGTGGTGTTA 60.263 45.833 0.00 0.00 0.00 2.41
5876 6369 3.497942 GGACTCTATGGTTTGGTGGTGTT 60.498 47.826 0.00 0.00 0.00 3.32
5877 6370 2.039879 GGACTCTATGGTTTGGTGGTGT 59.960 50.000 0.00 0.00 0.00 4.16
5878 6371 2.039746 TGGACTCTATGGTTTGGTGGTG 59.960 50.000 0.00 0.00 0.00 4.17
5879 6372 2.344592 TGGACTCTATGGTTTGGTGGT 58.655 47.619 0.00 0.00 0.00 4.16
5880 6373 3.081804 GTTGGACTCTATGGTTTGGTGG 58.918 50.000 0.00 0.00 0.00 4.61
5881 6374 3.081804 GGTTGGACTCTATGGTTTGGTG 58.918 50.000 0.00 0.00 0.00 4.17
5882 6375 2.714250 TGGTTGGACTCTATGGTTTGGT 59.286 45.455 0.00 0.00 0.00 3.67
5883 6376 3.433306 TGGTTGGACTCTATGGTTTGG 57.567 47.619 0.00 0.00 0.00 3.28
5884 6377 4.398319 AGTTGGTTGGACTCTATGGTTTG 58.602 43.478 0.00 0.00 0.00 2.93
5885 6378 4.724279 AGTTGGTTGGACTCTATGGTTT 57.276 40.909 0.00 0.00 0.00 3.27
5886 6379 4.225267 CCTAGTTGGTTGGACTCTATGGTT 59.775 45.833 0.00 0.00 0.00 3.67
5887 6380 3.775316 CCTAGTTGGTTGGACTCTATGGT 59.225 47.826 0.00 0.00 0.00 3.55
5888 6381 3.432326 GCCTAGTTGGTTGGACTCTATGG 60.432 52.174 0.00 0.00 38.35 2.74
5889 6382 3.452627 AGCCTAGTTGGTTGGACTCTATG 59.547 47.826 0.00 0.00 38.35 2.23
5890 6383 3.725634 AGCCTAGTTGGTTGGACTCTAT 58.274 45.455 0.00 0.00 38.35 1.98
5891 6384 3.185880 AGCCTAGTTGGTTGGACTCTA 57.814 47.619 0.00 0.00 38.35 2.43
5892 6385 2.031495 AGCCTAGTTGGTTGGACTCT 57.969 50.000 0.00 0.00 38.35 3.24
5893 6386 2.418884 GCTAGCCTAGTTGGTTGGACTC 60.419 54.545 2.29 0.00 38.35 3.36
5894 6387 1.555533 GCTAGCCTAGTTGGTTGGACT 59.444 52.381 2.29 0.00 38.35 3.85
5895 6388 1.278127 TGCTAGCCTAGTTGGTTGGAC 59.722 52.381 13.29 0.00 38.35 4.02
5896 6389 1.278127 GTGCTAGCCTAGTTGGTTGGA 59.722 52.381 13.29 0.00 38.35 3.53
5897 6390 1.003118 TGTGCTAGCCTAGTTGGTTGG 59.997 52.381 13.29 0.00 38.35 3.77
5898 6391 2.076863 GTGTGCTAGCCTAGTTGGTTG 58.923 52.381 13.29 0.00 38.35 3.77
5899 6392 1.697432 TGTGTGCTAGCCTAGTTGGTT 59.303 47.619 13.29 0.00 38.35 3.67
5900 6393 1.348064 TGTGTGCTAGCCTAGTTGGT 58.652 50.000 13.29 0.00 38.35 3.67
5901 6394 2.472695 TTGTGTGCTAGCCTAGTTGG 57.527 50.000 13.29 0.00 39.35 3.77
5902 6395 3.372206 GTGATTGTGTGCTAGCCTAGTTG 59.628 47.826 13.29 0.00 0.00 3.16
5903 6396 3.600388 GTGATTGTGTGCTAGCCTAGTT 58.400 45.455 13.29 0.00 0.00 2.24
5904 6397 2.417379 CGTGATTGTGTGCTAGCCTAGT 60.417 50.000 13.29 0.00 0.00 2.57
5905 6398 2.196749 CGTGATTGTGTGCTAGCCTAG 58.803 52.381 13.29 0.00 0.00 3.02
5906 6399 1.548719 ACGTGATTGTGTGCTAGCCTA 59.451 47.619 13.29 0.00 0.00 3.93
5907 6400 0.321671 ACGTGATTGTGTGCTAGCCT 59.678 50.000 13.29 0.00 0.00 4.58
5908 6401 0.721718 GACGTGATTGTGTGCTAGCC 59.278 55.000 13.29 4.15 0.00 3.93
5909 6402 1.126846 GTGACGTGATTGTGTGCTAGC 59.873 52.381 8.10 8.10 0.00 3.42
5910 6403 2.403259 TGTGACGTGATTGTGTGCTAG 58.597 47.619 0.00 0.00 0.00 3.42
5911 6404 2.517650 TGTGACGTGATTGTGTGCTA 57.482 45.000 0.00 0.00 0.00 3.49
5912 6405 1.599071 CTTGTGACGTGATTGTGTGCT 59.401 47.619 0.00 0.00 0.00 4.40
5913 6406 1.334059 CCTTGTGACGTGATTGTGTGC 60.334 52.381 0.00 0.00 0.00 4.57
5914 6407 2.209273 TCCTTGTGACGTGATTGTGTG 58.791 47.619 0.00 0.00 0.00 3.82
5915 6408 2.483876 CTCCTTGTGACGTGATTGTGT 58.516 47.619 0.00 0.00 0.00 3.72
5916 6409 1.800586 CCTCCTTGTGACGTGATTGTG 59.199 52.381 0.00 0.00 0.00 3.33
5917 6410 1.270839 CCCTCCTTGTGACGTGATTGT 60.271 52.381 0.00 0.00 0.00 2.71
5918 6411 1.270839 ACCCTCCTTGTGACGTGATTG 60.271 52.381 0.00 0.00 0.00 2.67
5919 6412 1.056660 ACCCTCCTTGTGACGTGATT 58.943 50.000 0.00 0.00 0.00 2.57
5920 6413 1.002087 GAACCCTCCTTGTGACGTGAT 59.998 52.381 0.00 0.00 0.00 3.06
5921 6414 0.391597 GAACCCTCCTTGTGACGTGA 59.608 55.000 0.00 0.00 0.00 4.35
5922 6415 0.105964 TGAACCCTCCTTGTGACGTG 59.894 55.000 0.00 0.00 0.00 4.49
5923 6416 0.393077 CTGAACCCTCCTTGTGACGT 59.607 55.000 0.00 0.00 0.00 4.34
5924 6417 0.951040 GCTGAACCCTCCTTGTGACG 60.951 60.000 0.00 0.00 0.00 4.35
5925 6418 0.951040 CGCTGAACCCTCCTTGTGAC 60.951 60.000 0.00 0.00 0.00 3.67
5926 6419 1.371183 CGCTGAACCCTCCTTGTGA 59.629 57.895 0.00 0.00 0.00 3.58
5927 6420 1.672356 CCGCTGAACCCTCCTTGTG 60.672 63.158 0.00 0.00 0.00 3.33
5928 6421 2.750350 CCGCTGAACCCTCCTTGT 59.250 61.111 0.00 0.00 0.00 3.16
5929 6422 1.899437 TAGCCGCTGAACCCTCCTTG 61.899 60.000 2.16 0.00 0.00 3.61
5930 6423 1.198759 TTAGCCGCTGAACCCTCCTT 61.199 55.000 2.16 0.00 0.00 3.36
5931 6424 0.983378 ATTAGCCGCTGAACCCTCCT 60.983 55.000 2.16 0.00 0.00 3.69
5932 6425 0.107165 AATTAGCCGCTGAACCCTCC 60.107 55.000 2.16 0.00 0.00 4.30
5933 6426 2.614829 TAATTAGCCGCTGAACCCTC 57.385 50.000 2.16 0.00 0.00 4.30
5934 6427 3.359695 TTTAATTAGCCGCTGAACCCT 57.640 42.857 2.16 0.00 0.00 4.34
5935 6428 4.820173 ACTATTTAATTAGCCGCTGAACCC 59.180 41.667 2.16 0.00 0.00 4.11
5936 6429 6.073385 GGTACTATTTAATTAGCCGCTGAACC 60.073 42.308 2.16 0.00 0.00 3.62
5937 6430 6.480981 TGGTACTATTTAATTAGCCGCTGAAC 59.519 38.462 2.16 0.00 0.00 3.18
5938 6431 6.480981 GTGGTACTATTTAATTAGCCGCTGAA 59.519 38.462 2.16 0.00 0.00 3.02
5939 6432 5.987347 GTGGTACTATTTAATTAGCCGCTGA 59.013 40.000 2.16 0.00 0.00 4.26
5940 6433 5.178809 GGTGGTACTATTTAATTAGCCGCTG 59.821 44.000 2.16 0.00 0.00 5.18
5941 6434 5.071384 AGGTGGTACTATTTAATTAGCCGCT 59.929 40.000 0.00 0.00 0.00 5.52
5942 6435 5.303165 AGGTGGTACTATTTAATTAGCCGC 58.697 41.667 4.63 5.57 0.00 6.53
5943 6436 5.632347 CGAGGTGGTACTATTTAATTAGCCG 59.368 44.000 4.63 0.00 0.00 5.52
5944 6437 6.752168 TCGAGGTGGTACTATTTAATTAGCC 58.248 40.000 4.63 0.84 0.00 3.93
5945 6438 8.828688 ATTCGAGGTGGTACTATTTAATTAGC 57.171 34.615 4.63 0.00 0.00 3.09
5952 6445 9.729281 TTCTTTAAATTCGAGGTGGTACTATTT 57.271 29.630 0.00 0.00 0.00 1.40
5953 6446 9.379791 CTTCTTTAAATTCGAGGTGGTACTATT 57.620 33.333 0.00 0.00 0.00 1.73
5954 6447 8.755977 TCTTCTTTAAATTCGAGGTGGTACTAT 58.244 33.333 0.00 0.00 0.00 2.12
5955 6448 8.125978 TCTTCTTTAAATTCGAGGTGGTACTA 57.874 34.615 0.00 0.00 0.00 1.82
5956 6449 7.001099 TCTTCTTTAAATTCGAGGTGGTACT 57.999 36.000 0.00 0.00 0.00 2.73
5957 6450 7.845066 ATCTTCTTTAAATTCGAGGTGGTAC 57.155 36.000 0.00 0.00 0.00 3.34
5958 6451 8.533657 TGTATCTTCTTTAAATTCGAGGTGGTA 58.466 33.333 0.00 0.00 0.00 3.25
5959 6452 7.391620 TGTATCTTCTTTAAATTCGAGGTGGT 58.608 34.615 0.00 0.00 0.00 4.16
5960 6453 7.843490 TGTATCTTCTTTAAATTCGAGGTGG 57.157 36.000 0.00 0.00 0.00 4.61
5995 6488 9.696917 GTGAAAAACAATTGATCAAGGACTATT 57.303 29.630 13.59 5.29 0.00 1.73
5996 6489 9.082313 AGTGAAAAACAATTGATCAAGGACTAT 57.918 29.630 13.59 0.00 0.00 2.12
5997 6490 8.463930 AGTGAAAAACAATTGATCAAGGACTA 57.536 30.769 13.59 0.00 0.00 2.59
5998 6491 7.352079 AGTGAAAAACAATTGATCAAGGACT 57.648 32.000 13.59 4.51 0.00 3.85
5999 6492 9.185192 CTAAGTGAAAAACAATTGATCAAGGAC 57.815 33.333 13.59 2.45 37.38 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.