Multiple sequence alignment - TraesCS7D01G283500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G283500 chr7D 100.000 6053 0 0 1 6053 294044769 294050821 0.000000e+00 11178.0
1 TraesCS7D01G283500 chr7D 94.351 655 19 5 2 642 48826829 48826179 0.000000e+00 989.0
2 TraesCS7D01G283500 chr7D 84.722 288 32 11 359 639 591257118 591256836 1.660000e-70 278.0
3 TraesCS7D01G283500 chr7D 90.110 91 7 1 5963 6053 118350833 118350745 3.830000e-22 117.0
4 TraesCS7D01G283500 chr7A 97.548 2936 43 9 2259 5169 339753904 339750973 0.000000e+00 4996.0
5 TraesCS7D01G283500 chr7A 95.369 1274 35 3 2252 3503 339893754 339892483 0.000000e+00 2004.0
6 TraesCS7D01G283500 chr7A 94.945 1266 42 10 931 2192 339895676 339894429 0.000000e+00 1964.0
7 TraesCS7D01G283500 chr7A 95.364 1100 30 5 1098 2194 339755834 339754753 0.000000e+00 1729.0
8 TraesCS7D01G283500 chr7A 97.264 658 13 3 3637 4292 339892486 339891832 0.000000e+00 1110.0
9 TraesCS7D01G283500 chr7A 98.025 405 8 0 5432 5836 339750975 339750571 0.000000e+00 704.0
10 TraesCS7D01G283500 chr7A 94.688 433 12 4 729 1152 339756270 339755840 0.000000e+00 662.0
11 TraesCS7D01G283500 chr7A 92.857 168 12 0 5886 6053 339750571 339750404 1.690000e-60 244.0
12 TraesCS7D01G283500 chr7A 94.186 86 2 2 774 859 339895780 339895698 1.770000e-25 128.0
13 TraesCS7D01G283500 chr7A 93.939 66 4 0 638 703 339758811 339758746 3.860000e-17 100.0
14 TraesCS7D01G283500 chr7B 96.821 1667 25 5 2240 3878 358500169 358498503 0.000000e+00 2760.0
15 TraesCS7D01G283500 chr7B 98.020 1313 21 5 3860 5169 358498319 358497009 0.000000e+00 2276.0
16 TraesCS7D01G283500 chr7B 94.187 1273 36 18 638 1909 358502238 358501003 0.000000e+00 1906.0
17 TraesCS7D01G283500 chr7B 97.383 535 12 2 5432 5965 358497011 358496478 0.000000e+00 909.0
18 TraesCS7D01G283500 chr7B 99.248 266 2 0 1929 2194 358500860 358500595 1.180000e-131 481.0
19 TraesCS7D01G283500 chr7B 79.715 281 38 18 369 639 136390252 136389981 1.040000e-42 185.0
20 TraesCS7D01G283500 chr7B 100.000 29 0 0 234 262 742173019 742172991 3.000000e-03 54.7
21 TraesCS7D01G283500 chr1B 98.893 271 3 0 5166 5436 555256560 555256830 9.120000e-133 484.0
22 TraesCS7D01G283500 chr1B 79.825 570 81 23 81 633 340364134 340363582 9.520000e-103 385.0
23 TraesCS7D01G283500 chr1B 81.111 360 39 18 286 639 9278656 9278320 1.670000e-65 261.0
24 TraesCS7D01G283500 chr2B 98.496 266 4 0 5170 5435 509155272 509155007 2.550000e-128 470.0
25 TraesCS7D01G283500 chr2B 97.786 271 4 2 5162 5432 135770185 135770453 3.300000e-127 466.0
26 TraesCS7D01G283500 chr2B 98.127 267 5 0 5169 5435 509164806 509164540 3.300000e-127 466.0
27 TraesCS7D01G283500 chr2B 91.228 114 8 2 2891 3003 161412214 161412326 2.920000e-33 154.0
28 TraesCS7D01G283500 chr5A 97.101 276 8 0 5160 5435 481683963 481684238 3.300000e-127 466.0
29 TraesCS7D01G283500 chr5A 88.889 81 9 0 1594 1674 465768347 465768267 3.860000e-17 100.0
30 TraesCS7D01G283500 chr5A 100.000 31 0 0 5471 5501 501403360 501403390 2.360000e-04 58.4
31 TraesCS7D01G283500 chr5B 98.106 264 5 0 5169 5432 639367868 639368131 1.540000e-125 460.0
32 TraesCS7D01G283500 chr5B 78.830 581 84 28 82 639 543931336 543930772 7.460000e-94 355.0
33 TraesCS7D01G283500 chr5B 79.604 505 54 22 4 488 102954894 102954419 3.520000e-82 316.0
34 TraesCS7D01G283500 chr5B 100.000 34 0 0 5471 5504 328199384 328199351 5.060000e-06 63.9
35 TraesCS7D01G283500 chr4B 98.106 264 5 0 5169 5432 219306516 219306779 1.540000e-125 460.0
36 TraesCS7D01G283500 chr4B 97.398 269 7 0 5166 5434 115414091 115413823 5.530000e-125 459.0
37 TraesCS7D01G283500 chr4B 87.805 82 9 1 1594 1674 54507245 54507326 1.800000e-15 95.3
38 TraesCS7D01G283500 chr3D 98.106 264 5 0 5169 5432 598055206 598054943 1.540000e-125 460.0
39 TraesCS7D01G283500 chr5D 77.954 567 85 23 82 637 318870827 318870290 9.790000e-83 318.0
40 TraesCS7D01G283500 chr5D 91.150 113 9 1 2894 3006 371860607 371860718 1.050000e-32 152.0
41 TraesCS7D01G283500 chr5D 83.333 138 17 5 2897 3029 448453582 448453718 8.240000e-24 122.0
42 TraesCS7D01G283500 chr1D 77.956 499 69 25 87 574 478338289 478338757 2.150000e-69 274.0
43 TraesCS7D01G283500 chr4D 76.740 546 73 35 81 616 315814856 315814355 7.790000e-64 255.0
44 TraesCS7D01G283500 chr2A 90.678 118 8 3 2897 3012 205917600 205917716 2.920000e-33 154.0
45 TraesCS7D01G283500 chr2A 94.318 88 3 1 5966 6053 14824717 14824632 3.810000e-27 134.0
46 TraesCS7D01G283500 chr2A 91.011 89 6 1 5963 6051 656999300 656999386 1.070000e-22 119.0
47 TraesCS7D01G283500 chr2D 91.892 111 6 2 2897 3004 307026549 307026659 1.050000e-32 152.0
48 TraesCS7D01G283500 chr2D 88.636 88 8 2 5966 6053 223550658 223550743 8.300000e-19 106.0
49 TraesCS7D01G283500 chr2D 88.636 88 8 1 5966 6053 569306769 569306854 8.300000e-19 106.0
50 TraesCS7D01G283500 chr2D 87.654 81 10 0 1594 1674 637029981 637029901 1.800000e-15 95.3
51 TraesCS7D01G283500 chr1A 88.525 122 12 2 2891 3011 282548738 282548858 4.890000e-31 147.0
52 TraesCS7D01G283500 chr3B 87.302 126 14 2 2897 3022 178386658 178386535 6.320000e-30 143.0
53 TraesCS7D01G283500 chr6A 89.773 88 7 1 5966 6053 541276971 541277056 1.780000e-20 111.0
54 TraesCS7D01G283500 chr6D 88.889 90 8 1 5964 6053 1486633 1486546 6.410000e-20 110.0
55 TraesCS7D01G283500 chr6D 87.778 90 9 1 5964 6053 638065 638152 2.980000e-18 104.0
56 TraesCS7D01G283500 chr6D 86.585 82 11 0 1593 1674 450272328 450272247 2.320000e-14 91.6
57 TraesCS7D01G283500 chr4A 88.312 77 8 1 1594 1670 704507853 704507928 2.320000e-14 91.6
58 TraesCS7D01G283500 chr6B 84.615 91 13 1 1591 1681 674974176 674974265 8.360000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G283500 chr7D 294044769 294050821 6052 False 11178.000000 11178 100.0000 1 6053 1 chr7D.!!$F1 6052
1 TraesCS7D01G283500 chr7D 48826179 48826829 650 True 989.000000 989 94.3510 2 642 1 chr7D.!!$R1 640
2 TraesCS7D01G283500 chr7A 339750404 339758811 8407 True 1405.833333 4996 95.4035 638 6053 6 chr7A.!!$R1 5415
3 TraesCS7D01G283500 chr7A 339891832 339895780 3948 True 1301.500000 2004 95.4410 774 4292 4 chr7A.!!$R2 3518
4 TraesCS7D01G283500 chr7B 358496478 358502238 5760 True 1666.400000 2760 97.1318 638 5965 5 chr7B.!!$R3 5327
5 TraesCS7D01G283500 chr1B 340363582 340364134 552 True 385.000000 385 79.8250 81 633 1 chr1B.!!$R2 552
6 TraesCS7D01G283500 chr5B 543930772 543931336 564 True 355.000000 355 78.8300 82 639 1 chr5B.!!$R3 557
7 TraesCS7D01G283500 chr5D 318870290 318870827 537 True 318.000000 318 77.9540 82 637 1 chr5D.!!$R1 555
8 TraesCS7D01G283500 chr4D 315814355 315814856 501 True 255.000000 255 76.7400 81 616 1 chr4D.!!$R1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 771 0.382636 GTCAAAACGAACGCAGACCG 60.383 55.0 0.0 0.0 44.21 4.79 F
1099 3669 0.338120 CCTCCTCTCCACCTCTTCCT 59.662 60.0 0.0 0.0 0.00 3.36 F
2198 4895 0.461339 TCTAAAACATCTCCGCCCGC 60.461 55.0 0.0 0.0 0.00 6.13 F
3205 6715 0.454957 CGAAAATGCCTGCCTGAACG 60.455 55.0 0.0 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2238 4935 2.102588 AGCGATTGGACATGTACTACCC 59.897 50.000 10.05 1.24 0.00 3.69 R
2243 4940 2.356135 ACCAAGCGATTGGACATGTAC 58.644 47.619 37.21 0.00 44.82 2.90 R
3333 6843 1.265236 CTGAGTTCCAGGCACTCTCT 58.735 55.000 18.84 0.00 41.25 3.10 R
5193 8931 2.034812 GGAGTGCGCTATGTTACTAGCT 59.965 50.000 9.73 0.00 41.61 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 8.314635 TCAATTTGTGAACGTATTTTGAAAACG 58.685 29.630 1.05 1.05 42.17 3.60
49 50 9.666626 TTTGTGAACGTATTTTGAAAACGATAT 57.333 25.926 8.89 0.00 39.80 1.63
50 51 8.868744 TGTGAACGTATTTTGAAAACGATATC 57.131 30.769 8.89 5.27 39.80 1.63
207 213 7.529880 AGTGAACAAATTTTGAAAGCAAGAG 57.470 32.000 15.81 0.00 35.04 2.85
593 632 2.029073 CGTTCGCCCAGTCTGTGT 59.971 61.111 0.00 0.00 0.00 3.72
617 656 0.512952 GCTCGACAGTTTGACGCAAT 59.487 50.000 0.00 0.00 35.65 3.56
660 699 7.605410 TCCTTTTATTTTCGCGAATCTAAGT 57.395 32.000 24.05 6.95 0.00 2.24
663 702 8.122952 CCTTTTATTTTCGCGAATCTAAGTCAT 58.877 33.333 24.05 7.32 0.00 3.06
732 771 0.382636 GTCAAAACGAACGCAGACCG 60.383 55.000 0.00 0.00 44.21 4.79
802 3301 1.192534 GAAAACGCTTGAGGTGAGACG 59.807 52.381 0.00 0.00 0.00 4.18
1097 3667 1.671901 CGCCTCCTCTCCACCTCTTC 61.672 65.000 0.00 0.00 0.00 2.87
1098 3668 1.334384 GCCTCCTCTCCACCTCTTCC 61.334 65.000 0.00 0.00 0.00 3.46
1099 3669 0.338120 CCTCCTCTCCACCTCTTCCT 59.662 60.000 0.00 0.00 0.00 3.36
1419 3989 2.271497 GACGAGGACGAGGAGGGA 59.729 66.667 0.00 0.00 42.66 4.20
1621 4191 0.850883 TCCTGAGATTTTGGGGGCCT 60.851 55.000 0.84 0.00 0.00 5.19
1624 4194 1.145900 TGAGATTTTGGGGGCCTGGA 61.146 55.000 0.84 0.00 0.00 3.86
1796 4370 7.891183 AGAAGTGTTGTGTATCTATGACAAC 57.109 36.000 0.00 0.00 46.34 3.32
2110 4807 9.512435 CTTATCTAGTTGCATGAATGGAAAAAG 57.488 33.333 0.00 0.96 39.82 2.27
2194 4891 3.198068 TCAGCATCTAAAACATCTCCGC 58.802 45.455 0.00 0.00 0.00 5.54
2195 4892 2.289002 CAGCATCTAAAACATCTCCGCC 59.711 50.000 0.00 0.00 0.00 6.13
2196 4893 1.604278 GCATCTAAAACATCTCCGCCC 59.396 52.381 0.00 0.00 0.00 6.13
2197 4894 1.867233 CATCTAAAACATCTCCGCCCG 59.133 52.381 0.00 0.00 0.00 6.13
2198 4895 0.461339 TCTAAAACATCTCCGCCCGC 60.461 55.000 0.00 0.00 0.00 6.13
2199 4896 1.436983 CTAAAACATCTCCGCCCGCC 61.437 60.000 0.00 0.00 0.00 6.13
2200 4897 2.879813 TAAAACATCTCCGCCCGCCC 62.880 60.000 0.00 0.00 0.00 6.13
2303 5807 7.615582 AATTTCGAAACTCATGCATAGAAGA 57.384 32.000 13.81 0.00 0.00 2.87
2319 5823 7.148356 TGCATAGAAGAAAACTGATAGCTTGTG 60.148 37.037 0.00 0.00 0.00 3.33
2554 6058 6.150641 CAGTGCTGCTAATATGATGCCTTATT 59.849 38.462 0.00 0.00 0.00 1.40
2644 6148 8.325787 TGCCTTAAGTTTCCTTGTTCATATCTA 58.674 33.333 0.97 0.00 31.89 1.98
2839 6343 5.244755 GCTTCTTCAGGATCTTCTCTTTGT 58.755 41.667 0.00 0.00 0.00 2.83
2968 6476 8.026026 AGCACTGAAATACATCTAGATACATCG 58.974 37.037 4.54 0.00 0.00 3.84
2994 6502 3.120304 TGAGCGACGAGTAATATGGATCG 60.120 47.826 0.00 3.05 40.86 3.69
3078 6586 5.095490 GTGCAAGTACATATTTTGGCTCAC 58.905 41.667 0.00 0.00 0.00 3.51
3198 6708 2.507769 GCTGCCGAAAATGCCTGC 60.508 61.111 0.00 0.00 0.00 4.85
3205 6715 0.454957 CGAAAATGCCTGCCTGAACG 60.455 55.000 0.00 0.00 0.00 3.95
3333 6843 0.244450 GGGATGTCACCGTTCGTGTA 59.756 55.000 0.00 0.00 43.51 2.90
3347 6857 0.888619 CGTGTAGAGAGTGCCTGGAA 59.111 55.000 0.00 0.00 0.00 3.53
3784 7316 2.900546 AGGAGTGAAGGACCTTGTACAG 59.099 50.000 12.68 0.00 0.00 2.74
3816 7348 4.760204 GGACCAGGTATTGATTTATTCCCG 59.240 45.833 0.00 0.00 0.00 5.14
4850 8588 5.419542 GTGTCTCCAGTTAGATGTATTGCA 58.580 41.667 0.00 0.00 0.00 4.08
5093 8831 7.672983 TGAGTAAGTCTCCACATTTCATTTC 57.327 36.000 0.00 0.00 42.12 2.17
5169 8907 5.215160 AGATTCAAAAAGTGCGCAGTTAAG 58.785 37.500 29.50 20.91 0.00 1.85
5170 8908 3.347958 TCAAAAAGTGCGCAGTTAAGG 57.652 42.857 29.50 20.33 0.00 2.69
5171 8909 1.786579 CAAAAAGTGCGCAGTTAAGGC 59.213 47.619 29.50 7.39 0.00 4.35
5172 8910 1.318576 AAAAGTGCGCAGTTAAGGCT 58.681 45.000 29.50 11.96 0.00 4.58
5173 8911 2.178912 AAAGTGCGCAGTTAAGGCTA 57.821 45.000 29.50 0.00 0.00 3.93
5174 8912 1.726853 AAGTGCGCAGTTAAGGCTAG 58.273 50.000 28.37 0.00 0.00 3.42
5175 8913 0.608640 AGTGCGCAGTTAAGGCTAGT 59.391 50.000 12.22 0.00 0.00 2.57
5176 8914 1.000145 GTGCGCAGTTAAGGCTAGTC 59.000 55.000 12.22 0.00 0.00 2.59
5177 8915 0.606096 TGCGCAGTTAAGGCTAGTCA 59.394 50.000 5.66 0.00 0.00 3.41
5178 8916 1.207089 TGCGCAGTTAAGGCTAGTCAT 59.793 47.619 5.66 0.00 0.00 3.06
5179 8917 2.429250 TGCGCAGTTAAGGCTAGTCATA 59.571 45.455 5.66 0.00 0.00 2.15
5180 8918 3.053455 GCGCAGTTAAGGCTAGTCATAG 58.947 50.000 0.30 0.00 0.00 2.23
5181 8919 3.491104 GCGCAGTTAAGGCTAGTCATAGT 60.491 47.826 0.30 0.00 0.00 2.12
5182 8920 4.045104 CGCAGTTAAGGCTAGTCATAGTG 58.955 47.826 0.00 0.00 0.00 2.74
5183 8921 4.372656 GCAGTTAAGGCTAGTCATAGTGG 58.627 47.826 0.00 0.00 0.00 4.00
5184 8922 4.740934 GCAGTTAAGGCTAGTCATAGTGGG 60.741 50.000 0.00 0.00 0.00 4.61
5185 8923 4.649674 CAGTTAAGGCTAGTCATAGTGGGA 59.350 45.833 0.00 0.00 0.00 4.37
5186 8924 4.896482 AGTTAAGGCTAGTCATAGTGGGAG 59.104 45.833 0.00 0.00 0.00 4.30
5187 8925 3.406512 AAGGCTAGTCATAGTGGGAGT 57.593 47.619 0.00 0.00 0.00 3.85
5188 8926 4.537945 AAGGCTAGTCATAGTGGGAGTA 57.462 45.455 0.00 0.00 0.00 2.59
5189 8927 4.537945 AGGCTAGTCATAGTGGGAGTAA 57.462 45.455 0.00 0.00 0.00 2.24
5190 8928 4.216708 AGGCTAGTCATAGTGGGAGTAAC 58.783 47.826 0.00 0.00 0.00 2.50
5191 8929 4.079096 AGGCTAGTCATAGTGGGAGTAACT 60.079 45.833 0.00 0.00 0.00 2.24
5192 8930 4.650131 GGCTAGTCATAGTGGGAGTAACTT 59.350 45.833 0.00 0.00 0.00 2.66
5193 8931 5.832060 GGCTAGTCATAGTGGGAGTAACTTA 59.168 44.000 0.00 0.00 0.00 2.24
5194 8932 6.016108 GGCTAGTCATAGTGGGAGTAACTTAG 60.016 46.154 0.00 0.00 0.00 2.18
5195 8933 5.855740 AGTCATAGTGGGAGTAACTTAGC 57.144 43.478 0.00 0.00 0.00 3.09
5196 8934 5.520751 AGTCATAGTGGGAGTAACTTAGCT 58.479 41.667 0.00 0.00 0.00 3.32
5197 8935 6.670617 AGTCATAGTGGGAGTAACTTAGCTA 58.329 40.000 0.00 0.00 0.00 3.32
5198 8936 6.773685 AGTCATAGTGGGAGTAACTTAGCTAG 59.226 42.308 0.00 0.00 0.00 3.42
5199 8937 6.546772 GTCATAGTGGGAGTAACTTAGCTAGT 59.453 42.308 0.00 0.00 39.32 2.57
5200 8938 7.718753 GTCATAGTGGGAGTAACTTAGCTAGTA 59.281 40.741 0.00 0.00 35.54 1.82
5201 8939 8.277197 TCATAGTGGGAGTAACTTAGCTAGTAA 58.723 37.037 0.00 0.00 35.54 2.24
5202 8940 6.772360 AGTGGGAGTAACTTAGCTAGTAAC 57.228 41.667 0.00 0.00 35.54 2.50
5203 8941 6.251471 AGTGGGAGTAACTTAGCTAGTAACA 58.749 40.000 0.00 0.00 35.54 2.41
5204 8942 6.896307 AGTGGGAGTAACTTAGCTAGTAACAT 59.104 38.462 0.00 0.00 35.54 2.71
5205 8943 8.057623 AGTGGGAGTAACTTAGCTAGTAACATA 58.942 37.037 0.00 0.00 35.54 2.29
5206 8944 8.351461 GTGGGAGTAACTTAGCTAGTAACATAG 58.649 40.741 0.00 0.00 35.54 2.23
5214 8952 2.395654 GCTAGTAACATAGCGCACTCC 58.604 52.381 11.47 0.00 38.90 3.85
5215 8953 2.223735 GCTAGTAACATAGCGCACTCCA 60.224 50.000 11.47 0.00 38.90 3.86
5216 8954 3.737047 GCTAGTAACATAGCGCACTCCAA 60.737 47.826 11.47 0.00 38.90 3.53
5217 8955 3.543680 AGTAACATAGCGCACTCCAAT 57.456 42.857 11.47 0.00 0.00 3.16
5218 8956 4.665833 AGTAACATAGCGCACTCCAATA 57.334 40.909 11.47 0.00 0.00 1.90
5219 8957 5.018539 AGTAACATAGCGCACTCCAATAA 57.981 39.130 11.47 0.00 0.00 1.40
5220 8958 5.424757 AGTAACATAGCGCACTCCAATAAA 58.575 37.500 11.47 0.00 0.00 1.40
5221 8959 6.055588 AGTAACATAGCGCACTCCAATAAAT 58.944 36.000 11.47 0.00 0.00 1.40
5222 8960 5.835113 AACATAGCGCACTCCAATAAATT 57.165 34.783 11.47 0.00 0.00 1.82
5223 8961 5.835113 ACATAGCGCACTCCAATAAATTT 57.165 34.783 11.47 0.00 0.00 1.82
5224 8962 6.207691 ACATAGCGCACTCCAATAAATTTT 57.792 33.333 11.47 0.00 0.00 1.82
5225 8963 6.630071 ACATAGCGCACTCCAATAAATTTTT 58.370 32.000 11.47 0.00 0.00 1.94
5226 8964 6.531240 ACATAGCGCACTCCAATAAATTTTTG 59.469 34.615 11.47 1.41 0.00 2.44
5227 8965 3.679502 AGCGCACTCCAATAAATTTTTGC 59.320 39.130 11.47 0.00 0.00 3.68
5228 8966 3.679502 GCGCACTCCAATAAATTTTTGCT 59.320 39.130 0.30 0.00 0.00 3.91
5229 8967 4.152223 GCGCACTCCAATAAATTTTTGCTT 59.848 37.500 0.30 0.00 0.00 3.91
5230 8968 5.347364 GCGCACTCCAATAAATTTTTGCTTA 59.653 36.000 0.30 0.00 0.00 3.09
5231 8969 6.035975 GCGCACTCCAATAAATTTTTGCTTAT 59.964 34.615 0.30 0.00 0.00 1.73
5232 8970 7.393327 CGCACTCCAATAAATTTTTGCTTATG 58.607 34.615 0.00 0.19 0.00 1.90
5233 8971 7.063308 CGCACTCCAATAAATTTTTGCTTATGT 59.937 33.333 0.00 0.00 0.00 2.29
5234 8972 8.170553 GCACTCCAATAAATTTTTGCTTATGTG 58.829 33.333 0.00 6.81 0.00 3.21
5235 8973 8.658609 CACTCCAATAAATTTTTGCTTATGTGG 58.341 33.333 0.00 0.00 0.00 4.17
5236 8974 7.334171 ACTCCAATAAATTTTTGCTTATGTGGC 59.666 33.333 0.00 0.00 0.00 5.01
5237 8975 7.164122 TCCAATAAATTTTTGCTTATGTGGCA 58.836 30.769 0.00 0.00 37.97 4.92
5238 8976 7.663081 TCCAATAAATTTTTGCTTATGTGGCAA 59.337 29.630 0.00 0.00 46.12 4.52
5249 8987 7.403312 TGCTTATGTGGCAAGTATTTAATGT 57.597 32.000 0.00 0.00 36.71 2.71
5250 8988 7.257003 TGCTTATGTGGCAAGTATTTAATGTG 58.743 34.615 0.00 0.00 36.71 3.21
5251 8989 7.121907 TGCTTATGTGGCAAGTATTTAATGTGA 59.878 33.333 0.00 0.00 36.71 3.58
5252 8990 7.645340 GCTTATGTGGCAAGTATTTAATGTGAG 59.355 37.037 0.00 0.00 0.00 3.51
5253 8991 5.895636 TGTGGCAAGTATTTAATGTGAGG 57.104 39.130 0.00 0.00 0.00 3.86
5254 8992 5.321102 TGTGGCAAGTATTTAATGTGAGGT 58.679 37.500 0.00 0.00 0.00 3.85
5255 8993 5.182950 TGTGGCAAGTATTTAATGTGAGGTG 59.817 40.000 0.00 0.00 0.00 4.00
5256 8994 4.704540 TGGCAAGTATTTAATGTGAGGTGG 59.295 41.667 0.00 0.00 0.00 4.61
5257 8995 4.705023 GGCAAGTATTTAATGTGAGGTGGT 59.295 41.667 0.00 0.00 0.00 4.16
5258 8996 5.883673 GGCAAGTATTTAATGTGAGGTGGTA 59.116 40.000 0.00 0.00 0.00 3.25
5259 8997 6.376018 GGCAAGTATTTAATGTGAGGTGGTAA 59.624 38.462 0.00 0.00 0.00 2.85
5260 8998 7.248437 GCAAGTATTTAATGTGAGGTGGTAAC 58.752 38.462 0.00 0.00 0.00 2.50
5289 9027 4.178540 TGTTACTGTAACATAGCGCTTCC 58.821 43.478 25.14 0.00 43.23 3.46
5290 9028 2.311124 ACTGTAACATAGCGCTTCCC 57.689 50.000 18.68 0.00 0.00 3.97
5291 9029 1.553248 ACTGTAACATAGCGCTTCCCA 59.447 47.619 18.68 0.00 0.00 4.37
5292 9030 2.027561 ACTGTAACATAGCGCTTCCCAA 60.028 45.455 18.68 0.00 0.00 4.12
5293 9031 2.609459 CTGTAACATAGCGCTTCCCAAG 59.391 50.000 18.68 0.00 0.00 3.61
5294 9032 2.235155 TGTAACATAGCGCTTCCCAAGA 59.765 45.455 18.68 0.00 0.00 3.02
5295 9033 1.739067 AACATAGCGCTTCCCAAGAC 58.261 50.000 18.68 0.00 0.00 3.01
5296 9034 0.613260 ACATAGCGCTTCCCAAGACA 59.387 50.000 18.68 0.00 0.00 3.41
5297 9035 1.003118 ACATAGCGCTTCCCAAGACAA 59.997 47.619 18.68 0.00 0.00 3.18
5298 9036 1.667724 CATAGCGCTTCCCAAGACAAG 59.332 52.381 18.68 0.00 0.00 3.16
5299 9037 0.973632 TAGCGCTTCCCAAGACAAGA 59.026 50.000 18.68 0.00 0.00 3.02
5300 9038 0.326264 AGCGCTTCCCAAGACAAGAT 59.674 50.000 2.64 0.00 0.00 2.40
5301 9039 0.449388 GCGCTTCCCAAGACAAGATG 59.551 55.000 0.00 0.00 0.00 2.90
5302 9040 1.945819 GCGCTTCCCAAGACAAGATGA 60.946 52.381 0.00 0.00 0.00 2.92
5303 9041 2.005451 CGCTTCCCAAGACAAGATGAG 58.995 52.381 0.00 0.00 0.00 2.90
5304 9042 2.613977 CGCTTCCCAAGACAAGATGAGT 60.614 50.000 0.00 0.00 0.00 3.41
5305 9043 3.006247 GCTTCCCAAGACAAGATGAGTC 58.994 50.000 0.00 0.00 36.26 3.36
5307 9045 4.081420 GCTTCCCAAGACAAGATGAGTCTA 60.081 45.833 0.00 0.00 45.11 2.59
5308 9046 5.407407 TTCCCAAGACAAGATGAGTCTAC 57.593 43.478 0.00 0.00 45.11 2.59
5309 9047 4.416516 TCCCAAGACAAGATGAGTCTACA 58.583 43.478 0.00 0.00 45.11 2.74
5310 9048 4.838423 TCCCAAGACAAGATGAGTCTACAA 59.162 41.667 0.00 0.00 45.11 2.41
5311 9049 5.047021 TCCCAAGACAAGATGAGTCTACAAG 60.047 44.000 0.00 0.00 45.11 3.16
5312 9050 4.629200 CCAAGACAAGATGAGTCTACAAGC 59.371 45.833 0.00 0.00 45.11 4.01
5313 9051 5.477510 CAAGACAAGATGAGTCTACAAGCT 58.522 41.667 0.00 0.00 45.11 3.74
5314 9052 6.350528 CCAAGACAAGATGAGTCTACAAGCTA 60.351 42.308 0.00 0.00 45.11 3.32
5315 9053 6.842437 AGACAAGATGAGTCTACAAGCTAA 57.158 37.500 0.00 0.00 44.10 3.09
5316 9054 7.416964 AGACAAGATGAGTCTACAAGCTAAT 57.583 36.000 0.00 0.00 44.10 1.73
5317 9055 8.526667 AGACAAGATGAGTCTACAAGCTAATA 57.473 34.615 0.00 0.00 44.10 0.98
5318 9056 8.972127 AGACAAGATGAGTCTACAAGCTAATAA 58.028 33.333 0.00 0.00 44.10 1.40
5319 9057 9.587772 GACAAGATGAGTCTACAAGCTAATAAA 57.412 33.333 0.00 0.00 33.30 1.40
5325 9063 8.425577 TGAGTCTACAAGCTAATAAATGAAGC 57.574 34.615 0.00 0.00 36.48 3.86
5326 9064 7.495934 TGAGTCTACAAGCTAATAAATGAAGCC 59.504 37.037 0.00 0.00 36.92 4.35
5327 9065 7.338710 AGTCTACAAGCTAATAAATGAAGCCA 58.661 34.615 0.00 0.00 36.92 4.75
5328 9066 7.995488 AGTCTACAAGCTAATAAATGAAGCCAT 59.005 33.333 0.00 0.00 36.92 4.40
5329 9067 8.286097 GTCTACAAGCTAATAAATGAAGCCATC 58.714 37.037 0.00 0.00 36.92 3.51
5330 9068 8.213679 TCTACAAGCTAATAAATGAAGCCATCT 58.786 33.333 0.00 0.00 36.92 2.90
5331 9069 9.494271 CTACAAGCTAATAAATGAAGCCATCTA 57.506 33.333 0.00 0.00 36.92 1.98
5332 9070 8.930846 ACAAGCTAATAAATGAAGCCATCTAT 57.069 30.769 0.00 0.00 36.92 1.98
5333 9071 8.790718 ACAAGCTAATAAATGAAGCCATCTATG 58.209 33.333 0.00 0.00 36.92 2.23
5334 9072 9.006839 CAAGCTAATAAATGAAGCCATCTATGA 57.993 33.333 0.00 0.00 36.92 2.15
5335 9073 8.558973 AGCTAATAAATGAAGCCATCTATGAC 57.441 34.615 0.00 0.00 36.92 3.06
5336 9074 8.159447 AGCTAATAAATGAAGCCATCTATGACA 58.841 33.333 0.00 0.00 36.92 3.58
5337 9075 8.233190 GCTAATAAATGAAGCCATCTATGACAC 58.767 37.037 0.00 0.00 31.40 3.67
5338 9076 9.499479 CTAATAAATGAAGCCATCTATGACACT 57.501 33.333 0.00 0.00 31.40 3.55
5340 9078 8.839310 ATAAATGAAGCCATCTATGACACTAC 57.161 34.615 0.00 0.00 31.40 2.73
5341 9079 6.491714 AATGAAGCCATCTATGACACTACT 57.508 37.500 0.00 0.00 31.40 2.57
5342 9080 7.603180 AATGAAGCCATCTATGACACTACTA 57.397 36.000 0.00 0.00 31.40 1.82
5343 9081 7.789202 ATGAAGCCATCTATGACACTACTAT 57.211 36.000 0.00 0.00 0.00 2.12
5344 9082 7.220741 TGAAGCCATCTATGACACTACTATC 57.779 40.000 0.00 0.00 0.00 2.08
5345 9083 6.777580 TGAAGCCATCTATGACACTACTATCA 59.222 38.462 0.00 0.00 0.00 2.15
5346 9084 7.452813 TGAAGCCATCTATGACACTACTATCAT 59.547 37.037 0.00 0.00 38.99 2.45
5347 9085 7.167924 AGCCATCTATGACACTACTATCATG 57.832 40.000 0.00 0.00 36.26 3.07
5348 9086 6.723515 AGCCATCTATGACACTACTATCATGT 59.276 38.462 0.00 0.00 36.26 3.21
5349 9087 7.234371 AGCCATCTATGACACTACTATCATGTT 59.766 37.037 0.00 0.00 36.26 2.71
5350 9088 8.523658 GCCATCTATGACACTACTATCATGTTA 58.476 37.037 0.00 0.00 36.26 2.41
5351 9089 9.847706 CCATCTATGACACTACTATCATGTTAC 57.152 37.037 0.00 0.00 36.26 2.50
5356 9094 7.827819 TGACACTACTATCATGTTACTTTGC 57.172 36.000 0.00 0.00 0.00 3.68
5357 9095 7.382898 TGACACTACTATCATGTTACTTTGCA 58.617 34.615 0.00 0.00 0.00 4.08
5358 9096 8.040727 TGACACTACTATCATGTTACTTTGCAT 58.959 33.333 0.00 0.00 0.00 3.96
5359 9097 8.792830 ACACTACTATCATGTTACTTTGCATT 57.207 30.769 0.00 0.00 0.00 3.56
5360 9098 9.884636 ACACTACTATCATGTTACTTTGCATTA 57.115 29.630 0.00 0.00 0.00 1.90
5366 9104 9.888878 CTATCATGTTACTTTGCATTATGAAGG 57.111 33.333 0.00 0.00 0.00 3.46
5367 9105 7.701539 TCATGTTACTTTGCATTATGAAGGT 57.298 32.000 0.00 0.00 0.00 3.50
5368 9106 8.800370 TCATGTTACTTTGCATTATGAAGGTA 57.200 30.769 0.00 0.00 0.00 3.08
5369 9107 8.892723 TCATGTTACTTTGCATTATGAAGGTAG 58.107 33.333 0.00 0.00 0.00 3.18
5370 9108 8.677300 CATGTTACTTTGCATTATGAAGGTAGT 58.323 33.333 0.00 0.00 0.00 2.73
5371 9109 9.899661 ATGTTACTTTGCATTATGAAGGTAGTA 57.100 29.630 0.00 0.00 0.00 1.82
5372 9110 9.727859 TGTTACTTTGCATTATGAAGGTAGTAA 57.272 29.630 0.00 0.00 0.00 2.24
5373 9111 9.983804 GTTACTTTGCATTATGAAGGTAGTAAC 57.016 33.333 13.90 13.90 38.55 2.50
5374 9112 9.953565 TTACTTTGCATTATGAAGGTAGTAACT 57.046 29.630 0.00 0.00 0.00 2.24
5375 9113 8.863872 ACTTTGCATTATGAAGGTAGTAACTT 57.136 30.769 0.00 0.00 0.00 2.66
5376 9114 9.953565 ACTTTGCATTATGAAGGTAGTAACTTA 57.046 29.630 0.00 0.00 0.00 2.24
5379 9117 9.595823 TTGCATTATGAAGGTAGTAACTTAGAC 57.404 33.333 0.00 0.00 0.00 2.59
5380 9118 8.978472 TGCATTATGAAGGTAGTAACTTAGACT 58.022 33.333 0.00 0.00 0.00 3.24
5387 9125 9.578576 TGAAGGTAGTAACTTAGACTAGTTTCA 57.421 33.333 0.00 0.00 39.08 2.69
5390 9128 8.468399 AGGTAGTAACTTAGACTAGTTTCATGC 58.532 37.037 0.00 0.00 39.08 4.06
5391 9129 8.248945 GGTAGTAACTTAGACTAGTTTCATGCA 58.751 37.037 0.00 0.00 39.08 3.96
5392 9130 9.804758 GTAGTAACTTAGACTAGTTTCATGCAT 57.195 33.333 0.00 0.00 39.08 3.96
5397 9135 8.879342 ACTTAGACTAGTTTCATGCATATGAC 57.121 34.615 6.97 0.00 42.79 3.06
5398 9136 8.478066 ACTTAGACTAGTTTCATGCATATGACA 58.522 33.333 6.97 4.57 42.79 3.58
5399 9137 8.648557 TTAGACTAGTTTCATGCATATGACAC 57.351 34.615 6.97 0.00 42.79 3.67
5401 9139 8.011844 AGACTAGTTTCATGCATATGACACTA 57.988 34.615 6.97 13.16 46.92 2.74
5405 9143 6.882656 AGTTTCATGCATATGACACTAGTCT 58.117 36.000 6.97 0.00 46.92 3.24
5406 9144 8.011844 AGTTTCATGCATATGACACTAGTCTA 57.988 34.615 6.97 0.00 46.92 2.59
5407 9145 8.478066 AGTTTCATGCATATGACACTAGTCTAA 58.522 33.333 6.97 0.00 46.92 2.10
5408 9146 8.759641 GTTTCATGCATATGACACTAGTCTAAG 58.240 37.037 6.97 0.00 42.79 2.18
5409 9147 7.588497 TCATGCATATGACACTAGTCTAAGT 57.412 36.000 6.97 0.00 45.20 2.24
5410 9148 8.011844 TCATGCATATGACACTAGTCTAAGTT 57.988 34.615 6.97 0.00 45.20 2.66
5411 9149 9.131791 TCATGCATATGACACTAGTCTAAGTTA 57.868 33.333 6.97 0.00 45.20 2.24
5412 9150 9.186323 CATGCATATGACACTAGTCTAAGTTAC 57.814 37.037 6.97 0.00 45.20 2.50
5413 9151 8.521170 TGCATATGACACTAGTCTAAGTTACT 57.479 34.615 6.97 0.00 45.20 2.24
5414 9152 8.622157 TGCATATGACACTAGTCTAAGTTACTC 58.378 37.037 6.97 0.00 45.20 2.59
5415 9153 8.077386 GCATATGACACTAGTCTAAGTTACTCC 58.923 40.741 6.97 0.00 45.20 3.85
5416 9154 8.569641 CATATGACACTAGTCTAAGTTACTCCC 58.430 40.741 0.00 0.00 45.20 4.30
5417 9155 5.259632 TGACACTAGTCTAAGTTACTCCCC 58.740 45.833 0.00 0.00 45.20 4.81
5418 9156 5.222192 TGACACTAGTCTAAGTTACTCCCCA 60.222 44.000 0.00 0.00 45.20 4.96
5419 9157 5.015515 ACACTAGTCTAAGTTACTCCCCAC 58.984 45.833 0.00 0.00 0.00 4.61
5420 9158 5.222296 ACACTAGTCTAAGTTACTCCCCACT 60.222 44.000 0.00 0.00 0.00 4.00
5421 9159 6.012157 ACACTAGTCTAAGTTACTCCCCACTA 60.012 42.308 0.00 0.00 0.00 2.74
5422 9160 7.061688 CACTAGTCTAAGTTACTCCCCACTAT 58.938 42.308 0.00 0.00 0.00 2.12
5423 9161 7.013464 CACTAGTCTAAGTTACTCCCCACTATG 59.987 44.444 0.00 0.00 0.00 2.23
5424 9162 6.088541 AGTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
5425 9163 5.892686 AGTCTAAGTTACTCCCCACTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
5426 9164 5.068855 GTCTAAGTTACTCCCCACTATGACC 59.931 48.000 0.00 0.00 0.00 4.02
5427 9165 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
5428 9166 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
5429 9167 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
5430 9168 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
5431 9169 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
5432 9170 0.639943 TCCCCACTATGACCAGCCTA 59.360 55.000 0.00 0.00 0.00 3.93
5433 9171 1.009060 TCCCCACTATGACCAGCCTAA 59.991 52.381 0.00 0.00 0.00 2.69
5453 9191 6.975197 GCCTAATATTCTCTCAAAACTTTGCC 59.025 38.462 0.00 0.00 38.05 4.52
5480 9218 7.012989 ACCGAAGTAAATAGTTCTGCAAAAACT 59.987 33.333 16.00 16.00 40.06 2.66
5619 9357 4.381079 GGCTGTATAGATAGCTGCTGGTAC 60.381 50.000 13.43 8.28 39.63 3.34
5694 9432 1.673400 TGTGTTGGTCGTGTTCAATGG 59.327 47.619 0.00 0.00 0.00 3.16
5818 9556 5.635280 CAGGATGTAAGCACATATAAGGACG 59.365 44.000 0.00 0.00 45.58 4.79
5986 9725 5.023533 ACAGTTTTGCTAAGTCTCAGTCA 57.976 39.130 0.00 0.00 0.00 3.41
6004 9743 5.009710 TCAGTCAACTGAGACTTCGTTATGT 59.990 40.000 8.75 0.00 46.26 2.29
6019 9758 5.340803 TCGTTATGTCTCAGTTGATGCTAC 58.659 41.667 0.00 0.00 0.00 3.58
6020 9759 4.504461 CGTTATGTCTCAGTTGATGCTACC 59.496 45.833 0.00 0.00 0.00 3.18
6027 9766 4.081420 TCTCAGTTGATGCTACCTTCCTTC 60.081 45.833 0.00 0.00 0.00 3.46
6028 9767 3.582647 TCAGTTGATGCTACCTTCCTTCA 59.417 43.478 0.00 0.00 0.00 3.02
6036 9775 7.999679 TGATGCTACCTTCCTTCAATATTTTG 58.000 34.615 0.00 0.00 0.00 2.44
6037 9776 6.207691 TGCTACCTTCCTTCAATATTTTGC 57.792 37.500 0.00 0.00 32.61 3.68
6038 9777 5.714333 TGCTACCTTCCTTCAATATTTTGCA 59.286 36.000 0.00 0.00 32.61 4.08
6048 9787 6.639686 CCTTCAATATTTTGCATGGAGATTCG 59.360 38.462 0.00 0.00 32.61 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.146270 CAAATTGAAAAATTGATCGTGTTTCAC 57.854 29.630 13.08 0.00 37.79 3.18
23 24 7.972623 ATCGTTTTCAAAATACGTTCACAAA 57.027 28.000 0.00 0.00 36.70 2.83
75 76 6.446318 TGTTCAGGGATTTCGAAAATTTCAG 58.554 36.000 15.66 4.18 0.00 3.02
207 213 9.615295 AAAATGTTCAGCAATTTCAAAATATGC 57.385 25.926 11.40 11.40 35.05 3.14
440 475 4.444536 TGGACCGGTTATTCTATTTTCCG 58.555 43.478 9.42 0.00 38.05 4.30
593 632 1.326245 CGTCAAACTGTCGAGCAAACA 59.674 47.619 0.00 0.00 30.84 2.83
617 656 5.304686 AGGAATTCCCTATTTGACGCATA 57.695 39.130 21.22 0.00 45.48 3.14
648 687 5.232202 TGCTTTCTTATGACTTAGATTCGCG 59.768 40.000 0.00 0.00 0.00 5.87
660 699 5.560724 GGCCCATATAGTGCTTTCTTATGA 58.439 41.667 0.00 0.00 0.00 2.15
663 702 3.244422 CCGGCCCATATAGTGCTTTCTTA 60.244 47.826 0.00 0.00 0.00 2.10
704 743 4.383602 CGTTTTGACGGGCGCCTG 62.384 66.667 33.73 33.73 0.00 4.85
705 744 4.612412 TCGTTTTGACGGGCGCCT 62.612 61.111 28.56 7.30 0.00 5.52
706 745 3.652000 TTCGTTTTGACGGGCGCC 61.652 61.111 21.18 21.18 0.00 6.53
708 747 2.127906 CGTTCGTTTTGACGGGCG 60.128 61.111 0.00 1.25 0.00 6.13
709 748 2.426261 GCGTTCGTTTTGACGGGC 60.426 61.111 0.00 0.00 0.00 6.13
710 749 1.083015 CTGCGTTCGTTTTGACGGG 60.083 57.895 0.00 0.00 0.00 5.28
737 776 2.162851 CCATTTTAACGCGTACGCTTG 58.837 47.619 34.69 23.70 45.53 4.01
738 777 1.129064 CCCATTTTAACGCGTACGCTT 59.871 47.619 34.69 27.57 45.53 4.68
802 3301 2.483491 TGACGGCCCAAAACGTATTTAC 59.517 45.455 0.00 0.00 44.24 2.01
817 3316 3.670377 GCCCACCACTTTGACGGC 61.670 66.667 0.00 0.00 0.00 5.68
1097 3667 0.178935 GGAGGAGGAGGATGAGGAGG 60.179 65.000 0.00 0.00 0.00 4.30
1098 3668 0.539438 CGGAGGAGGAGGATGAGGAG 60.539 65.000 0.00 0.00 0.00 3.69
1099 3669 1.539165 CGGAGGAGGAGGATGAGGA 59.461 63.158 0.00 0.00 0.00 3.71
1125 3695 1.679305 GTCGGAGTCTGAGGAGGCA 60.679 63.158 0.58 0.00 0.00 4.75
1419 3989 4.787280 CTGACCTCCTCGGGGCCT 62.787 72.222 0.84 0.00 36.97 5.19
1621 4191 3.399330 CTCAAGGTTTAGTTTCGCTCCA 58.601 45.455 0.00 0.00 0.00 3.86
1624 4194 2.152016 GCCTCAAGGTTTAGTTTCGCT 58.848 47.619 0.00 0.00 37.57 4.93
1796 4370 5.953183 TGGCTTTGTATTGCTAAAGATGTG 58.047 37.500 0.00 0.00 36.29 3.21
1839 4413 3.371168 CCTGACACAAAACATGGTTTCG 58.629 45.455 5.55 3.12 0.00 3.46
2110 4807 8.252964 AGACGTGGTAATTAACTCTTGATTTC 57.747 34.615 1.50 0.00 0.00 2.17
2230 4927 2.368875 GACATGTACTACCCCATCCAGG 59.631 54.545 0.00 0.00 37.03 4.45
2231 4928 2.368875 GGACATGTACTACCCCATCCAG 59.631 54.545 0.00 0.00 0.00 3.86
2232 4929 2.293251 TGGACATGTACTACCCCATCCA 60.293 50.000 10.05 0.29 0.00 3.41
2233 4930 2.404559 TGGACATGTACTACCCCATCC 58.595 52.381 10.05 0.00 0.00 3.51
2234 4931 4.642429 GATTGGACATGTACTACCCCATC 58.358 47.826 10.05 4.40 0.00 3.51
2236 4933 2.432874 CGATTGGACATGTACTACCCCA 59.567 50.000 10.05 3.44 0.00 4.96
2238 4935 2.102588 AGCGATTGGACATGTACTACCC 59.897 50.000 10.05 1.24 0.00 3.69
2239 4936 3.454371 AGCGATTGGACATGTACTACC 57.546 47.619 10.05 1.65 0.00 3.18
2241 4938 3.196901 ACCAAGCGATTGGACATGTACTA 59.803 43.478 37.21 1.26 44.82 1.82
2243 4940 2.356135 ACCAAGCGATTGGACATGTAC 58.644 47.619 37.21 0.00 44.82 2.90
2244 4941 2.779755 ACCAAGCGATTGGACATGTA 57.220 45.000 37.21 0.00 44.82 2.29
2303 5807 6.296026 TGGTCTTACACAAGCTATCAGTTTT 58.704 36.000 0.00 0.00 0.00 2.43
2644 6148 3.632145 CACTTTTGAGCCAACCTGTTAGT 59.368 43.478 0.00 0.00 0.00 2.24
2761 6265 5.381757 TCAACACCCTACTAACAAAAGCAT 58.618 37.500 0.00 0.00 0.00 3.79
2968 6476 3.489785 CCATATTACTCGTCGCTCAAACC 59.510 47.826 0.00 0.00 0.00 3.27
3333 6843 1.265236 CTGAGTTCCAGGCACTCTCT 58.735 55.000 18.84 0.00 41.25 3.10
3784 7316 5.353394 TCAATACCTGGTCCATCAAGTAC 57.647 43.478 0.63 0.00 0.00 2.73
3816 7348 6.759497 ATTTAGCAGGGTAAACTGAATGTC 57.241 37.500 5.88 0.00 40.97 3.06
3912 7648 4.682860 CACACAAAATTCAGCATCCAACTC 59.317 41.667 0.00 0.00 0.00 3.01
3955 7691 9.295825 TGGACATTTCAATCTACAAAACAGTAT 57.704 29.630 0.00 0.00 0.00 2.12
4198 7936 6.926272 ACAGCAACAAAGAAAAACAAGTGTTA 59.074 30.769 0.00 0.00 37.25 2.41
4539 8277 4.556501 CGCCAAGTTTCACAGCAGAATAAA 60.557 41.667 0.00 0.00 0.00 1.40
4850 8588 6.238484 GCGTGAACTGAATAGGCATAATTCTT 60.238 38.462 8.19 0.00 34.95 2.52
5093 8831 2.489938 TACAAAACAGGGCTAGCAGG 57.510 50.000 18.24 7.51 0.00 4.85
5169 8907 4.216708 AGTTACTCCCACTATGACTAGCC 58.783 47.826 0.00 0.00 0.00 3.93
5170 8908 5.855740 AAGTTACTCCCACTATGACTAGC 57.144 43.478 0.00 0.00 0.00 3.42
5171 8909 6.773685 AGCTAAGTTACTCCCACTATGACTAG 59.226 42.308 0.00 0.00 0.00 2.57
5172 8910 6.670617 AGCTAAGTTACTCCCACTATGACTA 58.329 40.000 0.00 0.00 0.00 2.59
5173 8911 5.520751 AGCTAAGTTACTCCCACTATGACT 58.479 41.667 0.00 0.00 0.00 3.41
5174 8912 5.855740 AGCTAAGTTACTCCCACTATGAC 57.144 43.478 0.00 0.00 0.00 3.06
5175 8913 6.670617 ACTAGCTAAGTTACTCCCACTATGA 58.329 40.000 0.00 0.00 33.35 2.15
5176 8914 6.963083 ACTAGCTAAGTTACTCCCACTATG 57.037 41.667 0.00 0.00 33.35 2.23
5177 8915 8.057623 TGTTACTAGCTAAGTTACTCCCACTAT 58.942 37.037 0.00 0.00 38.33 2.12
5178 8916 7.405292 TGTTACTAGCTAAGTTACTCCCACTA 58.595 38.462 0.00 0.00 38.33 2.74
5179 8917 6.251471 TGTTACTAGCTAAGTTACTCCCACT 58.749 40.000 0.00 0.00 38.33 4.00
5180 8918 6.521151 TGTTACTAGCTAAGTTACTCCCAC 57.479 41.667 0.00 0.00 38.33 4.61
5181 8919 7.014038 GCTATGTTACTAGCTAAGTTACTCCCA 59.986 40.741 0.00 0.00 40.79 4.37
5182 8920 7.369607 GCTATGTTACTAGCTAAGTTACTCCC 58.630 42.308 0.00 0.00 40.79 4.30
5183 8921 7.076983 CGCTATGTTACTAGCTAAGTTACTCC 58.923 42.308 0.00 0.00 41.61 3.85
5184 8922 6.578172 GCGCTATGTTACTAGCTAAGTTACTC 59.422 42.308 0.00 0.00 41.61 2.59
5185 8923 6.039047 TGCGCTATGTTACTAGCTAAGTTACT 59.961 38.462 9.73 0.00 41.61 2.24
5186 8924 6.142002 GTGCGCTATGTTACTAGCTAAGTTAC 59.858 42.308 9.73 0.79 41.61 2.50
5187 8925 6.039047 AGTGCGCTATGTTACTAGCTAAGTTA 59.961 38.462 9.73 0.00 41.61 2.24
5188 8926 5.041940 GTGCGCTATGTTACTAGCTAAGTT 58.958 41.667 9.73 0.00 41.61 2.66
5189 8927 4.338682 AGTGCGCTATGTTACTAGCTAAGT 59.661 41.667 9.73 0.00 41.61 2.24
5190 8928 4.861210 AGTGCGCTATGTTACTAGCTAAG 58.139 43.478 9.73 0.00 41.61 2.18
5191 8929 4.261489 GGAGTGCGCTATGTTACTAGCTAA 60.261 45.833 9.73 0.00 41.61 3.09
5192 8930 3.252701 GGAGTGCGCTATGTTACTAGCTA 59.747 47.826 9.73 0.00 41.61 3.32
5193 8931 2.034812 GGAGTGCGCTATGTTACTAGCT 59.965 50.000 9.73 0.00 41.61 3.32
5194 8932 2.223735 TGGAGTGCGCTATGTTACTAGC 60.224 50.000 9.73 4.52 40.61 3.42
5195 8933 3.710326 TGGAGTGCGCTATGTTACTAG 57.290 47.619 9.73 0.00 0.00 2.57
5196 8934 4.665833 ATTGGAGTGCGCTATGTTACTA 57.334 40.909 9.73 0.00 0.00 1.82
5197 8935 3.543680 ATTGGAGTGCGCTATGTTACT 57.456 42.857 9.73 1.27 0.00 2.24
5198 8936 5.728351 TTTATTGGAGTGCGCTATGTTAC 57.272 39.130 9.73 0.00 0.00 2.50
5199 8937 6.935741 AATTTATTGGAGTGCGCTATGTTA 57.064 33.333 9.73 0.00 0.00 2.41
5200 8938 5.835113 AATTTATTGGAGTGCGCTATGTT 57.165 34.783 9.73 0.00 0.00 2.71
5201 8939 5.835113 AAATTTATTGGAGTGCGCTATGT 57.165 34.783 9.73 0.00 0.00 2.29
5202 8940 6.508404 GCAAAAATTTATTGGAGTGCGCTATG 60.508 38.462 9.73 0.00 0.00 2.23
5203 8941 5.519927 GCAAAAATTTATTGGAGTGCGCTAT 59.480 36.000 9.73 0.00 0.00 2.97
5204 8942 4.862018 GCAAAAATTTATTGGAGTGCGCTA 59.138 37.500 9.73 0.00 0.00 4.26
5205 8943 3.679502 GCAAAAATTTATTGGAGTGCGCT 59.320 39.130 9.73 0.00 0.00 5.92
5206 8944 3.679502 AGCAAAAATTTATTGGAGTGCGC 59.320 39.130 0.00 0.00 35.92 6.09
5207 8945 5.844301 AAGCAAAAATTTATTGGAGTGCG 57.156 34.783 12.13 0.00 35.92 5.34
5208 8946 8.170553 CACATAAGCAAAAATTTATTGGAGTGC 58.829 33.333 12.13 0.00 0.00 4.40
5209 8947 8.658609 CCACATAAGCAAAAATTTATTGGAGTG 58.341 33.333 12.13 0.00 0.00 3.51
5210 8948 7.334171 GCCACATAAGCAAAAATTTATTGGAGT 59.666 33.333 12.13 0.00 0.00 3.85
5211 8949 7.333921 TGCCACATAAGCAAAAATTTATTGGAG 59.666 33.333 12.13 0.00 37.28 3.86
5212 8950 7.164122 TGCCACATAAGCAAAAATTTATTGGA 58.836 30.769 12.13 0.00 37.28 3.53
5213 8951 7.375106 TGCCACATAAGCAAAAATTTATTGG 57.625 32.000 12.13 0.00 37.28 3.16
5225 8963 7.121907 TCACATTAAATACTTGCCACATAAGCA 59.878 33.333 0.00 0.00 38.81 3.91
5226 8964 7.479980 TCACATTAAATACTTGCCACATAAGC 58.520 34.615 0.00 0.00 0.00 3.09
5227 8965 8.131100 CCTCACATTAAATACTTGCCACATAAG 58.869 37.037 0.00 0.00 0.00 1.73
5228 8966 7.613801 ACCTCACATTAAATACTTGCCACATAA 59.386 33.333 0.00 0.00 0.00 1.90
5229 8967 7.066887 CACCTCACATTAAATACTTGCCACATA 59.933 37.037 0.00 0.00 0.00 2.29
5230 8968 5.951747 ACCTCACATTAAATACTTGCCACAT 59.048 36.000 0.00 0.00 0.00 3.21
5231 8969 5.182950 CACCTCACATTAAATACTTGCCACA 59.817 40.000 0.00 0.00 0.00 4.17
5232 8970 5.393027 CCACCTCACATTAAATACTTGCCAC 60.393 44.000 0.00 0.00 0.00 5.01
5233 8971 4.704540 CCACCTCACATTAAATACTTGCCA 59.295 41.667 0.00 0.00 0.00 4.92
5234 8972 4.705023 ACCACCTCACATTAAATACTTGCC 59.295 41.667 0.00 0.00 0.00 4.52
5235 8973 5.897377 ACCACCTCACATTAAATACTTGC 57.103 39.130 0.00 0.00 0.00 4.01
5236 8974 8.330466 TGTTACCACCTCACATTAAATACTTG 57.670 34.615 0.00 0.00 0.00 3.16
5268 9006 3.554731 GGGAAGCGCTATGTTACAGTAAC 59.445 47.826 12.05 15.58 39.11 2.50
5269 9007 3.196039 TGGGAAGCGCTATGTTACAGTAA 59.804 43.478 12.05 0.00 0.00 2.24
5270 9008 2.761767 TGGGAAGCGCTATGTTACAGTA 59.238 45.455 12.05 0.00 0.00 2.74
5271 9009 1.553248 TGGGAAGCGCTATGTTACAGT 59.447 47.619 12.05 0.00 0.00 3.55
5272 9010 2.309528 TGGGAAGCGCTATGTTACAG 57.690 50.000 12.05 0.00 0.00 2.74
5273 9011 2.235155 TCTTGGGAAGCGCTATGTTACA 59.765 45.455 12.05 1.24 0.00 2.41
5274 9012 2.608090 GTCTTGGGAAGCGCTATGTTAC 59.392 50.000 12.05 0.00 0.00 2.50
5275 9013 2.235155 TGTCTTGGGAAGCGCTATGTTA 59.765 45.455 12.05 0.00 0.00 2.41
5276 9014 1.003118 TGTCTTGGGAAGCGCTATGTT 59.997 47.619 12.05 0.00 0.00 2.71
5277 9015 0.613260 TGTCTTGGGAAGCGCTATGT 59.387 50.000 12.05 0.00 0.00 2.29
5278 9016 1.667724 CTTGTCTTGGGAAGCGCTATG 59.332 52.381 12.05 0.00 0.00 2.23
5279 9017 1.555075 TCTTGTCTTGGGAAGCGCTAT 59.445 47.619 12.05 0.00 0.00 2.97
5280 9018 0.973632 TCTTGTCTTGGGAAGCGCTA 59.026 50.000 12.05 0.00 0.00 4.26
5281 9019 0.326264 ATCTTGTCTTGGGAAGCGCT 59.674 50.000 2.64 2.64 0.00 5.92
5282 9020 0.449388 CATCTTGTCTTGGGAAGCGC 59.551 55.000 0.00 0.00 0.00 5.92
5283 9021 2.005451 CTCATCTTGTCTTGGGAAGCG 58.995 52.381 0.00 0.00 0.00 4.68
5284 9022 3.006247 GACTCATCTTGTCTTGGGAAGC 58.994 50.000 0.00 0.00 0.00 3.86
5285 9023 4.550076 AGACTCATCTTGTCTTGGGAAG 57.450 45.455 0.00 0.00 41.45 3.46
5286 9024 4.838423 TGTAGACTCATCTTGTCTTGGGAA 59.162 41.667 1.67 0.00 41.45 3.97
5287 9025 4.416516 TGTAGACTCATCTTGTCTTGGGA 58.583 43.478 1.67 0.00 41.45 4.37
5288 9026 4.808414 TGTAGACTCATCTTGTCTTGGG 57.192 45.455 1.67 0.00 41.45 4.12
5289 9027 4.629200 GCTTGTAGACTCATCTTGTCTTGG 59.371 45.833 1.67 0.00 41.45 3.61
5290 9028 5.477510 AGCTTGTAGACTCATCTTGTCTTG 58.522 41.667 1.67 0.00 41.45 3.02
5291 9029 5.736951 AGCTTGTAGACTCATCTTGTCTT 57.263 39.130 1.67 0.00 41.45 3.01
5292 9030 6.842437 TTAGCTTGTAGACTCATCTTGTCT 57.158 37.500 0.00 0.00 45.48 3.41
5293 9031 9.587772 TTTATTAGCTTGTAGACTCATCTTGTC 57.412 33.333 0.00 0.00 36.29 3.18
5299 9037 9.050601 GCTTCATTTATTAGCTTGTAGACTCAT 57.949 33.333 0.00 0.00 32.26 2.90
5300 9038 7.495934 GGCTTCATTTATTAGCTTGTAGACTCA 59.504 37.037 0.00 0.00 35.30 3.41
5301 9039 7.495934 TGGCTTCATTTATTAGCTTGTAGACTC 59.504 37.037 0.00 0.00 35.30 3.36
5302 9040 7.338710 TGGCTTCATTTATTAGCTTGTAGACT 58.661 34.615 0.00 0.00 35.30 3.24
5303 9041 7.553881 TGGCTTCATTTATTAGCTTGTAGAC 57.446 36.000 0.00 0.00 35.30 2.59
5304 9042 8.213679 AGATGGCTTCATTTATTAGCTTGTAGA 58.786 33.333 0.00 0.00 35.30 2.59
5305 9043 8.388484 AGATGGCTTCATTTATTAGCTTGTAG 57.612 34.615 0.00 0.00 35.30 2.74
5307 9045 8.790718 CATAGATGGCTTCATTTATTAGCTTGT 58.209 33.333 0.00 0.00 35.30 3.16
5308 9046 9.006839 TCATAGATGGCTTCATTTATTAGCTTG 57.993 33.333 0.00 0.00 35.30 4.01
5309 9047 9.007901 GTCATAGATGGCTTCATTTATTAGCTT 57.992 33.333 0.00 0.00 35.30 3.74
5310 9048 8.159447 TGTCATAGATGGCTTCATTTATTAGCT 58.841 33.333 3.03 0.00 35.30 3.32
5311 9049 8.233190 GTGTCATAGATGGCTTCATTTATTAGC 58.767 37.037 3.03 0.00 32.56 3.09
5312 9050 9.499479 AGTGTCATAGATGGCTTCATTTATTAG 57.501 33.333 3.03 0.00 32.56 1.73
5314 9052 9.277783 GTAGTGTCATAGATGGCTTCATTTATT 57.722 33.333 3.03 0.00 32.56 1.40
5315 9053 8.654997 AGTAGTGTCATAGATGGCTTCATTTAT 58.345 33.333 3.03 0.00 32.56 1.40
5316 9054 8.023021 AGTAGTGTCATAGATGGCTTCATTTA 57.977 34.615 3.03 0.00 32.56 1.40
5317 9055 6.893583 AGTAGTGTCATAGATGGCTTCATTT 58.106 36.000 3.03 0.00 32.56 2.32
5318 9056 6.491714 AGTAGTGTCATAGATGGCTTCATT 57.508 37.500 3.03 0.00 32.56 2.57
5319 9057 7.452813 TGATAGTAGTGTCATAGATGGCTTCAT 59.547 37.037 3.03 0.00 32.56 2.57
5320 9058 6.777580 TGATAGTAGTGTCATAGATGGCTTCA 59.222 38.462 3.03 0.00 32.56 3.02
5321 9059 7.220741 TGATAGTAGTGTCATAGATGGCTTC 57.779 40.000 0.00 0.00 32.56 3.86
5322 9060 7.234371 ACATGATAGTAGTGTCATAGATGGCTT 59.766 37.037 9.25 0.00 33.03 4.35
5323 9061 6.723515 ACATGATAGTAGTGTCATAGATGGCT 59.276 38.462 9.25 0.00 33.03 4.75
5324 9062 6.929625 ACATGATAGTAGTGTCATAGATGGC 58.070 40.000 9.25 0.00 33.03 4.40
5325 9063 9.847706 GTAACATGATAGTAGTGTCATAGATGG 57.152 37.037 9.25 0.82 33.03 3.51
5330 9068 9.529325 GCAAAGTAACATGATAGTAGTGTCATA 57.471 33.333 9.25 0.00 33.03 2.15
5331 9069 8.040727 TGCAAAGTAACATGATAGTAGTGTCAT 58.959 33.333 0.00 4.08 35.01 3.06
5332 9070 7.382898 TGCAAAGTAACATGATAGTAGTGTCA 58.617 34.615 0.00 0.00 0.00 3.58
5333 9071 7.827819 TGCAAAGTAACATGATAGTAGTGTC 57.172 36.000 0.00 0.00 0.00 3.67
5334 9072 8.792830 AATGCAAAGTAACATGATAGTAGTGT 57.207 30.769 0.00 0.00 0.00 3.55
5340 9078 9.888878 CCTTCATAATGCAAAGTAACATGATAG 57.111 33.333 0.00 0.00 0.00 2.08
5341 9079 9.407380 ACCTTCATAATGCAAAGTAACATGATA 57.593 29.630 0.00 0.00 0.00 2.15
5342 9080 8.297470 ACCTTCATAATGCAAAGTAACATGAT 57.703 30.769 0.00 0.00 0.00 2.45
5343 9081 7.701539 ACCTTCATAATGCAAAGTAACATGA 57.298 32.000 0.00 0.00 0.00 3.07
5344 9082 8.677300 ACTACCTTCATAATGCAAAGTAACATG 58.323 33.333 0.00 0.00 0.00 3.21
5345 9083 8.807948 ACTACCTTCATAATGCAAAGTAACAT 57.192 30.769 0.00 0.00 0.00 2.71
5346 9084 9.727859 TTACTACCTTCATAATGCAAAGTAACA 57.272 29.630 0.00 0.00 0.00 2.41
5347 9085 9.983804 GTTACTACCTTCATAATGCAAAGTAAC 57.016 33.333 0.00 0.00 39.37 2.50
5348 9086 9.953565 AGTTACTACCTTCATAATGCAAAGTAA 57.046 29.630 0.00 0.00 0.00 2.24
5349 9087 9.953565 AAGTTACTACCTTCATAATGCAAAGTA 57.046 29.630 0.00 0.00 0.00 2.24
5350 9088 8.863872 AAGTTACTACCTTCATAATGCAAAGT 57.136 30.769 0.00 0.00 0.00 2.66
5353 9091 9.595823 GTCTAAGTTACTACCTTCATAATGCAA 57.404 33.333 0.00 0.00 0.00 4.08
5354 9092 8.978472 AGTCTAAGTTACTACCTTCATAATGCA 58.022 33.333 0.00 0.00 0.00 3.96
5361 9099 9.578576 TGAAACTAGTCTAAGTTACTACCTTCA 57.421 33.333 0.00 0.00 38.76 3.02
5364 9102 8.468399 GCATGAAACTAGTCTAAGTTACTACCT 58.532 37.037 0.00 0.00 38.76 3.08
5365 9103 8.248945 TGCATGAAACTAGTCTAAGTTACTACC 58.751 37.037 0.00 0.00 38.76 3.18
5366 9104 9.804758 ATGCATGAAACTAGTCTAAGTTACTAC 57.195 33.333 0.00 0.00 38.76 2.73
5371 9109 9.319143 GTCATATGCATGAAACTAGTCTAAGTT 57.681 33.333 10.16 0.00 42.79 2.66
5372 9110 8.478066 TGTCATATGCATGAAACTAGTCTAAGT 58.522 33.333 10.16 0.00 42.79 2.24
5373 9111 8.759641 GTGTCATATGCATGAAACTAGTCTAAG 58.240 37.037 10.16 0.00 43.51 2.18
5374 9112 8.648557 GTGTCATATGCATGAAACTAGTCTAA 57.351 34.615 10.16 0.00 43.51 2.10
5382 9120 8.648557 TTAGACTAGTGTCATATGCATGAAAC 57.351 34.615 10.16 5.95 46.12 2.78
5383 9121 8.478066 ACTTAGACTAGTGTCATATGCATGAAA 58.522 33.333 10.16 0.00 42.79 2.69
5384 9122 8.011844 ACTTAGACTAGTGTCATATGCATGAA 57.988 34.615 10.16 0.00 42.79 2.57
5385 9123 7.588497 ACTTAGACTAGTGTCATATGCATGA 57.412 36.000 10.16 0.00 45.20 3.07
5386 9124 9.186323 GTAACTTAGACTAGTGTCATATGCATG 57.814 37.037 10.16 0.00 45.20 4.06
5387 9125 9.137459 AGTAACTTAGACTAGTGTCATATGCAT 57.863 33.333 3.79 3.79 45.20 3.96
5388 9126 8.521170 AGTAACTTAGACTAGTGTCATATGCA 57.479 34.615 0.00 0.00 45.20 3.96
5389 9127 8.077386 GGAGTAACTTAGACTAGTGTCATATGC 58.923 40.741 0.00 0.00 45.20 3.14
5390 9128 8.569641 GGGAGTAACTTAGACTAGTGTCATATG 58.430 40.741 0.00 0.00 45.20 1.78
5391 9129 7.724951 GGGGAGTAACTTAGACTAGTGTCATAT 59.275 40.741 0.00 0.00 45.20 1.78
5392 9130 7.059156 GGGGAGTAACTTAGACTAGTGTCATA 58.941 42.308 0.00 0.00 45.20 2.15
5393 9131 5.892686 GGGGAGTAACTTAGACTAGTGTCAT 59.107 44.000 0.00 0.00 45.20 3.06
5394 9132 5.222192 TGGGGAGTAACTTAGACTAGTGTCA 60.222 44.000 0.00 0.00 45.20 3.58
5395 9133 5.125257 GTGGGGAGTAACTTAGACTAGTGTC 59.875 48.000 0.00 0.00 43.22 3.67
5396 9134 5.015515 GTGGGGAGTAACTTAGACTAGTGT 58.984 45.833 0.00 0.00 0.00 3.55
5397 9135 5.262804 AGTGGGGAGTAACTTAGACTAGTG 58.737 45.833 0.00 0.00 0.00 2.74
5398 9136 5.533333 AGTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
5399 9137 7.229106 GTCATAGTGGGGAGTAACTTAGACTAG 59.771 44.444 0.00 0.00 31.58 2.57
5400 9138 7.059156 GTCATAGTGGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 31.58 2.59
5401 9139 5.892686 GTCATAGTGGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 31.58 3.24
5402 9140 5.068855 GGTCATAGTGGGGAGTAACTTAGAC 59.931 48.000 0.00 0.00 32.58 2.59
5403 9141 5.206587 GGTCATAGTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
5404 9142 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
5405 9143 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
5406 9144 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
5407 9145 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
5408 9146 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
5409 9147 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
5410 9148 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
5411 9149 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
5412 9150 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
5413 9151 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
5414 9152 1.507140 TTAGGCTGGTCATAGTGGGG 58.493 55.000 0.00 0.00 0.00 4.96
5415 9153 5.249393 AGAATATTAGGCTGGTCATAGTGGG 59.751 44.000 0.00 0.00 0.00 4.61
5416 9154 6.212388 AGAGAATATTAGGCTGGTCATAGTGG 59.788 42.308 0.00 0.00 0.00 4.00
5417 9155 7.039434 TGAGAGAATATTAGGCTGGTCATAGTG 60.039 40.741 0.00 0.00 0.00 2.74
5418 9156 7.013220 TGAGAGAATATTAGGCTGGTCATAGT 58.987 38.462 0.00 0.00 0.00 2.12
5419 9157 7.473735 TGAGAGAATATTAGGCTGGTCATAG 57.526 40.000 0.00 0.00 0.00 2.23
5420 9158 7.855784 TTGAGAGAATATTAGGCTGGTCATA 57.144 36.000 0.00 0.00 0.00 2.15
5421 9159 6.753913 TTGAGAGAATATTAGGCTGGTCAT 57.246 37.500 0.00 0.00 0.00 3.06
5422 9160 6.560003 TTTGAGAGAATATTAGGCTGGTCA 57.440 37.500 0.00 0.00 0.00 4.02
5423 9161 7.051000 AGTTTTGAGAGAATATTAGGCTGGTC 58.949 38.462 0.00 0.00 0.00 4.02
5424 9162 6.963322 AGTTTTGAGAGAATATTAGGCTGGT 58.037 36.000 0.00 0.00 0.00 4.00
5425 9163 7.872113 AAGTTTTGAGAGAATATTAGGCTGG 57.128 36.000 0.00 0.00 0.00 4.85
5426 9164 7.699812 GCAAAGTTTTGAGAGAATATTAGGCTG 59.300 37.037 8.70 0.00 40.55 4.85
5427 9165 7.148000 GGCAAAGTTTTGAGAGAATATTAGGCT 60.148 37.037 8.70 0.00 40.55 4.58
5428 9166 6.975197 GGCAAAGTTTTGAGAGAATATTAGGC 59.025 38.462 8.70 0.00 40.55 3.93
5429 9167 7.970614 GTGGCAAAGTTTTGAGAGAATATTAGG 59.029 37.037 8.70 0.00 40.55 2.69
5430 9168 7.970614 GGTGGCAAAGTTTTGAGAGAATATTAG 59.029 37.037 8.70 0.00 40.55 1.73
5431 9169 7.361713 CGGTGGCAAAGTTTTGAGAGAATATTA 60.362 37.037 8.70 0.00 40.55 0.98
5432 9170 6.570378 CGGTGGCAAAGTTTTGAGAGAATATT 60.570 38.462 8.70 0.00 40.55 1.28
5433 9171 5.106157 CGGTGGCAAAGTTTTGAGAGAATAT 60.106 40.000 8.70 0.00 40.55 1.28
5453 9191 5.856126 TTGCAGAACTATTTACTTCGGTG 57.144 39.130 0.00 0.00 0.00 4.94
5619 9357 3.753434 ACCGCAGAGCAGACCTCG 61.753 66.667 0.00 0.00 45.54 4.63
5694 9432 1.066787 GTGGAGAAGCCCTCACAGTAC 60.067 57.143 6.13 0.00 43.76 2.73
5818 9556 2.982744 GCCCGCCTCTTTGCAACTC 61.983 63.158 0.00 0.00 0.00 3.01
5994 9733 4.867047 AGCATCAACTGAGACATAACGAAG 59.133 41.667 0.00 0.00 0.00 3.79
6004 9743 3.445008 AGGAAGGTAGCATCAACTGAGA 58.555 45.455 0.00 0.00 0.00 3.27
6011 9750 7.416664 GCAAAATATTGAAGGAAGGTAGCATCA 60.417 37.037 0.00 0.00 38.94 3.07
6019 9758 6.097270 TCTCCATGCAAAATATTGAAGGAAGG 59.903 38.462 0.00 0.00 38.94 3.46
6020 9759 7.104043 TCTCCATGCAAAATATTGAAGGAAG 57.896 36.000 0.00 0.00 38.94 3.46
6027 9766 7.416817 TGTACGAATCTCCATGCAAAATATTG 58.583 34.615 0.00 0.00 39.65 1.90
6028 9767 7.566760 TGTACGAATCTCCATGCAAAATATT 57.433 32.000 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.