Multiple sequence alignment - TraesCS7D01G282800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G282800 chr7D 100.000 4978 0 0 1 4978 290548455 290543478 0.000000e+00 9193.0
1 TraesCS7D01G282800 chr7D 100.000 642 0 0 5253 5894 290543203 290542562 0.000000e+00 1186.0
2 TraesCS7D01G282800 chr7D 93.386 378 18 4 1 376 122023616 122023244 2.400000e-153 553.0
3 TraesCS7D01G282800 chr7D 92.838 377 21 3 1 376 7940153 7939782 5.200000e-150 542.0
4 TraesCS7D01G282800 chr7D 90.667 75 6 1 412 485 122023284 122023210 1.350000e-16 99.0
5 TraesCS7D01G282800 chr7D 91.549 71 5 1 3869 3939 109017068 109016999 4.860000e-16 97.1
6 TraesCS7D01G282800 chr7D 93.617 47 3 0 1771 1817 125836501 125836547 2.950000e-08 71.3
7 TraesCS7D01G282800 chr7A 96.739 3128 69 11 521 3625 328990895 328987778 0.000000e+00 5180.0
8 TraesCS7D01G282800 chr7A 95.524 1318 49 3 3662 4978 328987702 328986394 0.000000e+00 2098.0
9 TraesCS7D01G282800 chr7A 94.548 642 33 2 5253 5894 328986308 328985669 0.000000e+00 990.0
10 TraesCS7D01G282800 chr7A 89.636 550 30 5 1 543 328992814 328992285 0.000000e+00 675.0
11 TraesCS7D01G282800 chr7A 84.161 644 97 5 5253 5894 698971722 698972362 2.330000e-173 619.0
12 TraesCS7D01G282800 chr7A 83.696 644 98 7 5253 5894 698839709 698840347 8.450000e-168 601.0
13 TraesCS7D01G282800 chr7A 84.337 83 8 4 3559 3641 510146074 510146151 6.330000e-10 76.8
14 TraesCS7D01G282800 chr7B 96.347 1916 43 5 1765 3658 361571059 361569149 0.000000e+00 3125.0
15 TraesCS7D01G282800 chr7B 97.662 1112 22 3 662 1773 361573399 361572292 0.000000e+00 1906.0
16 TraesCS7D01G282800 chr7B 95.301 1128 32 7 3853 4978 361568851 361567743 0.000000e+00 1770.0
17 TraesCS7D01G282800 chr7B 93.146 642 44 0 5253 5894 361567664 361567023 0.000000e+00 942.0
18 TraesCS7D01G282800 chr7B 95.052 384 16 3 1 383 361581806 361581425 8.450000e-168 601.0
19 TraesCS7D01G282800 chr7B 85.468 523 75 1 5373 5894 68756785 68756263 1.440000e-150 544.0
20 TraesCS7D01G282800 chr7B 91.919 297 24 0 367 663 361573748 361573452 3.290000e-112 416.0
21 TraesCS7D01G282800 chr7B 97.021 235 6 1 3662 3895 361569086 361568852 1.540000e-105 394.0
22 TraesCS7D01G282800 chr7B 95.238 42 2 0 1730 1771 493525850 493525891 3.810000e-07 67.6
23 TraesCS7D01G282800 chr7B 95.238 42 1 1 1731 1771 457403485 457403444 1.370000e-06 65.8
24 TraesCS7D01G282800 chr1A 85.870 644 89 2 5253 5894 102377102 102376459 0.000000e+00 684.0
25 TraesCS7D01G282800 chr1A 94.030 67 3 1 3873 3939 77284446 77284381 3.760000e-17 100.0
26 TraesCS7D01G282800 chr5A 85.559 644 90 3 5253 5894 477718271 477717629 0.000000e+00 671.0
27 TraesCS7D01G282800 chr2A 91.207 489 33 5 1 486 535803103 535803584 0.000000e+00 656.0
28 TraesCS7D01G282800 chr6B 83.412 633 101 3 5264 5894 9160230 9160860 8.510000e-163 584.0
29 TraesCS7D01G282800 chr6B 85.526 76 9 2 3564 3638 435313263 435313189 1.760000e-10 78.7
30 TraesCS7D01G282800 chr6B 86.111 72 9 1 415 485 551313178 551313249 6.330000e-10 76.8
31 TraesCS7D01G282800 chr6B 84.722 72 10 1 415 485 551628824 551628895 2.950000e-08 71.3
32 TraesCS7D01G282800 chr6B 97.436 39 1 0 1730 1768 46424665 46424703 3.810000e-07 67.6
33 TraesCS7D01G282800 chr3A 93.122 378 25 1 1 377 333919580 333919203 2.400000e-153 553.0
34 TraesCS7D01G282800 chr3A 91.549 71 4 2 3869 3939 681084032 681084100 4.860000e-16 97.1
35 TraesCS7D01G282800 chr3A 100.000 39 0 0 1733 1771 210248517 210248555 8.190000e-09 73.1
36 TraesCS7D01G282800 chr4A 94.183 361 20 1 1 360 115551930 115552290 3.100000e-152 549.0
37 TraesCS7D01G282800 chr4A 92.308 377 23 3 1 376 683475887 683475516 1.120000e-146 531.0
38 TraesCS7D01G282800 chr4A 93.421 76 4 1 412 486 683475556 683475481 1.740000e-20 111.0
39 TraesCS7D01G282800 chr1B 92.493 373 25 3 1 370 297189140 297189512 1.120000e-146 531.0
40 TraesCS7D01G282800 chr1B 95.385 65 1 2 3873 3935 325272394 325272458 1.040000e-17 102.0
41 TraesCS7D01G282800 chr1D 80.921 608 111 5 5290 5894 367850580 367851185 5.340000e-130 475.0
42 TraesCS7D01G282800 chr1D 93.939 66 3 1 3874 3939 181630490 181630554 1.350000e-16 99.0
43 TraesCS7D01G282800 chr3B 95.522 67 2 1 3873 3939 494709446 494709381 8.080000e-19 106.0
44 TraesCS7D01G282800 chr3B 85.714 84 8 4 3558 3638 294969532 294969450 1.050000e-12 86.1
45 TraesCS7D01G282800 chr3B 95.455 44 1 1 1728 1771 794343699 794343741 1.060000e-07 69.4
46 TraesCS7D01G282800 chr3B 95.122 41 2 0 1731 1771 663125449 663125489 1.370000e-06 65.8
47 TraesCS7D01G282800 chrUn 94.030 67 2 2 3871 3935 99119092 99119158 3.760000e-17 100.0
48 TraesCS7D01G282800 chr5D 85.542 83 9 3 3559 3639 288588425 288588506 3.790000e-12 84.2
49 TraesCS7D01G282800 chr5D 83.951 81 10 3 3559 3637 28479950 28480029 2.280000e-09 75.0
50 TraesCS7D01G282800 chr6D 85.000 80 9 2 3555 3632 78352777 78352699 1.760000e-10 78.7
51 TraesCS7D01G282800 chr4B 85.333 75 10 1 412 485 627439880 627439954 6.330000e-10 76.8
52 TraesCS7D01G282800 chr4D 81.111 90 13 3 3559 3645 32768479 32768391 1.060000e-07 69.4
53 TraesCS7D01G282800 chr6A 95.000 40 2 0 1732 1771 23594001 23593962 4.930000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G282800 chr7D 290542562 290548455 5893 True 5189.50 9193 100.000000 1 5894 2 chr7D.!!$R4 5893
1 TraesCS7D01G282800 chr7A 328985669 328992814 7145 True 2235.75 5180 94.111750 1 5894 4 chr7A.!!$R1 5893
2 TraesCS7D01G282800 chr7A 698971722 698972362 640 False 619.00 619 84.161000 5253 5894 1 chr7A.!!$F3 641
3 TraesCS7D01G282800 chr7A 698839709 698840347 638 False 601.00 601 83.696000 5253 5894 1 chr7A.!!$F2 641
4 TraesCS7D01G282800 chr7B 361567023 361573748 6725 True 1425.50 3125 95.232667 367 5894 6 chr7B.!!$R4 5527
5 TraesCS7D01G282800 chr7B 68756263 68756785 522 True 544.00 544 85.468000 5373 5894 1 chr7B.!!$R1 521
6 TraesCS7D01G282800 chr1A 102376459 102377102 643 True 684.00 684 85.870000 5253 5894 1 chr1A.!!$R2 641
7 TraesCS7D01G282800 chr5A 477717629 477718271 642 True 671.00 671 85.559000 5253 5894 1 chr5A.!!$R1 641
8 TraesCS7D01G282800 chr6B 9160230 9160860 630 False 584.00 584 83.412000 5264 5894 1 chr6B.!!$F1 630
9 TraesCS7D01G282800 chr1D 367850580 367851185 605 False 475.00 475 80.921000 5290 5894 1 chr1D.!!$F2 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 246 1.089920 GCATTGCTCCTGTGGTGTAG 58.910 55.000 0.16 0.0 0.00 2.74 F
477 479 1.992947 GCAACGCGCGTCACTAATA 59.007 52.632 37.77 0.0 0.00 0.98 F
1872 4586 0.459237 CTCTAGCTTGTCCGCCACTG 60.459 60.000 0.00 0.0 0.00 3.66 F
2024 4738 1.081442 GTTGCTAAACGGTGCAGGC 60.081 57.895 0.00 0.0 40.46 4.85 F
3313 6048 0.326264 AGCACACATGAGACCTTCCC 59.674 55.000 0.00 0.0 0.00 3.97 F
4423 7264 0.040058 TGGATTGAACCAGGCTGCAT 59.960 50.000 9.56 0.0 34.77 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 3199 1.067776 GGACGGAGGGAGTATTATGCG 60.068 57.143 0.00 0.0 0.00 4.73 R
2328 5042 1.344438 TGCATGACTTCCTTCACGACT 59.656 47.619 0.00 0.0 0.00 4.18 R
2905 5619 1.811965 CATTTCATGGTCTGGACGCAA 59.188 47.619 0.00 0.0 0.00 4.85 R
3990 6831 3.055819 GTGATGGTCACCAGTGTGTAGAT 60.056 47.826 1.19 0.0 41.37 1.98 R
4550 7391 0.037046 GTGCATCTTGGCCTTTTGGG 60.037 55.000 3.32 0.0 40.82 4.12 R
5744 8587 1.004277 TGGGTACATCTGGGCTCAAAC 59.996 52.381 0.00 0.0 0.00 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 154 7.280730 TGCTTTCAAAATTGCTCGATTTATG 57.719 32.000 0.00 0.00 0.00 1.90
245 246 1.089920 GCATTGCTCCTGTGGTGTAG 58.910 55.000 0.16 0.00 0.00 2.74
267 268 9.208022 TGTAGCAACTATTACATCATGCTATTC 57.792 33.333 8.34 0.00 45.04 1.75
281 282 9.609346 CATCATGCTATTCATATCACCTTGATA 57.391 33.333 0.00 0.00 42.83 2.15
297 298 9.076781 TCACCTTGATATTTCATTGTTCTGAAA 57.923 29.630 2.11 2.11 46.13 2.69
477 479 1.992947 GCAACGCGCGTCACTAATA 59.007 52.632 37.77 0.00 0.00 0.98
652 2071 5.163602 CGTATCTGCATAAGGTAGATCTCCC 60.164 48.000 0.00 0.00 44.50 4.30
702 2175 6.687081 TGTTCTACGTTTTTCTGGTCAATT 57.313 33.333 0.00 0.00 0.00 2.32
779 2252 3.256879 TCCAAAAATAAAGCACGCCATCA 59.743 39.130 0.00 0.00 0.00 3.07
978 2451 6.287525 TCCCATTTGTTCTTGGTTTTGAATC 58.712 36.000 0.00 0.00 0.00 2.52
1231 2704 8.271312 TGGCATAATACCTAGTTTTTGTGTAC 57.729 34.615 0.00 0.00 0.00 2.90
1361 2834 3.705604 TCTTTCGCCTTTTCAAAAGCAG 58.294 40.909 4.15 0.82 0.00 4.24
1587 3060 5.247792 TCCTAGTGGTAAGACCTTTTCCTTC 59.752 44.000 0.00 0.00 39.58 3.46
1726 3199 8.685838 ACTAGAATGGAGTCAGAGATAGTTAC 57.314 38.462 0.00 0.00 0.00 2.50
1805 4519 7.070571 ACAAATCCAAGTCAACTAATTTGGGAA 59.929 33.333 19.16 0.00 40.33 3.97
1806 4520 7.797121 AATCCAAGTCAACTAATTTGGGAAT 57.203 32.000 2.61 0.00 40.33 3.01
1872 4586 0.459237 CTCTAGCTTGTCCGCCACTG 60.459 60.000 0.00 0.00 0.00 3.66
2024 4738 1.081442 GTTGCTAAACGGTGCAGGC 60.081 57.895 0.00 0.00 40.46 4.85
2328 5042 2.642311 TCATAGTGACAAAGCCCTGGAA 59.358 45.455 0.00 0.00 0.00 3.53
2421 5135 1.339929 CAAAGGTTACTGGGTGTTGGC 59.660 52.381 0.00 0.00 0.00 4.52
2462 5176 4.149922 TGCAGACGAGACGATAACAAAAAG 59.850 41.667 0.00 0.00 0.00 2.27
2810 5524 1.558233 TCTCGTTCTTCCCCCTTCTC 58.442 55.000 0.00 0.00 0.00 2.87
2917 5631 3.890674 GGTCATTGCGTCCAGACC 58.109 61.111 0.00 0.00 43.18 3.85
3037 5772 1.347707 AGGAATCTGAAACGCCTCACA 59.652 47.619 0.00 0.00 0.00 3.58
3313 6048 0.326264 AGCACACATGAGACCTTCCC 59.674 55.000 0.00 0.00 0.00 3.97
3376 6111 6.494952 TCTGTTATGGAGGTACTTCTCTTCT 58.505 40.000 4.85 0.00 41.55 2.85
4201 7042 9.757227 CAATTTTTGGTATTTAGGTGTCTGAAA 57.243 29.630 0.00 0.00 0.00 2.69
4220 7061 4.819088 TGAAATTCTCCGTCACATCAAACA 59.181 37.500 0.00 0.00 0.00 2.83
4253 7094 8.496707 AATTTGAAGAAGTTCAGCACAAATTT 57.503 26.923 21.77 13.82 43.66 1.82
4319 7160 3.003275 TCGTCACCAGCAACTCATTTTTC 59.997 43.478 0.00 0.00 0.00 2.29
4372 7213 0.463833 GCCCACTCTTAACATCCGGG 60.464 60.000 0.00 0.00 35.18 5.73
4374 7215 0.180406 CCACTCTTAACATCCGGGGG 59.820 60.000 0.00 0.00 0.00 5.40
4375 7216 0.909623 CACTCTTAACATCCGGGGGT 59.090 55.000 0.00 0.00 0.00 4.95
4376 7217 2.112998 CACTCTTAACATCCGGGGGTA 58.887 52.381 0.00 0.00 0.00 3.69
4378 7219 3.135895 CACTCTTAACATCCGGGGGTATT 59.864 47.826 0.00 0.00 0.00 1.89
4379 7220 4.345837 CACTCTTAACATCCGGGGGTATTA 59.654 45.833 0.00 0.00 0.00 0.98
4423 7264 0.040058 TGGATTGAACCAGGCTGCAT 59.960 50.000 9.56 0.00 34.77 3.96
4424 7265 0.458669 GGATTGAACCAGGCTGCATG 59.541 55.000 9.56 7.42 0.00 4.06
4425 7266 0.179119 GATTGAACCAGGCTGCATGC 60.179 55.000 11.82 11.82 41.94 4.06
4461 7302 4.008933 GCAGCCTCTGGTCGTGGT 62.009 66.667 0.00 0.00 31.21 4.16
4550 7391 8.816144 TGCAAAGAAATTCATGTTTACAAGAAC 58.184 29.630 3.00 0.00 36.56 3.01
4615 7456 6.350110 GCTAAAAGTAGTGCCCAATGAATTGA 60.350 38.462 4.58 0.00 40.14 2.57
4696 7537 1.886222 GCTGGAATGTGTACCTTGGCA 60.886 52.381 0.00 0.00 0.00 4.92
4756 7597 6.805713 GGAAGTTTCTCATTCCTTTTTCACA 58.194 36.000 0.00 0.00 41.52 3.58
4794 7635 3.686726 AGTAAGAGAAAAAGATGCAGGCG 59.313 43.478 0.00 0.00 0.00 5.52
4809 7650 5.784578 TGCAGGCGAAACTAGATCTTATA 57.215 39.130 0.00 0.00 0.00 0.98
4816 7657 7.451877 AGGCGAAACTAGATCTTATAGGAATGA 59.548 37.037 0.00 0.00 0.00 2.57
4948 7789 6.543465 TGATTTAGGTCGAATTGCATTCTCAT 59.457 34.615 0.00 0.00 37.13 2.90
5287 8129 4.406001 GCAAGTTGCAGGTTACTTAGAC 57.594 45.455 22.90 0.00 44.26 2.59
5334 8176 0.617413 CCAAGACATGACAGCCTCCT 59.383 55.000 0.00 0.00 0.00 3.69
5342 8184 3.838317 ACATGACAGCCTCCTTACTAACA 59.162 43.478 0.00 0.00 0.00 2.41
5493 8335 4.789075 CGACGGTAGGCCACGTGG 62.789 72.222 30.66 30.66 44.24 4.94
5547 8389 2.094026 CAGATGTGGTCGATGGAGTGAA 60.094 50.000 0.00 0.00 0.00 3.18
5821 8665 2.117156 GTAGGCGCACCTCGAGGTA 61.117 63.158 35.80 17.58 46.34 3.08
5844 8688 1.746220 CGAGGAACAGTAGGTGAGGAG 59.254 57.143 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 7.203255 ACAATGTTGAAAGCCTTAAGTCTAC 57.797 36.000 0.97 0.70 0.00 2.59
306 307 9.366216 GGCATACGACATAACATGAAGATTATA 57.634 33.333 0.00 0.00 0.00 0.98
307 308 8.097038 AGGCATACGACATAACATGAAGATTAT 58.903 33.333 0.00 0.00 0.00 1.28
308 309 7.441836 AGGCATACGACATAACATGAAGATTA 58.558 34.615 0.00 0.00 0.00 1.75
309 310 6.291377 AGGCATACGACATAACATGAAGATT 58.709 36.000 0.00 0.00 0.00 2.40
311 312 5.276461 AGGCATACGACATAACATGAAGA 57.724 39.130 0.00 0.00 0.00 2.87
312 313 6.646653 ACATAGGCATACGACATAACATGAAG 59.353 38.462 0.00 0.00 0.00 3.02
477 479 5.221382 ACGGTTGTAACACACTCACTAGATT 60.221 40.000 0.00 0.00 0.00 2.40
486 494 2.282407 GGTTGACGGTTGTAACACACT 58.718 47.619 0.00 0.00 0.00 3.55
612 2031 3.960237 CGTAGCAACGCTTTCCCA 58.040 55.556 0.00 0.00 43.12 4.37
702 2175 1.139256 ACACCATTGTGACACCGTACA 59.861 47.619 3.55 0.00 45.76 2.90
1030 2503 3.565902 GTGCCTGGCAAATACCTCTAATC 59.434 47.826 25.23 1.76 41.47 1.75
1195 2668 6.455360 AGGTATTATGCCAAAACACAGATG 57.545 37.500 1.57 0.00 0.00 2.90
1196 2669 7.346471 ACTAGGTATTATGCCAAAACACAGAT 58.654 34.615 1.57 0.00 0.00 2.90
1198 2671 7.391148 AACTAGGTATTATGCCAAAACACAG 57.609 36.000 1.57 0.00 0.00 3.66
1231 2704 5.919141 GCCATTAATTGAGCTATGCTTTCTG 59.081 40.000 0.00 0.00 39.88 3.02
1411 2884 5.613358 AGAATGACGTCATTTGGTTCTTC 57.387 39.130 36.80 24.93 45.72 2.87
1652 3125 8.425577 ACGACCAGAGAATAATAACAATGAAG 57.574 34.615 0.00 0.00 0.00 3.02
1726 3199 1.067776 GGACGGAGGGAGTATTATGCG 60.068 57.143 0.00 0.00 0.00 4.73
1786 4500 6.350445 CCCTCATTCCCAAATTAGTTGACTTG 60.350 42.308 0.00 0.00 39.87 3.16
2060 4774 9.484806 AAGGCTCCATTACTACTAGTTTTAGTA 57.515 33.333 0.00 0.00 40.55 1.82
2061 4775 7.974730 AGGCTCCATTACTACTAGTTTTAGT 57.025 36.000 0.00 0.73 42.66 2.24
2157 4871 8.153550 TCCTCTTCTAGCTCCATGAATAATTTC 58.846 37.037 0.00 0.00 0.00 2.17
2328 5042 1.344438 TGCATGACTTCCTTCACGACT 59.656 47.619 0.00 0.00 0.00 4.18
2421 5135 6.577427 CGTCTGCAATATCACAATCATCAATG 59.423 38.462 0.00 0.00 0.00 2.82
2462 5176 5.938125 TCTCTGCTTCCAAACAAAGGTATAC 59.062 40.000 0.00 0.00 0.00 1.47
2547 5261 3.862267 TGTCCATTTCAGCAAAACGTTTG 59.138 39.130 15.46 9.92 0.00 2.93
2810 5524 2.755064 TGTGATGCCCCGCCATTG 60.755 61.111 0.00 0.00 0.00 2.82
2905 5619 1.811965 CATTTCATGGTCTGGACGCAA 59.188 47.619 0.00 0.00 0.00 4.85
2917 5631 5.124297 TGTCAGCAGTGTTATCCATTTCATG 59.876 40.000 0.00 0.00 0.00 3.07
3037 5772 4.141914 CCCTTTATCTCTTAGAGCAACCGT 60.142 45.833 4.03 0.00 0.00 4.83
3313 6048 4.569214 AGGGGTCTCCTGTGAAGG 57.431 61.111 0.00 0.00 46.07 3.46
3426 6161 8.561738 ACCTGAATAATACAACGTTTTCTGAT 57.438 30.769 13.41 0.00 0.00 2.90
3679 6474 4.336889 AGCAGTGCAGAAGTTTACAGTA 57.663 40.909 19.20 0.00 0.00 2.74
3840 6635 8.121305 AGAATAAAAAGGCAACATCATACACA 57.879 30.769 0.00 0.00 41.41 3.72
3990 6831 3.055819 GTGATGGTCACCAGTGTGTAGAT 60.056 47.826 1.19 0.00 41.37 1.98
4201 7042 4.271696 TCTGTTTGATGTGACGGAGAAT 57.728 40.909 0.00 0.00 0.00 2.40
4220 7061 6.205658 GCTGAACTTCTTCAAATTACACCTCT 59.794 38.462 0.00 0.00 35.92 3.69
4319 7160 2.165030 GGACTCATGCCCACATTTCTTG 59.835 50.000 0.00 0.00 32.87 3.02
4401 7242 1.887956 GCAGCCTGGTTCAATCCAAGA 60.888 52.381 0.00 0.00 37.01 3.02
4423 7264 2.117858 TTGCTTGGGATGCAGGCA 59.882 55.556 0.00 0.00 41.71 4.75
4424 7265 0.680921 TAGTTGCTTGGGATGCAGGC 60.681 55.000 0.00 0.00 41.71 4.85
4425 7266 1.386533 CTAGTTGCTTGGGATGCAGG 58.613 55.000 0.00 0.00 41.71 4.85
4426 7267 0.737219 GCTAGTTGCTTGGGATGCAG 59.263 55.000 0.00 0.00 41.71 4.41
4427 7268 0.038021 TGCTAGTTGCTTGGGATGCA 59.962 50.000 0.00 0.00 43.37 3.96
4428 7269 0.737219 CTGCTAGTTGCTTGGGATGC 59.263 55.000 0.00 0.00 43.37 3.91
4429 7270 0.737219 GCTGCTAGTTGCTTGGGATG 59.263 55.000 0.00 0.00 43.37 3.51
4430 7271 0.394899 GGCTGCTAGTTGCTTGGGAT 60.395 55.000 0.00 0.00 43.37 3.85
4461 7302 0.966179 TACAACTCTCTTGCGCCAGA 59.034 50.000 11.13 11.13 0.00 3.86
4517 7358 6.790285 ACATGAATTTCTTTGCATTTCACC 57.210 33.333 0.00 0.00 0.00 4.02
4550 7391 0.037046 GTGCATCTTGGCCTTTTGGG 60.037 55.000 3.32 0.00 40.82 4.12
4615 7456 3.070018 GGAAACGCTGCTGCTATCATAT 58.930 45.455 14.03 0.00 36.97 1.78
4696 7537 4.729868 AGTACCAAAGCTTTGATGTTCCT 58.270 39.130 35.25 21.19 40.55 3.36
4756 7597 3.840666 TCTTACTGAGGTCAAGAGGCATT 59.159 43.478 0.00 0.00 0.00 3.56
4809 7650 8.697507 ACAAAAGACTAAACATCTTCATTCCT 57.302 30.769 0.00 0.00 35.31 3.36
4870 7711 6.254804 GTCAAGAACCAACTGCGTTTTAAAAT 59.745 34.615 3.52 0.00 0.00 1.82
4948 7789 8.387354 CGTACTGCAATTATGAGAAATTGTACA 58.613 33.333 10.13 0.00 44.90 2.90
5287 8129 2.028130 ACCTCTCCTCTCGCTGTAATG 58.972 52.381 0.00 0.00 0.00 1.90
5400 8242 2.106857 ACGAGATACACTCCCCTCTAGG 59.893 54.545 0.00 0.00 42.18 3.02
5493 8335 2.100631 CGGTTGGCCTCGACATCAC 61.101 63.158 3.32 0.00 0.00 3.06
5547 8389 1.151810 TCTTGGGTCTTCAGGCCCT 60.152 57.895 17.64 0.00 45.06 5.19
5572 8414 3.272334 CATGCGCGGCTTAGGTCC 61.272 66.667 8.83 0.00 0.00 4.46
5744 8587 1.004277 TGGGTACATCTGGGCTCAAAC 59.996 52.381 0.00 0.00 0.00 2.93
5821 8665 2.299297 CCTCACCTACTGTTCCTCGTTT 59.701 50.000 0.00 0.00 0.00 3.60
5867 8711 4.218417 GTCTTTGTTGCAGGATGTTACCAT 59.782 41.667 0.00 0.00 39.31 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.