Multiple sequence alignment - TraesCS7D01G281000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G281000 chr7D 100.000 2399 0 0 1 2399 274862408 274860010 0.000000e+00 4431
1 TraesCS7D01G281000 chr4D 98.133 1500 18 4 1 1496 270688062 270689555 0.000000e+00 2606
2 TraesCS7D01G281000 chr6D 97.402 1501 26 7 1 1496 153176517 153175025 0.000000e+00 2543
3 TraesCS7D01G281000 chr6D 98.654 1412 12 3 1 1408 69504179 69502771 0.000000e+00 2495
4 TraesCS7D01G281000 chr1D 96.815 1507 33 5 1 1495 480940195 480938692 0.000000e+00 2503
5 TraesCS7D01G281000 chr1D 85.942 1508 188 21 1 1497 452581292 452579798 0.000000e+00 1589
6 TraesCS7D01G281000 chr4A 93.867 1500 84 6 1 1496 521299093 521300588 0.000000e+00 2254
7 TraesCS7D01G281000 chr4A 91.255 1498 124 5 1 1495 429502174 429503667 0.000000e+00 2034
8 TraesCS7D01G281000 chr2D 87.164 1488 175 13 17 1495 10068180 10069660 0.000000e+00 1676
9 TraesCS7D01G281000 chr1A 86.385 1491 188 13 13 1496 544569061 544570543 0.000000e+00 1615
10 TraesCS7D01G281000 chr7B 95.484 310 11 3 1796 2104 261993351 261993658 2.140000e-135 492
11 TraesCS7D01G281000 chr7B 93.851 309 17 2 1796 2104 262025566 262025872 4.670000e-127 464
12 TraesCS7D01G281000 chr7B 97.758 223 5 0 1495 1717 262025348 262025570 3.740000e-103 385
13 TraesCS7D01G281000 chr7B 95.516 223 10 0 1495 1717 261993133 261993355 8.160000e-95 357
14 TraesCS7D01G281000 chr7B 93.919 148 9 0 2249 2396 262025869 262026016 8.630000e-55 224
15 TraesCS7D01G281000 chr7B 90.000 120 11 1 2280 2399 261993722 261993840 1.150000e-33 154
16 TraesCS7D01G281000 chr7B 91.919 99 8 0 2249 2347 261993655 261993753 3.220000e-29 139
17 TraesCS7D01G281000 chr5A 97.727 88 2 0 1712 1799 324692655 324692568 4.130000e-33 152
18 TraesCS7D01G281000 chr5A 94.624 93 5 0 1707 1799 376541912 376542004 6.910000e-31 145
19 TraesCS7D01G281000 chr5D 96.629 89 3 0 1712 1800 49290749 49290837 5.340000e-32 148
20 TraesCS7D01G281000 chr5D 87.395 119 11 4 1696 1811 521497537 521497420 1.500000e-27 134
21 TraesCS7D01G281000 chr4B 94.737 95 3 2 1708 1800 535283821 535283727 1.920000e-31 147
22 TraesCS7D01G281000 chr6B 94.681 94 4 1 1707 1800 65452593 65452501 6.910000e-31 145
23 TraesCS7D01G281000 chr3A 94.624 93 5 0 1707 1799 11617273 11617181 6.910000e-31 145
24 TraesCS7D01G281000 chr3A 94.681 94 4 1 1712 1804 725517076 725517169 6.910000e-31 145
25 TraesCS7D01G281000 chr3A 90.265 113 6 5 1709 1816 492755870 492755982 2.490000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G281000 chr7D 274860010 274862408 2398 True 4431.000000 4431 100.00000 1 2399 1 chr7D.!!$R1 2398
1 TraesCS7D01G281000 chr4D 270688062 270689555 1493 False 2606.000000 2606 98.13300 1 1496 1 chr4D.!!$F1 1495
2 TraesCS7D01G281000 chr6D 153175025 153176517 1492 True 2543.000000 2543 97.40200 1 1496 1 chr6D.!!$R2 1495
3 TraesCS7D01G281000 chr6D 69502771 69504179 1408 True 2495.000000 2495 98.65400 1 1408 1 chr6D.!!$R1 1407
4 TraesCS7D01G281000 chr1D 480938692 480940195 1503 True 2503.000000 2503 96.81500 1 1495 1 chr1D.!!$R2 1494
5 TraesCS7D01G281000 chr1D 452579798 452581292 1494 True 1589.000000 1589 85.94200 1 1497 1 chr1D.!!$R1 1496
6 TraesCS7D01G281000 chr4A 521299093 521300588 1495 False 2254.000000 2254 93.86700 1 1496 1 chr4A.!!$F2 1495
7 TraesCS7D01G281000 chr4A 429502174 429503667 1493 False 2034.000000 2034 91.25500 1 1495 1 chr4A.!!$F1 1494
8 TraesCS7D01G281000 chr2D 10068180 10069660 1480 False 1676.000000 1676 87.16400 17 1495 1 chr2D.!!$F1 1478
9 TraesCS7D01G281000 chr1A 544569061 544570543 1482 False 1615.000000 1615 86.38500 13 1496 1 chr1A.!!$F1 1483
10 TraesCS7D01G281000 chr7B 262025348 262026016 668 False 357.666667 464 95.17600 1495 2396 3 chr7B.!!$F2 901
11 TraesCS7D01G281000 chr7B 261993133 261993840 707 False 285.500000 492 93.22975 1495 2399 4 chr7B.!!$F1 904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 784 0.885196 GCTCGAGAGTTGGACTGTCT 59.115 55.0 18.75 0.0 36.47 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2249 2272 0.04394 ATGACCCTTCCTCTCTGGCT 59.956 55.0 0.0 0.0 35.26 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 77 3.958798 TCTCCTTCCCGTTAATCTACCTG 59.041 47.826 0.00 0.00 0.00 4.00
83 88 2.333695 ATCTACCTGGGCCTCCCTCC 62.334 65.000 4.53 0.00 45.70 4.30
779 784 0.885196 GCTCGAGAGTTGGACTGTCT 59.115 55.000 18.75 0.00 36.47 3.41
780 785 1.402194 GCTCGAGAGTTGGACTGTCTG 60.402 57.143 18.75 0.00 36.47 3.51
781 786 1.883275 CTCGAGAGTTGGACTGTCTGT 59.117 52.381 6.58 0.00 36.47 3.41
1367 1381 1.776662 TCGGCTAGACAGTGGCTAAT 58.223 50.000 7.24 0.00 31.91 1.73
1557 1579 7.390823 TGTAACTATTGTAGGCATGTCTTCAA 58.609 34.615 19.77 19.77 0.00 2.69
1714 1736 6.546428 ACAGTCCTATTGTGCTAATGTAGT 57.454 37.500 0.00 0.00 0.00 2.73
1715 1737 7.655521 ACAGTCCTATTGTGCTAATGTAGTA 57.344 36.000 0.00 0.00 0.00 1.82
1716 1738 7.490000 ACAGTCCTATTGTGCTAATGTAGTAC 58.510 38.462 0.00 0.00 41.11 2.73
1717 1739 7.342284 ACAGTCCTATTGTGCTAATGTAGTACT 59.658 37.037 0.00 0.00 41.28 2.73
1718 1740 7.863375 CAGTCCTATTGTGCTAATGTAGTACTC 59.137 40.741 0.00 0.00 41.28 2.59
1719 1741 7.014422 AGTCCTATTGTGCTAATGTAGTACTCC 59.986 40.741 0.00 0.00 41.28 3.85
1720 1742 6.267014 TCCTATTGTGCTAATGTAGTACTCCC 59.733 42.308 0.00 0.00 41.28 4.30
1721 1743 6.267928 CCTATTGTGCTAATGTAGTACTCCCT 59.732 42.308 0.00 0.00 41.28 4.20
1722 1744 5.593679 TTGTGCTAATGTAGTACTCCCTC 57.406 43.478 0.00 0.00 41.28 4.30
1723 1745 3.958798 TGTGCTAATGTAGTACTCCCTCC 59.041 47.826 0.00 0.00 41.28 4.30
1724 1746 3.004524 GTGCTAATGTAGTACTCCCTCCG 59.995 52.174 0.00 0.00 38.23 4.63
1725 1747 3.220940 GCTAATGTAGTACTCCCTCCGT 58.779 50.000 0.00 0.00 0.00 4.69
1726 1748 4.141413 TGCTAATGTAGTACTCCCTCCGTA 60.141 45.833 0.00 0.00 0.00 4.02
1727 1749 4.823989 GCTAATGTAGTACTCCCTCCGTAA 59.176 45.833 0.00 0.00 0.00 3.18
1728 1750 5.300286 GCTAATGTAGTACTCCCTCCGTAAA 59.700 44.000 0.00 0.00 0.00 2.01
1729 1751 5.588958 AATGTAGTACTCCCTCCGTAAAC 57.411 43.478 0.00 0.00 0.00 2.01
1730 1752 4.307032 TGTAGTACTCCCTCCGTAAACT 57.693 45.455 0.00 0.00 0.00 2.66
1731 1753 5.435686 TGTAGTACTCCCTCCGTAAACTA 57.564 43.478 0.00 0.00 0.00 2.24
1732 1754 5.815581 TGTAGTACTCCCTCCGTAAACTAA 58.184 41.667 0.00 0.00 0.00 2.24
1733 1755 6.426587 TGTAGTACTCCCTCCGTAAACTAAT 58.573 40.000 0.00 0.00 0.00 1.73
1734 1756 7.573710 TGTAGTACTCCCTCCGTAAACTAATA 58.426 38.462 0.00 0.00 0.00 0.98
1735 1757 8.220559 TGTAGTACTCCCTCCGTAAACTAATAT 58.779 37.037 0.00 0.00 0.00 1.28
1736 1758 7.521871 AGTACTCCCTCCGTAAACTAATATG 57.478 40.000 0.00 0.00 0.00 1.78
1737 1759 7.293073 AGTACTCCCTCCGTAAACTAATATGA 58.707 38.462 0.00 0.00 0.00 2.15
1738 1760 6.651975 ACTCCCTCCGTAAACTAATATGAG 57.348 41.667 0.00 0.00 0.00 2.90
1739 1761 6.371278 ACTCCCTCCGTAAACTAATATGAGA 58.629 40.000 0.00 0.00 0.00 3.27
1740 1762 6.490721 ACTCCCTCCGTAAACTAATATGAGAG 59.509 42.308 0.00 0.00 0.00 3.20
1741 1763 5.243283 TCCCTCCGTAAACTAATATGAGAGC 59.757 44.000 0.00 0.00 0.00 4.09
1742 1764 5.154932 CCTCCGTAAACTAATATGAGAGCG 58.845 45.833 0.00 0.00 0.00 5.03
1743 1765 5.278364 CCTCCGTAAACTAATATGAGAGCGT 60.278 44.000 0.00 0.00 0.00 5.07
1744 1766 6.140303 TCCGTAAACTAATATGAGAGCGTT 57.860 37.500 0.00 0.00 0.00 4.84
1745 1767 6.567050 TCCGTAAACTAATATGAGAGCGTTT 58.433 36.000 0.00 0.00 0.00 3.60
1746 1768 7.706159 TCCGTAAACTAATATGAGAGCGTTTA 58.294 34.615 0.00 0.00 0.00 2.01
1747 1769 7.859377 TCCGTAAACTAATATGAGAGCGTTTAG 59.141 37.037 0.00 0.00 30.36 1.85
1748 1770 7.859377 CCGTAAACTAATATGAGAGCGTTTAGA 59.141 37.037 0.00 0.00 30.36 2.10
1749 1771 9.395707 CGTAAACTAATATGAGAGCGTTTAGAT 57.604 33.333 0.00 0.00 30.36 1.98
1752 1774 8.804688 AACTAATATGAGAGCGTTTAGATCAC 57.195 34.615 0.00 0.00 37.82 3.06
1753 1775 8.172352 ACTAATATGAGAGCGTTTAGATCACT 57.828 34.615 0.00 0.00 37.82 3.41
1754 1776 9.286170 ACTAATATGAGAGCGTTTAGATCACTA 57.714 33.333 0.00 0.00 37.82 2.74
1757 1779 9.988815 AATATGAGAGCGTTTAGATCACTATTT 57.011 29.630 0.00 0.00 37.82 1.40
1758 1780 9.988815 ATATGAGAGCGTTTAGATCACTATTTT 57.011 29.630 0.00 0.00 37.82 1.82
1760 1782 8.858003 TGAGAGCGTTTAGATCACTATTTTAG 57.142 34.615 0.00 0.00 37.82 1.85
1761 1783 8.467598 TGAGAGCGTTTAGATCACTATTTTAGT 58.532 33.333 0.00 0.00 37.82 2.24
1776 1798 8.859517 ACTATTTTAGTGATCTAAACGCTCTC 57.140 34.615 0.00 0.00 43.20 3.20
1777 1799 8.467598 ACTATTTTAGTGATCTAAACGCTCTCA 58.532 33.333 0.00 0.00 43.20 3.27
1778 1800 9.469807 CTATTTTAGTGATCTAAACGCTCTCAT 57.530 33.333 0.00 0.00 43.20 2.90
1780 1802 9.988815 ATTTTAGTGATCTAAACGCTCTCATAT 57.011 29.630 0.00 0.00 43.20 1.78
1781 1803 9.817809 TTTTAGTGATCTAAACGCTCTCATATT 57.182 29.630 0.00 0.00 43.20 1.28
1784 1806 8.172352 AGTGATCTAAACGCTCTCATATTAGT 57.828 34.615 0.00 0.00 0.00 2.24
1785 1807 8.634444 AGTGATCTAAACGCTCTCATATTAGTT 58.366 33.333 0.00 0.00 0.00 2.24
1786 1808 9.250624 GTGATCTAAACGCTCTCATATTAGTTT 57.749 33.333 0.00 0.00 36.11 2.66
1789 1811 8.778141 TCTAAACGCTCTCATATTAGTTTACG 57.222 34.615 0.00 0.00 34.29 3.18
1790 1812 6.823678 AAACGCTCTCATATTAGTTTACGG 57.176 37.500 0.00 0.00 31.14 4.02
1791 1813 5.762825 ACGCTCTCATATTAGTTTACGGA 57.237 39.130 0.00 0.00 0.00 4.69
1792 1814 5.759963 ACGCTCTCATATTAGTTTACGGAG 58.240 41.667 0.00 0.00 0.00 4.63
1793 1815 5.154932 CGCTCTCATATTAGTTTACGGAGG 58.845 45.833 0.00 0.00 0.00 4.30
1794 1816 5.471257 GCTCTCATATTAGTTTACGGAGGG 58.529 45.833 0.00 0.00 0.00 4.30
1795 1817 5.243283 GCTCTCATATTAGTTTACGGAGGGA 59.757 44.000 0.00 0.00 0.00 4.20
1796 1818 6.570764 GCTCTCATATTAGTTTACGGAGGGAG 60.571 46.154 0.00 0.00 0.00 4.30
1837 1859 8.306038 TCCCAATAATTGACATTTCTGTTTCAG 58.694 33.333 0.00 0.00 35.14 3.02
1936 1958 7.278646 CCATATATATTGTGGAGGTGACAATCG 59.721 40.741 10.00 0.00 41.94 3.34
1999 2022 2.097142 GCATCCACTGAAGAGCATTCAC 59.903 50.000 0.59 0.00 0.00 3.18
2018 2041 3.496884 TCACTGCGTGTCCTAATTTCAAC 59.503 43.478 8.22 0.00 34.79 3.18
2025 2048 4.390603 CGTGTCCTAATTTCAACGGATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2106 2129 1.651138 CGAGAAGATCGTGACAGTTGC 59.349 52.381 0.00 0.00 46.62 4.17
2107 2130 1.996191 GAGAAGATCGTGACAGTTGCC 59.004 52.381 0.00 0.00 0.00 4.52
2108 2131 1.344438 AGAAGATCGTGACAGTTGCCA 59.656 47.619 0.00 0.00 0.00 4.92
2109 2132 1.461127 GAAGATCGTGACAGTTGCCAC 59.539 52.381 0.00 0.00 0.00 5.01
2110 2133 0.681733 AGATCGTGACAGTTGCCACT 59.318 50.000 0.00 0.00 0.00 4.00
2133 2156 2.681778 CAGAGGGGTCGCTGGAGT 60.682 66.667 0.00 0.00 37.20 3.85
2134 2157 2.120718 AGAGGGGTCGCTGGAGTT 59.879 61.111 0.00 0.00 0.00 3.01
2135 2158 2.266055 GAGGGGTCGCTGGAGTTG 59.734 66.667 0.00 0.00 0.00 3.16
2136 2159 3.959991 GAGGGGTCGCTGGAGTTGC 62.960 68.421 0.00 0.00 0.00 4.17
2158 2181 4.129737 GCACACGGGAGCTCGCTA 62.130 66.667 26.13 0.00 0.00 4.26
2159 2182 2.103143 CACACGGGAGCTCGCTAG 59.897 66.667 26.13 20.03 0.00 3.42
2160 2183 2.045242 ACACGGGAGCTCGCTAGA 60.045 61.111 26.13 0.00 0.00 2.43
2173 2196 3.889520 TCGCTAGAGACAGAGTAGTGA 57.110 47.619 0.00 0.00 32.25 3.41
2174 2197 3.787785 TCGCTAGAGACAGAGTAGTGAG 58.212 50.000 0.00 0.00 31.34 3.51
2175 2198 3.196039 TCGCTAGAGACAGAGTAGTGAGT 59.804 47.826 0.00 0.00 31.34 3.41
2176 2199 3.554324 CGCTAGAGACAGAGTAGTGAGTC 59.446 52.174 0.00 0.00 0.00 3.36
2177 2200 3.554324 GCTAGAGACAGAGTAGTGAGTCG 59.446 52.174 0.00 0.00 36.18 4.18
2178 2201 2.980568 AGAGACAGAGTAGTGAGTCGG 58.019 52.381 0.00 0.00 36.18 4.79
2179 2202 1.399089 GAGACAGAGTAGTGAGTCGGC 59.601 57.143 0.00 0.00 36.18 5.54
2180 2203 0.097325 GACAGAGTAGTGAGTCGGCG 59.903 60.000 0.00 0.00 0.00 6.46
2181 2204 0.605860 ACAGAGTAGTGAGTCGGCGT 60.606 55.000 6.85 0.00 0.00 5.68
2182 2205 0.179187 CAGAGTAGTGAGTCGGCGTG 60.179 60.000 6.85 0.00 0.00 5.34
2183 2206 1.136984 GAGTAGTGAGTCGGCGTGG 59.863 63.158 6.85 0.00 0.00 4.94
2184 2207 2.506438 GTAGTGAGTCGGCGTGGC 60.506 66.667 6.85 0.00 0.00 5.01
2185 2208 2.986979 TAGTGAGTCGGCGTGGCA 60.987 61.111 6.85 0.00 0.00 4.92
2186 2209 2.566570 TAGTGAGTCGGCGTGGCAA 61.567 57.895 6.85 0.00 0.00 4.52
2187 2210 2.758770 TAGTGAGTCGGCGTGGCAAC 62.759 60.000 6.85 0.00 0.00 4.17
2188 2211 3.923864 TGAGTCGGCGTGGCAACT 61.924 61.111 6.85 1.51 37.61 3.16
2189 2212 3.414700 GAGTCGGCGTGGCAACTG 61.415 66.667 6.85 0.00 37.61 3.16
2192 2215 4.927782 TCGGCGTGGCAACTGCTT 62.928 61.111 6.85 0.00 41.70 3.91
2193 2216 3.964875 CGGCGTGGCAACTGCTTT 61.965 61.111 0.00 0.00 41.70 3.51
2194 2217 2.355009 GGCGTGGCAACTGCTTTG 60.355 61.111 1.06 0.00 41.70 2.77
2204 2227 3.498927 CAACTGCTTTGCCAAGGATAG 57.501 47.619 0.00 0.00 28.54 2.08
2205 2228 1.467920 ACTGCTTTGCCAAGGATAGC 58.532 50.000 0.00 0.00 28.54 2.97
2206 2229 0.743097 CTGCTTTGCCAAGGATAGCC 59.257 55.000 0.00 0.00 28.54 3.93
2208 2231 0.743097 GCTTTGCCAAGGATAGCCTG 59.257 55.000 0.00 0.00 46.28 4.85
2209 2232 1.957113 GCTTTGCCAAGGATAGCCTGT 60.957 52.381 0.00 0.00 46.28 4.00
2210 2233 2.019984 CTTTGCCAAGGATAGCCTGTC 58.980 52.381 0.00 0.00 46.28 3.51
2211 2234 0.991146 TTGCCAAGGATAGCCTGTCA 59.009 50.000 0.00 0.00 46.28 3.58
2212 2235 1.216064 TGCCAAGGATAGCCTGTCAT 58.784 50.000 0.00 0.00 46.28 3.06
2213 2236 1.141657 TGCCAAGGATAGCCTGTCATC 59.858 52.381 0.00 0.00 46.28 2.92
2214 2237 1.544314 GCCAAGGATAGCCTGTCATCC 60.544 57.143 0.00 0.00 46.28 3.51
2215 2238 1.270518 CCAAGGATAGCCTGTCATCCG 60.271 57.143 0.00 0.00 46.28 4.18
2216 2239 1.051812 AAGGATAGCCTGTCATCCGG 58.948 55.000 0.00 0.00 46.28 5.14
2217 2240 0.105453 AGGATAGCCTGTCATCCGGT 60.105 55.000 0.00 0.00 44.90 5.28
2218 2241 0.759346 GGATAGCCTGTCATCCGGTT 59.241 55.000 0.00 0.00 31.87 4.44
2219 2242 1.141053 GGATAGCCTGTCATCCGGTTT 59.859 52.381 0.00 0.00 31.87 3.27
2220 2243 2.213499 GATAGCCTGTCATCCGGTTTG 58.787 52.381 0.00 0.36 0.00 2.93
2221 2244 0.392461 TAGCCTGTCATCCGGTTTGC 60.392 55.000 0.00 0.00 0.00 3.68
2222 2245 3.039202 GCCTGTCATCCGGTTTGCG 62.039 63.158 0.00 0.00 0.00 4.85
2223 2246 1.671054 CCTGTCATCCGGTTTGCGT 60.671 57.895 0.00 0.00 0.00 5.24
2224 2247 1.234615 CCTGTCATCCGGTTTGCGTT 61.235 55.000 0.00 0.00 0.00 4.84
2225 2248 1.434555 CTGTCATCCGGTTTGCGTTA 58.565 50.000 0.00 0.00 0.00 3.18
2226 2249 1.393539 CTGTCATCCGGTTTGCGTTAG 59.606 52.381 0.00 0.00 0.00 2.34
2227 2250 1.001068 TGTCATCCGGTTTGCGTTAGA 59.999 47.619 0.00 0.00 0.00 2.10
2228 2251 2.070783 GTCATCCGGTTTGCGTTAGAA 58.929 47.619 0.00 0.00 0.00 2.10
2229 2252 2.093783 GTCATCCGGTTTGCGTTAGAAG 59.906 50.000 0.00 0.00 0.00 2.85
2230 2253 1.396996 CATCCGGTTTGCGTTAGAAGG 59.603 52.381 0.00 0.00 0.00 3.46
2231 2254 0.680618 TCCGGTTTGCGTTAGAAGGA 59.319 50.000 0.00 0.00 0.00 3.36
2232 2255 1.076332 CCGGTTTGCGTTAGAAGGAG 58.924 55.000 0.00 0.00 0.00 3.69
2233 2256 1.337447 CCGGTTTGCGTTAGAAGGAGA 60.337 52.381 0.00 0.00 0.00 3.71
2234 2257 2.618053 CGGTTTGCGTTAGAAGGAGAT 58.382 47.619 0.00 0.00 0.00 2.75
2235 2258 2.348666 CGGTTTGCGTTAGAAGGAGATG 59.651 50.000 0.00 0.00 0.00 2.90
2236 2259 3.335579 GGTTTGCGTTAGAAGGAGATGT 58.664 45.455 0.00 0.00 0.00 3.06
2237 2260 3.751698 GGTTTGCGTTAGAAGGAGATGTT 59.248 43.478 0.00 0.00 0.00 2.71
2238 2261 4.378459 GGTTTGCGTTAGAAGGAGATGTTG 60.378 45.833 0.00 0.00 0.00 3.33
2239 2262 3.953712 TGCGTTAGAAGGAGATGTTGA 57.046 42.857 0.00 0.00 0.00 3.18
2240 2263 4.265904 TGCGTTAGAAGGAGATGTTGAA 57.734 40.909 0.00 0.00 0.00 2.69
2241 2264 4.637276 TGCGTTAGAAGGAGATGTTGAAA 58.363 39.130 0.00 0.00 0.00 2.69
2242 2265 5.060506 TGCGTTAGAAGGAGATGTTGAAAA 58.939 37.500 0.00 0.00 0.00 2.29
2243 2266 5.705441 TGCGTTAGAAGGAGATGTTGAAAAT 59.295 36.000 0.00 0.00 0.00 1.82
2244 2267 6.206634 TGCGTTAGAAGGAGATGTTGAAAATT 59.793 34.615 0.00 0.00 0.00 1.82
2245 2268 6.743172 GCGTTAGAAGGAGATGTTGAAAATTC 59.257 38.462 0.00 0.00 0.00 2.17
2246 2269 7.573096 GCGTTAGAAGGAGATGTTGAAAATTCA 60.573 37.037 0.00 0.00 34.92 2.57
2247 2270 7.746475 CGTTAGAAGGAGATGTTGAAAATTCAC 59.254 37.037 0.00 0.00 36.83 3.18
2248 2271 6.581171 AGAAGGAGATGTTGAAAATTCACC 57.419 37.500 0.00 0.00 36.83 4.02
2249 2272 6.070656 AGAAGGAGATGTTGAAAATTCACCA 58.929 36.000 0.00 0.00 36.83 4.17
2250 2273 5.972107 AGGAGATGTTGAAAATTCACCAG 57.028 39.130 0.09 0.00 33.04 4.00
2251 2274 4.219288 AGGAGATGTTGAAAATTCACCAGC 59.781 41.667 1.30 1.30 36.44 4.85
2298 2321 2.166459 TCATGATGGAGAGAACGACCAC 59.834 50.000 0.00 0.00 36.49 4.16
2303 2326 1.153997 GAGAGAACGACCACGAGCC 60.154 63.158 0.00 0.00 42.66 4.70
2334 2393 2.457366 ATGTTGGAGAGAACGACCAC 57.543 50.000 0.00 0.00 33.20 4.16
2335 2394 1.116308 TGTTGGAGAGAACGACCACA 58.884 50.000 0.00 0.00 33.20 4.17
2378 2437 2.024176 TGGAAGGAACTACAGCAGGA 57.976 50.000 0.00 0.00 38.49 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 88 1.555533 GTGGTAGTTTGAGAGGGGAGG 59.444 57.143 0.00 0.00 0.00 4.30
779 784 2.297315 TCCTGCAACAACAACAACAACA 59.703 40.909 0.00 0.00 0.00 3.33
780 785 2.953020 TCCTGCAACAACAACAACAAC 58.047 42.857 0.00 0.00 0.00 3.32
781 786 3.883830 ATCCTGCAACAACAACAACAA 57.116 38.095 0.00 0.00 0.00 2.83
1367 1381 4.082125 GGGAATTGCAGAGGAGAGAAAAA 58.918 43.478 0.00 0.00 0.00 1.94
1714 1736 7.520798 TCTCATATTAGTTTACGGAGGGAGTA 58.479 38.462 0.00 0.00 0.00 2.59
1715 1737 6.371278 TCTCATATTAGTTTACGGAGGGAGT 58.629 40.000 0.00 0.00 0.00 3.85
1716 1738 6.570764 GCTCTCATATTAGTTTACGGAGGGAG 60.571 46.154 0.00 0.00 0.00 4.30
1717 1739 5.243283 GCTCTCATATTAGTTTACGGAGGGA 59.757 44.000 0.00 0.00 0.00 4.20
1718 1740 5.471257 GCTCTCATATTAGTTTACGGAGGG 58.529 45.833 0.00 0.00 0.00 4.30
1719 1741 5.154932 CGCTCTCATATTAGTTTACGGAGG 58.845 45.833 0.00 0.00 0.00 4.30
1720 1742 5.759963 ACGCTCTCATATTAGTTTACGGAG 58.240 41.667 0.00 0.00 0.00 4.63
1721 1743 5.762825 ACGCTCTCATATTAGTTTACGGA 57.237 39.130 0.00 0.00 0.00 4.69
1722 1744 6.823678 AAACGCTCTCATATTAGTTTACGG 57.176 37.500 0.00 0.00 31.14 4.02
1723 1745 8.778141 TCTAAACGCTCTCATATTAGTTTACG 57.222 34.615 0.00 0.00 34.29 3.18
1726 1748 9.250624 GTGATCTAAACGCTCTCATATTAGTTT 57.749 33.333 0.00 0.00 36.11 2.66
1727 1749 8.634444 AGTGATCTAAACGCTCTCATATTAGTT 58.366 33.333 0.00 0.00 0.00 2.24
1728 1750 8.172352 AGTGATCTAAACGCTCTCATATTAGT 57.828 34.615 0.00 0.00 0.00 2.24
1731 1753 9.988815 AAATAGTGATCTAAACGCTCTCATATT 57.011 29.630 0.00 0.00 0.00 1.28
1732 1754 9.988815 AAAATAGTGATCTAAACGCTCTCATAT 57.011 29.630 0.00 0.00 0.00 1.78
1734 1756 9.469807 CTAAAATAGTGATCTAAACGCTCTCAT 57.530 33.333 0.00 0.00 0.00 2.90
1735 1757 8.467598 ACTAAAATAGTGATCTAAACGCTCTCA 58.532 33.333 0.00 0.00 37.69 3.27
1736 1758 8.859517 ACTAAAATAGTGATCTAAACGCTCTC 57.140 34.615 0.00 0.00 37.69 3.20
1751 1773 8.467598 TGAGAGCGTTTAGATCACTAAAATAGT 58.532 33.333 0.00 0.00 45.97 2.12
1752 1774 8.858003 TGAGAGCGTTTAGATCACTAAAATAG 57.142 34.615 0.00 0.00 45.97 1.73
1754 1776 9.988815 ATATGAGAGCGTTTAGATCACTAAAAT 57.011 29.630 0.00 0.00 45.97 1.82
1755 1777 9.817809 AATATGAGAGCGTTTAGATCACTAAAA 57.182 29.630 0.00 0.00 45.97 1.52
1758 1780 9.286170 ACTAATATGAGAGCGTTTAGATCACTA 57.714 33.333 0.00 0.00 37.82 2.74
1759 1781 8.172352 ACTAATATGAGAGCGTTTAGATCACT 57.828 34.615 0.00 0.00 37.82 3.41
1760 1782 8.804688 AACTAATATGAGAGCGTTTAGATCAC 57.195 34.615 0.00 0.00 37.82 3.06
1763 1785 9.395707 CGTAAACTAATATGAGAGCGTTTAGAT 57.604 33.333 0.00 0.00 30.36 1.98
1764 1786 7.859377 CCGTAAACTAATATGAGAGCGTTTAGA 59.141 37.037 0.00 0.00 30.36 2.10
1765 1787 7.859377 TCCGTAAACTAATATGAGAGCGTTTAG 59.141 37.037 0.00 0.00 30.36 1.85
1766 1788 7.706159 TCCGTAAACTAATATGAGAGCGTTTA 58.294 34.615 0.00 0.00 0.00 2.01
1767 1789 6.567050 TCCGTAAACTAATATGAGAGCGTTT 58.433 36.000 0.00 0.00 0.00 3.60
1768 1790 6.140303 TCCGTAAACTAATATGAGAGCGTT 57.860 37.500 0.00 0.00 0.00 4.84
1769 1791 5.278364 CCTCCGTAAACTAATATGAGAGCGT 60.278 44.000 0.00 0.00 0.00 5.07
1770 1792 5.154932 CCTCCGTAAACTAATATGAGAGCG 58.845 45.833 0.00 0.00 0.00 5.03
1771 1793 5.243283 TCCCTCCGTAAACTAATATGAGAGC 59.757 44.000 0.00 0.00 0.00 4.09
1772 1794 6.490721 ACTCCCTCCGTAAACTAATATGAGAG 59.509 42.308 0.00 0.00 0.00 3.20
1773 1795 6.371278 ACTCCCTCCGTAAACTAATATGAGA 58.629 40.000 0.00 0.00 0.00 3.27
1774 1796 6.651975 ACTCCCTCCGTAAACTAATATGAG 57.348 41.667 0.00 0.00 0.00 2.90
1775 1797 6.491403 GGTACTCCCTCCGTAAACTAATATGA 59.509 42.308 0.00 0.00 0.00 2.15
1776 1798 6.569226 CGGTACTCCCTCCGTAAACTAATATG 60.569 46.154 0.00 0.00 41.58 1.78
1777 1799 5.474876 CGGTACTCCCTCCGTAAACTAATAT 59.525 44.000 0.00 0.00 41.58 1.28
1778 1800 4.821805 CGGTACTCCCTCCGTAAACTAATA 59.178 45.833 0.00 0.00 41.58 0.98
1779 1801 3.633986 CGGTACTCCCTCCGTAAACTAAT 59.366 47.826 0.00 0.00 41.58 1.73
1780 1802 3.016736 CGGTACTCCCTCCGTAAACTAA 58.983 50.000 0.00 0.00 41.58 2.24
1781 1803 2.643551 CGGTACTCCCTCCGTAAACTA 58.356 52.381 0.00 0.00 41.58 2.24
1782 1804 1.467920 CGGTACTCCCTCCGTAAACT 58.532 55.000 0.00 0.00 41.58 2.66
1789 1811 3.055312 AGAAATCAAACGGTACTCCCTCC 60.055 47.826 0.00 0.00 0.00 4.30
1790 1812 4.182339 GAGAAATCAAACGGTACTCCCTC 58.818 47.826 0.00 0.00 0.00 4.30
1791 1813 3.055312 GGAGAAATCAAACGGTACTCCCT 60.055 47.826 0.00 0.00 37.17 4.20
1792 1814 3.268330 GGAGAAATCAAACGGTACTCCC 58.732 50.000 0.00 0.00 37.17 4.30
1793 1815 3.268330 GGGAGAAATCAAACGGTACTCC 58.732 50.000 0.00 0.00 40.85 3.85
1794 1816 3.934068 TGGGAGAAATCAAACGGTACTC 58.066 45.455 0.00 0.00 0.00 2.59
1795 1817 4.360951 TTGGGAGAAATCAAACGGTACT 57.639 40.909 0.00 0.00 0.00 2.73
1796 1818 6.746745 TTATTGGGAGAAATCAAACGGTAC 57.253 37.500 0.00 0.00 0.00 3.34
1889 1911 2.752903 GGGGTTTGCACAGTTACATAGG 59.247 50.000 0.00 0.00 0.00 2.57
1936 1958 0.169009 GCGTGATCTTCAGGTTTGCC 59.831 55.000 0.00 0.00 34.95 4.52
1965 1988 2.365293 AGTGGATGCCTGTTTTTGTTCC 59.635 45.455 0.00 0.00 0.00 3.62
1999 2022 2.159707 CCGTTGAAATTAGGACACGCAG 60.160 50.000 0.00 0.00 0.00 5.18
2007 2030 5.414454 TGAAGGTTGATCCGTTGAAATTAGG 59.586 40.000 0.00 0.00 41.99 2.69
2018 2041 2.359900 CCTCCTTTGAAGGTTGATCCG 58.640 52.381 9.48 0.00 46.54 4.18
2025 2048 0.772124 TCTGGCCCTCCTTTGAAGGT 60.772 55.000 0.00 0.00 46.54 3.50
2116 2139 2.286523 AACTCCAGCGACCCCTCTG 61.287 63.158 0.00 0.00 0.00 3.35
2117 2140 2.120718 AACTCCAGCGACCCCTCT 59.879 61.111 0.00 0.00 0.00 3.69
2118 2141 2.266055 CAACTCCAGCGACCCCTC 59.734 66.667 0.00 0.00 0.00 4.30
2119 2142 4.021925 GCAACTCCAGCGACCCCT 62.022 66.667 0.00 0.00 0.00 4.79
2141 2164 4.129737 TAGCGAGCTCCCGTGTGC 62.130 66.667 8.47 4.40 0.00 4.57
2142 2165 2.103143 CTAGCGAGCTCCCGTGTG 59.897 66.667 8.47 0.00 0.00 3.82
2143 2166 2.045242 TCTAGCGAGCTCCCGTGT 60.045 61.111 8.47 0.00 0.00 4.49
2144 2167 1.820056 TCTCTAGCGAGCTCCCGTG 60.820 63.158 8.47 0.00 37.19 4.94
2145 2168 1.820481 GTCTCTAGCGAGCTCCCGT 60.820 63.158 8.47 0.00 37.19 5.28
2146 2169 1.781025 CTGTCTCTAGCGAGCTCCCG 61.781 65.000 8.47 0.00 37.19 5.14
2147 2170 0.464735 TCTGTCTCTAGCGAGCTCCC 60.465 60.000 8.47 0.00 37.19 4.30
2148 2171 0.944386 CTCTGTCTCTAGCGAGCTCC 59.056 60.000 8.47 0.68 37.19 4.70
2149 2172 1.663695 ACTCTGTCTCTAGCGAGCTC 58.336 55.000 2.73 2.73 37.19 4.09
2150 2173 2.169769 ACTACTCTGTCTCTAGCGAGCT 59.830 50.000 2.25 2.25 37.19 4.09
2151 2174 2.286833 CACTACTCTGTCTCTAGCGAGC 59.713 54.545 0.00 0.00 37.19 5.03
2152 2175 3.787785 TCACTACTCTGTCTCTAGCGAG 58.212 50.000 0.00 0.00 38.67 5.03
2153 2176 3.196039 ACTCACTACTCTGTCTCTAGCGA 59.804 47.826 0.00 0.00 0.00 4.93
2154 2177 3.527533 ACTCACTACTCTGTCTCTAGCG 58.472 50.000 0.00 0.00 0.00 4.26
2155 2178 3.554324 CGACTCACTACTCTGTCTCTAGC 59.446 52.174 0.00 0.00 0.00 3.42
2156 2179 4.116961 CCGACTCACTACTCTGTCTCTAG 58.883 52.174 0.00 0.00 0.00 2.43
2157 2180 3.679361 GCCGACTCACTACTCTGTCTCTA 60.679 52.174 0.00 0.00 0.00 2.43
2158 2181 2.937873 GCCGACTCACTACTCTGTCTCT 60.938 54.545 0.00 0.00 0.00 3.10
2159 2182 1.399089 GCCGACTCACTACTCTGTCTC 59.601 57.143 0.00 0.00 0.00 3.36
2160 2183 1.455248 GCCGACTCACTACTCTGTCT 58.545 55.000 0.00 0.00 0.00 3.41
2161 2184 0.097325 CGCCGACTCACTACTCTGTC 59.903 60.000 0.00 0.00 0.00 3.51
2162 2185 0.605860 ACGCCGACTCACTACTCTGT 60.606 55.000 0.00 0.00 0.00 3.41
2163 2186 0.179187 CACGCCGACTCACTACTCTG 60.179 60.000 0.00 0.00 0.00 3.35
2164 2187 1.306642 CCACGCCGACTCACTACTCT 61.307 60.000 0.00 0.00 0.00 3.24
2165 2188 1.136984 CCACGCCGACTCACTACTC 59.863 63.158 0.00 0.00 0.00 2.59
2166 2189 2.991076 GCCACGCCGACTCACTACT 61.991 63.158 0.00 0.00 0.00 2.57
2167 2190 2.506438 GCCACGCCGACTCACTAC 60.506 66.667 0.00 0.00 0.00 2.73
2168 2191 2.566570 TTGCCACGCCGACTCACTA 61.567 57.895 0.00 0.00 0.00 2.74
2169 2192 3.923864 TTGCCACGCCGACTCACT 61.924 61.111 0.00 0.00 0.00 3.41
2170 2193 3.712881 GTTGCCACGCCGACTCAC 61.713 66.667 0.00 0.00 0.00 3.51
2171 2194 3.923864 AGTTGCCACGCCGACTCA 61.924 61.111 0.00 0.00 0.00 3.41
2172 2195 3.414700 CAGTTGCCACGCCGACTC 61.415 66.667 0.00 0.00 0.00 3.36
2175 2198 4.927782 AAGCAGTTGCCACGCCGA 62.928 61.111 0.00 0.00 43.38 5.54
2176 2199 3.964875 AAAGCAGTTGCCACGCCG 61.965 61.111 0.00 0.00 43.38 6.46
2177 2200 2.355009 CAAAGCAGTTGCCACGCC 60.355 61.111 0.00 0.00 43.38 5.68
2184 2207 2.416431 GCTATCCTTGGCAAAGCAGTTG 60.416 50.000 14.95 0.00 40.50 3.16
2185 2208 1.821136 GCTATCCTTGGCAAAGCAGTT 59.179 47.619 14.95 0.00 33.38 3.16
2186 2209 1.467920 GCTATCCTTGGCAAAGCAGT 58.532 50.000 14.95 0.00 33.38 4.40
2187 2210 0.743097 GGCTATCCTTGGCAAAGCAG 59.257 55.000 19.86 8.04 34.85 4.24
2188 2211 0.332632 AGGCTATCCTTGGCAAAGCA 59.667 50.000 19.86 0.05 40.66 3.91
2189 2212 0.743097 CAGGCTATCCTTGGCAAAGC 59.257 55.000 12.15 12.15 41.93 3.51
2190 2213 2.019984 GACAGGCTATCCTTGGCAAAG 58.980 52.381 0.00 0.00 41.93 2.77
2191 2214 1.354031 TGACAGGCTATCCTTGGCAAA 59.646 47.619 0.00 0.00 41.93 3.68
2192 2215 0.991146 TGACAGGCTATCCTTGGCAA 59.009 50.000 0.00 0.00 41.93 4.52
2193 2216 1.141657 GATGACAGGCTATCCTTGGCA 59.858 52.381 0.00 0.00 41.93 4.92
2194 2217 1.544314 GGATGACAGGCTATCCTTGGC 60.544 57.143 7.42 0.00 41.93 4.52
2195 2218 1.270518 CGGATGACAGGCTATCCTTGG 60.271 57.143 11.92 0.00 41.93 3.61
2196 2219 1.270518 CCGGATGACAGGCTATCCTTG 60.271 57.143 11.92 1.37 41.93 3.61
2197 2220 1.051812 CCGGATGACAGGCTATCCTT 58.948 55.000 11.92 0.00 41.93 3.36
2198 2221 0.105453 ACCGGATGACAGGCTATCCT 60.105 55.000 9.46 0.00 45.66 3.24
2199 2222 0.759346 AACCGGATGACAGGCTATCC 59.241 55.000 9.46 4.92 39.56 2.59
2200 2223 2.213499 CAAACCGGATGACAGGCTATC 58.787 52.381 9.46 0.00 34.79 2.08
2201 2224 1.747206 GCAAACCGGATGACAGGCTAT 60.747 52.381 9.46 0.00 34.79 2.97
2202 2225 0.392461 GCAAACCGGATGACAGGCTA 60.392 55.000 9.46 0.00 34.79 3.93
2203 2226 1.675641 GCAAACCGGATGACAGGCT 60.676 57.895 9.46 0.00 34.79 4.58
2204 2227 2.877691 GCAAACCGGATGACAGGC 59.122 61.111 9.46 0.00 34.79 4.85
2205 2228 1.234615 AACGCAAACCGGATGACAGG 61.235 55.000 9.46 0.27 42.52 4.00
2206 2229 1.393539 CTAACGCAAACCGGATGACAG 59.606 52.381 9.46 4.88 42.52 3.51
2207 2230 1.001068 TCTAACGCAAACCGGATGACA 59.999 47.619 9.46 0.00 42.52 3.58
2208 2231 1.717194 TCTAACGCAAACCGGATGAC 58.283 50.000 9.46 2.60 42.52 3.06
2209 2232 2.343101 CTTCTAACGCAAACCGGATGA 58.657 47.619 9.46 0.00 42.52 2.92
2210 2233 1.396996 CCTTCTAACGCAAACCGGATG 59.603 52.381 9.46 8.22 42.52 3.51
2211 2234 1.276989 TCCTTCTAACGCAAACCGGAT 59.723 47.619 9.46 0.00 42.52 4.18
2212 2235 0.680618 TCCTTCTAACGCAAACCGGA 59.319 50.000 9.46 0.00 42.52 5.14
2213 2236 1.076332 CTCCTTCTAACGCAAACCGG 58.924 55.000 0.00 0.00 42.52 5.28
2214 2237 2.074547 TCTCCTTCTAACGCAAACCG 57.925 50.000 0.00 0.00 44.21 4.44
2215 2238 3.335579 ACATCTCCTTCTAACGCAAACC 58.664 45.455 0.00 0.00 0.00 3.27
2216 2239 4.451096 TCAACATCTCCTTCTAACGCAAAC 59.549 41.667 0.00 0.00 0.00 2.93
2217 2240 4.637276 TCAACATCTCCTTCTAACGCAAA 58.363 39.130 0.00 0.00 0.00 3.68
2218 2241 4.265904 TCAACATCTCCTTCTAACGCAA 57.734 40.909 0.00 0.00 0.00 4.85
2219 2242 3.953712 TCAACATCTCCTTCTAACGCA 57.046 42.857 0.00 0.00 0.00 5.24
2220 2243 5.607119 TTTTCAACATCTCCTTCTAACGC 57.393 39.130 0.00 0.00 0.00 4.84
2221 2244 7.746475 GTGAATTTTCAACATCTCCTTCTAACG 59.254 37.037 0.00 0.00 39.21 3.18
2222 2245 8.023706 GGTGAATTTTCAACATCTCCTTCTAAC 58.976 37.037 3.49 0.00 44.23 2.34
2223 2246 8.110860 GGTGAATTTTCAACATCTCCTTCTAA 57.889 34.615 3.49 0.00 44.23 2.10
2224 2247 7.687941 GGTGAATTTTCAACATCTCCTTCTA 57.312 36.000 3.49 0.00 44.23 2.10
2225 2248 6.581171 GGTGAATTTTCAACATCTCCTTCT 57.419 37.500 3.49 0.00 44.23 2.85
2235 2258 3.569701 TCTCTGGCTGGTGAATTTTCAAC 59.430 43.478 1.31 1.31 45.04 3.18
2236 2259 3.822735 CTCTCTGGCTGGTGAATTTTCAA 59.177 43.478 0.00 0.00 39.21 2.69
2237 2260 3.415212 CTCTCTGGCTGGTGAATTTTCA 58.585 45.455 0.00 0.00 34.20 2.69
2238 2261 2.751806 CCTCTCTGGCTGGTGAATTTTC 59.248 50.000 0.00 0.00 0.00 2.29
2239 2262 2.376518 TCCTCTCTGGCTGGTGAATTTT 59.623 45.455 0.00 0.00 35.26 1.82
2240 2263 1.988107 TCCTCTCTGGCTGGTGAATTT 59.012 47.619 0.00 0.00 35.26 1.82
2241 2264 1.661463 TCCTCTCTGGCTGGTGAATT 58.339 50.000 0.00 0.00 35.26 2.17
2242 2265 1.558756 CTTCCTCTCTGGCTGGTGAAT 59.441 52.381 0.00 0.00 35.26 2.57
2243 2266 0.979665 CTTCCTCTCTGGCTGGTGAA 59.020 55.000 0.00 0.00 35.26 3.18
2244 2267 0.906756 CCTTCCTCTCTGGCTGGTGA 60.907 60.000 0.00 0.00 35.26 4.02
2245 2268 1.601171 CCTTCCTCTCTGGCTGGTG 59.399 63.158 0.00 0.00 35.26 4.17
2246 2269 1.614824 CCCTTCCTCTCTGGCTGGT 60.615 63.158 0.00 0.00 35.26 4.00
2247 2270 1.614824 ACCCTTCCTCTCTGGCTGG 60.615 63.158 0.00 0.00 35.26 4.85
2248 2271 0.906756 TGACCCTTCCTCTCTGGCTG 60.907 60.000 0.00 0.00 35.26 4.85
2249 2272 0.043940 ATGACCCTTCCTCTCTGGCT 59.956 55.000 0.00 0.00 35.26 4.75
2250 2273 1.414550 GTATGACCCTTCCTCTCTGGC 59.585 57.143 0.00 0.00 35.26 4.85
2251 2274 3.039252 AGTATGACCCTTCCTCTCTGG 57.961 52.381 0.00 0.00 37.10 3.86
2298 2321 3.685139 ACATACTTATCATGGGGCTCG 57.315 47.619 0.00 0.00 0.00 5.03
2303 2326 6.425210 TCTCTCCAACATACTTATCATGGG 57.575 41.667 0.00 0.00 0.00 4.00
2359 2418 2.024176 TCCTGCTGTAGTTCCTTCCA 57.976 50.000 0.00 0.00 0.00 3.53
2369 2428 2.426522 GCAGTTGTCATTCCTGCTGTA 58.573 47.619 10.72 0.00 46.23 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.