AutoCloner

Multiple sequence alignment - TraesCS7D01G280600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G280600	chr7D	100.000	2453	0	0	1	2453	274259897	274262349	0.000000e+00	4530.0
1	TraesCS7D01G280600	chr7D	97.347	754	20	0	1	754	628183033	628182280	0.000000e+00	1282.0
2	TraesCS7D01G280600	chr7D	85.000	580	53	15	1905	2453	422574460	422575036	2.130000e-155	558.0
3	TraesCS7D01G280600	chr7D	95.833	48	2	0	1905	1952	274261753	274261800	7.270000e-11	78.7
4	TraesCS7D01G280600	chr7D	95.833	48	2	0	1857	1904	274261801	274261848	7.270000e-11	78.7
5	TraesCS7D01G280600	chr7A	93.362	1175	28	19	755	1904	307565932	307567081	0.000000e+00	1692.0
6	TraesCS7D01G280600	chr7A	87.911	761	61	18	3	754	719985339	719986077	0.000000e+00	867.0
7	TraesCS7D01G280600	chr7A	86.139	101	14	0	1804	1904	632515495	632515395	2.580000e-20	110.0
8	TraesCS7D01G280600	chr7B	92.336	1083	31	19	755	1808	263670476	263669417	0.000000e+00	1493.0
9	TraesCS7D01G280600	chr7B	77.305	423	54	17	1917	2314	212470866	212470461	6.870000e-51	211.0
10	TraesCS7D01G280600	chr7B	85.321	109	10	5	1801	1907	212470933	212470829	9.280000e-20	108.0
11	TraesCS7D01G280600	chr6D	96.950	754	23	0	1	754	394218424	394219177	0.000000e+00	1266.0
12	TraesCS7D01G280600	chr6D	94.960	754	23	4	1	754	305275483	305276221	0.000000e+00	1168.0
13	TraesCS7D01G280600	chr6D	87.500	496	35	12	1984	2453	137121577	137122071	4.610000e-152	547.0
14	TraesCS7D01G280600	chr3D	96.950	754	23	0	1	754	106680704	106681457	0.000000e+00	1266.0
15	TraesCS7D01G280600	chr3D	86.141	469	48	10	1908	2361	30764664	30764198	7.880000e-135	490.0
16	TraesCS7D01G280600	chr3A	87.391	571	46	8	1909	2453	735609607	735610177	1.240000e-177	632.0
17	TraesCS7D01G280600	chr3A	85.442	577	54	16	1905	2453	501568397	501567823	7.610000e-160	573.0
18	TraesCS7D01G280600	chr5D	86.014	572	52	11	1908	2453	444886744	444886175	2.720000e-164	588.0
19	TraesCS7D01G280600	chr4D	85.366	574	56	11	1908	2453	465442155	465441582	9.840000e-159	569.0
20	TraesCS7D01G280600	chr4D	87.097	496	37	11	1984	2453	32770630	32771124	9.980000e-149	536.0
21	TraesCS7D01G280600	chr4D	86.318	497	39	14	1984	2453	431621816	431621322	4.680000e-142	514.0
22	TraesCS7D01G280600	chr6B	90.330	424	31	3	339	754	643865121	643864700	4.610000e-152	547.0
23	TraesCS7D01G280600	chr6B	88.184	347	23	5	1	347	643867241	643866913	4.910000e-107	398.0
24	TraesCS7D01G280600	chr2B	86.034	537	44	14	1947	2453	597227314	597226779	4.610000e-152	547.0
25	TraesCS7D01G280600	chr2A	84.832	567	51	13	1916	2453	13399203	13399763	2.780000e-149	538.0
26	TraesCS7D01G280600	chr2A	86.186	485	41	11	1984	2442	542754879	542754395	3.640000e-138	501.0
27	TraesCS7D01G280600	chr4B	86.373	477	55	6	1984	2452	307581591	307581117	1.680000e-141	512.0
28	TraesCS7D01G280600	chr5A	82.753	574	69	13	1908	2453	475322759	475322188	3.670000e-133	484.0
29	TraesCS7D01G280600	chr5A	87.500	96	12	0	1809	1904	461070910	461070815	7.170000e-21	111.0
30	TraesCS7D01G280600	chr2D	82.373	573	53	13	1909	2453	644551991	644552543	2.880000e-124	455.0
31	TraesCS7D01G280600	chr1A	82.065	552	56	16	238	756	22889217	22888676	4.850000e-117	431.0
32	TraesCS7D01G280600	chr1D	87.578	161	18	1	1905	2063	211802493	211802653	4.170000e-43	185.0
33	TraesCS7D01G280600	chrUn	90.909	88	7	1	2	89	28852761	28852675	1.540000e-22	117.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G280600	chr7D	274259897	274262349	2452	False	1562.466667	4530	97.222	1	2453	3	chr7D.!!$F2	2452
1	TraesCS7D01G280600	chr7D	628182280	628183033	753	True	1282.000000	1282	97.347	1	754	1	chr7D.!!$R1	753
2	TraesCS7D01G280600	chr7D	422574460	422575036	576	False	558.000000	558	85.000	1905	2453	1	chr7D.!!$F1	548
3	TraesCS7D01G280600	chr7A	307565932	307567081	1149	False	1692.000000	1692	93.362	755	1904	1	chr7A.!!$F1	1149
4	TraesCS7D01G280600	chr7A	719985339	719986077	738	False	867.000000	867	87.911	3	754	1	chr7A.!!$F2	751
5	TraesCS7D01G280600	chr7B	263669417	263670476	1059	True	1493.000000	1493	92.336	755	1808	1	chr7B.!!$R1	1053
6	TraesCS7D01G280600	chr6D	394218424	394219177	753	False	1266.000000	1266	96.950	1	754	1	chr6D.!!$F3	753
7	TraesCS7D01G280600	chr6D	305275483	305276221	738	False	1168.000000	1168	94.960	1	754	1	chr6D.!!$F2	753
8	TraesCS7D01G280600	chr3D	106680704	106681457	753	False	1266.000000	1266	96.950	1	754	1	chr3D.!!$F1	753
9	TraesCS7D01G280600	chr3A	735609607	735610177	570	False	632.000000	632	87.391	1909	2453	1	chr3A.!!$F1	544
10	TraesCS7D01G280600	chr3A	501567823	501568397	574	True	573.000000	573	85.442	1905	2453	1	chr3A.!!$R1	548
11	TraesCS7D01G280600	chr5D	444886175	444886744	569	True	588.000000	588	86.014	1908	2453	1	chr5D.!!$R1	545
12	TraesCS7D01G280600	chr4D	465441582	465442155	573	True	569.000000	569	85.366	1908	2453	1	chr4D.!!$R2	545
13	TraesCS7D01G280600	chr6B	643864700	643867241	2541	True	472.500000	547	89.257	1	754	2	chr6B.!!$R1	753
14	TraesCS7D01G280600	chr2B	597226779	597227314	535	True	547.000000	547	86.034	1947	2453	1	chr2B.!!$R1	506
15	TraesCS7D01G280600	chr2A	13399203	13399763	560	False	538.000000	538	84.832	1916	2453	1	chr2A.!!$F1	537
16	TraesCS7D01G280600	chr5A	475322188	475322759	571	True	484.000000	484	82.753	1908	2453	1	chr5A.!!$R2	545
17	TraesCS7D01G280600	chr2D	644551991	644552543	552	False	455.000000	455	82.373	1909	2453	1	chr2D.!!$F1	544
18	TraesCS7D01G280600	chr1A	22888676	22889217	541	True	431.000000	431	82.065	238	756	1	chr1A.!!$R1	518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
482	2305	0.251916	CACGGGCATGGGAGACTTTA	59.748	55.0	0.0	0.0	0.0	1.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2031	3901	0.240145	CTCACACAATGCAGCTGGTG	59.76	55.0	17.12	16.69	37.29	4.17	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
96	97	3.740321	GCTATGATGCTAAGCTGACTCAC	59.260	47.826	0.00	0.00	33.40	3.51
137	138	4.151689	GCAGCGTACTTTCACTTCACATAA	59.848	41.667	0.00	0.00	0.00	1.90
244	246	1.736586	CCGCTAGCCTTGATCGAGT	59.263	57.895	9.66	0.00	0.00	4.18
298	312	0.595567	GACACGTTGAGCCACACGTA	60.596	55.000	4.66	0.00	35.68	3.57
439	2258	2.980568	AGACGTGAAACCACAAGAACA	58.019	42.857	0.00	0.00	34.30	3.18
482	2305	0.251916	CACGGGCATGGGAGACTTTA	59.748	55.000	0.00	0.00	0.00	1.85
575	2410	4.828925	GCCGCTGAGTCAGGGAGC	62.829	72.222	32.44	27.86	45.41	4.70
591	2426	2.526432	GGAGCGATCCTAGTAATCCCA	58.474	52.381	13.71	0.00	0.00	4.37
672	2507	1.689233	CCGGGATCCCAGAGGTCAA	60.689	63.158	30.42	0.00	35.37	3.18
694	2529	7.177744	GTCAAGGTACCAATTTCAGGGATTAAA	59.822	37.037	15.94	0.00	0.00	1.52
781	2616	4.439700	GGAATCGACTTAAGGATGACGTGA	60.440	45.833	7.53	0.00	0.00	4.35
872	2708	2.197465	ACTCCTCATCCCCTTACAACC	58.803	52.381	0.00	0.00	0.00	3.77
879	2715	1.659022	TCCCCTTACAACCGGAATCA	58.341	50.000	9.46	0.00	0.00	2.57
881	2717	1.557832	CCCCTTACAACCGGAATCAGA	59.442	52.381	9.46	0.00	0.00	3.27
909	2756	0.545646	GAGAGAGGCTTTGGCTGGAT	59.454	55.000	0.00	0.00	38.98	3.41
1266	3123	4.082523	GCGCTGCACTCCCAGGTA	62.083	66.667	0.00	0.00	33.44	3.08
1267	3124	2.125512	CGCTGCACTCCCAGGTAC	60.126	66.667	0.00	0.00	33.44	3.34
1268	3125	2.942796	CGCTGCACTCCCAGGTACA	61.943	63.158	0.00	0.00	33.44	2.90
1425	3282	1.450312	CCGCCTCGCCAAGAAGAAT	60.450	57.895	0.00	0.00	0.00	2.40
1456	3313	2.168521	CTCGGATTCCTTGCTTGACCTA	59.831	50.000	0.30	0.00	0.00	3.08
1625	3482	9.977397	TGGAGACAGCACTGAGTTCAGTTAAAG	62.977	44.444	11.91	2.97	44.96	1.85
1713	3570	6.486993	CCTCAGCGGTAGAGTATATATATGCA	59.513	42.308	12.61	0.00	0.00	3.96
1733	3590	6.135290	TGCACAATGCTACTTGATAAATCC	57.865	37.500	2.02	0.00	45.31	3.01
1734	3591	5.067674	TGCACAATGCTACTTGATAAATCCC	59.932	40.000	2.02	0.00	45.31	3.85
1735	3592	5.751680	CACAATGCTACTTGATAAATCCCG	58.248	41.667	2.02	0.00	0.00	5.14
1743	3607	4.181578	ACTTGATAAATCCCGTTGTCTCG	58.818	43.478	0.00	0.00	0.00	4.04
1755	3619	3.805971	CCGTTGTCTCGTTACTCCTTTTT	59.194	43.478	0.00	0.00	0.00	1.94
1756	3620	4.984161	CCGTTGTCTCGTTACTCCTTTTTA	59.016	41.667	0.00	0.00	0.00	1.52
1757	3621	5.636543	CCGTTGTCTCGTTACTCCTTTTTAT	59.363	40.000	0.00	0.00	0.00	1.40
1758	3622	6.808212	CCGTTGTCTCGTTACTCCTTTTTATA	59.192	38.462	0.00	0.00	0.00	0.98
1759	3623	7.490402	CCGTTGTCTCGTTACTCCTTTTTATAT	59.510	37.037	0.00	0.00	0.00	0.86
1760	3624	9.507280	CGTTGTCTCGTTACTCCTTTTTATATA	57.493	33.333	0.00	0.00	0.00	0.86
1763	3627	9.793252	TGTCTCGTTACTCCTTTTTATATACAC	57.207	33.333	0.00	0.00	0.00	2.90
1779	3643	0.680280	ACACTAGATCCGTCACGCCT	60.680	55.000	0.00	0.00	0.00	5.52
1782	3646	0.456221	CTAGATCCGTCACGCCTTGT	59.544	55.000	0.00	0.00	0.00	3.16
1821	3685	7.431084	CCGTTTAAATCTTCCCAAATGATAACG	59.569	37.037	0.00	0.00	33.34	3.18
1823	3687	4.918810	AATCTTCCCAAATGATAACGCC	57.081	40.909	0.00	0.00	0.00	5.68
1824	3688	2.650322	TCTTCCCAAATGATAACGCCC	58.350	47.619	0.00	0.00	0.00	6.13
1825	3689	2.025793	TCTTCCCAAATGATAACGCCCA	60.026	45.455	0.00	0.00	0.00	5.36
1857	3721	0.661187	GTTTGCACATCACCTGCACG	60.661	55.000	0.00	0.00	44.32	5.34
1868	3732	1.195448	CACCTGCACGTCTTGATTCAC	59.805	52.381	0.00	0.00	0.00	3.18
1872	3736	2.729360	CTGCACGTCTTGATTCACGTTA	59.271	45.455	0.00	0.00	46.93	3.18
1876	3740	4.781528	GCACGTCTTGATTCACGTTAATTC	59.218	41.667	0.00	0.00	46.93	2.17
1878	3742	6.009474	CACGTCTTGATTCACGTTAATTCTG	58.991	40.000	0.00	0.00	46.93	3.02
1883	3747	9.872757	GTCTTGATTCACGTTAATTCTGTTTTA	57.127	29.630	0.00	0.00	0.00	1.52
1913	3777	9.103861	GAATCCTAAAGAAATCTCGTCTTGATT	57.896	33.333	0.00	0.00	35.50	2.57
1931	3797	9.872757	GTCTTGATTCACGTTAATTCTGTTTTA	57.127	29.630	0.00	0.00	0.00	1.52
1965	3831	9.323985	CCTAAAAGAATCTGTTAGAATCTGAGG	57.676	37.037	19.16	1.53	34.86	3.86
2062	3933	4.151689	GCATTGTGTGAGCGAACTAGTTTA	59.848	41.667	10.02	0.00	0.00	2.01
2067	3938	2.281762	GTGAGCGAACTAGTTTATGCCG	59.718	50.000	18.89	14.29	0.00	5.69
2079	3950	0.809636	TTATGCCGACACAGCCATCG	60.810	55.000	0.00	0.00	38.08	3.84
2089	3960	1.050988	ACAGCCATCGCCTAGTCCAT	61.051	55.000	0.00	0.00	34.57	3.41
2314	4210	6.398234	AACACACATGGCAACTATTGTTTA	57.602	33.333	0.00	0.00	33.52	2.01
2345	4241	4.755123	GTGGCAAGTAGTTAATCACACACT	59.245	41.667	0.00	0.00	0.00	3.55
2347	4243	4.755123	GGCAAGTAGTTAATCACACACTGT	59.245	41.667	0.00	0.00	0.00	3.55
2363	4259	7.041440	TCACACACTGTAACTATGGTTTGATTG	60.041	37.037	0.00	0.00	36.92	2.67
2365	4261	5.106712	ACACTGTAACTATGGTTTGATTGCG	60.107	40.000	0.00	0.00	36.92	4.85
2399	4295	7.834181	ACTACCATAAATTAGACATGGCAACTT	59.166	33.333	0.00	0.00	42.54	2.66
2442	4341	5.309323	TGCCATGCTTTTACAACTACATC	57.691	39.130	0.00	0.00	0.00	3.06

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
51	52	1.310933	TGTTCGCCGGAGAGTAGTCC	61.311	60.000	5.05	0.00	0.00	3.85
96	97	1.813753	CCTAACCCACCGCATCGTG	60.814	63.158	0.00	0.00	0.00	4.35
244	246	0.948678	GCCAAGTTTCGCCAGTACAA	59.051	50.000	0.00	0.00	0.00	2.41
393	2212	3.832171	GCTCGTCGCGTGCTGAAG	61.832	66.667	5.77	0.00	42.00	3.02
575	2410	1.202582	CGGCTGGGATTACTAGGATCG	59.797	57.143	0.00	0.00	0.00	3.69
591	2426	1.906574	TGACAAAAGTCTATCCCGGCT	59.093	47.619	0.00	0.00	0.00	5.52
616	2451	3.764237	TCCACCCTAGAACTGTTTGTC	57.236	47.619	0.00	0.00	0.00	3.18
625	2460	1.668826	ACCTTGCATCCACCCTAGAA	58.331	50.000	0.00	0.00	0.00	2.10
672	2507	6.152154	CGTTTTAATCCCTGAAATTGGTACCT	59.848	38.462	14.36	0.00	0.00	3.08
694	2529	0.389426	CGGAATCGAACCCTCACGTT	60.389	55.000	6.46	0.00	39.00	3.99
781	2616	4.829492	CCTTGGTCTTTTCCATTTCTCTGT	59.171	41.667	0.00	0.00	37.33	3.41
872	2708	4.060900	CTCTCTCTCTCTCTCTGATTCCG	58.939	52.174	0.00	0.00	0.00	4.30
879	2715	2.769209	AGCCTCTCTCTCTCTCTCTCT	58.231	52.381	0.00	0.00	0.00	3.10
881	2717	3.624777	CAAAGCCTCTCTCTCTCTCTCT	58.375	50.000	0.00	0.00	0.00	3.10
909	2756	2.767445	CGATGACGGACCGCTGGTA	61.767	63.158	15.39	0.00	35.25	3.25
1264	3121	5.303259	AGGCTAGTAGGTAGGTACTGTAC	57.697	47.826	9.46	9.46	41.52	2.90
1265	3122	4.349342	GGAGGCTAGTAGGTAGGTACTGTA	59.651	50.000	0.00	0.00	41.52	2.74
1266	3123	3.138098	GGAGGCTAGTAGGTAGGTACTGT	59.862	52.174	0.00	0.00	41.52	3.55
1267	3124	3.498301	GGGAGGCTAGTAGGTAGGTACTG	60.498	56.522	0.00	0.00	41.52	2.74
1268	3125	2.715880	GGGAGGCTAGTAGGTAGGTACT	59.284	54.545	0.00	0.00	46.37	2.73
1425	3282	1.115467	GGAATCCGAGCTTCTCTCCA	58.885	55.000	0.00	0.00	38.62	3.86
1561	3418	8.206126	AGAGAAGAGAAGAGAGGAAGAAAAAT	57.794	34.615	0.00	0.00	0.00	1.82
1571	3428	7.108847	AGAGAAGAGAAGAGAAGAGAAGAGAG	58.891	42.308	0.00	0.00	0.00	3.20
1572	3429	7.020827	AGAGAAGAGAAGAGAAGAGAAGAGA	57.979	40.000	0.00	0.00	0.00	3.10
1573	3430	7.175641	ACAAGAGAAGAGAAGAGAAGAGAAGAG	59.824	40.741	0.00	0.00	0.00	2.85
1574	3431	7.004086	ACAAGAGAAGAGAAGAGAAGAGAAGA	58.996	38.462	0.00	0.00	0.00	2.87
1575	3432	7.086376	CACAAGAGAAGAGAAGAGAAGAGAAG	58.914	42.308	0.00	0.00	0.00	2.85
1576	3433	6.015519	CCACAAGAGAAGAGAAGAGAAGAGAA	60.016	42.308	0.00	0.00	0.00	2.87
1577	3434	5.476599	CCACAAGAGAAGAGAAGAGAAGAGA	59.523	44.000	0.00	0.00	0.00	3.10
1578	3435	5.476599	TCCACAAGAGAAGAGAAGAGAAGAG	59.523	44.000	0.00	0.00	0.00	2.85
1625	3482	3.476552	TCCACATGGAACTGAACTGAAC	58.523	45.455	0.00	0.00	42.18	3.18
1626	3483	3.855255	TCCACATGGAACTGAACTGAA	57.145	42.857	0.00	0.00	42.18	3.02
1713	3570	5.437060	ACGGGATTTATCAAGTAGCATTGT	58.563	37.500	0.00	0.00	0.00	2.71
1724	3581	3.880047	ACGAGACAACGGGATTTATCA	57.120	42.857	0.00	0.00	37.61	2.15
1732	3589	0.886563	AGGAGTAACGAGACAACGGG	59.113	55.000	0.00	0.00	37.61	5.28
1733	3590	2.719426	AAGGAGTAACGAGACAACGG	57.281	50.000	0.00	0.00	37.61	4.44
1734	3591	6.701432	ATAAAAAGGAGTAACGAGACAACG	57.299	37.500	0.00	0.00	39.31	4.10
1755	3619	4.633126	GGCGTGACGGATCTAGTGTATATA	59.367	45.833	7.25	0.00	0.00	0.86
1756	3620	3.439476	GGCGTGACGGATCTAGTGTATAT	59.561	47.826	7.25	0.00	0.00	0.86
1757	3621	2.810274	GGCGTGACGGATCTAGTGTATA	59.190	50.000	7.25	0.00	0.00	1.47
1758	3622	1.607628	GGCGTGACGGATCTAGTGTAT	59.392	52.381	7.25	0.00	0.00	2.29
1759	3623	1.019673	GGCGTGACGGATCTAGTGTA	58.980	55.000	7.25	0.00	0.00	2.90
1760	3624	0.680280	AGGCGTGACGGATCTAGTGT	60.680	55.000	7.25	0.00	0.00	3.55
1761	3625	0.456221	AAGGCGTGACGGATCTAGTG	59.544	55.000	7.25	0.00	0.00	2.74
1762	3626	0.456221	CAAGGCGTGACGGATCTAGT	59.544	55.000	7.25	0.00	0.00	2.57
1763	3627	0.456221	ACAAGGCGTGACGGATCTAG	59.544	55.000	7.25	0.00	0.00	2.43
1764	3628	0.454600	GACAAGGCGTGACGGATCTA	59.545	55.000	7.25	0.00	0.00	1.98
1765	3629	1.215647	GACAAGGCGTGACGGATCT	59.784	57.895	7.25	0.00	0.00	2.75
1779	3643	3.525619	CGGGATTTCTCACGGACAA	57.474	52.632	0.00	0.00	44.72	3.18
1821	3685	1.748879	ACATGCCATACGTGTGGGC	60.749	57.895	29.62	23.01	46.95	5.36
1831	3695	1.066716	GGTGATGTGCAAACATGCCAT	60.067	47.619	0.00	1.97	0.00	4.40
1849	3713	1.512926	GTGAATCAAGACGTGCAGGT	58.487	50.000	12.68	12.68	0.00	4.00
1852	3716	3.282557	ACGTGAATCAAGACGTGCA	57.717	47.368	2.68	0.00	46.60	4.57
1857	3721	8.782533	AAAACAGAATTAACGTGAATCAAGAC	57.217	30.769	2.68	0.00	0.00	3.01
1868	3732	7.515643	AGGATTCGTGTAAAACAGAATTAACG	58.484	34.615	0.00	0.00	34.42	3.18
1872	3736	9.280174	TCTTTAGGATTCGTGTAAAACAGAATT	57.720	29.630	6.34	0.00	34.42	2.17
1876	3740	9.543018	GATTTCTTTAGGATTCGTGTAAAACAG	57.457	33.333	0.00	0.00	0.00	3.16
1878	3742	9.756461	GAGATTTCTTTAGGATTCGTGTAAAAC	57.244	33.333	0.00	0.00	0.00	2.43
1883	3747	5.721232	ACGAGATTTCTTTAGGATTCGTGT	58.279	37.500	0.00	0.00	38.44	4.49
1913	3777	6.825284	TCGTGTAAAACAGAATTAACGTGA	57.175	33.333	0.00	0.00	0.00	4.35
1931	3797	8.311836	TCTAACAGATTCTTTTAGGATTCGTGT	58.688	33.333	16.01	0.00	0.00	4.49
1965	3831	2.173669	CGATGATGCCCACGTGACC	61.174	63.158	19.30	7.83	0.00	4.02
2031	3901	0.240145	CTCACACAATGCAGCTGGTG	59.760	55.000	17.12	16.69	37.29	4.17
2032	3902	1.521450	GCTCACACAATGCAGCTGGT	61.521	55.000	17.12	1.06	32.11	4.00
2041	3911	5.163854	GCATAAACTAGTTCGCTCACACAAT	60.164	40.000	8.95	0.00	0.00	2.71
2067	3938	0.528684	GACTAGGCGATGGCTGTGTC	60.529	60.000	2.81	7.65	39.30	3.67
2079	3950	3.264897	CACGCGCATGGACTAGGC	61.265	66.667	5.73	0.00	0.00	3.93
2106	3994	2.414029	CCATCCAACAACGTACATGTGC	60.414	50.000	9.11	6.17	0.00	4.57
2110	3998	2.192664	TGCCATCCAACAACGTACAT	57.807	45.000	0.00	0.00	0.00	2.29
2152	4046	8.390354	CGAATCATAGTTGTCATGTGTGTTTAT	58.610	33.333	0.00	0.00	0.00	1.40
2195	4089	2.784596	CCACATACGCGCAACTGG	59.215	61.111	5.73	2.00	0.00	4.00
2276	4171	2.551032	GTGTGTTTACCTACTTGCCACC	59.449	50.000	0.00	0.00	0.00	4.61
2284	4179	3.818773	AGTTGCCATGTGTGTTTACCTAC	59.181	43.478	0.00	0.00	0.00	3.18
2345	4241	3.181515	CGCGCAATCAAACCATAGTTACA	60.182	43.478	8.75	0.00	34.19	2.41
2347	4243	2.223157	GCGCGCAATCAAACCATAGTTA	60.223	45.455	29.10	0.00	34.19	2.24
2363	4259	1.415288	TTATGGTAGTTGTCGCGCGC	61.415	55.000	27.95	23.91	0.00	6.86
2365	4261	3.668596	AATTTATGGTAGTTGTCGCGC	57.331	42.857	0.00	0.00	0.00	6.86
2399	4295	6.103330	GGCAACTCTCTTTGTTTTGGTTAAA	58.897	36.000	0.00	0.00	0.00	1.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.