Multiple sequence alignment - TraesCS7D01G280300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G280300 chr7D 100.000 4799 0 0 1 4799 272602810 272598012 0.000000e+00 8863.0
1 TraesCS7D01G280300 chr7D 100.000 32 0 0 577 608 593923768 593923737 5.190000e-05 60.2
2 TraesCS7D01G280300 chr7D 100.000 31 0 0 578 608 194797609 194797579 1.870000e-04 58.4
3 TraesCS7D01G280300 chr7B 95.910 4059 93 27 428 4463 265429694 265433702 0.000000e+00 6508.0
4 TraesCS7D01G280300 chr7B 97.468 158 4 0 286 443 265429521 265429678 2.200000e-68 270.0
5 TraesCS7D01G280300 chr7B 91.960 199 5 4 4548 4736 265465264 265465461 7.920000e-68 268.0
6 TraesCS7D01G280300 chr7B 96.739 92 3 0 4455 4546 265433726 265433817 2.310000e-33 154.0
7 TraesCS7D01G280300 chr7A 95.689 4083 88 22 640 4692 306348637 306344613 0.000000e+00 6484.0
8 TraesCS7D01G280300 chr7A 92.022 539 23 10 94 618 306349419 306348887 0.000000e+00 739.0
9 TraesCS7D01G280300 chr7A 100.000 31 0 0 578 608 278458215 278458245 1.870000e-04 58.4
10 TraesCS7D01G280300 chr4D 85.333 75 11 0 1346 1420 13200255 13200181 1.430000e-10 78.7
11 TraesCS7D01G280300 chr4D 100.000 29 0 0 48 76 356310205 356310233 2.000000e-03 54.7
12 TraesCS7D01G280300 chr4B 85.333 75 11 0 1346 1420 23822195 23822121 1.430000e-10 78.7
13 TraesCS7D01G280300 chr4A 84.615 78 12 0 1343 1420 589108502 589108579 1.430000e-10 78.7
14 TraesCS7D01G280300 chr2B 84.615 78 12 0 1343 1420 17040286 17040363 1.430000e-10 78.7
15 TraesCS7D01G280300 chr6D 97.222 36 0 1 577 611 65628662 65628627 5.190000e-05 60.2
16 TraesCS7D01G280300 chr6D 100.000 31 0 0 578 608 199706531 199706561 1.870000e-04 58.4
17 TraesCS7D01G280300 chr6B 100.000 31 0 0 577 607 123700405 123700375 1.870000e-04 58.4
18 TraesCS7D01G280300 chr6A 100.000 31 0 0 578 608 252862164 252862194 1.870000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G280300 chr7D 272598012 272602810 4798 True 8863.000000 8863 100.000000 1 4799 1 chr7D.!!$R2 4798
1 TraesCS7D01G280300 chr7B 265429521 265433817 4296 False 2310.666667 6508 96.705667 286 4546 3 chr7B.!!$F2 4260
2 TraesCS7D01G280300 chr7A 306344613 306349419 4806 True 3611.500000 6484 93.855500 94 4692 2 chr7A.!!$R1 4598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.035820 AAAATTGGTCGGGCTAGCGA 60.036 50.0 9.00 0.00 0.00 4.93 F
69 70 0.037232 GGCTAGCGAGAACCACTGTT 60.037 55.0 9.00 0.00 37.42 3.16 F
798 1089 0.678395 CGTCTCCCATCTCCATCAGG 59.322 60.0 0.00 0.00 0.00 3.86 F
985 1281 0.884704 GTTTCAGAACCAGCAGCCGA 60.885 55.0 0.00 0.00 0.00 5.54 F
1865 2183 1.196012 CCTCACCTCCAACTCCTACC 58.804 60.0 0.00 0.00 0.00 3.18 F
2744 3062 0.528924 CATGTTGCCACCATGGACTG 59.471 55.0 21.47 7.12 40.96 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1790 2108 0.687354 ATGACGAGCACCCTTCTTGT 59.313 50.000 0.00 0.00 0.00 3.16 R
2048 2366 1.228398 TGCTCCGATGGGTTTGCAA 60.228 52.632 0.00 0.00 34.31 4.08 R
2119 2437 0.375106 GATTCCTGCAGCGCAAGTAC 59.625 55.000 11.47 0.00 38.41 2.73 R
2732 3050 2.475466 GCATCGCAGTCCATGGTGG 61.475 63.158 12.58 3.64 39.43 4.61 R
3332 3652 0.102120 CCTTCTAGAGTCTGGCGCTG 59.898 60.000 7.64 0.11 0.00 5.18 R
4733 5087 0.032017 GAGGGGAGAGCAGGGAGTTA 60.032 60.000 0.00 0.00 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.491652 GCTTCGCCGCTCCTTCAC 61.492 66.667 0.00 0.00 0.00 3.18
26 27 2.048222 CTTCGCCGCTCCTTCACA 60.048 61.111 0.00 0.00 0.00 3.58
27 28 1.667830 CTTCGCCGCTCCTTCACAA 60.668 57.895 0.00 0.00 0.00 3.33
28 29 1.003839 TTCGCCGCTCCTTCACAAT 60.004 52.632 0.00 0.00 0.00 2.71
29 30 0.605319 TTCGCCGCTCCTTCACAATT 60.605 50.000 0.00 0.00 0.00 2.32
30 31 1.135315 CGCCGCTCCTTCACAATTG 59.865 57.895 3.24 3.24 0.00 2.32
31 32 1.153958 GCCGCTCCTTCACAATTGC 60.154 57.895 5.05 0.00 0.00 3.56
32 33 1.508088 CCGCTCCTTCACAATTGCC 59.492 57.895 5.05 0.00 0.00 4.52
33 34 1.508088 CGCTCCTTCACAATTGCCC 59.492 57.895 5.05 0.00 0.00 5.36
34 35 1.508088 GCTCCTTCACAATTGCCCG 59.492 57.895 5.05 0.00 0.00 6.13
35 36 1.508088 CTCCTTCACAATTGCCCGC 59.492 57.895 5.05 0.00 0.00 6.13
36 37 0.962356 CTCCTTCACAATTGCCCGCT 60.962 55.000 5.05 0.00 0.00 5.52
37 38 0.539438 TCCTTCACAATTGCCCGCTT 60.539 50.000 5.05 0.00 0.00 4.68
38 39 0.109132 CCTTCACAATTGCCCGCTTC 60.109 55.000 5.05 0.00 0.00 3.86
39 40 0.597568 CTTCACAATTGCCCGCTTCA 59.402 50.000 5.05 0.00 0.00 3.02
40 41 1.000385 CTTCACAATTGCCCGCTTCAA 60.000 47.619 5.05 0.00 0.00 2.69
41 42 1.035923 TCACAATTGCCCGCTTCAAA 58.964 45.000 5.05 0.00 0.00 2.69
42 43 1.410517 TCACAATTGCCCGCTTCAAAA 59.589 42.857 5.05 0.00 0.00 2.44
43 44 2.036992 TCACAATTGCCCGCTTCAAAAT 59.963 40.909 5.05 0.00 0.00 1.82
44 45 2.807392 CACAATTGCCCGCTTCAAAATT 59.193 40.909 5.05 0.00 0.00 1.82
45 46 2.807392 ACAATTGCCCGCTTCAAAATTG 59.193 40.909 5.05 7.49 41.68 2.32
46 47 2.097680 ATTGCCCGCTTCAAAATTGG 57.902 45.000 0.00 0.00 0.00 3.16
47 48 0.755686 TTGCCCGCTTCAAAATTGGT 59.244 45.000 0.00 0.00 0.00 3.67
48 49 0.316841 TGCCCGCTTCAAAATTGGTC 59.683 50.000 0.00 0.00 0.00 4.02
49 50 0.732538 GCCCGCTTCAAAATTGGTCG 60.733 55.000 0.00 0.00 0.00 4.79
50 51 0.109319 CCCGCTTCAAAATTGGTCGG 60.109 55.000 11.72 11.72 35.84 4.79
51 52 0.109319 CCGCTTCAAAATTGGTCGGG 60.109 55.000 11.17 2.53 34.04 5.14
52 53 0.732538 CGCTTCAAAATTGGTCGGGC 60.733 55.000 0.00 0.00 0.00 6.13
53 54 0.603065 GCTTCAAAATTGGTCGGGCT 59.397 50.000 0.00 0.00 0.00 5.19
54 55 1.816224 GCTTCAAAATTGGTCGGGCTA 59.184 47.619 0.00 0.00 0.00 3.93
55 56 2.159379 GCTTCAAAATTGGTCGGGCTAG 60.159 50.000 0.00 0.00 0.00 3.42
56 57 1.459450 TCAAAATTGGTCGGGCTAGC 58.541 50.000 6.04 6.04 0.00 3.42
57 58 0.098728 CAAAATTGGTCGGGCTAGCG 59.901 55.000 9.00 0.00 0.00 4.26
58 59 0.035820 AAAATTGGTCGGGCTAGCGA 60.036 50.000 9.00 0.00 0.00 4.93
59 60 0.462047 AAATTGGTCGGGCTAGCGAG 60.462 55.000 9.00 5.12 0.00 5.03
60 61 1.327690 AATTGGTCGGGCTAGCGAGA 61.328 55.000 9.00 7.67 0.00 4.04
61 62 1.327690 ATTGGTCGGGCTAGCGAGAA 61.328 55.000 9.00 0.00 0.00 2.87
62 63 2.104530 GGTCGGGCTAGCGAGAAC 59.895 66.667 9.00 9.46 0.00 3.01
63 64 2.104530 GTCGGGCTAGCGAGAACC 59.895 66.667 9.00 2.53 0.00 3.62
64 65 2.361992 TCGGGCTAGCGAGAACCA 60.362 61.111 9.00 0.00 0.00 3.67
65 66 2.202756 CGGGCTAGCGAGAACCAC 60.203 66.667 9.00 0.00 0.00 4.16
66 67 2.711922 CGGGCTAGCGAGAACCACT 61.712 63.158 9.00 0.00 0.00 4.00
67 68 1.153549 GGGCTAGCGAGAACCACTG 60.154 63.158 9.00 0.00 0.00 3.66
68 69 1.592223 GGCTAGCGAGAACCACTGT 59.408 57.895 9.00 0.00 0.00 3.55
69 70 0.037232 GGCTAGCGAGAACCACTGTT 60.037 55.000 9.00 0.00 37.42 3.16
70 71 1.203994 GGCTAGCGAGAACCACTGTTA 59.796 52.381 9.00 0.00 33.97 2.41
71 72 2.353406 GGCTAGCGAGAACCACTGTTAA 60.353 50.000 9.00 0.00 33.97 2.01
72 73 3.522553 GCTAGCGAGAACCACTGTTAAT 58.477 45.455 0.00 0.00 33.97 1.40
73 74 4.441079 GGCTAGCGAGAACCACTGTTAATA 60.441 45.833 9.00 0.00 33.97 0.98
74 75 5.107133 GCTAGCGAGAACCACTGTTAATAA 58.893 41.667 0.00 0.00 33.97 1.40
75 76 5.579511 GCTAGCGAGAACCACTGTTAATAAA 59.420 40.000 0.00 0.00 33.97 1.40
76 77 6.258068 GCTAGCGAGAACCACTGTTAATAAAT 59.742 38.462 0.00 0.00 33.97 1.40
77 78 6.663944 AGCGAGAACCACTGTTAATAAATC 57.336 37.500 0.00 0.00 33.97 2.17
78 79 5.585047 AGCGAGAACCACTGTTAATAAATCC 59.415 40.000 0.00 0.00 33.97 3.01
79 80 5.220796 GCGAGAACCACTGTTAATAAATCCC 60.221 44.000 0.00 0.00 33.97 3.85
80 81 6.113411 CGAGAACCACTGTTAATAAATCCCT 58.887 40.000 0.00 0.00 33.97 4.20
81 82 7.270047 CGAGAACCACTGTTAATAAATCCCTA 58.730 38.462 0.00 0.00 33.97 3.53
82 83 7.931948 CGAGAACCACTGTTAATAAATCCCTAT 59.068 37.037 0.00 0.00 33.97 2.57
83 84 9.628500 GAGAACCACTGTTAATAAATCCCTATT 57.372 33.333 0.00 0.00 33.97 1.73
84 85 9.628500 AGAACCACTGTTAATAAATCCCTATTC 57.372 33.333 0.00 0.00 33.97 1.75
85 86 8.446599 AACCACTGTTAATAAATCCCTATTCG 57.553 34.615 0.00 0.00 31.36 3.34
86 87 6.485648 ACCACTGTTAATAAATCCCTATTCGC 59.514 38.462 0.00 0.00 0.00 4.70
87 88 6.072673 CCACTGTTAATAAATCCCTATTCGCC 60.073 42.308 0.00 0.00 0.00 5.54
88 89 5.699458 ACTGTTAATAAATCCCTATTCGCCG 59.301 40.000 0.00 0.00 0.00 6.46
89 90 4.453136 TGTTAATAAATCCCTATTCGCCGC 59.547 41.667 0.00 0.00 0.00 6.53
90 91 2.851263 ATAAATCCCTATTCGCCGCA 57.149 45.000 0.00 0.00 0.00 5.69
91 92 1.873698 TAAATCCCTATTCGCCGCAC 58.126 50.000 0.00 0.00 0.00 5.34
92 93 1.157870 AAATCCCTATTCGCCGCACG 61.158 55.000 0.00 0.00 45.62 5.34
215 216 5.189928 TGTTATAAATCTGCCAACGTGGAT 58.810 37.500 8.04 0.00 40.96 3.41
269 271 1.754226 GAGAGTGAGAGCAAGGTAGGG 59.246 57.143 0.00 0.00 0.00 3.53
406 408 1.019673 CCTGGCATCTCATTTCGTGG 58.980 55.000 0.00 0.00 0.00 4.94
461 494 8.986477 AATAAATAAACCTCACAAGTTCATGC 57.014 30.769 0.00 0.00 0.00 4.06
575 615 1.351430 TTCGGCGTCAAAGATGCTCG 61.351 55.000 6.85 11.77 43.35 5.03
740 1030 1.715931 TGGATGGATGGTCAAAACCCT 59.284 47.619 0.00 0.00 45.83 4.34
741 1031 2.102578 GGATGGATGGTCAAAACCCTG 58.897 52.381 0.00 0.00 45.83 4.45
742 1032 1.478105 GATGGATGGTCAAAACCCTGC 59.522 52.381 0.00 0.00 45.83 4.85
768 1059 6.125029 TGATTTGATTTGATCTCTCCCCTTC 58.875 40.000 0.00 0.00 0.00 3.46
769 1060 5.786121 TTTGATTTGATCTCTCCCCTTCT 57.214 39.130 0.00 0.00 0.00 2.85
770 1061 5.365021 TTGATTTGATCTCTCCCCTTCTC 57.635 43.478 0.00 0.00 0.00 2.87
771 1062 3.713764 TGATTTGATCTCTCCCCTTCTCC 59.286 47.826 0.00 0.00 0.00 3.71
772 1063 3.498614 TTTGATCTCTCCCCTTCTCCT 57.501 47.619 0.00 0.00 0.00 3.69
773 1064 2.765689 TGATCTCTCCCCTTCTCCTC 57.234 55.000 0.00 0.00 0.00 3.71
774 1065 1.219213 TGATCTCTCCCCTTCTCCTCC 59.781 57.143 0.00 0.00 0.00 4.30
775 1066 1.503347 GATCTCTCCCCTTCTCCTCCT 59.497 57.143 0.00 0.00 0.00 3.69
776 1067 1.398799 TCTCTCCCCTTCTCCTCCTT 58.601 55.000 0.00 0.00 0.00 3.36
798 1089 0.678395 CGTCTCCCATCTCCATCAGG 59.322 60.000 0.00 0.00 0.00 3.86
799 1090 1.055040 GTCTCCCATCTCCATCAGGG 58.945 60.000 0.00 0.00 42.86 4.45
985 1281 0.884704 GTTTCAGAACCAGCAGCCGA 60.885 55.000 0.00 0.00 0.00 5.54
1436 1742 4.957954 AGAGGTACGTACACCCATTGATTA 59.042 41.667 26.02 0.00 39.62 1.75
1689 2007 2.496899 TTGCCTTGTCCATTCTCCTC 57.503 50.000 0.00 0.00 0.00 3.71
1865 2183 1.196012 CCTCACCTCCAACTCCTACC 58.804 60.000 0.00 0.00 0.00 3.18
1925 2243 3.657398 TCATCATCTGCTTCCACCAAT 57.343 42.857 0.00 0.00 0.00 3.16
2000 2318 3.780850 CCCCTGAACCAGTAGGAACTAAT 59.219 47.826 0.00 0.00 45.48 1.73
2048 2366 2.169330 GGACCTTCCGAGTACAGAGTT 58.831 52.381 0.00 0.00 0.00 3.01
2072 2390 1.274703 AACCCATCGGAGCACAGGAT 61.275 55.000 0.00 0.00 0.00 3.24
2087 2405 2.629002 GGATGCGTCCACACAAACT 58.371 52.632 20.55 0.00 44.42 2.66
2124 2442 5.247792 AGGGATGTTCCTTCTAAACGTACTT 59.752 40.000 0.00 0.00 36.57 2.24
2450 2768 1.244019 AAGATCACCGTGGCTTTGGC 61.244 55.000 0.00 0.00 37.82 4.52
2732 3050 2.689471 TGATTGTGGGCTATCATGTTGC 59.311 45.455 0.00 0.00 33.25 4.17
2744 3062 0.528924 CATGTTGCCACCATGGACTG 59.471 55.000 21.47 7.12 40.96 3.51
2851 3171 5.812127 TGTTGGACATTTATGATCTCTCGTG 59.188 40.000 0.00 0.00 0.00 4.35
2989 3309 2.840651 CTGAGGTTTAGTGGACATCCCT 59.159 50.000 0.00 0.00 35.38 4.20
3004 3324 3.404081 ACATCCCTCTCTATGATCTCCCA 59.596 47.826 0.00 0.00 0.00 4.37
3227 3547 7.503521 TCATGTTTTTAGTTGCTATGTCACA 57.496 32.000 0.00 0.00 0.00 3.58
3500 3820 4.296690 AGTCAACAAGAACGTAGTACTGC 58.703 43.478 5.39 2.60 45.00 4.40
3694 4014 5.700846 TCTGTTTCTAGAGATTGACGACAC 58.299 41.667 0.00 0.00 0.00 3.67
3716 4036 5.172951 CACACACACACAAAAATCATAACCG 59.827 40.000 0.00 0.00 0.00 4.44
3785 4105 4.214971 GTGTGAAGAAAGTGATGACAGCAT 59.785 41.667 0.00 0.00 37.47 3.79
3839 4159 3.304726 GCTGTGAACTTACCTTCTTTGGC 60.305 47.826 0.00 0.00 0.00 4.52
3848 4168 2.041701 ACCTTCTTTGGCATTTGCTGT 58.958 42.857 2.12 0.00 41.70 4.40
3883 4203 3.186909 GTTGGGTTGAAAGTGCAGTTTC 58.813 45.455 31.46 31.46 37.02 2.78
3891 4211 6.313658 GGTTGAAAGTGCAGTTTCATTCTTTT 59.686 34.615 37.46 9.46 44.06 2.27
3984 4304 4.103153 TCAGGAAGAATTTGTCACTCCAGT 59.897 41.667 0.00 0.00 34.40 4.00
4011 4331 9.217278 GAGTCCGTACAATATCTTACTCTGATA 57.783 37.037 0.00 0.00 31.59 2.15
4040 4360 3.119459 TCTCCTGCGTCTTGTATCAGTTC 60.119 47.826 0.00 0.00 0.00 3.01
4357 4679 2.167900 GGGAGCCTCGAGTTAGCTTTTA 59.832 50.000 14.65 0.00 36.87 1.52
4475 4829 0.746659 GTTTGGCAGTCTGGTTTGCT 59.253 50.000 1.14 0.00 40.15 3.91
4493 4847 6.818644 GGTTTGCTCTGAATTCAGTATACTCA 59.181 38.462 29.80 17.76 44.12 3.41
4550 4904 5.004448 TGGACGTGGTGATTGCTTTATTTA 58.996 37.500 0.00 0.00 0.00 1.40
4551 4905 5.650266 TGGACGTGGTGATTGCTTTATTTAT 59.350 36.000 0.00 0.00 0.00 1.40
4552 4906 6.824196 TGGACGTGGTGATTGCTTTATTTATA 59.176 34.615 0.00 0.00 0.00 0.98
4553 4907 7.337184 TGGACGTGGTGATTGCTTTATTTATAA 59.663 33.333 0.00 0.00 0.00 0.98
4574 4928 0.685097 TAAAGCACGGTGAGAGCCTT 59.315 50.000 13.29 2.16 37.13 4.35
4648 5002 0.467290 GGCCTGGTTGTGGAGAAACA 60.467 55.000 0.00 0.00 0.00 2.83
4676 5030 3.737559 TGACCATTTCTAGCAACCCAT 57.262 42.857 0.00 0.00 0.00 4.00
4677 5031 4.853468 TGACCATTTCTAGCAACCCATA 57.147 40.909 0.00 0.00 0.00 2.74
4680 5034 5.827797 TGACCATTTCTAGCAACCCATATTC 59.172 40.000 0.00 0.00 0.00 1.75
4689 5043 4.361253 CCCATATTCGAGCGGGTG 57.639 61.111 3.11 0.00 33.67 4.61
4692 5046 1.224069 CCATATTCGAGCGGGTGCAG 61.224 60.000 0.00 0.00 46.23 4.41
4693 5047 1.595382 ATATTCGAGCGGGTGCAGC 60.595 57.895 7.55 7.55 46.23 5.25
4708 5062 3.181367 AGCGTTGCACATAGCTGC 58.819 55.556 0.00 0.00 45.94 5.25
4709 5063 1.672030 AGCGTTGCACATAGCTGCA 60.672 52.632 1.02 0.00 45.59 4.41
4710 5064 1.512734 GCGTTGCACATAGCTGCAC 60.513 57.895 1.02 0.00 46.90 4.57
4711 5065 1.225827 CGTTGCACATAGCTGCACG 60.226 57.895 1.02 1.56 46.90 5.34
4712 5066 1.512734 GTTGCACATAGCTGCACGC 60.513 57.895 1.02 0.00 46.90 5.34
4713 5067 2.689785 TTGCACATAGCTGCACGCC 61.690 57.895 1.02 0.00 46.90 5.68
4714 5068 2.821366 GCACATAGCTGCACGCCT 60.821 61.111 1.02 0.00 41.15 5.52
4715 5069 2.401766 GCACATAGCTGCACGCCTT 61.402 57.895 1.02 0.00 41.15 4.35
4716 5070 1.426621 CACATAGCTGCACGCCTTG 59.573 57.895 1.02 5.74 40.39 3.61
4717 5071 1.746615 ACATAGCTGCACGCCTTGG 60.747 57.895 1.02 0.00 40.39 3.61
4718 5072 2.124570 ATAGCTGCACGCCTTGGG 60.125 61.111 1.02 0.00 40.39 4.12
4719 5073 2.669133 ATAGCTGCACGCCTTGGGA 61.669 57.895 1.02 0.00 40.39 4.37
4720 5074 2.196997 ATAGCTGCACGCCTTGGGAA 62.197 55.000 1.02 0.00 40.39 3.97
4721 5075 2.803155 TAGCTGCACGCCTTGGGAAG 62.803 60.000 1.02 0.00 40.39 3.46
4722 5076 3.741476 CTGCACGCCTTGGGAAGC 61.741 66.667 0.00 0.00 0.00 3.86
4734 5088 4.235762 GGAAGCGCGGGAGGCATA 62.236 66.667 8.83 0.00 43.84 3.14
4735 5089 2.203015 GAAGCGCGGGAGGCATAA 60.203 61.111 8.83 0.00 43.84 1.90
4736 5090 2.513897 AAGCGCGGGAGGCATAAC 60.514 61.111 8.83 0.00 43.84 1.89
4737 5091 2.925162 GAAGCGCGGGAGGCATAACT 62.925 60.000 8.83 0.00 43.84 2.24
4738 5092 2.925162 AAGCGCGGGAGGCATAACTC 62.925 60.000 8.83 0.00 43.84 3.01
4745 5099 3.696306 GAGGCATAACTCCCTGCTC 57.304 57.895 0.00 0.00 38.45 4.26
4746 5100 1.127343 GAGGCATAACTCCCTGCTCT 58.873 55.000 0.00 0.00 38.45 4.09
4747 5101 1.069978 GAGGCATAACTCCCTGCTCTC 59.930 57.143 0.00 0.00 38.45 3.20
4748 5102 0.107643 GGCATAACTCCCTGCTCTCC 59.892 60.000 0.00 0.00 38.45 3.71
4749 5103 0.107643 GCATAACTCCCTGCTCTCCC 59.892 60.000 0.00 0.00 35.49 4.30
4750 5104 0.761802 CATAACTCCCTGCTCTCCCC 59.238 60.000 0.00 0.00 0.00 4.81
4751 5105 0.644937 ATAACTCCCTGCTCTCCCCT 59.355 55.000 0.00 0.00 0.00 4.79
4752 5106 0.032017 TAACTCCCTGCTCTCCCCTC 60.032 60.000 0.00 0.00 0.00 4.30
4753 5107 1.820866 AACTCCCTGCTCTCCCCTCT 61.821 60.000 0.00 0.00 0.00 3.69
4754 5108 1.002792 CTCCCTGCTCTCCCCTCTT 59.997 63.158 0.00 0.00 0.00 2.85
4755 5109 1.306482 TCCCTGCTCTCCCCTCTTG 60.306 63.158 0.00 0.00 0.00 3.02
4756 5110 2.373707 CCCTGCTCTCCCCTCTTGG 61.374 68.421 0.00 0.00 0.00 3.61
4757 5111 1.614824 CCTGCTCTCCCCTCTTGGT 60.615 63.158 0.00 0.00 0.00 3.67
4758 5112 1.621672 CCTGCTCTCCCCTCTTGGTC 61.622 65.000 0.00 0.00 0.00 4.02
4759 5113 1.613630 TGCTCTCCCCTCTTGGTCC 60.614 63.158 0.00 0.00 0.00 4.46
4760 5114 1.613630 GCTCTCCCCTCTTGGTCCA 60.614 63.158 0.00 0.00 0.00 4.02
4761 5115 1.201429 GCTCTCCCCTCTTGGTCCAA 61.201 60.000 3.76 3.76 0.00 3.53
4762 5116 0.908198 CTCTCCCCTCTTGGTCCAAG 59.092 60.000 23.69 23.69 42.25 3.61
4763 5117 0.547712 TCTCCCCTCTTGGTCCAAGG 60.548 60.000 27.79 18.89 41.33 3.61
4768 5122 2.134789 CCTCTTGGTCCAAGGGAATG 57.865 55.000 30.10 11.92 44.03 2.67
4769 5123 1.355720 CCTCTTGGTCCAAGGGAATGT 59.644 52.381 30.10 0.00 44.03 2.71
4770 5124 2.576191 CCTCTTGGTCCAAGGGAATGTA 59.424 50.000 30.10 9.57 44.03 2.29
4771 5125 3.203040 CCTCTTGGTCCAAGGGAATGTAT 59.797 47.826 30.10 0.00 44.03 2.29
4772 5126 4.455606 CTCTTGGTCCAAGGGAATGTATC 58.544 47.826 25.29 0.00 44.03 2.24
4773 5127 4.687219 CTCTTGGTCCAAGGGAATGTATCC 60.687 50.000 25.29 0.00 44.03 2.59
4781 5135 2.702847 GGAATGTATCCGGTGCACC 58.297 57.895 26.78 26.78 38.79 5.01
4782 5136 0.818040 GGAATGTATCCGGTGCACCC 60.818 60.000 29.95 15.85 38.79 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.021390 ATTGTGAAGGAGCGGCGAAG 61.021 55.000 12.98 0.00 0.00 3.79
10 11 0.605319 AATTGTGAAGGAGCGGCGAA 60.605 50.000 12.98 0.00 0.00 4.70
11 12 1.003839 AATTGTGAAGGAGCGGCGA 60.004 52.632 12.98 0.00 0.00 5.54
12 13 1.135315 CAATTGTGAAGGAGCGGCG 59.865 57.895 0.51 0.51 0.00 6.46
13 14 1.153958 GCAATTGTGAAGGAGCGGC 60.154 57.895 7.40 0.00 0.00 6.53
14 15 1.508088 GGCAATTGTGAAGGAGCGG 59.492 57.895 7.40 0.00 0.00 5.52
15 16 1.508088 GGGCAATTGTGAAGGAGCG 59.492 57.895 7.40 0.00 0.00 5.03
16 17 1.508088 CGGGCAATTGTGAAGGAGC 59.492 57.895 7.40 0.00 0.00 4.70
17 18 0.962356 AGCGGGCAATTGTGAAGGAG 60.962 55.000 7.40 0.00 0.00 3.69
18 19 0.539438 AAGCGGGCAATTGTGAAGGA 60.539 50.000 7.40 0.00 0.00 3.36
19 20 0.109132 GAAGCGGGCAATTGTGAAGG 60.109 55.000 7.40 0.00 0.00 3.46
20 21 0.597568 TGAAGCGGGCAATTGTGAAG 59.402 50.000 7.40 0.00 0.00 3.02
21 22 1.035923 TTGAAGCGGGCAATTGTGAA 58.964 45.000 7.40 0.00 0.00 3.18
22 23 1.035923 TTTGAAGCGGGCAATTGTGA 58.964 45.000 7.40 0.00 0.00 3.58
23 24 1.863267 TTTTGAAGCGGGCAATTGTG 58.137 45.000 7.40 0.00 0.00 3.33
24 25 2.807392 CAATTTTGAAGCGGGCAATTGT 59.193 40.909 7.40 0.00 32.48 2.71
25 26 2.160022 CCAATTTTGAAGCGGGCAATTG 59.840 45.455 0.00 0.00 35.48 2.32
26 27 2.224499 ACCAATTTTGAAGCGGGCAATT 60.224 40.909 0.00 0.00 0.00 2.32
27 28 1.347378 ACCAATTTTGAAGCGGGCAAT 59.653 42.857 0.00 0.00 0.00 3.56
28 29 0.755686 ACCAATTTTGAAGCGGGCAA 59.244 45.000 0.00 0.00 0.00 4.52
29 30 0.316841 GACCAATTTTGAAGCGGGCA 59.683 50.000 0.00 0.00 0.00 5.36
30 31 0.732538 CGACCAATTTTGAAGCGGGC 60.733 55.000 0.00 0.00 0.00 6.13
31 32 0.109319 CCGACCAATTTTGAAGCGGG 60.109 55.000 0.00 0.00 34.59 6.13
32 33 0.109319 CCCGACCAATTTTGAAGCGG 60.109 55.000 0.00 0.00 36.45 5.52
33 34 0.732538 GCCCGACCAATTTTGAAGCG 60.733 55.000 0.00 0.00 0.00 4.68
34 35 0.603065 AGCCCGACCAATTTTGAAGC 59.397 50.000 0.00 0.00 0.00 3.86
35 36 2.159379 GCTAGCCCGACCAATTTTGAAG 60.159 50.000 2.29 0.00 0.00 3.02
36 37 1.816224 GCTAGCCCGACCAATTTTGAA 59.184 47.619 2.29 0.00 0.00 2.69
37 38 1.459450 GCTAGCCCGACCAATTTTGA 58.541 50.000 2.29 0.00 0.00 2.69
38 39 0.098728 CGCTAGCCCGACCAATTTTG 59.901 55.000 9.66 0.00 0.00 2.44
39 40 0.035820 TCGCTAGCCCGACCAATTTT 60.036 50.000 9.66 0.00 31.36 1.82
40 41 0.462047 CTCGCTAGCCCGACCAATTT 60.462 55.000 9.66 0.00 33.12 1.82
41 42 1.144057 CTCGCTAGCCCGACCAATT 59.856 57.895 9.66 0.00 33.12 2.32
42 43 1.327690 TTCTCGCTAGCCCGACCAAT 61.328 55.000 9.66 0.00 33.12 3.16
43 44 1.980232 TTCTCGCTAGCCCGACCAA 60.980 57.895 9.66 0.00 33.12 3.67
44 45 2.361992 TTCTCGCTAGCCCGACCA 60.362 61.111 9.66 0.00 33.12 4.02
45 46 2.104530 GTTCTCGCTAGCCCGACC 59.895 66.667 9.66 0.00 33.12 4.79
46 47 2.104530 GGTTCTCGCTAGCCCGAC 59.895 66.667 9.66 2.98 33.12 4.79
47 48 2.361992 TGGTTCTCGCTAGCCCGA 60.362 61.111 9.66 2.56 35.68 5.14
48 49 2.202756 GTGGTTCTCGCTAGCCCG 60.203 66.667 9.66 0.00 0.00 6.13
49 50 1.153549 CAGTGGTTCTCGCTAGCCC 60.154 63.158 9.66 4.45 34.34 5.19
50 51 0.037232 AACAGTGGTTCTCGCTAGCC 60.037 55.000 9.66 0.00 34.34 3.93
51 52 2.649331 TAACAGTGGTTCTCGCTAGC 57.351 50.000 4.06 4.06 38.45 3.42
52 53 7.042658 GGATTTATTAACAGTGGTTCTCGCTAG 60.043 40.741 0.00 0.00 38.45 3.42
53 54 6.759827 GGATTTATTAACAGTGGTTCTCGCTA 59.240 38.462 0.00 0.00 38.45 4.26
54 55 5.585047 GGATTTATTAACAGTGGTTCTCGCT 59.415 40.000 0.00 0.00 38.45 4.93
55 56 5.220796 GGGATTTATTAACAGTGGTTCTCGC 60.221 44.000 0.00 0.00 38.45 5.03
56 57 6.113411 AGGGATTTATTAACAGTGGTTCTCG 58.887 40.000 0.00 0.00 38.45 4.04
57 58 9.628500 AATAGGGATTTATTAACAGTGGTTCTC 57.372 33.333 0.00 0.00 38.45 2.87
58 59 9.628500 GAATAGGGATTTATTAACAGTGGTTCT 57.372 33.333 0.00 0.00 38.45 3.01
59 60 8.557029 CGAATAGGGATTTATTAACAGTGGTTC 58.443 37.037 0.00 0.00 38.45 3.62
60 61 7.012989 GCGAATAGGGATTTATTAACAGTGGTT 59.987 37.037 0.00 0.00 41.06 3.67
61 62 6.485648 GCGAATAGGGATTTATTAACAGTGGT 59.514 38.462 0.00 0.00 0.00 4.16
62 63 6.072673 GGCGAATAGGGATTTATTAACAGTGG 60.073 42.308 0.00 0.00 0.00 4.00
63 64 6.347402 CGGCGAATAGGGATTTATTAACAGTG 60.347 42.308 0.00 0.00 0.00 3.66
64 65 5.699458 CGGCGAATAGGGATTTATTAACAGT 59.301 40.000 0.00 0.00 0.00 3.55
65 66 5.390567 GCGGCGAATAGGGATTTATTAACAG 60.391 44.000 12.98 0.00 0.00 3.16
66 67 4.453136 GCGGCGAATAGGGATTTATTAACA 59.547 41.667 12.98 0.00 0.00 2.41
67 68 4.453136 TGCGGCGAATAGGGATTTATTAAC 59.547 41.667 12.98 0.00 0.00 2.01
68 69 4.453136 GTGCGGCGAATAGGGATTTATTAA 59.547 41.667 12.98 0.00 0.00 1.40
69 70 3.998341 GTGCGGCGAATAGGGATTTATTA 59.002 43.478 12.98 0.00 0.00 0.98
70 71 2.812011 GTGCGGCGAATAGGGATTTATT 59.188 45.455 12.98 0.00 0.00 1.40
71 72 2.423577 GTGCGGCGAATAGGGATTTAT 58.576 47.619 12.98 0.00 0.00 1.40
72 73 1.870580 CGTGCGGCGAATAGGGATTTA 60.871 52.381 12.98 0.00 44.77 1.40
73 74 1.157870 CGTGCGGCGAATAGGGATTT 61.158 55.000 12.98 0.00 44.77 2.17
74 75 1.594293 CGTGCGGCGAATAGGGATT 60.594 57.895 12.98 0.00 44.77 3.01
75 76 2.029073 CGTGCGGCGAATAGGGAT 59.971 61.111 12.98 0.00 44.77 3.85
76 77 4.884257 GCGTGCGGCGAATAGGGA 62.884 66.667 12.98 0.00 44.77 4.20
86 87 2.476534 AAAAATGGCTCAGCGTGCGG 62.477 55.000 0.00 0.00 0.00 5.69
87 88 1.081242 AAAAATGGCTCAGCGTGCG 60.081 52.632 0.00 0.00 0.00 5.34
88 89 4.972591 AAAAATGGCTCAGCGTGC 57.027 50.000 0.00 0.00 0.00 5.34
125 126 2.036992 CCAACAGCAGCCCAATAACAAA 59.963 45.455 0.00 0.00 0.00 2.83
126 127 1.617850 CCAACAGCAGCCCAATAACAA 59.382 47.619 0.00 0.00 0.00 2.83
164 165 5.851177 CACGAAGTATTTTTAAGGCACAGTG 59.149 40.000 0.00 0.00 41.61 3.66
165 166 5.529800 ACACGAAGTATTTTTAAGGCACAGT 59.470 36.000 0.00 0.00 41.61 3.55
178 179 9.314321 CAGATTTATAACAGGACACGAAGTATT 57.686 33.333 0.00 0.00 41.61 1.89
215 216 7.514127 AGAGGAATATTCATTCTACCAGCCTTA 59.486 37.037 17.07 0.00 40.45 2.69
285 287 1.608717 CGCCCTACCTTGCTCTCACT 61.609 60.000 0.00 0.00 0.00 3.41
351 353 6.147164 GCACAGTAGTAGCAGTGTTTGATTTA 59.853 38.462 0.00 0.00 34.59 1.40
367 369 1.746220 GGATCTCGAGTGCACAGTAGT 59.254 52.381 21.04 0.00 0.00 2.73
406 408 0.823460 CAGGAGAGAGAAGGCCAGAC 59.177 60.000 5.01 0.00 0.00 3.51
615 659 7.570132 TCAATGATTAATCCCTTCTTCCGTAA 58.430 34.615 12.90 0.00 0.00 3.18
740 1030 5.359009 GGGAGAGATCAAATCAAATCAAGCA 59.641 40.000 0.00 0.00 0.00 3.91
741 1031 5.221204 GGGGAGAGATCAAATCAAATCAAGC 60.221 44.000 0.00 0.00 0.00 4.01
742 1032 6.127793 AGGGGAGAGATCAAATCAAATCAAG 58.872 40.000 0.00 0.00 0.00 3.02
768 1059 2.726351 GGGAGACGGCAAGGAGGAG 61.726 68.421 0.00 0.00 0.00 3.69
769 1060 2.683933 GGGAGACGGCAAGGAGGA 60.684 66.667 0.00 0.00 0.00 3.71
770 1061 2.317149 GATGGGAGACGGCAAGGAGG 62.317 65.000 0.00 0.00 0.00 4.30
771 1062 1.144936 GATGGGAGACGGCAAGGAG 59.855 63.158 0.00 0.00 0.00 3.69
772 1063 1.306141 AGATGGGAGACGGCAAGGA 60.306 57.895 0.00 0.00 0.00 3.36
773 1064 1.144936 GAGATGGGAGACGGCAAGG 59.855 63.158 0.00 0.00 0.00 3.61
774 1065 1.144936 GGAGATGGGAGACGGCAAG 59.855 63.158 0.00 0.00 0.00 4.01
775 1066 0.982852 ATGGAGATGGGAGACGGCAA 60.983 55.000 0.00 0.00 0.00 4.52
776 1067 1.383109 ATGGAGATGGGAGACGGCA 60.383 57.895 0.00 0.00 0.00 5.69
798 1089 0.949397 GTCGGGAAGTGTTGGTTTCC 59.051 55.000 0.00 0.00 41.71 3.13
799 1090 1.871676 GAGTCGGGAAGTGTTGGTTTC 59.128 52.381 0.00 0.00 0.00 2.78
800 1091 1.210967 TGAGTCGGGAAGTGTTGGTTT 59.789 47.619 0.00 0.00 0.00 3.27
801 1092 0.834612 TGAGTCGGGAAGTGTTGGTT 59.165 50.000 0.00 0.00 0.00 3.67
811 1102 1.891150 GTGAGTTAGGTTGAGTCGGGA 59.109 52.381 0.00 0.00 0.00 5.14
985 1281 1.079127 CCATCCTTCCTTGTCGCGT 60.079 57.895 5.77 0.00 0.00 6.01
1436 1742 2.040178 AGTTGAACCCTCGACAAGAGT 58.960 47.619 0.00 0.00 45.44 3.24
1689 2007 3.121944 CGATCTGAAACAAGACAAGGTCG 59.878 47.826 0.00 0.00 37.67 4.79
1790 2108 0.687354 ATGACGAGCACCCTTCTTGT 59.313 50.000 0.00 0.00 0.00 3.16
1865 2183 1.361271 CAGCTGTTGTGGTTGCTGG 59.639 57.895 5.25 0.00 46.24 4.85
1925 2243 2.202610 CATTGCTCGTCCTCGCGA 60.203 61.111 9.26 9.26 39.22 5.87
2000 2318 4.924937 GAGCTTGCCTCTGATAATGGAACA 60.925 45.833 0.00 0.00 39.47 3.18
2048 2366 1.228398 TGCTCCGATGGGTTTGCAA 60.228 52.632 0.00 0.00 34.31 4.08
2072 2390 0.943673 CATCAGTTTGTGTGGACGCA 59.056 50.000 0.00 0.00 34.11 5.24
2087 2405 2.825223 ACATCCCTCTCACTGTCATCA 58.175 47.619 0.00 0.00 0.00 3.07
2119 2437 0.375106 GATTCCTGCAGCGCAAGTAC 59.625 55.000 11.47 0.00 38.41 2.73
2124 2442 3.012859 TACGGATTCCTGCAGCGCA 62.013 57.895 11.47 3.35 36.92 6.09
2450 2768 2.505407 TGGTCTGTATGTTGGGATGAGG 59.495 50.000 0.00 0.00 0.00 3.86
2732 3050 2.475466 GCATCGCAGTCCATGGTGG 61.475 63.158 12.58 3.64 39.43 4.61
2937 3257 5.572066 GCTGTTTGTTGTATCCTACCCCTTA 60.572 44.000 0.00 0.00 0.00 2.69
3291 3611 2.496871 AGAGGAGATGCTGAGTCAACAG 59.503 50.000 2.22 0.00 40.43 3.16
3332 3652 0.102120 CCTTCTAGAGTCTGGCGCTG 59.898 60.000 7.64 0.11 0.00 5.18
3694 4014 4.148000 GCGGTTATGATTTTTGTGTGTGTG 59.852 41.667 0.00 0.00 0.00 3.82
3785 4105 2.635915 ACAACCCCTTACAGTGATTCGA 59.364 45.455 0.00 0.00 0.00 3.71
3839 4159 4.214980 ACTTCGAGACAAACAGCAAATG 57.785 40.909 0.00 0.00 0.00 2.32
3848 4168 2.993937 ACCCAACAACTTCGAGACAAA 58.006 42.857 0.00 0.00 0.00 2.83
3891 4211 7.099266 TGAATCAAACTCAGCTCAAAGAAAA 57.901 32.000 0.00 0.00 0.00 2.29
3895 4215 7.437267 ACAAAATGAATCAAACTCAGCTCAAAG 59.563 33.333 0.00 0.00 0.00 2.77
3899 4219 7.327032 GGTTACAAAATGAATCAAACTCAGCTC 59.673 37.037 0.00 0.00 0.00 4.09
3984 4304 7.052248 TCAGAGTAAGATATTGTACGGACTCA 58.948 38.462 0.00 0.00 35.59 3.41
4011 4331 2.213499 CAAGACGCAGGAGACAAACTT 58.787 47.619 0.00 0.00 0.00 2.66
4357 4679 5.482908 CAGGCTCAGGCTTTATATACGAAT 58.517 41.667 0.00 0.00 35.88 3.34
4550 4904 3.877508 GGCTCTCACCGTGCTTTATTTAT 59.122 43.478 0.00 0.00 32.84 1.40
4551 4905 3.055385 AGGCTCTCACCGTGCTTTATTTA 60.055 43.478 0.00 0.00 32.84 1.40
4552 4906 2.084546 GGCTCTCACCGTGCTTTATTT 58.915 47.619 0.00 0.00 32.84 1.40
4553 4907 1.279271 AGGCTCTCACCGTGCTTTATT 59.721 47.619 0.00 0.00 32.84 1.40
4560 4914 0.512952 CGAAAAAGGCTCTCACCGTG 59.487 55.000 0.00 0.00 33.69 4.94
4574 4928 1.140052 TCAGTGCAACCCTCTCGAAAA 59.860 47.619 0.00 0.00 37.80 2.29
4610 4964 3.067320 GGCCCATGTCTGCTTTAAGATTC 59.933 47.826 0.00 0.00 0.00 2.52
4648 5002 6.404734 GGTTGCTAGAAATGGTCAATTCGATT 60.405 38.462 0.00 0.00 0.00 3.34
4676 5030 2.202878 GCTGCACCCGCTCGAATA 60.203 61.111 0.00 0.00 39.64 1.75
4705 5059 3.741476 GCTTCCCAAGGCGTGCAG 61.741 66.667 0.00 0.00 0.00 4.41
4717 5071 3.750373 TTATGCCTCCCGCGCTTCC 62.750 63.158 5.56 0.00 42.08 3.46
4718 5072 2.203015 TTATGCCTCCCGCGCTTC 60.203 61.111 5.56 0.00 42.08 3.86
4719 5073 2.513897 GTTATGCCTCCCGCGCTT 60.514 61.111 5.56 0.00 42.08 4.68
4720 5074 3.447025 GAGTTATGCCTCCCGCGCT 62.447 63.158 5.56 0.00 42.08 5.92
4721 5075 2.967615 GAGTTATGCCTCCCGCGC 60.968 66.667 0.00 0.00 42.08 6.86
4722 5076 2.280186 GGAGTTATGCCTCCCGCG 60.280 66.667 0.00 0.00 44.49 6.46
4726 5080 0.107643 GAGCAGGGAGTTATGCCTCC 59.892 60.000 4.33 4.33 45.81 4.30
4727 5081 1.069978 GAGAGCAGGGAGTTATGCCTC 59.930 57.143 0.00 0.00 45.81 4.70
4729 5083 0.107643 GGAGAGCAGGGAGTTATGCC 59.892 60.000 0.00 0.00 43.60 4.40
4730 5084 0.107643 GGGAGAGCAGGGAGTTATGC 59.892 60.000 0.00 0.00 42.87 3.14
4731 5085 0.761802 GGGGAGAGCAGGGAGTTATG 59.238 60.000 0.00 0.00 0.00 1.90
4732 5086 0.644937 AGGGGAGAGCAGGGAGTTAT 59.355 55.000 0.00 0.00 0.00 1.89
4733 5087 0.032017 GAGGGGAGAGCAGGGAGTTA 60.032 60.000 0.00 0.00 0.00 2.24
4734 5088 1.306568 GAGGGGAGAGCAGGGAGTT 60.307 63.158 0.00 0.00 0.00 3.01
4735 5089 1.820866 AAGAGGGGAGAGCAGGGAGT 61.821 60.000 0.00 0.00 0.00 3.85
4736 5090 1.002792 AAGAGGGGAGAGCAGGGAG 59.997 63.158 0.00 0.00 0.00 4.30
4737 5091 1.306482 CAAGAGGGGAGAGCAGGGA 60.306 63.158 0.00 0.00 0.00 4.20
4738 5092 2.373707 CCAAGAGGGGAGAGCAGGG 61.374 68.421 0.00 0.00 0.00 4.45
4739 5093 1.614824 ACCAAGAGGGGAGAGCAGG 60.615 63.158 0.00 0.00 42.91 4.85
4740 5094 1.621672 GGACCAAGAGGGGAGAGCAG 61.622 65.000 0.00 0.00 42.91 4.24
4741 5095 1.613630 GGACCAAGAGGGGAGAGCA 60.614 63.158 0.00 0.00 42.91 4.26
4742 5096 1.201429 TTGGACCAAGAGGGGAGAGC 61.201 60.000 1.69 0.00 42.91 4.09
4743 5097 0.908198 CTTGGACCAAGAGGGGAGAG 59.092 60.000 27.43 0.00 43.42 3.20
4744 5098 0.547712 CCTTGGACCAAGAGGGGAGA 60.548 60.000 31.94 0.00 43.42 3.71
4745 5099 1.566298 CCCTTGGACCAAGAGGGGAG 61.566 65.000 31.94 15.68 45.27 4.30
4746 5100 1.541368 CCCTTGGACCAAGAGGGGA 60.541 63.158 31.94 0.00 45.27 4.81
4747 5101 3.090765 CCCTTGGACCAAGAGGGG 58.909 66.667 31.94 22.79 45.27 4.79
4749 5103 1.355720 ACATTCCCTTGGACCAAGAGG 59.644 52.381 31.94 27.97 43.42 3.69
4750 5104 2.887151 ACATTCCCTTGGACCAAGAG 57.113 50.000 31.94 21.50 43.42 2.85
4751 5105 3.202151 GGATACATTCCCTTGGACCAAGA 59.798 47.826 31.94 15.30 40.91 3.02
4752 5106 3.555966 GGATACATTCCCTTGGACCAAG 58.444 50.000 25.05 25.05 40.75 3.61
4753 5107 2.092646 CGGATACATTCCCTTGGACCAA 60.093 50.000 6.76 6.76 42.06 3.67
4754 5108 1.488812 CGGATACATTCCCTTGGACCA 59.511 52.381 0.00 0.00 42.06 4.02
4755 5109 1.202770 CCGGATACATTCCCTTGGACC 60.203 57.143 0.00 0.00 42.06 4.46
4756 5110 1.489230 ACCGGATACATTCCCTTGGAC 59.511 52.381 9.46 0.00 42.06 4.02
4757 5111 1.488812 CACCGGATACATTCCCTTGGA 59.511 52.381 9.46 0.00 42.06 3.53
4758 5112 1.967319 CACCGGATACATTCCCTTGG 58.033 55.000 9.46 0.00 42.06 3.61
4759 5113 1.308998 GCACCGGATACATTCCCTTG 58.691 55.000 9.46 0.00 42.06 3.61
4760 5114 0.916086 TGCACCGGATACATTCCCTT 59.084 50.000 9.46 0.00 42.06 3.95
4761 5115 0.180406 GTGCACCGGATACATTCCCT 59.820 55.000 9.46 0.00 42.06 4.20
4762 5116 0.818040 GGTGCACCGGATACATTCCC 60.818 60.000 22.49 0.00 42.06 3.97
4763 5117 0.818040 GGGTGCACCGGATACATTCC 60.818 60.000 29.08 7.74 41.59 3.01
4764 5118 2.702847 GGGTGCACCGGATACATTC 58.297 57.895 29.08 8.51 36.71 2.67
4765 5119 4.977393 GGGTGCACCGGATACATT 57.023 55.556 29.08 0.00 36.71 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.