Multiple sequence alignment - TraesCS7D01G279900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G279900 chr7D 100.000 5689 0 0 1 5689 271766399 271772087 0.000000e+00 10506.0
1 TraesCS7D01G279900 chr7D 96.632 950 27 2 1 949 205800276 205799331 0.000000e+00 1572.0
2 TraesCS7D01G279900 chr7D 84.468 940 89 20 4750 5684 129976358 129977245 0.000000e+00 874.0
3 TraesCS7D01G279900 chr7D 81.876 789 87 35 1250 2005 582502059 582501294 1.050000e-171 614.0
4 TraesCS7D01G279900 chr7D 81.031 485 56 24 2710 3181 582464742 582464281 2.520000e-93 353.0
5 TraesCS7D01G279900 chr7D 81.092 238 24 7 3812 4046 582463454 582463235 2.730000e-38 171.0
6 TraesCS7D01G279900 chr7D 92.241 116 7 2 3623 3738 582463614 582463501 4.560000e-36 163.0
7 TraesCS7D01G279900 chr7D 90.909 99 9 0 2003 2101 582465321 582465223 3.580000e-27 134.0
8 TraesCS7D01G279900 chr7D 85.393 89 9 2 3208 3296 582464204 582464120 7.850000e-14 89.8
9 TraesCS7D01G279900 chr5D 97.474 950 23 1 1 949 352836987 352837936 0.000000e+00 1620.0
10 TraesCS7D01G279900 chr5D 96.842 950 29 1 1 949 15970585 15971534 0.000000e+00 1587.0
11 TraesCS7D01G279900 chr5D 89.595 173 17 1 2170 2342 498927103 498927274 9.600000e-53 219.0
12 TraesCS7D01G279900 chr4D 96.101 949 35 2 1 948 453139698 453138751 0.000000e+00 1546.0
13 TraesCS7D01G279900 chr1D 95.895 950 37 2 1 949 475800297 475799349 0.000000e+00 1537.0
14 TraesCS7D01G279900 chr3D 95.794 951 36 4 1 949 129457440 129456492 0.000000e+00 1531.0
15 TraesCS7D01G279900 chr3D 95.794 951 37 3 1 950 155709554 155710502 0.000000e+00 1531.0
16 TraesCS7D01G279900 chr3D 91.515 165 13 1 2178 2341 410670224 410670060 5.740000e-55 226.0
17 TraesCS7D01G279900 chr3D 90.533 169 16 0 2170 2338 211947740 211947572 2.060000e-54 224.0
18 TraesCS7D01G279900 chr3D 89.326 178 15 4 2170 2346 238999582 238999408 2.670000e-53 220.0
19 TraesCS7D01G279900 chr7A 95.698 953 37 4 1 949 714974588 714975540 0.000000e+00 1530.0
20 TraesCS7D01G279900 chr7A 92.584 863 24 19 2337 3174 303965209 303966056 0.000000e+00 1203.0
21 TraesCS7D01G279900 chr7A 91.256 892 31 24 3839 4699 303966705 303967580 0.000000e+00 1171.0
22 TraesCS7D01G279900 chr7A 93.116 799 28 11 1395 2179 303964422 303965207 0.000000e+00 1146.0
23 TraesCS7D01G279900 chr7A 83.599 878 95 33 1250 2101 674300918 674300064 0.000000e+00 778.0
24 TraesCS7D01G279900 chr7A 94.070 371 13 2 1058 1419 303963984 303964354 6.440000e-154 555.0
25 TraesCS7D01G279900 chr7A 81.906 619 48 28 3192 3782 303966115 303966697 1.120000e-126 464.0
26 TraesCS7D01G279900 chr7A 81.440 361 43 13 2977 3317 674299298 674298942 2.020000e-69 274.0
27 TraesCS7D01G279900 chr7A 91.667 120 8 2 3623 3742 674298926 674298809 1.270000e-36 165.0
28 TraesCS7D01G279900 chr7A 79.365 252 31 6 3809 4057 674298771 674298538 2.120000e-34 158.0
29 TraesCS7D01G279900 chr7A 82.759 174 15 4 4303 4467 674298534 674298367 2.140000e-29 141.0
30 TraesCS7D01G279900 chr7A 86.555 119 16 0 2710 2828 674299591 674299473 1.290000e-26 132.0
31 TraesCS7D01G279900 chr7A 92.958 71 2 1 1003 1073 303963903 303963970 3.630000e-17 100.0
32 TraesCS7D01G279900 chr7A 100.000 31 0 0 2908 2938 674299346 674299316 2.210000e-04 58.4
33 TraesCS7D01G279900 chrUn 95.684 950 39 2 1 949 96948889 96949837 0.000000e+00 1526.0
34 TraesCS7D01G279900 chrUn 88.987 454 43 4 4751 5198 330881546 330881094 6.440000e-154 555.0
35 TraesCS7D01G279900 chr7B 87.698 1260 65 36 950 2163 267243374 267242159 0.000000e+00 1386.0
36 TraesCS7D01G279900 chr7B 83.582 1005 44 52 3812 4723 267240668 267239692 0.000000e+00 830.0
37 TraesCS7D01G279900 chr7B 93.548 527 17 9 2664 3174 267241841 267241316 0.000000e+00 769.0
38 TraesCS7D01G279900 chr7B 82.805 884 89 32 1250 2101 650241567 650240715 0.000000e+00 732.0
39 TraesCS7D01G279900 chr7B 89.663 445 39 4 4751 5189 649149457 649149900 1.380000e-155 560.0
40 TraesCS7D01G279900 chr7B 89.438 445 40 4 4751 5189 649139648 649140091 6.440000e-154 555.0
41 TraesCS7D01G279900 chr7B 87.366 372 16 13 3208 3570 267241196 267240847 1.150000e-106 398.0
42 TraesCS7D01G279900 chr7B 91.700 253 10 3 2376 2621 267242097 267241849 1.960000e-89 340.0
43 TraesCS7D01G279900 chr7B 90.404 198 19 0 2977 3174 650239941 650239744 1.570000e-65 261.0
44 TraesCS7D01G279900 chr7B 81.928 249 28 4 3809 4057 650239303 650239072 1.620000e-45 195.0
45 TraesCS7D01G279900 chr7B 90.370 135 5 6 3655 3782 267240791 267240658 2.730000e-38 171.0
46 TraesCS7D01G279900 chr7B 89.831 118 10 2 3625 3741 650239468 650239352 3.550000e-32 150.0
47 TraesCS7D01G279900 chr7B 86.992 123 16 0 2710 2832 650240219 650240097 7.690000e-29 139.0
48 TraesCS7D01G279900 chr7B 87.097 93 8 1 3210 3302 650239671 650239583 1.010000e-17 102.0
49 TraesCS7D01G279900 chr7B 100.000 28 0 0 2911 2938 650239986 650239959 1.000000e-02 52.8
50 TraesCS7D01G279900 chr6B 90.435 460 33 5 4749 5198 48433256 48432798 3.790000e-166 595.0
51 TraesCS7D01G279900 chr2D 92.121 165 12 1 2175 2338 510229245 510229409 1.230000e-56 231.0
52 TraesCS7D01G279900 chr2D 90.964 166 15 0 2176 2341 478874294 478874129 2.060000e-54 224.0
53 TraesCS7D01G279900 chr2B 91.071 168 14 1 2172 2338 659017218 659017051 5.740000e-55 226.0
54 TraesCS7D01G279900 chr2B 90.533 169 14 2 2171 2338 704721183 704721350 7.420000e-54 222.0
55 TraesCS7D01G279900 chr2A 90.173 173 14 3 2171 2341 460903997 460904168 7.420000e-54 222.0
56 TraesCS7D01G279900 chr3B 100.000 29 0 0 4750 4778 490321019 490321047 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G279900 chr7D 271766399 271772087 5688 False 10506.000000 10506 100.000000 1 5689 1 chr7D.!!$F2 5688
1 TraesCS7D01G279900 chr7D 205799331 205800276 945 True 1572.000000 1572 96.632000 1 949 1 chr7D.!!$R1 948
2 TraesCS7D01G279900 chr7D 129976358 129977245 887 False 874.000000 874 84.468000 4750 5684 1 chr7D.!!$F1 934
3 TraesCS7D01G279900 chr7D 582501294 582502059 765 True 614.000000 614 81.876000 1250 2005 1 chr7D.!!$R2 755
4 TraesCS7D01G279900 chr5D 352836987 352837936 949 False 1620.000000 1620 97.474000 1 949 1 chr5D.!!$F2 948
5 TraesCS7D01G279900 chr5D 15970585 15971534 949 False 1587.000000 1587 96.842000 1 949 1 chr5D.!!$F1 948
6 TraesCS7D01G279900 chr4D 453138751 453139698 947 True 1546.000000 1546 96.101000 1 948 1 chr4D.!!$R1 947
7 TraesCS7D01G279900 chr1D 475799349 475800297 948 True 1537.000000 1537 95.895000 1 949 1 chr1D.!!$R1 948
8 TraesCS7D01G279900 chr3D 129456492 129457440 948 True 1531.000000 1531 95.794000 1 949 1 chr3D.!!$R1 948
9 TraesCS7D01G279900 chr3D 155709554 155710502 948 False 1531.000000 1531 95.794000 1 950 1 chr3D.!!$F1 949
10 TraesCS7D01G279900 chr7A 714974588 714975540 952 False 1530.000000 1530 95.698000 1 949 1 chr7A.!!$F1 948
11 TraesCS7D01G279900 chr7A 303963903 303967580 3677 False 773.166667 1203 90.981667 1003 4699 6 chr7A.!!$F2 3696
12 TraesCS7D01G279900 chr7A 674298367 674300918 2551 True 243.771429 778 86.483571 1250 4467 7 chr7A.!!$R1 3217
13 TraesCS7D01G279900 chrUn 96948889 96949837 948 False 1526.000000 1526 95.684000 1 949 1 chrUn.!!$F1 948
14 TraesCS7D01G279900 chr7B 267239692 267243374 3682 True 649.000000 1386 89.044000 950 4723 6 chr7B.!!$R1 3773
15 TraesCS7D01G279900 chr7B 650239072 650241567 2495 True 233.114286 732 88.436714 1250 4057 7 chr7B.!!$R2 2807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
795 802 0.179062 AGCAACGAGGAGCCATCATC 60.179 55.0 0.00 0.00 32.85 2.92 F
1245 1282 0.725118 GACGACGAGTCCTTGTCACG 60.725 60.0 13.67 5.21 42.71 4.35 F
1779 1995 0.873743 CTTCATCTTCCTCCTCGCGC 60.874 60.0 0.00 0.00 0.00 6.86 F
2155 2386 0.030369 ATTAACGAGCTAGCCCGTCG 59.970 55.0 24.94 22.01 38.13 5.12 F
3262 3819 0.108585 TGCAGGTTGACCAACTCCTC 59.891 55.0 12.02 0.00 40.94 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1659 1857 0.446222 CCATGAAGTTGCCGTAACCG 59.554 55.0 0.00 0.00 40.24 4.44 R
2152 2383 1.009078 TTAGCTGCATGCATCACGAC 58.991 50.0 22.97 6.84 45.94 4.34 R
3254 3811 0.034059 ACGCCAAGTCTGAGGAGTTG 59.966 55.0 6.60 6.60 46.72 3.16 R
3402 3988 0.109458 CGACAAGACCAATCGACGGA 60.109 55.0 9.64 0.00 38.10 4.69 R
5211 5945 0.178953 AGGCCATGTTCCAGCAAGTT 60.179 50.0 5.01 0.00 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 1.679139 GGATGATCGGCCACATTCAA 58.321 50.000 2.24 0.00 0.00 2.69
392 393 6.429692 CGGTATGATGAGACTTAGAGAGATGT 59.570 42.308 0.00 0.00 0.00 3.06
644 647 6.961131 TGGATATACGGATAATTACCCAAGGA 59.039 38.462 0.00 0.00 0.00 3.36
660 663 1.821088 AGGAGGAGTGTTGGGAAACT 58.179 50.000 0.00 0.00 0.00 2.66
667 670 2.989253 GTTGGGAAACTGGGGCCG 60.989 66.667 0.00 0.00 0.00 6.13
795 802 0.179062 AGCAACGAGGAGCCATCATC 60.179 55.000 0.00 0.00 32.85 2.92
830 837 9.412460 TGATCATTGATTAATAAAGCTGGTCTT 57.588 29.630 0.00 0.00 36.34 3.01
861 868 6.085555 TCTCTCTGTGTCATTTACTTTCGT 57.914 37.500 0.00 0.00 0.00 3.85
877 884 3.696281 TTCGTGTGTTCGACTACTTCA 57.304 42.857 0.00 0.00 39.58 3.02
1041 1049 6.447084 AGTTACCTGGATCTTTATTCTCCCAA 59.553 38.462 0.00 0.00 0.00 4.12
1077 1114 1.097232 TTACACGTCGTCATCCGGAT 58.903 50.000 12.38 12.38 37.11 4.18
1117 1154 1.744114 GCAAACGATCTCCCCTCCTTC 60.744 57.143 0.00 0.00 0.00 3.46
1143 1180 4.973396 TCGTTGTTGTACGACCTGTATAG 58.027 43.478 10.83 0.00 44.82 1.31
1245 1282 0.725118 GACGACGAGTCCTTGTCACG 60.725 60.000 13.67 5.21 42.71 4.35
1295 1332 2.259818 CTGTCCTGCGTCGCTCTT 59.740 61.111 19.50 0.00 0.00 2.85
1408 1463 9.587461 GAAAATTAGTGTTTCTCTTCTTCTTCG 57.413 33.333 0.00 0.00 33.14 3.79
1414 1469 4.976731 TGTTTCTCTTCTTCTTCGTCTTCG 59.023 41.667 0.00 0.00 38.55 3.79
1416 1471 4.407496 TCTCTTCTTCTTCGTCTTCGTC 57.593 45.455 0.00 0.00 38.33 4.20
1419 1474 4.537965 TCTTCTTCTTCGTCTTCGTCTTG 58.462 43.478 0.00 0.00 38.33 3.02
1420 1475 3.984508 TCTTCTTCGTCTTCGTCTTGT 57.015 42.857 0.00 0.00 38.33 3.16
1437 1601 3.137544 TCTTGTTGGTAACTCATGGTGGT 59.862 43.478 0.00 0.00 37.61 4.16
1502 1666 4.380945 TACCGTAGCCCCCACCGT 62.381 66.667 0.00 0.00 0.00 4.83
1575 1750 0.987294 AGTGAGTAGCCAGCACCAAT 59.013 50.000 0.00 0.00 33.14 3.16
1577 1752 1.740025 GTGAGTAGCCAGCACCAATTC 59.260 52.381 0.00 0.00 0.00 2.17
1581 1756 4.199310 GAGTAGCCAGCACCAATTCAATA 58.801 43.478 0.00 0.00 0.00 1.90
1583 1758 4.641989 AGTAGCCAGCACCAATTCAATAAG 59.358 41.667 0.00 0.00 0.00 1.73
1587 1767 5.011943 AGCCAGCACCAATTCAATAAGAAAA 59.988 36.000 0.00 0.00 40.22 2.29
1692 1890 3.164269 ATGGAGATCGGGCCGCTT 61.164 61.111 23.83 11.50 0.00 4.68
1779 1995 0.873743 CTTCATCTTCCTCCTCGCGC 60.874 60.000 0.00 0.00 0.00 6.86
2081 2312 2.276869 TCCGACATGGACACCTCAG 58.723 57.895 0.00 0.00 43.74 3.35
2110 2341 4.227754 AGCTTGGAGGTACACTACTAGAGA 59.772 45.833 0.00 0.00 35.17 3.10
2152 2383 0.387929 TCCATTAACGAGCTAGCCCG 59.612 55.000 17.79 17.79 0.00 6.13
2155 2386 0.030369 ATTAACGAGCTAGCCCGTCG 59.970 55.000 24.94 22.01 38.13 5.12
2179 2410 6.237675 CGTGATGCATGCAGCTAATATAGTAC 60.238 42.308 33.41 19.63 45.94 2.73
2180 2411 6.815641 GTGATGCATGCAGCTAATATAGTACT 59.184 38.462 33.41 8.94 45.94 2.73
2181 2412 7.009999 GTGATGCATGCAGCTAATATAGTACTC 59.990 40.741 33.41 17.44 45.94 2.59
2182 2413 5.724328 TGCATGCAGCTAATATAGTACTCC 58.276 41.667 18.46 0.00 45.94 3.85
2183 2414 5.112686 GCATGCAGCTAATATAGTACTCCC 58.887 45.833 14.21 0.00 41.15 4.30
2184 2415 5.105146 GCATGCAGCTAATATAGTACTCCCT 60.105 44.000 14.21 0.00 41.15 4.20
2185 2416 6.568869 CATGCAGCTAATATAGTACTCCCTC 58.431 44.000 0.00 0.00 0.00 4.30
2186 2417 5.017490 TGCAGCTAATATAGTACTCCCTCC 58.983 45.833 0.00 0.00 0.00 4.30
2187 2418 4.096682 GCAGCTAATATAGTACTCCCTCCG 59.903 50.000 0.00 0.00 0.00 4.63
2188 2419 5.254901 CAGCTAATATAGTACTCCCTCCGT 58.745 45.833 0.00 0.00 0.00 4.69
2189 2420 5.711036 CAGCTAATATAGTACTCCCTCCGTT 59.289 44.000 0.00 0.00 0.00 4.44
2190 2421 5.945191 AGCTAATATAGTACTCCCTCCGTTC 59.055 44.000 0.00 0.00 0.00 3.95
2191 2422 5.125257 GCTAATATAGTACTCCCTCCGTTCC 59.875 48.000 0.00 0.00 0.00 3.62
2192 2423 5.336491 AATATAGTACTCCCTCCGTTCCT 57.664 43.478 0.00 0.00 0.00 3.36
2193 2424 6.460103 AATATAGTACTCCCTCCGTTCCTA 57.540 41.667 0.00 0.00 0.00 2.94
2194 2425 4.803329 ATAGTACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
2195 2426 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2196 2427 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2197 2428 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2198 2429 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2199 2430 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
2200 2431 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
2201 2432 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2202 2433 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2203 2434 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2204 2435 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2205 2436 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2206 2437 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2207 2438 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2208 2439 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
2209 2440 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
2210 2441 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
2211 2442 8.202137 CCGTTCCTAAATATAAGTCTTTGGAGA 58.798 37.037 0.00 0.00 0.00 3.71
2212 2443 9.595823 CGTTCCTAAATATAAGTCTTTGGAGAA 57.404 33.333 0.00 0.00 32.66 2.87
2224 2455 7.707624 AGTCTTTGGAGAAATTGCATTATGA 57.292 32.000 0.00 0.00 32.66 2.15
2225 2456 8.125978 AGTCTTTGGAGAAATTGCATTATGAA 57.874 30.769 0.00 0.00 32.66 2.57
2226 2457 8.031277 AGTCTTTGGAGAAATTGCATTATGAAC 58.969 33.333 0.00 0.00 32.66 3.18
2227 2458 8.031277 GTCTTTGGAGAAATTGCATTATGAACT 58.969 33.333 0.00 0.00 32.66 3.01
2228 2459 9.241919 TCTTTGGAGAAATTGCATTATGAACTA 57.758 29.630 0.00 0.00 0.00 2.24
2229 2460 9.294030 CTTTGGAGAAATTGCATTATGAACTAC 57.706 33.333 0.00 0.00 0.00 2.73
2230 2461 7.936496 TGGAGAAATTGCATTATGAACTACA 57.064 32.000 0.00 0.00 0.00 2.74
2231 2462 8.523915 TGGAGAAATTGCATTATGAACTACAT 57.476 30.769 0.00 0.00 42.39 2.29
2232 2463 9.625747 TGGAGAAATTGCATTATGAACTACATA 57.374 29.630 0.00 0.00 40.07 2.29
2233 2464 9.884465 GGAGAAATTGCATTATGAACTACATAC 57.116 33.333 0.00 0.00 40.62 2.39
2236 2467 9.669353 GAAATTGCATTATGAACTACATACAGG 57.331 33.333 0.00 0.00 40.62 4.00
2237 2468 7.750229 ATTGCATTATGAACTACATACAGGG 57.250 36.000 0.00 0.00 40.62 4.45
2238 2469 5.063204 TGCATTATGAACTACATACAGGGC 58.937 41.667 0.00 0.00 40.62 5.19
2239 2470 5.063204 GCATTATGAACTACATACAGGGCA 58.937 41.667 0.00 0.00 40.62 5.36
2240 2471 5.530915 GCATTATGAACTACATACAGGGCAA 59.469 40.000 0.00 0.00 40.62 4.52
2241 2472 6.039270 GCATTATGAACTACATACAGGGCAAA 59.961 38.462 0.00 0.00 40.62 3.68
2242 2473 7.416213 GCATTATGAACTACATACAGGGCAAAA 60.416 37.037 0.00 0.00 40.62 2.44
2243 2474 8.632679 CATTATGAACTACATACAGGGCAAAAT 58.367 33.333 0.00 0.00 40.62 1.82
2244 2475 5.895636 TGAACTACATACAGGGCAAAATG 57.104 39.130 0.00 0.00 0.00 2.32
2245 2476 5.565509 TGAACTACATACAGGGCAAAATGA 58.434 37.500 0.00 0.00 0.00 2.57
2246 2477 5.647658 TGAACTACATACAGGGCAAAATGAG 59.352 40.000 0.00 0.00 0.00 2.90
2247 2478 5.179452 ACTACATACAGGGCAAAATGAGT 57.821 39.130 0.00 0.00 0.00 3.41
2248 2479 4.943705 ACTACATACAGGGCAAAATGAGTG 59.056 41.667 0.00 0.00 0.00 3.51
2249 2480 4.032960 ACATACAGGGCAAAATGAGTGA 57.967 40.909 0.00 0.00 0.00 3.41
2250 2481 4.406456 ACATACAGGGCAAAATGAGTGAA 58.594 39.130 0.00 0.00 0.00 3.18
2251 2482 5.018809 ACATACAGGGCAAAATGAGTGAAT 58.981 37.500 0.00 0.00 0.00 2.57
2252 2483 5.126061 ACATACAGGGCAAAATGAGTGAATC 59.874 40.000 0.00 0.00 0.00 2.52
2253 2484 3.771216 ACAGGGCAAAATGAGTGAATCT 58.229 40.909 0.00 0.00 0.00 2.40
2254 2485 4.922206 ACAGGGCAAAATGAGTGAATCTA 58.078 39.130 0.00 0.00 0.00 1.98
2255 2486 4.702131 ACAGGGCAAAATGAGTGAATCTAC 59.298 41.667 0.00 0.00 0.00 2.59
2256 2487 4.701651 CAGGGCAAAATGAGTGAATCTACA 59.298 41.667 0.00 0.00 0.00 2.74
2257 2488 5.359009 CAGGGCAAAATGAGTGAATCTACAT 59.641 40.000 0.00 0.00 0.00 2.29
2258 2489 5.954150 AGGGCAAAATGAGTGAATCTACATT 59.046 36.000 0.00 0.00 34.99 2.71
2259 2490 6.438425 AGGGCAAAATGAGTGAATCTACATTT 59.562 34.615 0.00 0.00 42.25 2.32
2260 2491 7.615365 AGGGCAAAATGAGTGAATCTACATTTA 59.385 33.333 0.00 0.00 40.48 1.40
2261 2492 8.250332 GGGCAAAATGAGTGAATCTACATTTAA 58.750 33.333 0.00 0.00 40.48 1.52
2262 2493 9.638239 GGCAAAATGAGTGAATCTACATTTAAA 57.362 29.630 0.00 0.00 40.48 1.52
2335 2566 9.780186 AAGATTTATATTTAGAAACGGAGGGAG 57.220 33.333 0.00 0.00 0.00 4.30
2430 2705 0.611340 ACCAGAGGACTCCGTGGTAC 60.611 60.000 19.01 0.00 41.69 3.34
2431 2706 0.323542 CCAGAGGACTCCGTGGTACT 60.324 60.000 10.21 0.00 32.27 2.73
2432 2707 1.064906 CCAGAGGACTCCGTGGTACTA 60.065 57.143 10.21 0.00 29.27 1.82
2476 2751 8.684655 CGTATTGTGCTTGCTGAATTAATAATG 58.315 33.333 0.00 0.00 0.00 1.90
2602 2936 4.799917 GCGACAGGTAGAGAAAAACCTTCT 60.800 45.833 0.00 0.00 43.77 2.85
2608 2942 7.883833 ACAGGTAGAGAAAAACCTTCTAATTCC 59.116 37.037 0.00 0.00 43.77 3.01
2622 2956 2.572191 AATTCCGTGCGATCGAGTTA 57.428 45.000 21.57 0.00 0.00 2.24
2623 2957 2.572191 ATTCCGTGCGATCGAGTTAA 57.428 45.000 21.57 6.06 0.00 2.01
2627 2961 1.060122 CCGTGCGATCGAGTTAAAACC 59.940 52.381 21.57 0.00 0.00 3.27
2628 2962 1.266211 CGTGCGATCGAGTTAAAACCG 60.266 52.381 21.57 2.61 0.00 4.44
2629 2963 1.987770 GTGCGATCGAGTTAAAACCGA 59.012 47.619 21.57 8.24 36.54 4.69
2630 2964 1.987770 TGCGATCGAGTTAAAACCGAC 59.012 47.619 21.57 0.00 35.54 4.79
2636 2970 5.517770 CGATCGAGTTAAAACCGACCTTTAT 59.482 40.000 10.26 0.00 35.54 1.40
2637 2971 6.692681 CGATCGAGTTAAAACCGACCTTTATA 59.307 38.462 10.26 0.00 35.54 0.98
2799 3196 4.477975 GACCTCGAGTCGGCCGTG 62.478 72.222 27.15 13.79 35.30 4.94
2841 3274 3.610669 CGCATCCTCCCTCCCTCG 61.611 72.222 0.00 0.00 0.00 4.63
2842 3275 2.444895 GCATCCTCCCTCCCTCGT 60.445 66.667 0.00 0.00 0.00 4.18
2843 3276 2.801631 GCATCCTCCCTCCCTCGTG 61.802 68.421 0.00 0.00 0.00 4.35
2871 3321 2.813061 CCTCTGCTTTGTTTGTGTTGG 58.187 47.619 0.00 0.00 0.00 3.77
3117 3580 2.284995 ACCTGGGGAGAGCAGTCC 60.285 66.667 0.00 0.00 35.64 3.85
3174 3637 1.813513 AGCCAAGAATCAACGAGGTG 58.186 50.000 0.00 0.00 0.00 4.00
3221 3778 4.201920 GGCTTACTGTAATTAACCTGCTGC 60.202 45.833 0.00 0.00 0.00 5.25
3229 3786 3.819564 ATTAACCTGCTGCGAGTGATA 57.180 42.857 0.00 0.00 0.00 2.15
3230 3787 3.603158 TTAACCTGCTGCGAGTGATAA 57.397 42.857 0.00 0.00 0.00 1.75
3231 3788 2.698855 AACCTGCTGCGAGTGATAAT 57.301 45.000 0.00 0.00 0.00 1.28
3232 3789 1.945387 ACCTGCTGCGAGTGATAATG 58.055 50.000 0.00 0.00 0.00 1.90
3254 3811 2.690778 GGACGCATGCAGGTTGACC 61.691 63.158 19.57 6.88 0.00 4.02
3256 3813 1.514678 GACGCATGCAGGTTGACCAA 61.515 55.000 19.57 0.00 38.89 3.67
3262 3819 0.108585 TGCAGGTTGACCAACTCCTC 59.891 55.000 12.02 0.00 40.94 3.71
3264 3821 1.879796 GCAGGTTGACCAACTCCTCAG 60.880 57.143 12.02 0.00 40.94 3.35
3358 3939 2.379634 TTGATCCGTGCGCGTCTTG 61.380 57.895 19.61 2.85 36.15 3.02
3403 3989 3.092081 GCATTTGTTGCCTGTCGTC 57.908 52.632 0.00 0.00 46.15 4.20
3405 3991 0.110238 CATTTGTTGCCTGTCGTCCG 60.110 55.000 0.00 0.00 0.00 4.79
3406 3992 0.534203 ATTTGTTGCCTGTCGTCCGT 60.534 50.000 0.00 0.00 0.00 4.69
3407 3993 1.155424 TTTGTTGCCTGTCGTCCGTC 61.155 55.000 0.00 0.00 0.00 4.79
3408 3994 3.103911 GTTGCCTGTCGTCCGTCG 61.104 66.667 0.00 0.00 41.41 5.12
3425 4011 2.160013 CGTCGATTGGTCTTGTCGTTTC 60.160 50.000 0.00 0.00 36.77 2.78
3434 4020 3.063045 GGTCTTGTCGTTTCGTTTTGACT 59.937 43.478 0.00 0.00 32.64 3.41
3458 4044 0.250295 AGTGTTGTATGCTGCACGGT 60.250 50.000 3.57 0.00 36.99 4.83
3506 4092 1.002134 CCTGACATGTGACACCCCC 60.002 63.158 1.15 0.00 0.00 5.40
3510 4096 1.228552 ACATGTGACACCCCCAAGC 60.229 57.895 0.00 0.00 0.00 4.01
3517 4103 2.283173 CACCCCCAAGCTTGTCCC 60.283 66.667 24.35 0.00 0.00 4.46
3584 4184 1.203287 CACTGGTCGCAGAATCTCTCA 59.797 52.381 0.00 0.00 39.69 3.27
3592 4192 6.127451 TGGTCGCAGAATCTCTCAACTTAATA 60.127 38.462 0.00 0.00 39.69 0.98
3631 4231 9.926751 CTCTACTATGATAAACTGCATTTTGTG 57.073 33.333 11.94 0.00 0.00 3.33
3650 4250 3.940852 TGTGATTGAGATCCAACCAATCG 59.059 43.478 16.19 0.00 45.37 3.34
3657 4258 2.028476 AGATCCAACCAATCGACGTTGA 60.028 45.455 18.52 8.21 41.53 3.18
3661 4262 2.159572 CCAACCAATCGACGTTGATTCC 60.160 50.000 25.11 0.00 41.53 3.01
3782 4398 3.550842 GCAAGGGCAAGTGAGTTTAACTG 60.551 47.826 0.93 0.00 40.72 3.16
3783 4399 3.577805 AGGGCAAGTGAGTTTAACTGT 57.422 42.857 0.93 0.00 0.00 3.55
3784 4400 3.898482 AGGGCAAGTGAGTTTAACTGTT 58.102 40.909 0.93 0.00 0.00 3.16
3786 4402 4.338400 AGGGCAAGTGAGTTTAACTGTTTC 59.662 41.667 0.93 0.00 0.00 2.78
3787 4403 4.499188 GGGCAAGTGAGTTTAACTGTTTCC 60.499 45.833 0.93 0.00 0.00 3.13
3789 4405 4.788521 GCAAGTGAGTTTAACTGTTTCCCG 60.789 45.833 0.93 0.00 0.00 5.14
3790 4406 2.876550 AGTGAGTTTAACTGTTTCCCGC 59.123 45.455 0.93 0.00 0.00 6.13
3791 4407 2.614983 GTGAGTTTAACTGTTTCCCGCA 59.385 45.455 0.93 0.00 0.00 5.69
3792 4408 3.065648 GTGAGTTTAACTGTTTCCCGCAA 59.934 43.478 0.93 0.00 0.00 4.85
3793 4409 3.695060 TGAGTTTAACTGTTTCCCGCAAA 59.305 39.130 0.93 0.00 0.00 3.68
3794 4410 4.158025 TGAGTTTAACTGTTTCCCGCAAAA 59.842 37.500 0.93 0.00 0.00 2.44
3795 4411 5.074584 AGTTTAACTGTTTCCCGCAAAAA 57.925 34.783 0.00 0.00 0.00 1.94
3832 4448 4.214971 AGTGAGTTCAACTGTTGATGCATC 59.785 41.667 22.60 20.14 39.84 3.91
3992 4611 5.509840 CCTGAAATTCTACTGGATACTCGGG 60.510 48.000 0.00 0.00 37.61 5.14
4077 4698 0.608035 ACCATACTGTTGGCGTTGGG 60.608 55.000 8.35 0.00 40.68 4.12
4078 4699 0.608035 CCATACTGTTGGCGTTGGGT 60.608 55.000 0.00 0.00 0.00 4.51
4085 4706 2.267351 TTGGCGTTGGGTGAGCATG 61.267 57.895 0.00 0.00 0.00 4.06
4112 4733 3.613299 TGAATGCGCAACTTAATGCAATG 59.387 39.130 17.11 0.00 46.76 2.82
4276 4940 3.665544 GCAGCAGGCAGAAACAAAA 57.334 47.368 0.00 0.00 43.97 2.44
4277 4941 1.211743 GCAGCAGGCAGAAACAAAAC 58.788 50.000 0.00 0.00 43.97 2.43
4278 4942 1.471327 GCAGCAGGCAGAAACAAAACA 60.471 47.619 0.00 0.00 43.97 2.83
4279 4943 2.466846 CAGCAGGCAGAAACAAAACAG 58.533 47.619 0.00 0.00 0.00 3.16
4383 5083 7.466746 AAATCTAATGCTCCACTTTTTGCTA 57.533 32.000 0.00 0.00 0.00 3.49
4478 5198 1.261619 GAAACAAGACGCTGACACCAG 59.738 52.381 0.00 0.00 43.22 4.00
4587 5316 9.823647 TGAGAAAACAGAGATAAATGGATAGAC 57.176 33.333 0.00 0.00 0.00 2.59
4590 5319 8.970859 AAAACAGAGATAAATGGATAGACAGG 57.029 34.615 0.00 0.00 0.00 4.00
4637 5369 4.715983 GCTGGTGCAACTGTGTTG 57.284 55.556 10.57 6.12 39.41 3.33
4638 5370 1.809207 GCTGGTGCAACTGTGTTGT 59.191 52.632 10.57 0.00 39.41 3.32
4639 5371 0.173255 GCTGGTGCAACTGTGTTGTT 59.827 50.000 10.57 0.00 39.41 2.83
4723 5455 8.398743 TCTCCTCACCACATCTATACCATAATA 58.601 37.037 0.00 0.00 0.00 0.98
4724 5456 8.966155 TCCTCACCACATCTATACCATAATAA 57.034 34.615 0.00 0.00 0.00 1.40
4725 5457 9.560860 TCCTCACCACATCTATACCATAATAAT 57.439 33.333 0.00 0.00 0.00 1.28
4726 5458 9.823647 CCTCACCACATCTATACCATAATAATC 57.176 37.037 0.00 0.00 0.00 1.75
4741 5473 9.567702 ACCATAATAATCTATTCTAGAGGCCTT 57.432 33.333 6.77 0.00 38.38 4.35
4747 5479 6.673839 ATCTATTCTAGAGGCCTTACAACC 57.326 41.667 6.77 0.00 38.38 3.77
4748 5480 5.778542 TCTATTCTAGAGGCCTTACAACCT 58.221 41.667 6.77 0.00 39.65 3.50
4754 5486 3.440415 GCCTTACAACCTGGGCGC 61.440 66.667 0.00 0.00 35.08 6.53
4800 5532 4.642542 GCCTCGCCGGTCGTATCC 62.643 72.222 16.00 2.93 39.67 2.59
4805 5537 2.342648 GCCGGTCGTATCCCATCC 59.657 66.667 1.90 0.00 0.00 3.51
4809 5541 0.596600 CGGTCGTATCCCATCCGTTG 60.597 60.000 0.00 0.00 36.99 4.10
4835 5567 2.636299 CCCAGTTGTAACCGTTGGG 58.364 57.895 6.26 6.26 42.26 4.12
4850 5582 3.190535 CCGTTGGGTCAGTATCCTTTTTG 59.809 47.826 0.00 0.00 0.00 2.44
4856 5588 6.843752 TGGGTCAGTATCCTTTTTGTTCTTA 58.156 36.000 0.00 0.00 0.00 2.10
4876 5608 1.286880 GGCATGCAAAGCTGAACGT 59.713 52.632 21.36 0.00 0.00 3.99
4883 5615 4.725556 TGCAAAGCTGAACGTACTAAAG 57.274 40.909 0.00 0.00 0.00 1.85
4887 5620 5.689819 CAAAGCTGAACGTACTAAAGCAAT 58.310 37.500 9.54 0.00 36.32 3.56
4892 5625 5.790495 GCTGAACGTACTAAAGCAATCAAAG 59.210 40.000 0.00 0.00 34.01 2.77
4927 5660 1.811266 CGAGGCAACCCGTCATCTG 60.811 63.158 0.00 0.00 35.76 2.90
4928 5661 2.045926 AGGCAACCCGTCATCTGC 60.046 61.111 0.00 0.00 35.76 4.26
4929 5662 3.499737 GGCAACCCGTCATCTGCG 61.500 66.667 0.00 0.00 35.60 5.18
4930 5663 2.742372 GCAACCCGTCATCTGCGT 60.742 61.111 0.00 0.00 0.00 5.24
4931 5664 2.740714 GCAACCCGTCATCTGCGTC 61.741 63.158 0.00 0.00 0.00 5.19
4932 5665 1.374125 CAACCCGTCATCTGCGTCA 60.374 57.895 0.00 0.00 0.00 4.35
4933 5666 0.948623 CAACCCGTCATCTGCGTCAA 60.949 55.000 0.00 0.00 0.00 3.18
4934 5667 0.250124 AACCCGTCATCTGCGTCAAA 60.250 50.000 0.00 0.00 0.00 2.69
4935 5668 0.949105 ACCCGTCATCTGCGTCAAAC 60.949 55.000 0.00 0.00 0.00 2.93
4936 5669 0.948623 CCCGTCATCTGCGTCAAACA 60.949 55.000 0.00 0.00 0.00 2.83
4937 5670 0.163788 CCGTCATCTGCGTCAAACAC 59.836 55.000 0.00 0.00 0.00 3.32
4981 5714 0.708918 GTTGCTTGTCGACTCGCTAC 59.291 55.000 23.25 21.79 0.00 3.58
4982 5715 0.728129 TTGCTTGTCGACTCGCTACG 60.728 55.000 23.25 2.37 0.00 3.51
4987 5720 1.276250 GTCGACTCGCTACGCCTAG 59.724 63.158 8.70 0.00 0.00 3.02
5094 5828 3.369400 CCATCCGCCGGCACAAAA 61.369 61.111 28.98 6.45 0.00 2.44
5148 5882 3.219198 GAATGCCCCATCCACCGC 61.219 66.667 0.00 0.00 0.00 5.68
5179 5913 1.302431 TTGTCACCCTGCATCACCG 60.302 57.895 0.00 0.00 0.00 4.94
5181 5915 1.302511 GTCACCCTGCATCACCGTT 60.303 57.895 0.00 0.00 0.00 4.44
5191 5925 1.535860 GCATCACCGTTGCAACTTGTT 60.536 47.619 26.09 14.91 39.90 2.83
5196 5930 1.200484 ACCGTTGCAACTTGTTTTCGT 59.800 42.857 26.09 7.18 0.00 3.85
5198 5932 2.510874 CGTTGCAACTTGTTTTCGTCA 58.489 42.857 26.09 0.00 0.00 4.35
5204 5938 3.680789 CAACTTGTTTTCGTCACCTCAC 58.319 45.455 0.00 0.00 0.00 3.51
5211 5945 1.370609 TTCGTCACCTCACGCAAAAA 58.629 45.000 0.00 0.00 39.74 1.94
5229 5963 0.681175 AAACTTGCTGGAACATGGCC 59.319 50.000 0.00 0.00 38.20 5.36
5230 5964 0.178953 AACTTGCTGGAACATGGCCT 60.179 50.000 3.32 0.00 38.20 5.19
5231 5965 0.896940 ACTTGCTGGAACATGGCCTG 60.897 55.000 3.32 2.01 38.20 4.85
5240 5974 2.360350 CATGGCCTGTCGCTGGTT 60.360 61.111 3.32 0.00 37.74 3.67
5244 5978 2.281484 GCCTGTCGCTGGTTCCAA 60.281 61.111 0.00 0.00 0.00 3.53
5264 5998 1.067635 ACAAATCATCTTGCCGGTTGC 60.068 47.619 1.90 0.00 41.77 4.17
5275 6009 4.389576 CGGTTGCAGCTTGCCGTC 62.390 66.667 12.59 0.00 44.23 4.79
5276 6010 2.980233 GGTTGCAGCTTGCCGTCT 60.980 61.111 0.00 0.00 44.23 4.18
5277 6011 1.671054 GGTTGCAGCTTGCCGTCTA 60.671 57.895 0.00 0.00 44.23 2.59
5278 6012 1.497722 GTTGCAGCTTGCCGTCTAC 59.502 57.895 5.82 0.00 44.23 2.59
5279 6013 0.951040 GTTGCAGCTTGCCGTCTACT 60.951 55.000 5.82 0.00 44.23 2.57
5280 6014 0.670546 TTGCAGCTTGCCGTCTACTC 60.671 55.000 5.82 0.00 44.23 2.59
5281 6015 1.079819 GCAGCTTGCCGTCTACTCA 60.080 57.895 0.00 0.00 37.42 3.41
5282 6016 1.080995 GCAGCTTGCCGTCTACTCAG 61.081 60.000 0.00 0.00 37.42 3.35
5283 6017 0.244994 CAGCTTGCCGTCTACTCAGT 59.755 55.000 0.00 0.00 0.00 3.41
5284 6018 0.528470 AGCTTGCCGTCTACTCAGTC 59.472 55.000 0.00 0.00 0.00 3.51
5285 6019 0.458716 GCTTGCCGTCTACTCAGTCC 60.459 60.000 0.00 0.00 0.00 3.85
5303 6037 1.064463 TCCCAGCAAATCATCTCCCAC 60.064 52.381 0.00 0.00 0.00 4.61
5304 6038 1.019673 CCAGCAAATCATCTCCCACG 58.980 55.000 0.00 0.00 0.00 4.94
5321 6055 6.604396 TCTCCCACGTAGTATTTTGTCATCTA 59.396 38.462 0.00 0.00 41.61 1.98
5323 6057 6.379133 TCCCACGTAGTATTTTGTCATCTAGT 59.621 38.462 0.00 0.00 41.61 2.57
5342 6076 3.157087 AGTCGGTCCAAGCAAAAATCAT 58.843 40.909 0.00 0.00 0.00 2.45
5344 6078 4.396166 AGTCGGTCCAAGCAAAAATCATAG 59.604 41.667 0.00 0.00 0.00 2.23
5349 6083 6.089417 CGGTCCAAGCAAAAATCATAGAAAAC 59.911 38.462 0.00 0.00 0.00 2.43
5357 6091 6.292596 GCAAAAATCATAGAAAACGGTTGCAA 60.293 34.615 0.00 0.00 37.99 4.08
5377 6111 2.559440 ACTTAGGTAGTCGCTAGTCGG 58.441 52.381 6.71 0.00 39.05 4.79
5385 6119 1.135344 AGTCGCTAGTCGGAGCTTTTC 60.135 52.381 6.71 0.00 40.51 2.29
5402 6136 0.183492 TTCCTTCAGCCAGTTGCAGT 59.817 50.000 0.00 0.00 44.83 4.40
5403 6137 1.055849 TCCTTCAGCCAGTTGCAGTA 58.944 50.000 0.00 0.00 44.83 2.74
5404 6138 1.419762 TCCTTCAGCCAGTTGCAGTAA 59.580 47.619 0.00 0.00 44.83 2.24
5405 6139 2.040278 TCCTTCAGCCAGTTGCAGTAAT 59.960 45.455 0.00 0.00 44.83 1.89
5406 6140 2.163010 CCTTCAGCCAGTTGCAGTAATG 59.837 50.000 0.00 0.00 44.83 1.90
5407 6141 1.167851 TCAGCCAGTTGCAGTAATGC 58.832 50.000 8.51 8.51 44.83 3.56
5408 6142 0.883153 CAGCCAGTTGCAGTAATGCA 59.117 50.000 14.87 14.87 44.83 3.96
5409 6143 1.135489 CAGCCAGTTGCAGTAATGCAG 60.135 52.381 18.18 7.82 46.21 4.41
5420 6154 4.033932 TGCAGTAATGCAGCTTATAACACG 59.966 41.667 14.87 0.00 40.23 4.49
5421 6155 4.552767 GCAGTAATGCAGCTTATAACACGG 60.553 45.833 10.86 0.00 34.41 4.94
5422 6156 4.808895 CAGTAATGCAGCTTATAACACGGA 59.191 41.667 0.00 0.00 0.00 4.69
5424 6158 2.753055 TGCAGCTTATAACACGGACA 57.247 45.000 0.00 0.00 0.00 4.02
5431 6165 3.991773 GCTTATAACACGGACAGTCACAA 59.008 43.478 2.17 0.00 0.00 3.33
5433 6167 2.228138 TAACACGGACAGTCACAACC 57.772 50.000 2.17 0.00 0.00 3.77
5437 6171 1.066752 CGGACAGTCACAACCGTCA 59.933 57.895 2.17 0.00 40.42 4.35
5442 6176 1.138069 ACAGTCACAACCGTCACATCA 59.862 47.619 0.00 0.00 0.00 3.07
5450 6184 0.034896 ACCGTCACATCACCTTCACC 59.965 55.000 0.00 0.00 0.00 4.02
5451 6185 0.034756 CCGTCACATCACCTTCACCA 59.965 55.000 0.00 0.00 0.00 4.17
5465 6199 0.181114 TCACCAGTTGCAGCTTCTGT 59.819 50.000 0.00 0.00 33.43 3.41
5470 6204 2.349817 CCAGTTGCAGCTTCTGTAAACG 60.350 50.000 0.00 0.00 37.77 3.60
5473 6207 1.148310 TGCAGCTTCTGTAAACGCTC 58.852 50.000 0.00 0.00 33.43 5.03
5487 6221 3.130835 CGCTCGTCGTAGCTTCTAC 57.869 57.895 12.62 0.00 40.49 2.59
5494 6228 2.670229 CGTCGTAGCTTCTACAAAGCCA 60.670 50.000 6.17 0.00 44.01 4.75
5495 6229 2.666994 GTCGTAGCTTCTACAAAGCCAC 59.333 50.000 6.17 2.57 44.01 5.01
5498 6232 0.955919 AGCTTCTACAAAGCCACGGC 60.956 55.000 0.00 0.00 44.01 5.68
5508 6242 2.964978 GCCACGGCTGATGCTTTT 59.035 55.556 0.00 0.00 39.59 2.27
5548 6282 2.749044 CTGTGCATTGGCCGCTCT 60.749 61.111 0.00 0.00 40.13 4.09
5555 6289 3.258228 ATTGGCCGCTCTGCTGTGA 62.258 57.895 0.00 0.00 0.00 3.58
5565 6299 2.792290 CTGCTGTGATTCGCCGTCG 61.792 63.158 0.00 0.00 0.00 5.12
5579 6313 4.719369 GTCGCCGGAGCACGTCTT 62.719 66.667 5.05 0.00 42.24 3.01
5594 6328 1.019805 GTCTTTGTACCGGCTGGCTC 61.020 60.000 12.89 5.49 39.70 4.70
5612 6346 3.818787 GCTGGCCATGGTCGCTTG 61.819 66.667 20.96 9.35 0.00 4.01
5629 6363 2.213499 CTTGAGCGGATTCCCATGTAC 58.787 52.381 0.00 0.00 0.00 2.90
5640 6374 4.599720 TTCCCATGTACAAATCCCATGA 57.400 40.909 0.00 0.00 38.56 3.07
5643 6377 3.373001 CCCATGTACAAATCCCATGACCT 60.373 47.826 0.00 0.00 38.56 3.85
5644 6378 3.633525 CCATGTACAAATCCCATGACCTG 59.366 47.826 0.00 0.00 38.56 4.00
5649 6383 2.225091 ACAAATCCCATGACCTGCTTGA 60.225 45.455 0.00 0.00 0.00 3.02
5662 6396 1.710339 GCTTGAAGCATCCGTCGAC 59.290 57.895 13.09 5.18 41.89 4.20
5684 6421 4.393990 ACTGTCGTCGTATAATCTCACACA 59.606 41.667 0.00 0.00 0.00 3.72
5685 6422 5.066117 ACTGTCGTCGTATAATCTCACACAT 59.934 40.000 0.00 0.00 0.00 3.21
5686 6423 5.270853 TGTCGTCGTATAATCTCACACATG 58.729 41.667 0.00 0.00 0.00 3.21
5687 6424 4.675565 GTCGTCGTATAATCTCACACATGG 59.324 45.833 0.00 0.00 0.00 3.66
5688 6425 4.337274 TCGTCGTATAATCTCACACATGGT 59.663 41.667 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 0.473755 TGTTCAGCCCACATGTCTGT 59.526 50.000 11.56 0.00 35.44 3.41
185 186 3.045634 TCTTCACATAACCCATCCGGAT 58.954 45.455 12.38 12.38 34.64 4.18
189 190 5.104485 AGGTTACTCTTCACATAACCCATCC 60.104 44.000 8.44 0.00 46.10 3.51
392 393 2.999928 AGTTTCTCCCCCTGAACCTTA 58.000 47.619 0.00 0.00 0.00 2.69
564 567 7.707624 AAAAATATGGAGAAAGAGCACATGA 57.292 32.000 0.00 0.00 0.00 3.07
598 601 4.559153 CATGCCTCAAAACTCCGAAAAAT 58.441 39.130 0.00 0.00 0.00 1.82
644 647 0.478507 CCCAGTTTCCCAACACTCCT 59.521 55.000 0.00 0.00 35.05 3.69
861 868 5.762825 AGTAGTTGAAGTAGTCGAACACA 57.237 39.130 0.00 0.00 0.00 3.72
1077 1114 2.226330 CGTCTGTTTGTTGGAATCCCA 58.774 47.619 0.00 0.00 41.64 4.37
1117 1154 3.513406 TCGTACAACAACGACGCG 58.487 55.556 3.53 3.53 46.29 6.01
1295 1332 2.043852 GAGGGCAGGACGAGGAGA 60.044 66.667 0.00 0.00 0.00 3.71
1349 1404 2.171448 GACTTGCATGTATCCCCACTCT 59.829 50.000 5.05 0.00 0.00 3.24
1408 1463 4.365723 TGAGTTACCAACAAGACGAAGAC 58.634 43.478 0.00 0.00 0.00 3.01
1414 1469 3.502211 CCACCATGAGTTACCAACAAGAC 59.498 47.826 0.00 0.00 0.00 3.01
1416 1471 3.253188 CACCACCATGAGTTACCAACAAG 59.747 47.826 0.00 0.00 0.00 3.16
1419 1474 2.552315 CACACCACCATGAGTTACCAAC 59.448 50.000 0.00 0.00 0.00 3.77
1420 1475 2.488167 CCACACCACCATGAGTTACCAA 60.488 50.000 0.00 0.00 0.00 3.67
1437 1601 4.642437 TGCAGAGTTCAATTGTTAACCACA 59.358 37.500 5.13 0.00 0.00 4.17
1502 1666 2.964925 GCTGTGCCGTTGTCGACA 60.965 61.111 15.76 15.76 39.71 4.35
1556 1720 0.987294 ATTGGTGCTGGCTACTCACT 59.013 50.000 0.00 0.00 0.00 3.41
1605 1790 4.132336 GCCAGATTGAATCAGTATGCTCA 58.868 43.478 8.03 0.00 34.76 4.26
1659 1857 0.446222 CCATGAAGTTGCCGTAACCG 59.554 55.000 0.00 0.00 40.24 4.44
1692 1890 2.741092 GGCTTGAGGTCCGTGTCA 59.259 61.111 0.00 0.00 0.00 3.58
1796 2020 4.237349 ACTCAAAAACTAACCGGCAATG 57.763 40.909 0.00 0.00 0.00 2.82
2110 2341 8.170061 TGGATTTAATAGGCTATTATTGGCTGT 58.830 33.333 23.72 3.53 40.59 4.40
2152 2383 1.009078 TTAGCTGCATGCATCACGAC 58.991 50.000 22.97 6.84 45.94 4.34
2155 2386 6.815641 AGTACTATATTAGCTGCATGCATCAC 59.184 38.462 22.97 13.89 45.94 3.06
2179 2410 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2180 2411 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2181 2412 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2182 2413 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
2183 2414 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
2184 2415 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
2185 2416 8.202137 TCTCCAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
2186 2417 9.595823 TTCTCCAAAGACTTATATTTAGGAACG 57.404 33.333 0.00 0.00 0.00 3.95
2198 2429 9.241919 TCATAATGCAATTTCTCCAAAGACTTA 57.758 29.630 0.00 0.00 37.87 2.24
2199 2430 8.125978 TCATAATGCAATTTCTCCAAAGACTT 57.874 30.769 0.00 0.00 37.87 3.01
2200 2431 7.707624 TCATAATGCAATTTCTCCAAAGACT 57.292 32.000 0.00 0.00 37.87 3.24
2201 2432 8.031277 AGTTCATAATGCAATTTCTCCAAAGAC 58.969 33.333 0.00 0.00 37.87 3.01
2202 2433 8.125978 AGTTCATAATGCAATTTCTCCAAAGA 57.874 30.769 0.00 0.00 37.87 2.52
2203 2434 9.294030 GTAGTTCATAATGCAATTTCTCCAAAG 57.706 33.333 0.00 0.00 37.87 2.77
2204 2435 8.801299 TGTAGTTCATAATGCAATTTCTCCAAA 58.199 29.630 0.00 0.00 37.87 3.28
2205 2436 8.347004 TGTAGTTCATAATGCAATTTCTCCAA 57.653 30.769 0.00 0.00 37.87 3.53
2206 2437 7.936496 TGTAGTTCATAATGCAATTTCTCCA 57.064 32.000 0.00 0.00 37.87 3.86
2207 2438 9.884465 GTATGTAGTTCATAATGCAATTTCTCC 57.116 33.333 0.00 0.00 40.21 3.71
2210 2441 9.669353 CCTGTATGTAGTTCATAATGCAATTTC 57.331 33.333 0.00 0.00 40.21 2.17
2211 2442 8.632679 CCCTGTATGTAGTTCATAATGCAATTT 58.367 33.333 0.00 0.00 40.21 1.82
2212 2443 7.255590 GCCCTGTATGTAGTTCATAATGCAATT 60.256 37.037 0.00 0.00 40.21 2.32
2213 2444 6.207417 GCCCTGTATGTAGTTCATAATGCAAT 59.793 38.462 0.00 0.00 40.21 3.56
2214 2445 5.530915 GCCCTGTATGTAGTTCATAATGCAA 59.469 40.000 0.00 0.00 40.21 4.08
2215 2446 5.063204 GCCCTGTATGTAGTTCATAATGCA 58.937 41.667 0.00 0.00 40.21 3.96
2216 2447 5.063204 TGCCCTGTATGTAGTTCATAATGC 58.937 41.667 0.00 0.00 40.21 3.56
2217 2448 7.566760 TTTGCCCTGTATGTAGTTCATAATG 57.433 36.000 0.00 0.00 40.21 1.90
2218 2449 8.632679 CATTTTGCCCTGTATGTAGTTCATAAT 58.367 33.333 0.00 0.00 40.21 1.28
2219 2450 7.831690 TCATTTTGCCCTGTATGTAGTTCATAA 59.168 33.333 0.00 0.00 40.21 1.90
2220 2451 7.342581 TCATTTTGCCCTGTATGTAGTTCATA 58.657 34.615 0.00 0.00 37.91 2.15
2221 2452 6.186957 TCATTTTGCCCTGTATGTAGTTCAT 58.813 36.000 0.00 0.00 40.25 2.57
2222 2453 5.565509 TCATTTTGCCCTGTATGTAGTTCA 58.434 37.500 0.00 0.00 0.00 3.18
2223 2454 5.648092 ACTCATTTTGCCCTGTATGTAGTTC 59.352 40.000 0.00 0.00 0.00 3.01
2224 2455 5.415701 CACTCATTTTGCCCTGTATGTAGTT 59.584 40.000 0.00 0.00 0.00 2.24
2225 2456 4.943705 CACTCATTTTGCCCTGTATGTAGT 59.056 41.667 0.00 0.00 0.00 2.73
2226 2457 5.185454 TCACTCATTTTGCCCTGTATGTAG 58.815 41.667 0.00 0.00 0.00 2.74
2227 2458 5.172687 TCACTCATTTTGCCCTGTATGTA 57.827 39.130 0.00 0.00 0.00 2.29
2228 2459 4.032960 TCACTCATTTTGCCCTGTATGT 57.967 40.909 0.00 0.00 0.00 2.29
2229 2460 5.359009 AGATTCACTCATTTTGCCCTGTATG 59.641 40.000 0.00 0.00 0.00 2.39
2230 2461 5.513233 AGATTCACTCATTTTGCCCTGTAT 58.487 37.500 0.00 0.00 0.00 2.29
2231 2462 4.922206 AGATTCACTCATTTTGCCCTGTA 58.078 39.130 0.00 0.00 0.00 2.74
2232 2463 3.771216 AGATTCACTCATTTTGCCCTGT 58.229 40.909 0.00 0.00 0.00 4.00
2233 2464 4.701651 TGTAGATTCACTCATTTTGCCCTG 59.298 41.667 0.00 0.00 0.00 4.45
2234 2465 4.922206 TGTAGATTCACTCATTTTGCCCT 58.078 39.130 0.00 0.00 0.00 5.19
2235 2466 5.841957 ATGTAGATTCACTCATTTTGCCC 57.158 39.130 0.00 0.00 0.00 5.36
2236 2467 9.638239 TTTAAATGTAGATTCACTCATTTTGCC 57.362 29.630 14.16 0.00 37.44 4.52
2309 2540 9.780186 CTCCCTCCGTTTCTAAATATAAATCTT 57.220 33.333 0.00 0.00 0.00 2.40
2310 2541 8.935741 ACTCCCTCCGTTTCTAAATATAAATCT 58.064 33.333 0.00 0.00 0.00 2.40
2318 2549 8.711170 TGATTATTACTCCCTCCGTTTCTAAAT 58.289 33.333 0.00 0.00 0.00 1.40
2319 2550 8.081517 TGATTATTACTCCCTCCGTTTCTAAA 57.918 34.615 0.00 0.00 0.00 1.85
2320 2551 7.664552 TGATTATTACTCCCTCCGTTTCTAA 57.335 36.000 0.00 0.00 0.00 2.10
2321 2552 7.664552 TTGATTATTACTCCCTCCGTTTCTA 57.335 36.000 0.00 0.00 0.00 2.10
2322 2553 6.555463 TTGATTATTACTCCCTCCGTTTCT 57.445 37.500 0.00 0.00 0.00 2.52
2323 2554 6.427242 GGATTGATTATTACTCCCTCCGTTTC 59.573 42.308 0.00 0.00 0.00 2.78
2324 2555 6.126594 TGGATTGATTATTACTCCCTCCGTTT 60.127 38.462 0.00 0.00 0.00 3.60
2325 2556 5.368523 TGGATTGATTATTACTCCCTCCGTT 59.631 40.000 0.00 0.00 0.00 4.44
2326 2557 4.905456 TGGATTGATTATTACTCCCTCCGT 59.095 41.667 0.00 0.00 0.00 4.69
2327 2558 5.483685 TGGATTGATTATTACTCCCTCCG 57.516 43.478 0.00 0.00 0.00 4.63
2602 2936 2.572191 AACTCGATCGCACGGAATTA 57.428 45.000 11.09 0.00 0.00 1.40
2608 2942 1.266211 CGGTTTTAACTCGATCGCACG 60.266 52.381 11.09 3.76 0.00 5.34
2843 3276 4.372999 AAAGCAGAGGCAGGGGGC 62.373 66.667 0.00 0.00 44.61 5.80
2871 3321 4.795970 CAACTCACCACTTGTAGTTGTC 57.204 45.455 0.00 0.00 42.36 3.18
2982 3445 1.198759 TGTAGCCCACCTTCCTCACC 61.199 60.000 0.00 0.00 0.00 4.02
3174 3637 3.609853 TGGCTAGTGGTGACAATGAATC 58.390 45.455 0.00 0.00 46.06 2.52
3206 3763 3.259064 TCACTCGCAGCAGGTTAATTAC 58.741 45.455 0.00 0.00 0.00 1.89
3221 3778 2.061773 GCGTCCATCCATTATCACTCG 58.938 52.381 0.00 0.00 0.00 4.18
3229 3786 1.105167 CCTGCATGCGTCCATCCATT 61.105 55.000 14.09 0.00 0.00 3.16
3230 3787 1.527611 CCTGCATGCGTCCATCCAT 60.528 57.895 14.09 0.00 0.00 3.41
3231 3788 2.124612 CCTGCATGCGTCCATCCA 60.125 61.111 14.09 0.00 0.00 3.41
3232 3789 1.750399 AACCTGCATGCGTCCATCC 60.750 57.895 14.09 0.00 0.00 3.51
3254 3811 0.034059 ACGCCAAGTCTGAGGAGTTG 59.966 55.000 6.60 6.60 46.72 3.16
3256 3813 1.668294 CACGCCAAGTCTGAGGAGT 59.332 57.895 0.00 0.00 38.52 3.85
3262 3819 1.669115 CACCTCCACGCCAAGTCTG 60.669 63.158 0.00 0.00 0.00 3.51
3264 3821 1.668151 GTCACCTCCACGCCAAGTC 60.668 63.158 0.00 0.00 0.00 3.01
3358 3939 1.337167 GCTTGGGTCTTTGGATTGCAC 60.337 52.381 0.00 0.00 0.00 4.57
3401 3987 1.347320 GACAAGACCAATCGACGGAC 58.653 55.000 9.64 3.59 0.00 4.79
3402 3988 0.109458 CGACAAGACCAATCGACGGA 60.109 55.000 9.64 0.00 38.10 4.69
3403 3989 0.388134 ACGACAAGACCAATCGACGG 60.388 55.000 1.12 1.12 39.16 4.79
3405 3991 2.160013 CGAAACGACAAGACCAATCGAC 60.160 50.000 0.00 0.00 39.16 4.20
3406 3992 2.055838 CGAAACGACAAGACCAATCGA 58.944 47.619 0.00 0.00 39.16 3.59
3407 3993 1.790623 ACGAAACGACAAGACCAATCG 59.209 47.619 0.00 0.00 41.60 3.34
3408 3994 3.872560 AACGAAACGACAAGACCAATC 57.127 42.857 0.00 0.00 0.00 2.67
3425 4011 6.581370 CATACAACACTAGACAGTCAAAACG 58.419 40.000 2.66 0.00 30.46 3.60
3434 4020 3.325870 GTGCAGCATACAACACTAGACA 58.674 45.455 0.00 0.00 0.00 3.41
3458 4044 1.665448 CGATTTGGAAACATGCGTGCA 60.665 47.619 5.64 0.00 42.32 4.57
3468 4054 5.714333 TCAGGGATTTTGATCGATTTGGAAA 59.286 36.000 0.00 0.00 0.00 3.13
3610 4210 9.791820 TCAATCACAAAATGCAGTTTATCATAG 57.208 29.630 12.36 1.34 0.00 2.23
3620 4220 5.319140 TGGATCTCAATCACAAAATGCAG 57.681 39.130 0.00 0.00 33.21 4.41
3631 4231 3.246226 CGTCGATTGGTTGGATCTCAATC 59.754 47.826 15.11 15.11 41.73 2.67
3633 4233 2.028476 ACGTCGATTGGTTGGATCTCAA 60.028 45.455 0.00 0.00 0.00 3.02
3650 4250 0.723981 GAGCTGCAGGAATCAACGTC 59.276 55.000 17.12 0.00 0.00 4.34
3657 4258 1.117994 TGAGATCGAGCTGCAGGAAT 58.882 50.000 17.12 0.00 0.00 3.01
3661 4262 1.773410 CAGATGAGATCGAGCTGCAG 58.227 55.000 8.50 10.11 0.00 4.41
3807 4423 4.398988 TGCATCAACAGTTGAACTCACTTT 59.601 37.500 19.92 0.00 43.95 2.66
3814 4430 4.494350 ACAGATGCATCAACAGTTGAAC 57.506 40.909 27.81 14.93 43.95 3.18
3832 4448 2.705658 TCCCACCTGGAAGCATATACAG 59.294 50.000 0.00 0.00 41.40 2.74
3992 4611 1.109323 GGATTACCATGTGGCCAGCC 61.109 60.000 5.11 0.38 39.32 4.85
4096 4717 3.483196 CGGAATCATTGCATTAAGTTGCG 59.517 43.478 0.00 0.00 45.77 4.85
4112 4733 1.480954 TCAAGCCTGTAGGACGGAATC 59.519 52.381 1.17 0.00 37.39 2.52
4328 5024 2.978156 ACCATGGACATTCAACAGGT 57.022 45.000 21.47 0.00 0.00 4.00
4383 5083 1.328279 TGTCGATCGGTATCTGCCAT 58.672 50.000 16.41 0.00 0.00 4.40
4488 5208 8.612619 GTGAAAAGAAAAAGGAAAAAGGAATCC 58.387 33.333 0.00 0.00 35.88 3.01
4531 5252 4.955811 ATCTCATAAATGTCCGCCACTA 57.044 40.909 0.00 0.00 0.00 2.74
4587 5316 5.063204 TGTAAAGTCAAACAGATGTCCCTG 58.937 41.667 0.00 0.00 39.93 4.45
4590 5319 4.515191 TGCTGTAAAGTCAAACAGATGTCC 59.485 41.667 6.65 0.00 44.79 4.02
4625 5357 4.407818 CGAAAAGTAACAACACAGTTGCA 58.592 39.130 9.60 0.00 36.69 4.08
4637 5369 2.842457 ACCCTGTCACCGAAAAGTAAC 58.158 47.619 0.00 0.00 0.00 2.50
4638 5370 4.895668 ATACCCTGTCACCGAAAAGTAA 57.104 40.909 0.00 0.00 0.00 2.24
4639 5371 5.999205 TTATACCCTGTCACCGAAAAGTA 57.001 39.130 0.00 0.00 0.00 2.24
4693 5425 2.612285 AGATGTGGTGAGGAGACAGA 57.388 50.000 0.00 0.00 0.00 3.41
4726 5458 5.221541 CCAGGTTGTAAGGCCTCTAGAATAG 60.222 48.000 5.23 0.00 41.04 1.73
4727 5459 4.654262 CCAGGTTGTAAGGCCTCTAGAATA 59.346 45.833 5.23 0.00 31.73 1.75
4728 5460 3.456277 CCAGGTTGTAAGGCCTCTAGAAT 59.544 47.826 5.23 0.00 31.73 2.40
4729 5461 2.838202 CCAGGTTGTAAGGCCTCTAGAA 59.162 50.000 5.23 3.02 31.73 2.10
4730 5462 2.467880 CCAGGTTGTAAGGCCTCTAGA 58.532 52.381 5.23 0.00 31.73 2.43
4731 5463 1.486726 CCCAGGTTGTAAGGCCTCTAG 59.513 57.143 5.23 0.00 31.73 2.43
4732 5464 1.580059 CCCAGGTTGTAAGGCCTCTA 58.420 55.000 5.23 0.00 31.73 2.43
4733 5465 1.853250 GCCCAGGTTGTAAGGCCTCT 61.853 60.000 5.23 0.00 39.60 3.69
4734 5466 1.378646 GCCCAGGTTGTAAGGCCTC 60.379 63.158 5.23 0.00 39.60 4.70
4735 5467 2.763902 GCCCAGGTTGTAAGGCCT 59.236 61.111 0.00 0.00 39.60 5.19
4736 5468 2.750237 CGCCCAGGTTGTAAGGCC 60.750 66.667 0.00 0.00 42.66 5.19
4737 5469 2.530958 TAGCGCCCAGGTTGTAAGGC 62.531 60.000 2.29 0.00 42.18 4.35
4738 5470 0.743345 GTAGCGCCCAGGTTGTAAGG 60.743 60.000 2.29 0.00 0.00 2.69
4739 5471 0.249398 AGTAGCGCCCAGGTTGTAAG 59.751 55.000 2.29 0.00 0.00 2.34
4740 5472 0.248289 GAGTAGCGCCCAGGTTGTAA 59.752 55.000 2.29 0.00 0.00 2.41
4741 5473 0.613853 AGAGTAGCGCCCAGGTTGTA 60.614 55.000 2.29 0.00 0.00 2.41
4742 5474 1.913762 AGAGTAGCGCCCAGGTTGT 60.914 57.895 2.29 0.00 0.00 3.32
4743 5475 1.448540 CAGAGTAGCGCCCAGGTTG 60.449 63.158 2.29 0.00 0.00 3.77
4744 5476 2.982130 CAGAGTAGCGCCCAGGTT 59.018 61.111 2.29 0.00 0.00 3.50
4745 5477 3.775654 GCAGAGTAGCGCCCAGGT 61.776 66.667 2.29 0.00 0.00 4.00
4786 5518 2.520020 ATGGGATACGACCGGCGA 60.520 61.111 22.10 8.56 44.57 5.54
4789 5521 1.741327 AACGGATGGGATACGACCGG 61.741 60.000 0.00 0.00 46.15 5.28
4809 5541 2.353323 GGTTACAACTGGGACGAATCC 58.647 52.381 0.00 0.00 45.42 3.01
4840 5572 5.127031 GCATGCCCTAAGAACAAAAAGGATA 59.873 40.000 6.36 0.00 0.00 2.59
4841 5573 4.081476 GCATGCCCTAAGAACAAAAAGGAT 60.081 41.667 6.36 0.00 0.00 3.24
4850 5582 1.821136 AGCTTTGCATGCCCTAAGAAC 59.179 47.619 16.68 4.83 0.00 3.01
4856 5588 1.870055 CGTTCAGCTTTGCATGCCCT 61.870 55.000 16.68 3.26 0.00 5.19
4876 5608 5.616866 GCGTTCAGCTTTGATTGCTTTAGTA 60.617 40.000 0.00 0.00 44.04 1.82
4883 5615 1.668253 GCGCGTTCAGCTTTGATTGC 61.668 55.000 8.43 0.00 45.59 3.56
4887 5620 1.070175 GTTTAGCGCGTTCAGCTTTGA 60.070 47.619 8.43 0.00 43.24 2.69
4910 5643 2.109126 GCAGATGACGGGTTGCCTC 61.109 63.158 0.00 0.00 0.00 4.70
4912 5645 3.499737 CGCAGATGACGGGTTGCC 61.500 66.667 0.00 0.00 33.10 4.52
4937 5670 4.483683 CGCATGGCAACGACGACG 62.484 66.667 5.58 5.58 45.75 5.12
4938 5671 4.794241 GCGCATGGCAACGACGAC 62.794 66.667 16.24 0.00 42.87 4.34
4962 5695 0.708918 GTAGCGAGTCGACAAGCAAC 59.291 55.000 28.33 14.05 0.00 4.17
4981 5714 1.592669 CATTCACGGGAGCTAGGCG 60.593 63.158 0.00 0.00 0.00 5.52
4982 5715 0.530870 GACATTCACGGGAGCTAGGC 60.531 60.000 0.00 0.00 0.00 3.93
4987 5720 3.554692 CGCGACATTCACGGGAGC 61.555 66.667 0.00 0.00 44.21 4.70
5033 5766 2.835701 AAGGTGCGACGACGATGCAT 62.836 55.000 18.47 0.00 41.23 3.96
5107 5841 4.814294 ACTGGGGCGTCGCGAATC 62.814 66.667 12.06 5.17 0.00 2.52
5120 5854 1.026718 GGGGCATTCACGAGAACTGG 61.027 60.000 0.00 0.00 36.39 4.00
5121 5855 0.321564 TGGGGCATTCACGAGAACTG 60.322 55.000 0.00 0.00 36.39 3.16
5122 5856 0.620556 ATGGGGCATTCACGAGAACT 59.379 50.000 0.00 0.00 36.39 3.01
5129 5863 2.120909 CGGTGGATGGGGCATTCAC 61.121 63.158 0.00 0.00 46.46 3.18
5148 5882 4.389576 GACAACGGCAAGCTGCGG 62.390 66.667 12.02 12.02 46.21 5.69
5179 5913 2.596862 GGTGACGAAAACAAGTTGCAAC 59.403 45.455 22.17 22.17 0.00 4.17
5181 5915 2.088423 AGGTGACGAAAACAAGTTGCA 58.912 42.857 1.81 0.00 0.00 4.08
5191 5925 1.370609 TTTTGCGTGAGGTGACGAAA 58.629 45.000 0.00 0.00 42.10 3.46
5211 5945 0.178953 AGGCCATGTTCCAGCAAGTT 60.179 50.000 5.01 0.00 0.00 2.66
5212 5946 0.896940 CAGGCCATGTTCCAGCAAGT 60.897 55.000 5.01 0.00 0.00 3.16
5217 5951 2.401766 GCGACAGGCCATGTTCCAG 61.402 63.158 5.01 1.82 44.17 3.86
5229 5963 1.021202 TTTGTTGGAACCAGCGACAG 58.979 50.000 3.51 0.00 0.00 3.51
5230 5964 1.606668 GATTTGTTGGAACCAGCGACA 59.393 47.619 3.51 0.00 0.00 4.35
5231 5965 1.606668 TGATTTGTTGGAACCAGCGAC 59.393 47.619 3.51 0.00 0.00 5.19
5240 5974 1.818060 CCGGCAAGATGATTTGTTGGA 59.182 47.619 0.00 0.00 30.74 3.53
5244 5978 1.067635 GCAACCGGCAAGATGATTTGT 60.068 47.619 0.00 0.00 43.97 2.83
5264 5998 0.244994 ACTGAGTAGACGGCAAGCTG 59.755 55.000 0.00 0.00 0.00 4.24
5265 5999 0.528470 GACTGAGTAGACGGCAAGCT 59.472 55.000 0.00 0.00 0.00 3.74
5266 6000 0.458716 GGACTGAGTAGACGGCAAGC 60.459 60.000 0.00 0.00 0.00 4.01
5267 6001 0.173708 GGGACTGAGTAGACGGCAAG 59.826 60.000 0.00 0.00 0.00 4.01
5268 6002 0.541063 TGGGACTGAGTAGACGGCAA 60.541 55.000 0.00 0.00 0.00 4.52
5269 6003 0.965866 CTGGGACTGAGTAGACGGCA 60.966 60.000 0.00 0.00 0.00 5.69
5270 6004 1.810532 CTGGGACTGAGTAGACGGC 59.189 63.158 0.00 0.00 0.00 5.68
5271 6005 0.965866 TGCTGGGACTGAGTAGACGG 60.966 60.000 0.00 0.00 0.00 4.79
5272 6006 0.888619 TTGCTGGGACTGAGTAGACG 59.111 55.000 0.00 0.00 0.00 4.18
5273 6007 3.055819 TGATTTGCTGGGACTGAGTAGAC 60.056 47.826 0.00 0.00 0.00 2.59
5274 6008 3.173151 TGATTTGCTGGGACTGAGTAGA 58.827 45.455 0.00 0.00 0.00 2.59
5275 6009 3.616956 TGATTTGCTGGGACTGAGTAG 57.383 47.619 0.00 0.00 0.00 2.57
5276 6010 3.776969 AGATGATTTGCTGGGACTGAGTA 59.223 43.478 0.00 0.00 0.00 2.59
5277 6011 2.575279 AGATGATTTGCTGGGACTGAGT 59.425 45.455 0.00 0.00 0.00 3.41
5278 6012 3.204526 GAGATGATTTGCTGGGACTGAG 58.795 50.000 0.00 0.00 0.00 3.35
5279 6013 2.092753 GGAGATGATTTGCTGGGACTGA 60.093 50.000 0.00 0.00 0.00 3.41
5280 6014 2.295885 GGAGATGATTTGCTGGGACTG 58.704 52.381 0.00 0.00 0.00 3.51
5281 6015 1.213926 GGGAGATGATTTGCTGGGACT 59.786 52.381 0.00 0.00 0.00 3.85
5282 6016 1.064463 TGGGAGATGATTTGCTGGGAC 60.064 52.381 0.00 0.00 0.00 4.46
5283 6017 1.064463 GTGGGAGATGATTTGCTGGGA 60.064 52.381 0.00 0.00 0.00 4.37
5284 6018 1.396653 GTGGGAGATGATTTGCTGGG 58.603 55.000 0.00 0.00 0.00 4.45
5285 6019 1.019673 CGTGGGAGATGATTTGCTGG 58.980 55.000 0.00 0.00 0.00 4.85
5303 6037 6.493116 ACCGACTAGATGACAAAATACTACG 58.507 40.000 0.00 0.00 0.00 3.51
5304 6038 6.916932 GGACCGACTAGATGACAAAATACTAC 59.083 42.308 0.00 0.00 0.00 2.73
5321 6055 2.582052 TGATTTTTGCTTGGACCGACT 58.418 42.857 0.00 0.00 0.00 4.18
5323 6057 4.584874 TCTATGATTTTTGCTTGGACCGA 58.415 39.130 0.00 0.00 0.00 4.69
5342 6076 4.453751 ACCTAAGTTGCAACCGTTTTCTA 58.546 39.130 25.62 5.72 0.00 2.10
5344 6078 3.703286 ACCTAAGTTGCAACCGTTTTC 57.297 42.857 25.62 0.00 0.00 2.29
5349 6083 1.990563 CGACTACCTAAGTTGCAACCG 59.009 52.381 25.62 14.39 39.07 4.44
5357 6091 2.169352 TCCGACTAGCGACTACCTAAGT 59.831 50.000 7.94 0.00 44.57 2.24
5377 6111 1.902938 ACTGGCTGAAGGAAAAGCTC 58.097 50.000 0.00 0.00 39.46 4.09
5385 6119 1.896220 TTACTGCAACTGGCTGAAGG 58.104 50.000 0.00 0.00 43.53 3.46
5402 6136 4.760878 TGTCCGTGTTATAAGCTGCATTA 58.239 39.130 1.02 0.00 0.00 1.90
5403 6137 3.605634 TGTCCGTGTTATAAGCTGCATT 58.394 40.909 1.02 0.00 0.00 3.56
5404 6138 3.198068 CTGTCCGTGTTATAAGCTGCAT 58.802 45.455 1.02 0.00 0.00 3.96
5405 6139 2.028476 ACTGTCCGTGTTATAAGCTGCA 60.028 45.455 1.02 0.00 0.00 4.41
5406 6140 2.603560 GACTGTCCGTGTTATAAGCTGC 59.396 50.000 0.00 0.00 0.00 5.25
5407 6141 3.612860 GTGACTGTCCGTGTTATAAGCTG 59.387 47.826 5.17 0.00 0.00 4.24
5408 6142 3.257375 TGTGACTGTCCGTGTTATAAGCT 59.743 43.478 5.17 0.00 0.00 3.74
5409 6143 3.581755 TGTGACTGTCCGTGTTATAAGC 58.418 45.455 5.17 0.00 0.00 3.09
5414 6148 1.536496 CGGTTGTGACTGTCCGTGTTA 60.536 52.381 5.17 0.00 38.45 2.41
5424 6158 1.540363 GGTGATGTGACGGTTGTGACT 60.540 52.381 0.00 0.00 32.93 3.41
5431 6165 0.034896 GGTGAAGGTGATGTGACGGT 59.965 55.000 0.00 0.00 0.00 4.83
5433 6167 1.270305 ACTGGTGAAGGTGATGTGACG 60.270 52.381 0.00 0.00 0.00 4.35
5442 6176 0.106519 AAGCTGCAACTGGTGAAGGT 60.107 50.000 0.00 0.00 46.28 3.50
5450 6184 2.908634 CGTTTACAGAAGCTGCAACTG 58.091 47.619 19.08 19.08 34.37 3.16
5451 6185 1.264288 GCGTTTACAGAAGCTGCAACT 59.736 47.619 1.02 0.00 34.37 3.16
5470 6204 2.539346 TTGTAGAAGCTACGACGAGC 57.461 50.000 0.00 6.52 43.19 5.03
5473 6207 1.918609 GGCTTTGTAGAAGCTACGACG 59.081 52.381 10.21 0.00 42.62 5.12
5494 6228 2.084546 GGTAAGAAAAGCATCAGCCGT 58.915 47.619 0.00 0.00 43.56 5.68
5495 6229 2.083774 TGGTAAGAAAAGCATCAGCCG 58.916 47.619 0.00 0.00 43.56 5.52
5498 6232 4.019174 ACCCATGGTAAGAAAAGCATCAG 58.981 43.478 11.73 0.00 35.46 2.90
5502 6236 2.298729 GCAACCCATGGTAAGAAAAGCA 59.701 45.455 11.73 0.00 33.12 3.91
5508 6242 0.698238 AGCTGCAACCCATGGTAAGA 59.302 50.000 11.73 0.00 33.12 2.10
5548 6282 2.809174 CGACGGCGAATCACAGCA 60.809 61.111 16.62 0.00 40.82 4.41
5578 6312 2.047655 CGAGCCAGCCGGTACAAA 60.048 61.111 1.90 0.00 33.28 2.83
5579 6313 4.752879 GCGAGCCAGCCGGTACAA 62.753 66.667 1.90 0.00 33.28 2.41
5612 6346 2.325583 TTGTACATGGGAATCCGCTC 57.674 50.000 0.00 0.00 35.24 5.03
5620 6354 3.372566 GGTCATGGGATTTGTACATGGGA 60.373 47.826 0.00 0.00 41.64 4.37
5629 6363 2.449464 TCAAGCAGGTCATGGGATTTG 58.551 47.619 0.00 0.00 0.00 2.32
5644 6378 0.737715 AGTCGACGGATGCTTCAAGC 60.738 55.000 10.46 1.04 42.82 4.01
5649 6383 1.154016 CGACAGTCGACGGATGCTT 60.154 57.895 22.71 0.00 43.74 3.91
5662 6396 4.905269 TGTGTGAGATTATACGACGACAG 58.095 43.478 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.