Multiple sequence alignment - TraesCS7D01G279700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G279700 chr7D 100.000 7461 0 0 1 7461 271746969 271754429 0.000000e+00 13778.0
1 TraesCS7D01G279700 chr7D 87.791 688 47 18 1 659 37828465 37827786 0.000000e+00 771.0
2 TraesCS7D01G279700 chr7D 85.778 675 54 17 1 659 578799206 578798558 0.000000e+00 676.0
3 TraesCS7D01G279700 chr7D 88.571 105 10 1 5744 5846 504826667 504826563 7.860000e-25 126.0
4 TraesCS7D01G279700 chr7A 95.383 2599 78 18 3292 5874 303954047 303956619 0.000000e+00 4096.0
5 TraesCS7D01G279700 chr7A 95.040 2480 74 17 844 3289 303949736 303952200 0.000000e+00 3853.0
6 TraesCS7D01G279700 chr7A 90.220 1227 44 34 6278 7459 303957986 303959181 0.000000e+00 1531.0
7 TraesCS7D01G279700 chr7A 86.938 689 52 21 1 659 42016912 42017592 0.000000e+00 739.0
8 TraesCS7D01G279700 chr7A 85.061 656 52 18 43 659 645233607 645234255 1.770000e-175 627.0
9 TraesCS7D01G279700 chr7A 84.628 631 56 19 50 659 64465039 64464429 2.320000e-164 590.0
10 TraesCS7D01G279700 chr7A 83.121 705 62 30 28 721 563392435 563391777 2.320000e-164 590.0
11 TraesCS7D01G279700 chr7A 95.545 202 4 1 6083 6279 303956922 303956721 1.210000e-82 318.0
12 TraesCS7D01G279700 chr7A 98.077 104 2 0 5979 6082 303956618 303956721 1.650000e-41 182.0
13 TraesCS7D01G279700 chr7A 86.667 105 12 1 5744 5846 572489036 572488932 1.700000e-21 115.0
14 TraesCS7D01G279700 chr7A 93.750 48 3 0 824 871 303949691 303949738 1.040000e-08 73.1
15 TraesCS7D01G279700 chr7B 96.404 2141 69 5 3735 5875 267338302 267336170 0.000000e+00 3520.0
16 TraesCS7D01G279700 chr7B 91.213 1912 86 25 827 2692 267341702 267339827 0.000000e+00 2525.0
17 TraesCS7D01G279700 chr7B 94.279 1311 39 9 5979 7257 267336172 267334866 0.000000e+00 1973.0
18 TraesCS7D01G279700 chr7B 92.778 540 19 4 3020 3540 267338842 267338304 0.000000e+00 763.0
19 TraesCS7D01G279700 chr7B 86.996 669 49 14 43 682 559008551 559007892 0.000000e+00 719.0
20 TraesCS7D01G279700 chr7B 91.503 153 12 1 7309 7460 267334857 267334705 7.590000e-50 209.0
21 TraesCS7D01G279700 chr7B 93.137 102 7 0 2692 2793 267338958 267338857 4.660000e-32 150.0
22 TraesCS7D01G279700 chr7B 88.462 104 10 1 5744 5845 532662690 532662587 2.830000e-24 124.0
23 TraesCS7D01G279700 chr2B 90.075 665 39 11 1 646 295984142 295984798 0.000000e+00 837.0
24 TraesCS7D01G279700 chr2B 88.589 666 52 13 1 657 662515251 662514601 0.000000e+00 787.0
25 TraesCS7D01G279700 chr2B 83.096 633 55 25 20 644 246569054 246569642 5.130000e-146 529.0
26 TraesCS7D01G279700 chr2B 81.507 146 17 8 4711 4852 313484562 313484701 2.200000e-20 111.0
27 TraesCS7D01G279700 chr3B 89.185 675 47 10 1 658 568566018 568565353 0.000000e+00 819.0
28 TraesCS7D01G279700 chr3D 87.982 674 47 18 1 659 25368349 25369003 0.000000e+00 765.0
29 TraesCS7D01G279700 chr3D 88.318 642 34 16 43 659 484937314 484937939 0.000000e+00 732.0
30 TraesCS7D01G279700 chr3D 88.827 358 32 8 1 353 164544210 164543856 4.130000e-117 433.0
31 TraesCS7D01G279700 chr3D 100.000 32 0 0 628 659 484938210 484938241 8.080000e-05 60.2
32 TraesCS7D01G279700 chr5B 87.011 639 40 20 43 659 496271610 496270993 0.000000e+00 680.0
33 TraesCS7D01G279700 chr5B 84.554 628 64 12 1259 1858 51789813 51790435 6.450000e-165 592.0
34 TraesCS7D01G279700 chr5B 93.247 385 26 0 4333 4717 51790542 51790926 1.090000e-157 568.0
35 TraesCS7D01G279700 chr5B 83.282 646 67 16 5242 5850 51791218 51791859 2.350000e-154 556.0
36 TraesCS7D01G279700 chr5B 87.197 289 18 11 6196 6474 51791957 51792236 2.020000e-80 311.0
37 TraesCS7D01G279700 chr5B 81.132 318 32 20 350 659 32082187 32082484 5.820000e-56 230.0
38 TraesCS7D01G279700 chr5B 95.690 116 4 1 5869 5983 23682887 23683002 1.280000e-42 185.0
39 TraesCS7D01G279700 chr5D 96.104 385 15 0 4333 4717 49018407 49018791 4.910000e-176 628.0
40 TraesCS7D01G279700 chr5D 86.929 482 46 11 1259 1729 49017725 49018200 6.630000e-145 525.0
41 TraesCS7D01G279700 chr5D 83.168 606 69 18 5275 5851 49019131 49019732 2.390000e-144 523.0
42 TraesCS7D01G279700 chr5D 87.285 291 18 11 6195 6475 49019828 49020109 1.560000e-81 315.0
43 TraesCS7D01G279700 chr5A 95.325 385 18 0 4333 4717 38712294 38712678 4.950000e-171 612.0
44 TraesCS7D01G279700 chr5A 83.028 601 68 16 5279 5851 38713022 38713616 1.440000e-141 514.0
45 TraesCS7D01G279700 chr5A 81.555 656 81 18 1237 1858 38711541 38712190 8.640000e-139 505.0
46 TraesCS7D01G279700 chr5A 86.552 290 20 12 6196 6475 38713713 38713993 1.220000e-77 302.0
47 TraesCS7D01G279700 chr5A 90.698 129 10 2 5871 5998 622371724 622371597 3.580000e-38 171.0
48 TraesCS7D01G279700 chr3A 81.940 670 64 36 28 659 523379755 523379105 1.440000e-141 514.0
49 TraesCS7D01G279700 chr4A 81.886 668 65 33 28 659 4497048 4496401 5.160000e-141 512.0
50 TraesCS7D01G279700 chr4A 80.597 134 21 5 4728 4858 554837594 554837463 1.710000e-16 99.0
51 TraesCS7D01G279700 chr6A 81.764 669 59 37 1 659 74153167 74153782 1.120000e-137 501.0
52 TraesCS7D01G279700 chr6A 91.935 124 10 0 5871 5994 399221584 399221461 2.770000e-39 174.0
53 TraesCS7D01G279700 chrUn 81.132 318 32 20 350 659 368367411 368367708 5.820000e-56 230.0
54 TraesCS7D01G279700 chrUn 93.443 122 7 1 5873 5994 85401644 85401524 5.950000e-41 180.0
55 TraesCS7D01G279700 chrUn 94.118 119 6 1 5873 5991 242415481 242415598 5.950000e-41 180.0
56 TraesCS7D01G279700 chr1A 97.321 112 3 0 5873 5984 53034694 53034583 2.750000e-44 191.0
57 TraesCS7D01G279700 chr1A 89.655 58 4 2 2287 2343 24342104 24342160 1.040000e-08 73.1
58 TraesCS7D01G279700 chr2D 98.148 108 1 1 5874 5981 7649486 7649592 3.550000e-43 187.0
59 TraesCS7D01G279700 chr2D 80.822 146 17 9 4711 4852 278357004 278357142 3.680000e-18 104.0
60 TraesCS7D01G279700 chr6B 92.800 125 8 1 5871 5994 438619027 438619151 5.950000e-41 180.0
61 TraesCS7D01G279700 chr6D 92.000 125 9 1 5871 5994 276875587 276875711 2.770000e-39 174.0
62 TraesCS7D01G279700 chr6D 80.882 136 18 6 4762 4890 108801491 108801357 4.760000e-17 100.0
63 TraesCS7D01G279700 chr2A 80.822 146 17 9 4711 4852 320199628 320199490 3.680000e-18 104.0
64 TraesCS7D01G279700 chr4B 79.310 116 22 2 4747 4862 184303511 184303624 6.210000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G279700 chr7D 271746969 271754429 7460 False 13778.000000 13778 100.0000 1 7461 1 chr7D.!!$F1 7460
1 TraesCS7D01G279700 chr7D 37827786 37828465 679 True 771.000000 771 87.7910 1 659 1 chr7D.!!$R1 658
2 TraesCS7D01G279700 chr7D 578798558 578799206 648 True 676.000000 676 85.7780 1 659 1 chr7D.!!$R3 658
3 TraesCS7D01G279700 chr7A 303949691 303959181 9490 False 1947.020000 4096 94.4940 824 7459 5 chr7A.!!$F3 6635
4 TraesCS7D01G279700 chr7A 42016912 42017592 680 False 739.000000 739 86.9380 1 659 1 chr7A.!!$F1 658
5 TraesCS7D01G279700 chr7A 645233607 645234255 648 False 627.000000 627 85.0610 43 659 1 chr7A.!!$F2 616
6 TraesCS7D01G279700 chr7A 64464429 64465039 610 True 590.000000 590 84.6280 50 659 1 chr7A.!!$R1 609
7 TraesCS7D01G279700 chr7A 563391777 563392435 658 True 590.000000 590 83.1210 28 721 1 chr7A.!!$R3 693
8 TraesCS7D01G279700 chr7B 267334705 267341702 6997 True 1523.333333 3520 93.2190 827 7460 6 chr7B.!!$R3 6633
9 TraesCS7D01G279700 chr7B 559007892 559008551 659 True 719.000000 719 86.9960 43 682 1 chr7B.!!$R2 639
10 TraesCS7D01G279700 chr2B 295984142 295984798 656 False 837.000000 837 90.0750 1 646 1 chr2B.!!$F2 645
11 TraesCS7D01G279700 chr2B 662514601 662515251 650 True 787.000000 787 88.5890 1 657 1 chr2B.!!$R1 656
12 TraesCS7D01G279700 chr2B 246569054 246569642 588 False 529.000000 529 83.0960 20 644 1 chr2B.!!$F1 624
13 TraesCS7D01G279700 chr3B 568565353 568566018 665 True 819.000000 819 89.1850 1 658 1 chr3B.!!$R1 657
14 TraesCS7D01G279700 chr3D 25368349 25369003 654 False 765.000000 765 87.9820 1 659 1 chr3D.!!$F1 658
15 TraesCS7D01G279700 chr3D 484937314 484938241 927 False 396.100000 732 94.1590 43 659 2 chr3D.!!$F2 616
16 TraesCS7D01G279700 chr5B 496270993 496271610 617 True 680.000000 680 87.0110 43 659 1 chr5B.!!$R1 616
17 TraesCS7D01G279700 chr5B 51789813 51792236 2423 False 506.750000 592 87.0700 1259 6474 4 chr5B.!!$F3 5215
18 TraesCS7D01G279700 chr5D 49017725 49020109 2384 False 497.750000 628 88.3715 1259 6475 4 chr5D.!!$F1 5216
19 TraesCS7D01G279700 chr5A 38711541 38713993 2452 False 483.250000 612 86.6150 1237 6475 4 chr5A.!!$F1 5238
20 TraesCS7D01G279700 chr3A 523379105 523379755 650 True 514.000000 514 81.9400 28 659 1 chr3A.!!$R1 631
21 TraesCS7D01G279700 chr4A 4496401 4497048 647 True 512.000000 512 81.8860 28 659 1 chr4A.!!$R1 631
22 TraesCS7D01G279700 chr6A 74153167 74153782 615 False 501.000000 501 81.7640 1 659 1 chr6A.!!$F1 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
745 1276 0.108585 TGTGAGGTTTGACTCTGCCC 59.891 55.000 0.00 0.00 38.32 5.36 F
2069 2683 0.250727 GTACCTGGGTTTGCTGCTCA 60.251 55.000 0.00 0.00 0.00 4.26 F
3264 4785 1.672356 CACCACACAGCTGCTACCC 60.672 63.158 15.27 0.00 0.00 3.69 F
3644 7011 0.389948 CACGTGGAGACTTACCCTGC 60.390 60.000 7.95 0.00 0.00 4.85 F
3989 7356 1.006832 CGAAATCGAAATCAGCCGGT 58.993 50.000 1.90 0.00 43.02 5.28 F
5506 8984 0.393402 CACAGGCTAGCATGCTTGGA 60.393 55.000 28.11 7.05 43.11 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2165 2779 1.533338 GCGTCCACGGTACTATGACTG 60.533 57.143 0.55 0.00 40.23 3.51 R
3470 6836 0.253347 TGGGGAGCAGGGAGATTTCT 60.253 55.000 0.00 0.00 0.00 2.52 R
4507 7878 2.173569 AGCCTTCTTTGGAACAGTCTGT 59.826 45.455 0.00 0.00 42.39 3.41 R
5490 8968 0.107312 CTGTCCAAGCATGCTAGCCT 60.107 55.000 23.00 1.23 34.23 4.58 R
5910 9391 0.029300 GCTTTGCACGCTGTCTGAAA 59.971 50.000 0.00 0.00 0.00 2.69 R
6475 11050 0.248907 ACCGATATCCACGCTGTTCG 60.249 55.000 0.00 0.00 45.38 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 223 9.814899 TTCATGTATTCAAAAACAAGTTCACAT 57.185 25.926 0.00 0.00 0.00 3.21
199 264 7.780253 TCGATTTTCAAAAATGTTCATCGAG 57.220 32.000 5.48 0.00 38.64 4.04
207 272 6.583427 TCAAAAATGTTCATCGAGCAATGAAG 59.417 34.615 8.82 0.00 44.18 3.02
295 427 8.574196 AAGTTCATCGGATTTGTAAAAAGTTG 57.426 30.769 0.00 0.00 0.00 3.16
569 797 9.790389 TGAAAAACGTGTTTGTTATCATAGTTT 57.210 25.926 8.82 0.00 32.95 2.66
571 799 9.575783 AAAAACGTGTTTGTTATCATAGTTTGT 57.424 25.926 2.06 0.00 32.44 2.83
572 800 8.555166 AAACGTGTTTGTTATCATAGTTTGTG 57.445 30.769 0.00 0.00 31.64 3.33
573 801 7.485418 ACGTGTTTGTTATCATAGTTTGTGA 57.515 32.000 0.00 0.00 0.00 3.58
574 802 7.572759 ACGTGTTTGTTATCATAGTTTGTGAG 58.427 34.615 0.00 0.00 0.00 3.51
575 803 7.015289 CGTGTTTGTTATCATAGTTTGTGAGG 58.985 38.462 0.00 0.00 0.00 3.86
576 804 7.307751 CGTGTTTGTTATCATAGTTTGTGAGGT 60.308 37.037 0.00 0.00 0.00 3.85
600 828 1.074248 GGTTGGTCACCCCACGATT 59.926 57.895 0.00 0.00 45.19 3.34
604 832 2.234414 GTTGGTCACCCCACGATTACTA 59.766 50.000 0.00 0.00 45.19 1.82
618 846 3.119136 CGATTACTAATAACCAGCGACGC 59.881 47.826 13.03 13.03 0.00 5.19
619 847 3.788333 TTACTAATAACCAGCGACGCT 57.212 42.857 18.46 18.46 40.77 5.07
620 848 4.898829 TTACTAATAACCAGCGACGCTA 57.101 40.909 24.00 7.35 36.40 4.26
621 849 3.788333 ACTAATAACCAGCGACGCTAA 57.212 42.857 24.00 8.89 36.40 3.09
622 850 4.114058 ACTAATAACCAGCGACGCTAAA 57.886 40.909 24.00 8.51 36.40 1.85
625 1155 3.788333 ATAACCAGCGACGCTAAACTA 57.212 42.857 24.00 11.79 36.40 2.24
683 1214 5.678047 CGGTTAACAAAAACAGTAGAAACGG 59.322 40.000 8.10 0.00 0.00 4.44
686 1217 4.023739 ACAAAAACAGTAGAAACGGTGC 57.976 40.909 0.00 0.00 34.05 5.01
687 1218 3.692593 ACAAAAACAGTAGAAACGGTGCT 59.307 39.130 0.00 0.00 34.05 4.40
689 1220 5.354792 ACAAAAACAGTAGAAACGGTGCTAA 59.645 36.000 0.00 0.00 34.05 3.09
690 1221 5.413969 AAAACAGTAGAAACGGTGCTAAC 57.586 39.130 0.00 0.00 34.05 2.34
691 1222 3.036075 ACAGTAGAAACGGTGCTAACC 57.964 47.619 0.00 0.00 43.76 2.85
713 1244 2.992089 GCCTGCAGCGCTAAATAGA 58.008 52.632 10.99 0.00 0.00 1.98
721 1252 3.243201 GCAGCGCTAAATAGAAATTGCCT 60.243 43.478 10.99 0.00 0.00 4.75
722 1253 4.734695 GCAGCGCTAAATAGAAATTGCCTT 60.735 41.667 10.99 0.00 0.00 4.35
723 1254 4.736793 CAGCGCTAAATAGAAATTGCCTTG 59.263 41.667 10.99 0.00 0.00 3.61
724 1255 4.399303 AGCGCTAAATAGAAATTGCCTTGT 59.601 37.500 8.99 0.00 0.00 3.16
725 1256 5.102313 GCGCTAAATAGAAATTGCCTTGTT 58.898 37.500 0.00 0.00 0.00 2.83
726 1257 5.576774 GCGCTAAATAGAAATTGCCTTGTTT 59.423 36.000 0.00 0.00 0.00 2.83
727 1258 6.454186 GCGCTAAATAGAAATTGCCTTGTTTG 60.454 38.462 0.00 0.00 0.00 2.93
728 1259 6.586082 CGCTAAATAGAAATTGCCTTGTTTGT 59.414 34.615 0.00 0.00 0.00 2.83
729 1260 7.410728 CGCTAAATAGAAATTGCCTTGTTTGTG 60.411 37.037 0.00 0.00 0.00 3.33
730 1261 7.598493 GCTAAATAGAAATTGCCTTGTTTGTGA 59.402 33.333 0.00 0.00 0.00 3.58
731 1262 7.951530 AAATAGAAATTGCCTTGTTTGTGAG 57.048 32.000 0.00 0.00 0.00 3.51
732 1263 4.326504 AGAAATTGCCTTGTTTGTGAGG 57.673 40.909 0.00 0.00 36.09 3.86
733 1264 3.706086 AGAAATTGCCTTGTTTGTGAGGT 59.294 39.130 0.00 0.00 35.42 3.85
734 1265 4.162131 AGAAATTGCCTTGTTTGTGAGGTT 59.838 37.500 0.00 0.00 35.42 3.50
735 1266 4.486125 AATTGCCTTGTTTGTGAGGTTT 57.514 36.364 0.00 0.00 35.42 3.27
736 1267 2.957491 TGCCTTGTTTGTGAGGTTTG 57.043 45.000 0.00 0.00 35.42 2.93
737 1268 2.451490 TGCCTTGTTTGTGAGGTTTGA 58.549 42.857 0.00 0.00 35.42 2.69
738 1269 2.165437 TGCCTTGTTTGTGAGGTTTGAC 59.835 45.455 0.00 0.00 35.42 3.18
739 1270 2.427095 GCCTTGTTTGTGAGGTTTGACT 59.573 45.455 0.00 0.00 35.42 3.41
740 1271 3.489229 GCCTTGTTTGTGAGGTTTGACTC 60.489 47.826 0.00 0.00 37.99 3.36
741 1272 3.947834 CCTTGTTTGTGAGGTTTGACTCT 59.052 43.478 0.00 0.00 38.32 3.24
742 1273 4.201950 CCTTGTTTGTGAGGTTTGACTCTG 60.202 45.833 0.00 0.00 38.32 3.35
743 1274 2.682856 TGTTTGTGAGGTTTGACTCTGC 59.317 45.455 0.00 0.00 38.32 4.26
744 1275 1.967319 TTGTGAGGTTTGACTCTGCC 58.033 50.000 0.00 0.00 38.32 4.85
745 1276 0.108585 TGTGAGGTTTGACTCTGCCC 59.891 55.000 0.00 0.00 38.32 5.36
746 1277 0.398318 GTGAGGTTTGACTCTGCCCT 59.602 55.000 0.00 0.00 38.32 5.19
747 1278 0.687354 TGAGGTTTGACTCTGCCCTC 59.313 55.000 0.00 0.00 41.69 4.30
748 1279 0.390472 GAGGTTTGACTCTGCCCTCG 60.390 60.000 0.00 0.00 33.02 4.63
749 1280 2.035442 GGTTTGACTCTGCCCTCGC 61.035 63.158 0.00 0.00 0.00 5.03
750 1281 2.035442 GTTTGACTCTGCCCTCGCC 61.035 63.158 0.00 0.00 0.00 5.54
751 1282 3.254024 TTTGACTCTGCCCTCGCCC 62.254 63.158 0.00 0.00 0.00 6.13
753 1284 3.474570 GACTCTGCCCTCGCCCAT 61.475 66.667 0.00 0.00 0.00 4.00
754 1285 3.746949 GACTCTGCCCTCGCCCATG 62.747 68.421 0.00 0.00 0.00 3.66
767 1298 4.137872 CCATGCTGGCCCGCAAAG 62.138 66.667 26.35 19.91 44.06 2.77
768 1299 4.807039 CATGCTGGCCCGCAAAGC 62.807 66.667 26.35 15.56 44.06 3.51
772 1303 3.297620 CTGGCCCGCAAAGCAGTT 61.298 61.111 0.00 0.00 0.00 3.16
773 1304 2.837291 TGGCCCGCAAAGCAGTTT 60.837 55.556 0.00 0.00 0.00 2.66
774 1305 2.367868 CTGGCCCGCAAAGCAGTTTT 62.368 55.000 0.00 0.00 0.00 2.43
775 1306 1.227527 GGCCCGCAAAGCAGTTTTT 60.228 52.632 0.00 0.00 0.00 1.94
808 1339 6.425577 GTAAATGTATTTTACGGGTCAGCA 57.574 37.500 0.00 0.00 40.10 4.41
809 1340 7.023197 GTAAATGTATTTTACGGGTCAGCAT 57.977 36.000 0.00 0.00 40.10 3.79
810 1341 6.524101 AAATGTATTTTACGGGTCAGCATT 57.476 33.333 0.00 0.00 0.00 3.56
811 1342 7.633193 AAATGTATTTTACGGGTCAGCATTA 57.367 32.000 0.00 0.00 0.00 1.90
812 1343 7.817418 AATGTATTTTACGGGTCAGCATTAT 57.183 32.000 0.00 0.00 0.00 1.28
813 1344 8.911918 AATGTATTTTACGGGTCAGCATTATA 57.088 30.769 0.00 0.00 0.00 0.98
814 1345 7.718272 TGTATTTTACGGGTCAGCATTATAC 57.282 36.000 0.00 0.00 0.00 1.47
815 1346 5.917541 ATTTTACGGGTCAGCATTATACG 57.082 39.130 0.00 0.00 0.00 3.06
816 1347 3.374220 TTACGGGTCAGCATTATACGG 57.626 47.619 0.00 0.00 0.00 4.02
817 1348 0.391597 ACGGGTCAGCATTATACGGG 59.608 55.000 0.00 0.00 0.00 5.28
818 1349 0.391597 CGGGTCAGCATTATACGGGT 59.608 55.000 0.00 0.00 0.00 5.28
819 1350 1.604693 CGGGTCAGCATTATACGGGTC 60.605 57.143 0.00 0.00 0.00 4.46
820 1351 1.692519 GGGTCAGCATTATACGGGTCT 59.307 52.381 0.00 0.00 0.00 3.85
821 1352 2.548067 GGGTCAGCATTATACGGGTCTG 60.548 54.545 0.00 0.00 0.00 3.51
822 1353 2.135933 GTCAGCATTATACGGGTCTGC 58.864 52.381 0.00 0.00 0.00 4.26
823 1354 2.039418 TCAGCATTATACGGGTCTGCT 58.961 47.619 0.00 0.00 43.60 4.24
824 1355 3.005472 GTCAGCATTATACGGGTCTGCTA 59.995 47.826 0.00 0.00 41.01 3.49
825 1356 3.639561 TCAGCATTATACGGGTCTGCTAA 59.360 43.478 0.00 0.00 41.01 3.09
832 1363 6.543430 TTATACGGGTCTGCTAAACCTTAA 57.457 37.500 3.34 0.00 36.97 1.85
882 1436 2.275380 ATTCCCCGGCTGTTGCAAC 61.275 57.895 22.83 22.83 41.91 4.17
941 1498 3.156288 TCTCTCTTCTTCCTCCGTTCA 57.844 47.619 0.00 0.00 0.00 3.18
968 1525 4.079970 GTCGGAAAAGAGGGAGGAAAAAT 58.920 43.478 0.00 0.00 0.00 1.82
1044 1602 3.322466 CGCCCAGTTCTCCACCCT 61.322 66.667 0.00 0.00 0.00 4.34
1131 1689 3.752222 CCGTAGTATGCTACTCCTACCTG 59.248 52.174 17.42 1.29 44.02 4.00
1191 1749 2.879026 CGAACCTCTACGATCCAGATCA 59.121 50.000 8.31 0.00 37.69 2.92
1196 1754 1.954382 TCTACGATCCAGATCAACCGG 59.046 52.381 0.00 0.00 37.69 5.28
1371 1941 3.647771 GTCTGGGAAGGCGGGGTT 61.648 66.667 0.00 0.00 0.00 4.11
1670 2250 2.947652 CACTGCCATCCATCGATTTCTT 59.052 45.455 0.00 0.00 0.00 2.52
2003 2608 6.599244 CACCCTCTTTGCTAATTATCTGTCAA 59.401 38.462 0.00 0.00 0.00 3.18
2069 2683 0.250727 GTACCTGGGTTTGCTGCTCA 60.251 55.000 0.00 0.00 0.00 4.26
2102 2716 3.935203 AGAAATGCGTAGACCAGAACATG 59.065 43.478 0.00 0.00 0.00 3.21
2207 2821 4.757149 GCAGTTCACATTTACTCTTGGTCT 59.243 41.667 0.00 0.00 0.00 3.85
2235 2849 2.426738 CTCCCAGAAAAACTGCACAACA 59.573 45.455 0.00 0.00 44.52 3.33
2267 2892 2.739913 CAAAACCATCATGCAGGCAAAG 59.260 45.455 0.00 0.00 0.00 2.77
2396 3024 4.130118 CACTGAACTAAGGAAGCACACTT 58.870 43.478 0.00 0.00 39.43 3.16
2637 3271 6.072783 GGGAAACTGAGAGAATGAAAGAACAG 60.073 42.308 0.00 0.00 0.00 3.16
2988 4491 6.279513 TGGCCTATTACAAAATTGAACAGG 57.720 37.500 3.32 0.29 0.00 4.00
2994 4497 8.364142 CCTATTACAAAATTGAACAGGGTGAAA 58.636 33.333 0.00 0.00 0.00 2.69
3065 4568 7.117285 AGGATTATTCATTTTTGAAGAGGGC 57.883 36.000 0.00 0.00 0.00 5.19
3264 4785 1.672356 CACCACACAGCTGCTACCC 60.672 63.158 15.27 0.00 0.00 3.69
3290 6656 4.084910 CCACAAGGATAGCACTGCTTGC 62.085 54.545 9.30 2.99 45.38 4.01
3613 6980 3.846335 GCCGCTAGAAATGAAGAAAAACG 59.154 43.478 0.00 0.00 0.00 3.60
3618 6985 5.343325 GCTAGAAATGAAGAAAAACGCAAGG 59.657 40.000 0.00 0.00 46.39 3.61
3644 7011 0.389948 CACGTGGAGACTTACCCTGC 60.390 60.000 7.95 0.00 0.00 4.85
3674 7041 3.003763 ACCCCTCTGTTCGCCTCC 61.004 66.667 0.00 0.00 0.00 4.30
3677 7044 3.003173 CCTCTGTTCGCCTCCCCA 61.003 66.667 0.00 0.00 0.00 4.96
3693 7060 1.042559 CCCACTCTGGCTCTCTCCTC 61.043 65.000 0.00 0.00 35.79 3.71
3708 7075 4.899239 CTCGCCCCCATCTCGTGC 62.899 72.222 0.00 0.00 0.00 5.34
3760 7127 1.680314 CCTTGCTTTGCTCCCTCCC 60.680 63.158 0.00 0.00 0.00 4.30
3907 7274 2.401766 GCCAGCCTCATGAACCACG 61.402 63.158 0.00 0.00 0.00 4.94
3989 7356 1.006832 CGAAATCGAAATCAGCCGGT 58.993 50.000 1.90 0.00 43.02 5.28
3992 7359 1.094785 AATCGAAATCAGCCGGTTGG 58.905 50.000 18.99 1.60 38.77 3.77
4120 7487 5.426689 TGTATCATTGGCCCATCTCTATC 57.573 43.478 0.00 0.00 0.00 2.08
4147 7514 5.481200 AATCTCATTCTTCAATCTGTGCG 57.519 39.130 0.00 0.00 0.00 5.34
4247 7615 5.368989 AGTAAGCTGTTATCCATAGTTGCC 58.631 41.667 0.00 0.00 0.00 4.52
4252 7620 5.126061 AGCTGTTATCCATAGTTGCCTTTTG 59.874 40.000 0.00 0.00 0.00 2.44
4278 7646 3.756434 TCTTGTTGTTGCCTATGCTTACC 59.244 43.478 0.00 0.00 38.71 2.85
4281 7649 3.756434 TGTTGTTGCCTATGCTTACCTTC 59.244 43.478 0.00 0.00 38.71 3.46
4719 8090 5.935789 CCTTTCACGGGTACATTCTTCTTAA 59.064 40.000 0.00 0.00 0.00 1.85
4929 8315 2.233431 GTGTGCCTTTTCCCATGCATTA 59.767 45.455 0.00 0.00 35.96 1.90
5096 8486 6.703607 ACTCAATACTGCTGAATAGGATTTCG 59.296 38.462 0.00 0.00 0.00 3.46
5098 8488 6.701841 TCAATACTGCTGAATAGGATTTCGTC 59.298 38.462 0.00 0.00 0.00 4.20
5214 8619 1.202770 AGACTTGGTTGCCAGGTGTAC 60.203 52.381 7.66 0.00 43.91 2.90
5490 8968 0.912006 TGCATACCTACCCTGGCACA 60.912 55.000 0.00 0.00 0.00 4.57
5506 8984 0.393402 CACAGGCTAGCATGCTTGGA 60.393 55.000 28.11 7.05 43.11 3.53
5571 9049 3.360867 TCAGTTGGAATGTGGTGTTTGT 58.639 40.909 0.00 0.00 0.00 2.83
5596 9075 2.494059 TCTTCTCTGTTTGCGAAAGGG 58.506 47.619 0.00 0.00 0.00 3.95
5676 9157 9.347240 CAGAAAATAGAGAAATATGGTGGTCAT 57.653 33.333 0.00 0.00 39.78 3.06
5690 9171 3.244181 GGTGGTCATTTGTTCTGCCATTT 60.244 43.478 0.00 0.00 0.00 2.32
5695 9176 5.063817 GGTCATTTGTTCTGCCATTTAATGC 59.936 40.000 0.00 0.00 0.00 3.56
5765 9246 3.633986 AGCTGAAGAAGTTCAACCTTTGG 59.366 43.478 5.50 0.00 42.27 3.28
5833 9314 3.950794 TAAAGGCCTGGCTGACGCG 62.951 63.158 19.68 3.53 36.88 6.01
5874 9355 4.217550 GTGCTTTTAAGGGCATCACTTGTA 59.782 41.667 7.50 0.00 40.66 2.41
5875 9356 4.217550 TGCTTTTAAGGGCATCACTTGTAC 59.782 41.667 1.16 0.00 33.23 2.90
5876 9357 4.459337 GCTTTTAAGGGCATCACTTGTACT 59.541 41.667 0.00 0.00 0.00 2.73
5877 9358 5.392057 GCTTTTAAGGGCATCACTTGTACTC 60.392 44.000 0.00 0.00 0.00 2.59
5878 9359 2.789409 AAGGGCATCACTTGTACTCC 57.211 50.000 0.00 0.00 0.00 3.85
5879 9360 0.912486 AGGGCATCACTTGTACTCCC 59.088 55.000 0.00 0.00 0.00 4.30
5880 9361 0.912486 GGGCATCACTTGTACTCCCT 59.088 55.000 0.00 0.00 0.00 4.20
5881 9362 1.134371 GGGCATCACTTGTACTCCCTC 60.134 57.143 0.00 0.00 0.00 4.30
5882 9363 1.834263 GGCATCACTTGTACTCCCTCT 59.166 52.381 0.00 0.00 0.00 3.69
5883 9364 2.419297 GGCATCACTTGTACTCCCTCTG 60.419 54.545 0.00 0.00 0.00 3.35
5884 9365 2.234908 GCATCACTTGTACTCCCTCTGT 59.765 50.000 0.00 0.00 0.00 3.41
5885 9366 3.307059 GCATCACTTGTACTCCCTCTGTT 60.307 47.826 0.00 0.00 0.00 3.16
5886 9367 4.499183 CATCACTTGTACTCCCTCTGTTC 58.501 47.826 0.00 0.00 0.00 3.18
5887 9368 3.572642 TCACTTGTACTCCCTCTGTTCA 58.427 45.455 0.00 0.00 0.00 3.18
5888 9369 3.321111 TCACTTGTACTCCCTCTGTTCAC 59.679 47.826 0.00 0.00 0.00 3.18
5889 9370 3.322254 CACTTGTACTCCCTCTGTTCACT 59.678 47.826 0.00 0.00 0.00 3.41
5890 9371 3.967987 ACTTGTACTCCCTCTGTTCACTT 59.032 43.478 0.00 0.00 0.00 3.16
5891 9372 4.409247 ACTTGTACTCCCTCTGTTCACTTT 59.591 41.667 0.00 0.00 0.00 2.66
5892 9373 5.104485 ACTTGTACTCCCTCTGTTCACTTTT 60.104 40.000 0.00 0.00 0.00 2.27
5893 9374 6.099269 ACTTGTACTCCCTCTGTTCACTTTTA 59.901 38.462 0.00 0.00 0.00 1.52
5894 9375 6.681729 TGTACTCCCTCTGTTCACTTTTAT 57.318 37.500 0.00 0.00 0.00 1.40
5895 9376 7.786046 TGTACTCCCTCTGTTCACTTTTATA 57.214 36.000 0.00 0.00 0.00 0.98
5896 9377 8.197592 TGTACTCCCTCTGTTCACTTTTATAA 57.802 34.615 0.00 0.00 0.00 0.98
5897 9378 8.311836 TGTACTCCCTCTGTTCACTTTTATAAG 58.688 37.037 0.00 0.00 37.40 1.73
5898 9379 6.712276 ACTCCCTCTGTTCACTTTTATAAGG 58.288 40.000 0.00 0.00 35.61 2.69
5899 9380 5.497474 TCCCTCTGTTCACTTTTATAAGGC 58.503 41.667 0.00 0.00 35.61 4.35
5900 9381 4.332819 CCCTCTGTTCACTTTTATAAGGCG 59.667 45.833 0.00 0.00 35.61 5.52
5901 9382 4.935808 CCTCTGTTCACTTTTATAAGGCGT 59.064 41.667 0.00 0.00 35.61 5.68
5902 9383 5.411669 CCTCTGTTCACTTTTATAAGGCGTT 59.588 40.000 0.00 0.00 35.61 4.84
5903 9384 6.236017 TCTGTTCACTTTTATAAGGCGTTG 57.764 37.500 0.97 0.00 35.61 4.10
5904 9385 5.992829 TCTGTTCACTTTTATAAGGCGTTGA 59.007 36.000 0.97 0.00 35.61 3.18
5905 9386 6.483974 TCTGTTCACTTTTATAAGGCGTTGAA 59.516 34.615 0.97 0.00 35.61 2.69
5906 9387 6.664515 TGTTCACTTTTATAAGGCGTTGAAG 58.335 36.000 0.97 3.87 35.61 3.02
5907 9388 6.483974 TGTTCACTTTTATAAGGCGTTGAAGA 59.516 34.615 0.97 0.00 35.61 2.87
5908 9389 6.476243 TCACTTTTATAAGGCGTTGAAGAC 57.524 37.500 0.97 0.00 35.61 3.01
5909 9390 5.992829 TCACTTTTATAAGGCGTTGAAGACA 59.007 36.000 0.97 0.00 35.61 3.41
5910 9391 6.653320 TCACTTTTATAAGGCGTTGAAGACAT 59.347 34.615 0.97 0.00 35.61 3.06
5911 9392 7.174253 TCACTTTTATAAGGCGTTGAAGACATT 59.826 33.333 0.97 0.00 35.61 2.71
5912 9393 7.807907 CACTTTTATAAGGCGTTGAAGACATTT 59.192 33.333 0.97 0.00 35.61 2.32
5913 9394 8.021396 ACTTTTATAAGGCGTTGAAGACATTTC 58.979 33.333 0.97 0.00 35.61 2.17
5914 9395 7.441890 TTTATAAGGCGTTGAAGACATTTCA 57.558 32.000 0.97 0.00 0.00 2.69
5915 9396 3.904136 AAGGCGTTGAAGACATTTCAG 57.096 42.857 0.00 0.00 0.00 3.02
5916 9397 3.126001 AGGCGTTGAAGACATTTCAGA 57.874 42.857 0.00 0.00 0.00 3.27
5917 9398 2.808543 AGGCGTTGAAGACATTTCAGAC 59.191 45.455 0.00 0.00 0.00 3.51
5918 9399 2.548057 GGCGTTGAAGACATTTCAGACA 59.452 45.455 0.00 0.00 0.00 3.41
5919 9400 3.364366 GGCGTTGAAGACATTTCAGACAG 60.364 47.826 0.00 0.00 0.00 3.51
5920 9401 3.803555 CGTTGAAGACATTTCAGACAGC 58.196 45.455 0.00 0.00 0.00 4.40
5921 9402 3.662713 CGTTGAAGACATTTCAGACAGCG 60.663 47.826 0.00 0.00 0.00 5.18
5922 9403 3.111853 TGAAGACATTTCAGACAGCGT 57.888 42.857 0.00 0.00 0.00 5.07
5923 9404 2.802247 TGAAGACATTTCAGACAGCGTG 59.198 45.455 0.00 0.00 0.00 5.34
5924 9405 1.151668 AGACATTTCAGACAGCGTGC 58.848 50.000 0.00 0.00 0.00 5.34
5925 9406 0.867746 GACATTTCAGACAGCGTGCA 59.132 50.000 0.00 0.00 0.00 4.57
5926 9407 1.264020 GACATTTCAGACAGCGTGCAA 59.736 47.619 0.00 0.00 0.00 4.08
5927 9408 1.675483 ACATTTCAGACAGCGTGCAAA 59.325 42.857 0.00 0.00 0.00 3.68
5928 9409 2.287188 ACATTTCAGACAGCGTGCAAAG 60.287 45.455 0.00 0.00 0.00 2.77
5929 9410 0.029300 TTTCAGACAGCGTGCAAAGC 59.971 50.000 7.28 7.28 43.53 3.51
5930 9411 1.094650 TTCAGACAGCGTGCAAAGCA 61.095 50.000 16.36 0.00 46.50 3.91
5931 9412 1.082300 CAGACAGCGTGCAAAGCAG 60.082 57.895 16.36 11.35 46.50 4.24
5932 9413 2.428071 GACAGCGTGCAAAGCAGC 60.428 61.111 16.36 4.97 46.50 5.25
5933 9414 3.886329 GACAGCGTGCAAAGCAGCC 62.886 63.158 16.36 0.00 46.50 4.85
5934 9415 4.712425 CAGCGTGCAAAGCAGCCC 62.712 66.667 16.36 0.00 46.50 5.19
5936 9417 4.060038 GCGTGCAAAGCAGCCCAT 62.060 61.111 10.18 0.00 42.41 4.00
5937 9418 2.652530 CGTGCAAAGCAGCCCATT 59.347 55.556 0.00 0.00 40.08 3.16
5938 9419 1.005867 CGTGCAAAGCAGCCCATTT 60.006 52.632 0.00 0.00 40.08 2.32
5939 9420 0.600782 CGTGCAAAGCAGCCCATTTT 60.601 50.000 0.00 0.00 40.08 1.82
5940 9421 1.150827 GTGCAAAGCAGCCCATTTTC 58.849 50.000 0.00 0.00 40.08 2.29
5941 9422 0.757512 TGCAAAGCAGCCCATTTTCA 59.242 45.000 0.00 0.00 33.32 2.69
5942 9423 1.270412 TGCAAAGCAGCCCATTTTCAG 60.270 47.619 0.00 0.00 33.32 3.02
5943 9424 1.270465 GCAAAGCAGCCCATTTTCAGT 60.270 47.619 0.00 0.00 0.00 3.41
5944 9425 2.807837 GCAAAGCAGCCCATTTTCAGTT 60.808 45.455 0.00 0.00 0.00 3.16
5945 9426 2.803956 CAAAGCAGCCCATTTTCAGTTG 59.196 45.455 0.00 0.00 0.00 3.16
5946 9427 1.708341 AGCAGCCCATTTTCAGTTGT 58.292 45.000 0.00 0.00 0.00 3.32
5947 9428 1.615392 AGCAGCCCATTTTCAGTTGTC 59.385 47.619 0.00 0.00 0.00 3.18
5948 9429 1.615392 GCAGCCCATTTTCAGTTGTCT 59.385 47.619 0.00 0.00 0.00 3.41
5949 9430 2.608752 GCAGCCCATTTTCAGTTGTCTG 60.609 50.000 0.00 0.00 42.54 3.51
5967 9448 8.695355 GTTGTCTGAAACGACTTATAAAAGTG 57.305 34.615 0.00 0.00 46.09 3.16
5968 9449 8.545420 GTTGTCTGAAACGACTTATAAAAGTGA 58.455 33.333 0.00 0.00 46.09 3.41
5969 9450 8.651391 TGTCTGAAACGACTTATAAAAGTGAA 57.349 30.769 0.00 0.00 46.09 3.18
5970 9451 8.545420 TGTCTGAAACGACTTATAAAAGTGAAC 58.455 33.333 0.00 0.00 46.09 3.18
5971 9452 7.734726 GTCTGAAACGACTTATAAAAGTGAACG 59.265 37.037 0.00 0.00 46.09 3.95
5972 9453 6.879962 TGAAACGACTTATAAAAGTGAACGG 58.120 36.000 0.00 0.00 46.09 4.44
5973 9454 6.700960 TGAAACGACTTATAAAAGTGAACGGA 59.299 34.615 0.00 0.00 46.09 4.69
5974 9455 6.701432 AACGACTTATAAAAGTGAACGGAG 57.299 37.500 0.00 0.00 46.09 4.63
5975 9456 5.166398 ACGACTTATAAAAGTGAACGGAGG 58.834 41.667 0.00 0.00 46.09 4.30
5976 9457 4.565564 CGACTTATAAAAGTGAACGGAGGG 59.434 45.833 0.00 0.00 46.09 4.30
5977 9458 5.622914 CGACTTATAAAAGTGAACGGAGGGA 60.623 44.000 0.00 0.00 46.09 4.20
5978 9459 5.731591 ACTTATAAAAGTGAACGGAGGGAG 58.268 41.667 0.00 0.00 44.40 4.30
5979 9460 5.247792 ACTTATAAAAGTGAACGGAGGGAGT 59.752 40.000 0.00 0.00 44.40 3.85
6129 9615 5.560724 ACTGCTGTTTCTGCTTTCCTATAA 58.439 37.500 0.00 0.00 0.00 0.98
6475 11050 0.472471 TGTGACCCCTCAGTTGAACC 59.528 55.000 0.00 0.00 0.00 3.62
6697 11275 2.159382 CATTGTTTCTTACCGGTGGCT 58.841 47.619 19.93 0.00 0.00 4.75
6833 11418 3.181497 TGCTCTCTGCTTTTGTTTGTGTC 60.181 43.478 0.00 0.00 43.37 3.67
6840 11431 2.851824 GCTTTTGTTTGTGTCGTGGAAG 59.148 45.455 0.00 0.00 0.00 3.46
6841 11432 3.672241 GCTTTTGTTTGTGTCGTGGAAGT 60.672 43.478 0.00 0.00 0.00 3.01
6843 11434 1.374560 TGTTTGTGTCGTGGAAGTGG 58.625 50.000 0.00 0.00 0.00 4.00
6845 11436 2.011222 GTTTGTGTCGTGGAAGTGGAA 58.989 47.619 0.00 0.00 0.00 3.53
6846 11437 2.616842 GTTTGTGTCGTGGAAGTGGAAT 59.383 45.455 0.00 0.00 0.00 3.01
6847 11438 1.877637 TGTGTCGTGGAAGTGGAATG 58.122 50.000 0.00 0.00 0.00 2.67
6848 11439 1.156736 GTGTCGTGGAAGTGGAATGG 58.843 55.000 0.00 0.00 0.00 3.16
6850 11441 1.418264 TGTCGTGGAAGTGGAATGGAA 59.582 47.619 0.00 0.00 0.00 3.53
6851 11442 2.039746 TGTCGTGGAAGTGGAATGGAAT 59.960 45.455 0.00 0.00 0.00 3.01
6853 11444 2.304470 TCGTGGAAGTGGAATGGAATCA 59.696 45.455 0.00 0.00 0.00 2.57
7067 11682 5.352569 CCTTACATCTTGTCTTGTCCATGTC 59.647 44.000 0.00 0.00 0.00 3.06
7174 11792 1.941377 TGGCTCAAGCATTTCCCATT 58.059 45.000 4.13 0.00 44.36 3.16
7175 11793 2.259012 TGGCTCAAGCATTTCCCATTT 58.741 42.857 4.13 0.00 44.36 2.32
7176 11794 2.638855 TGGCTCAAGCATTTCCCATTTT 59.361 40.909 4.13 0.00 44.36 1.82
7177 11795 3.072768 TGGCTCAAGCATTTCCCATTTTT 59.927 39.130 4.13 0.00 44.36 1.94
7201 11819 0.313987 CCAAAGGCAGAAAACCGTCC 59.686 55.000 0.00 0.00 0.00 4.79
7225 11845 2.877168 GCGCCATCTCATCTCATCTTTT 59.123 45.455 0.00 0.00 0.00 2.27
7292 11912 6.233905 AGGTTTGTCAAAAGTAAAGGCATT 57.766 33.333 0.00 0.00 0.00 3.56
7295 11915 4.497473 TGTCAAAAGTAAAGGCATTCCG 57.503 40.909 0.00 0.00 37.47 4.30
7296 11916 4.138290 TGTCAAAAGTAAAGGCATTCCGA 58.862 39.130 0.00 0.00 37.47 4.55
7307 11927 8.621286 AGTAAAGGCATTCCGAACATAATAAAG 58.379 33.333 0.00 0.00 37.47 1.85
7337 11957 3.906660 GTCACTGGACCATCGAACA 57.093 52.632 0.00 0.00 38.12 3.18
7340 11960 1.691976 TCACTGGACCATCGAACAACT 59.308 47.619 0.00 0.00 0.00 3.16
7341 11961 1.800586 CACTGGACCATCGAACAACTG 59.199 52.381 0.00 0.00 0.00 3.16
7349 11969 0.604780 ATCGAACAACTGCTGCAGCT 60.605 50.000 36.61 17.94 42.66 4.24
7354 11974 2.486472 ACAACTGCTGCAGCTAGAAT 57.514 45.000 36.61 21.82 42.66 2.40
7381 12001 4.980805 ATGCGCCGTTGTCACCGT 62.981 61.111 4.18 0.00 0.00 4.83
7450 12070 0.683828 CATGCATGTGCCCCCTAACA 60.684 55.000 18.91 0.00 41.18 2.41
7460 12080 1.153229 CCCCTAACAACTAGCGCCC 60.153 63.158 2.29 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
481 677 9.025041 TCTCTGTTCTTTTCTTCTTTCCTTTTT 57.975 29.630 0.00 0.00 0.00 1.94
569 797 0.470456 ACCAACCCGACTACCTCACA 60.470 55.000 0.00 0.00 0.00 3.58
570 798 0.245813 GACCAACCCGACTACCTCAC 59.754 60.000 0.00 0.00 0.00 3.51
571 799 0.178955 TGACCAACCCGACTACCTCA 60.179 55.000 0.00 0.00 0.00 3.86
572 800 0.245813 GTGACCAACCCGACTACCTC 59.754 60.000 0.00 0.00 0.00 3.85
573 801 1.190178 GGTGACCAACCCGACTACCT 61.190 60.000 0.00 0.00 44.02 3.08
574 802 1.294459 GGTGACCAACCCGACTACC 59.706 63.158 0.00 0.00 44.02 3.18
600 828 4.898829 TTAGCGTCGCTGGTTATTAGTA 57.101 40.909 29.43 2.13 40.10 1.82
604 832 2.968675 AGTTTAGCGTCGCTGGTTATT 58.031 42.857 29.43 3.90 40.10 1.40
625 1155 0.386113 GCGAGCTAGGATTCGAACCT 59.614 55.000 18.91 18.91 39.06 3.50
683 1214 3.431725 GCAGGCACCGGTTAGCAC 61.432 66.667 17.73 7.98 0.00 4.40
686 1217 3.127533 GCTGCAGGCACCGGTTAG 61.128 66.667 17.12 0.00 41.35 2.34
694 1225 0.177836 TCTATTTAGCGCTGCAGGCA 59.822 50.000 22.90 0.00 41.91 4.75
704 1235 7.598493 TCACAAACAAGGCAATTTCTATTTAGC 59.402 33.333 0.00 0.00 0.00 3.09
713 1244 4.486125 AACCTCACAAACAAGGCAATTT 57.514 36.364 0.00 0.00 36.01 1.82
721 1252 3.128589 GCAGAGTCAAACCTCACAAACAA 59.871 43.478 0.00 0.00 33.75 2.83
722 1253 2.682856 GCAGAGTCAAACCTCACAAACA 59.317 45.455 0.00 0.00 33.75 2.83
723 1254 2.033424 GGCAGAGTCAAACCTCACAAAC 59.967 50.000 0.00 0.00 33.75 2.93
724 1255 2.297701 GGCAGAGTCAAACCTCACAAA 58.702 47.619 0.00 0.00 33.75 2.83
725 1256 1.476833 GGGCAGAGTCAAACCTCACAA 60.477 52.381 0.00 0.00 33.75 3.33
726 1257 0.108585 GGGCAGAGTCAAACCTCACA 59.891 55.000 0.00 0.00 33.75 3.58
727 1258 0.398318 AGGGCAGAGTCAAACCTCAC 59.602 55.000 0.00 0.00 33.75 3.51
728 1259 0.687354 GAGGGCAGAGTCAAACCTCA 59.313 55.000 17.26 0.00 45.45 3.86
729 1260 0.390472 CGAGGGCAGAGTCAAACCTC 60.390 60.000 13.89 13.89 43.29 3.85
730 1261 1.674057 CGAGGGCAGAGTCAAACCT 59.326 57.895 0.00 0.00 0.00 3.50
731 1262 2.035442 GCGAGGGCAGAGTCAAACC 61.035 63.158 0.00 0.00 39.62 3.27
732 1263 2.035442 GGCGAGGGCAGAGTCAAAC 61.035 63.158 0.00 0.00 42.47 2.93
733 1264 2.347490 GGCGAGGGCAGAGTCAAA 59.653 61.111 0.00 0.00 42.47 2.69
734 1265 3.706373 GGGCGAGGGCAGAGTCAA 61.706 66.667 0.00 0.00 42.47 3.18
736 1267 3.474570 ATGGGCGAGGGCAGAGTC 61.475 66.667 0.00 0.00 42.47 3.36
737 1268 3.790437 CATGGGCGAGGGCAGAGT 61.790 66.667 0.00 0.00 42.47 3.24
755 1286 2.367868 AAAACTGCTTTGCGGGCCAG 62.368 55.000 4.39 0.00 39.57 4.85
756 1287 1.965754 AAAAACTGCTTTGCGGGCCA 61.966 50.000 4.39 0.00 39.57 5.36
757 1288 1.227527 AAAAACTGCTTTGCGGGCC 60.228 52.632 0.00 0.00 39.57 5.80
758 1289 4.436515 AAAAACTGCTTTGCGGGC 57.563 50.000 3.35 0.00 39.57 6.13
785 1316 6.425577 TGCTGACCCGTAAAATACATTTAC 57.574 37.500 1.88 1.88 46.52 2.01
786 1317 7.633193 AATGCTGACCCGTAAAATACATTTA 57.367 32.000 0.00 0.00 32.27 1.40
787 1318 6.524101 AATGCTGACCCGTAAAATACATTT 57.476 33.333 0.00 0.00 34.92 2.32
788 1319 7.817418 ATAATGCTGACCCGTAAAATACATT 57.183 32.000 0.00 0.00 0.00 2.71
789 1320 7.117236 CGTATAATGCTGACCCGTAAAATACAT 59.883 37.037 0.00 0.00 0.00 2.29
790 1321 6.421501 CGTATAATGCTGACCCGTAAAATACA 59.578 38.462 0.00 0.00 0.00 2.29
791 1322 6.128742 CCGTATAATGCTGACCCGTAAAATAC 60.129 42.308 0.00 0.00 0.00 1.89
792 1323 5.927689 CCGTATAATGCTGACCCGTAAAATA 59.072 40.000 0.00 0.00 0.00 1.40
793 1324 4.753107 CCGTATAATGCTGACCCGTAAAAT 59.247 41.667 0.00 0.00 0.00 1.82
794 1325 4.121317 CCGTATAATGCTGACCCGTAAAA 58.879 43.478 0.00 0.00 0.00 1.52
795 1326 3.493002 CCCGTATAATGCTGACCCGTAAA 60.493 47.826 0.00 0.00 0.00 2.01
796 1327 2.036217 CCCGTATAATGCTGACCCGTAA 59.964 50.000 0.00 0.00 0.00 3.18
797 1328 1.614903 CCCGTATAATGCTGACCCGTA 59.385 52.381 0.00 0.00 0.00 4.02
798 1329 0.391597 CCCGTATAATGCTGACCCGT 59.608 55.000 0.00 0.00 0.00 5.28
799 1330 0.391597 ACCCGTATAATGCTGACCCG 59.608 55.000 0.00 0.00 0.00 5.28
800 1331 1.692519 AGACCCGTATAATGCTGACCC 59.307 52.381 0.00 0.00 0.00 4.46
801 1332 2.755650 CAGACCCGTATAATGCTGACC 58.244 52.381 0.00 0.00 0.00 4.02
802 1333 2.135933 GCAGACCCGTATAATGCTGAC 58.864 52.381 0.00 0.00 34.10 3.51
803 1334 2.039418 AGCAGACCCGTATAATGCTGA 58.961 47.619 0.00 0.00 45.08 4.26
804 1335 2.533266 AGCAGACCCGTATAATGCTG 57.467 50.000 0.00 0.00 45.08 4.41
806 1337 3.497262 GGTTTAGCAGACCCGTATAATGC 59.503 47.826 0.00 0.00 37.15 3.56
807 1338 4.957296 AGGTTTAGCAGACCCGTATAATG 58.043 43.478 0.17 0.00 37.93 1.90
808 1339 5.625568 AAGGTTTAGCAGACCCGTATAAT 57.374 39.130 0.17 0.00 37.93 1.28
809 1340 6.155049 AGTTAAGGTTTAGCAGACCCGTATAA 59.845 38.462 0.17 0.00 37.93 0.98
810 1341 5.658190 AGTTAAGGTTTAGCAGACCCGTATA 59.342 40.000 0.17 0.00 37.93 1.47
811 1342 4.468868 AGTTAAGGTTTAGCAGACCCGTAT 59.531 41.667 0.17 0.00 37.93 3.06
812 1343 3.834231 AGTTAAGGTTTAGCAGACCCGTA 59.166 43.478 0.17 0.00 37.93 4.02
813 1344 2.636403 AGTTAAGGTTTAGCAGACCCGT 59.364 45.455 0.17 0.00 37.93 5.28
814 1345 3.329929 AGTTAAGGTTTAGCAGACCCG 57.670 47.619 0.17 0.00 37.93 5.28
815 1346 5.769367 CAAAAGTTAAGGTTTAGCAGACCC 58.231 41.667 0.17 0.00 37.93 4.46
816 1347 5.220381 GCAAAAGTTAAGGTTTAGCAGACC 58.780 41.667 0.00 0.00 37.44 3.85
817 1348 5.827666 TGCAAAAGTTAAGGTTTAGCAGAC 58.172 37.500 0.00 0.00 0.00 3.51
819 1350 5.222631 CCTGCAAAAGTTAAGGTTTAGCAG 58.777 41.667 17.33 17.33 44.65 4.24
820 1351 4.500716 GCCTGCAAAAGTTAAGGTTTAGCA 60.501 41.667 0.00 0.00 32.06 3.49
821 1352 3.987868 GCCTGCAAAAGTTAAGGTTTAGC 59.012 43.478 0.00 0.00 32.06 3.09
822 1353 4.556233 GGCCTGCAAAAGTTAAGGTTTAG 58.444 43.478 0.00 0.00 32.06 1.85
823 1354 3.322541 GGGCCTGCAAAAGTTAAGGTTTA 59.677 43.478 0.84 0.00 32.06 2.01
824 1355 2.104111 GGGCCTGCAAAAGTTAAGGTTT 59.896 45.455 0.84 0.00 32.06 3.27
825 1356 1.691976 GGGCCTGCAAAAGTTAAGGTT 59.308 47.619 0.84 0.00 32.06 3.50
832 1363 0.396974 TTCAGTGGGCCTGCAAAAGT 60.397 50.000 4.53 0.00 41.25 2.66
882 1436 2.587574 GCATCGAGCGAGAAAGAGG 58.412 57.895 0.00 0.00 0.00 3.69
941 1498 0.541296 TCCCTCTTTTCCGACGAGGT 60.541 55.000 0.00 0.00 42.17 3.85
968 1525 1.543871 GCGGTTGTGGAAGGAGGTAAA 60.544 52.381 0.00 0.00 0.00 2.01
1033 1591 0.244178 GAGACGTGAGGGTGGAGAAC 59.756 60.000 0.00 0.00 0.00 3.01
1121 1679 2.431057 CGATTTGGTAGCAGGTAGGAGT 59.569 50.000 0.00 0.00 0.00 3.85
1131 1689 2.006772 CGTCCTGCGATTTGGTAGC 58.993 57.895 0.00 0.00 44.77 3.58
1165 1723 4.401519 TCTGGATCGTAGAGGTTCGAATTT 59.598 41.667 0.00 0.00 43.63 1.82
1368 1938 0.329596 AGACCATGAAGAGCCCAACC 59.670 55.000 0.00 0.00 0.00 3.77
1371 1941 1.617018 CGGAGACCATGAAGAGCCCA 61.617 60.000 0.00 0.00 0.00 5.36
1670 2250 9.021807 ACTACATTCTACTTACAAACTAGAGCA 57.978 33.333 0.00 0.00 0.00 4.26
1866 2471 4.163268 AGACCCTTATTCTTTGGAGAGCTC 59.837 45.833 5.27 5.27 32.44 4.09
2033 2647 1.987807 TACGAGGGTCGACTAGGGGG 61.988 65.000 16.46 3.15 43.74 5.40
2102 2716 5.938125 TGTTTCTTGTCTATTCCCTAACTGC 59.062 40.000 0.00 0.00 0.00 4.40
2165 2779 1.533338 GCGTCCACGGTACTATGACTG 60.533 57.143 0.55 0.00 40.23 3.51
2207 2821 2.426738 CAGTTTTTCTGGGAGCAACACA 59.573 45.455 0.00 0.00 40.23 3.72
2235 2849 5.393027 GCATGATGGTTTTGTTATCTCCGTT 60.393 40.000 0.00 0.00 0.00 4.44
2396 3024 4.350368 TGTGAGTCAAGTAATGGAAGCA 57.650 40.909 0.00 0.00 0.00 3.91
2637 3271 9.713713 ATCAGTTCCTTTCTTAGACTTTTAGTC 57.286 33.333 0.00 0.00 45.38 2.59
2689 3323 5.047660 GTCAAGTGATGAAGTAGTGAGGTCT 60.048 44.000 0.00 0.00 40.50 3.85
2849 4352 6.979418 TCCAGCTATATCTCCATCTGTATCT 58.021 40.000 0.00 0.00 0.00 1.98
2890 4393 8.931385 AAGTGCCATTTTTCATGTATGTAATC 57.069 30.769 0.00 0.00 0.00 1.75
2988 4491 3.747010 TGCACATTTTCATGCATTTCACC 59.253 39.130 0.00 0.00 46.63 4.02
3051 4554 2.286365 TCCACGCCCTCTTCAAAAAT 57.714 45.000 0.00 0.00 0.00 1.82
3052 4555 2.159382 GATCCACGCCCTCTTCAAAAA 58.841 47.619 0.00 0.00 0.00 1.94
3065 4568 3.436704 ACAGTGCTTTTATGTGATCCACG 59.563 43.478 0.00 0.00 37.14 4.94
3264 4785 1.078497 TGCTATCCTTGTGGTGGCG 60.078 57.895 0.00 0.00 34.23 5.69
3290 6656 4.057406 TCAAATCTGGGTGCTTGTTTTG 57.943 40.909 0.00 0.00 0.00 2.44
3296 6662 5.065235 CCAAAATTTCAAATCTGGGTGCTT 58.935 37.500 4.01 0.00 0.00 3.91
3470 6836 0.253347 TGGGGAGCAGGGAGATTTCT 60.253 55.000 0.00 0.00 0.00 2.52
3582 6949 3.768185 TTCTAGCGGCGCATCGGAC 62.768 63.158 35.02 1.84 0.00 4.79
3613 6980 2.094182 TCTCCACGTGATTCTACCTTGC 60.094 50.000 19.30 0.00 0.00 4.01
3618 6985 4.439837 GGGTAAGTCTCCACGTGATTCTAC 60.440 50.000 19.30 10.02 0.00 2.59
3674 7041 1.001503 AGGAGAGAGCCAGAGTGGG 59.998 63.158 0.00 0.00 38.19 4.61
3677 7044 1.752694 GCGAGGAGAGAGCCAGAGT 60.753 63.158 0.00 0.00 0.00 3.24
3760 7127 3.787001 GCCACGGGGGAAGAGAGG 61.787 72.222 5.47 0.00 40.01 3.69
3800 7167 2.077821 TTTTTCGTTTCCGGCCAGCC 62.078 55.000 2.24 0.00 33.95 4.85
3808 7175 5.217393 GTCAGTTACCCATTTTTCGTTTCC 58.783 41.667 0.00 0.00 0.00 3.13
3866 7233 2.031012 CTTCTGGCACGCTGTCCA 59.969 61.111 0.00 0.00 0.00 4.02
3907 7274 1.187271 CACATATTACGACGCTCACGC 59.813 52.381 0.00 0.00 45.53 5.34
4120 7487 7.041916 GCACAGATTGAAGAATGAGATTCCTAG 60.042 40.741 0.00 0.00 40.13 3.02
4147 7514 6.312180 CGAAATAGTAACACCCAACTACCTTC 59.688 42.308 0.00 0.00 31.30 3.46
4247 7615 5.861222 AGGCAACAACAAGAAAACAAAAG 57.139 34.783 0.00 0.00 41.41 2.27
4252 7620 4.620982 AGCATAGGCAACAACAAGAAAAC 58.379 39.130 0.67 0.00 44.61 2.43
4278 7646 7.661847 AGTCTTTACTCAATACACCAAAGGAAG 59.338 37.037 0.00 0.00 0.00 3.46
4281 7649 7.661847 AGAAGTCTTTACTCAATACACCAAAGG 59.338 37.037 0.00 0.00 33.75 3.11
4507 7878 2.173569 AGCCTTCTTTGGAACAGTCTGT 59.826 45.455 0.00 0.00 42.39 3.41
4719 8090 4.024670 GGCGGGGTATCATCTCTAGTTAT 58.975 47.826 0.00 0.00 0.00 1.89
4940 8326 9.396022 CCCACTTACTTATTTATCTCAACATGT 57.604 33.333 0.00 0.00 0.00 3.21
5096 8486 3.924073 GGGCCATTTGAATTTTGTACGAC 59.076 43.478 4.39 0.00 0.00 4.34
5098 8488 3.258228 GGGGCCATTTGAATTTTGTACG 58.742 45.455 4.39 0.00 0.00 3.67
5214 8619 7.682787 ATCAGGCCCCTATAATAGTATCAAG 57.317 40.000 0.00 0.00 0.00 3.02
5490 8968 0.107312 CTGTCCAAGCATGCTAGCCT 60.107 55.000 23.00 1.23 34.23 4.58
5596 9075 1.000396 AGAAAGCATCAGCCACCCC 60.000 57.895 0.00 0.00 43.56 4.95
5765 9246 0.029567 CTATCACGCACCTCCGAGAC 59.970 60.000 0.00 0.00 31.09 3.36
5833 9314 4.833390 AGCACTACCTTAAATCACCAGAC 58.167 43.478 0.00 0.00 0.00 3.51
5874 9355 6.712276 CCTTATAAAAGTGAACAGAGGGAGT 58.288 40.000 0.00 0.00 0.00 3.85
5875 9356 5.586643 GCCTTATAAAAGTGAACAGAGGGAG 59.413 44.000 0.00 0.00 0.00 4.30
5876 9357 5.497474 GCCTTATAAAAGTGAACAGAGGGA 58.503 41.667 0.00 0.00 0.00 4.20
5877 9358 4.332819 CGCCTTATAAAAGTGAACAGAGGG 59.667 45.833 0.00 0.00 0.00 4.30
5878 9359 4.935808 ACGCCTTATAAAAGTGAACAGAGG 59.064 41.667 3.42 0.00 0.00 3.69
5879 9360 6.147164 TCAACGCCTTATAAAAGTGAACAGAG 59.853 38.462 3.42 0.00 0.00 3.35
5880 9361 5.992829 TCAACGCCTTATAAAAGTGAACAGA 59.007 36.000 3.42 0.00 0.00 3.41
5881 9362 6.236017 TCAACGCCTTATAAAAGTGAACAG 57.764 37.500 3.42 0.00 0.00 3.16
5882 9363 6.483974 TCTTCAACGCCTTATAAAAGTGAACA 59.516 34.615 3.42 0.00 0.00 3.18
5883 9364 6.795593 GTCTTCAACGCCTTATAAAAGTGAAC 59.204 38.462 3.42 0.00 0.00 3.18
5884 9365 6.483974 TGTCTTCAACGCCTTATAAAAGTGAA 59.516 34.615 3.42 0.00 0.00 3.18
5885 9366 5.992829 TGTCTTCAACGCCTTATAAAAGTGA 59.007 36.000 3.42 0.00 0.00 3.41
5886 9367 6.236017 TGTCTTCAACGCCTTATAAAAGTG 57.764 37.500 0.00 0.00 0.00 3.16
5887 9368 7.448748 AATGTCTTCAACGCCTTATAAAAGT 57.551 32.000 0.00 0.00 0.00 2.66
5888 9369 8.020819 TGAAATGTCTTCAACGCCTTATAAAAG 58.979 33.333 0.00 0.00 0.00 2.27
5889 9370 7.877003 TGAAATGTCTTCAACGCCTTATAAAA 58.123 30.769 0.00 0.00 0.00 1.52
5890 9371 7.389330 TCTGAAATGTCTTCAACGCCTTATAAA 59.611 33.333 0.00 0.00 0.00 1.40
5891 9372 6.876789 TCTGAAATGTCTTCAACGCCTTATAA 59.123 34.615 0.00 0.00 0.00 0.98
5892 9373 6.312918 GTCTGAAATGTCTTCAACGCCTTATA 59.687 38.462 0.00 0.00 0.00 0.98
5893 9374 5.122396 GTCTGAAATGTCTTCAACGCCTTAT 59.878 40.000 0.00 0.00 0.00 1.73
5894 9375 4.451096 GTCTGAAATGTCTTCAACGCCTTA 59.549 41.667 0.00 0.00 0.00 2.69
5895 9376 3.251004 GTCTGAAATGTCTTCAACGCCTT 59.749 43.478 0.00 0.00 0.00 4.35
5896 9377 2.808543 GTCTGAAATGTCTTCAACGCCT 59.191 45.455 0.00 0.00 0.00 5.52
5897 9378 2.548057 TGTCTGAAATGTCTTCAACGCC 59.452 45.455 0.00 0.00 0.00 5.68
5898 9379 3.803555 CTGTCTGAAATGTCTTCAACGC 58.196 45.455 0.00 0.00 0.00 4.84
5899 9380 3.662713 CGCTGTCTGAAATGTCTTCAACG 60.663 47.826 0.00 0.00 0.00 4.10
5900 9381 3.248602 ACGCTGTCTGAAATGTCTTCAAC 59.751 43.478 0.00 0.00 0.00 3.18
5901 9382 3.248363 CACGCTGTCTGAAATGTCTTCAA 59.752 43.478 0.00 0.00 0.00 2.69
5902 9383 2.802247 CACGCTGTCTGAAATGTCTTCA 59.198 45.455 0.00 0.00 0.00 3.02
5903 9384 2.412065 GCACGCTGTCTGAAATGTCTTC 60.412 50.000 0.00 0.00 0.00 2.87
5904 9385 1.532868 GCACGCTGTCTGAAATGTCTT 59.467 47.619 0.00 0.00 0.00 3.01
5905 9386 1.151668 GCACGCTGTCTGAAATGTCT 58.848 50.000 0.00 0.00 0.00 3.41
5906 9387 0.867746 TGCACGCTGTCTGAAATGTC 59.132 50.000 0.00 0.00 0.00 3.06
5907 9388 1.308047 TTGCACGCTGTCTGAAATGT 58.692 45.000 0.00 0.00 0.00 2.71
5908 9389 2.313234 CTTTGCACGCTGTCTGAAATG 58.687 47.619 0.00 0.00 0.00 2.32
5909 9390 1.335324 GCTTTGCACGCTGTCTGAAAT 60.335 47.619 0.00 0.00 0.00 2.17
5910 9391 0.029300 GCTTTGCACGCTGTCTGAAA 59.971 50.000 0.00 0.00 0.00 2.69
5911 9392 1.094650 TGCTTTGCACGCTGTCTGAA 61.095 50.000 8.46 0.00 31.71 3.02
5912 9393 1.501337 CTGCTTTGCACGCTGTCTGA 61.501 55.000 8.46 0.00 33.79 3.27
5913 9394 1.082300 CTGCTTTGCACGCTGTCTG 60.082 57.895 8.46 0.00 33.79 3.51
5914 9395 2.901292 GCTGCTTTGCACGCTGTCT 61.901 57.895 13.25 0.00 33.79 3.41
5915 9396 2.428071 GCTGCTTTGCACGCTGTC 60.428 61.111 13.25 5.03 33.79 3.51
5916 9397 3.969802 GGCTGCTTTGCACGCTGT 61.970 61.111 13.25 0.00 34.75 4.40
5917 9398 4.712425 GGGCTGCTTTGCACGCTG 62.712 66.667 8.46 8.74 34.75 5.18
5919 9400 3.578515 AATGGGCTGCTTTGCACGC 62.579 57.895 0.00 0.32 39.64 5.34
5920 9401 0.600782 AAAATGGGCTGCTTTGCACG 60.601 50.000 0.00 0.00 39.64 5.34
5921 9402 1.150827 GAAAATGGGCTGCTTTGCAC 58.849 50.000 0.00 0.00 33.79 4.57
5922 9403 0.757512 TGAAAATGGGCTGCTTTGCA 59.242 45.000 0.00 0.00 36.92 4.08
5923 9404 1.270465 ACTGAAAATGGGCTGCTTTGC 60.270 47.619 0.00 0.00 0.00 3.68
5924 9405 2.803956 CAACTGAAAATGGGCTGCTTTG 59.196 45.455 0.00 0.00 0.00 2.77
5925 9406 2.435437 ACAACTGAAAATGGGCTGCTTT 59.565 40.909 0.00 0.00 0.00 3.51
5926 9407 2.036346 GACAACTGAAAATGGGCTGCTT 59.964 45.455 0.00 0.00 0.00 3.91
5927 9408 1.615392 GACAACTGAAAATGGGCTGCT 59.385 47.619 0.00 0.00 0.00 4.24
5928 9409 1.615392 AGACAACTGAAAATGGGCTGC 59.385 47.619 0.00 0.00 0.00 5.25
5929 9410 3.293311 CAGACAACTGAAAATGGGCTG 57.707 47.619 0.00 0.00 46.03 4.85
5940 9421 8.548721 ACTTTTATAAGTCGTTTCAGACAACTG 58.451 33.333 0.00 0.00 40.60 3.16
5941 9422 8.548721 CACTTTTATAAGTCGTTTCAGACAACT 58.451 33.333 0.00 0.00 42.67 3.16
5942 9423 8.545420 TCACTTTTATAAGTCGTTTCAGACAAC 58.455 33.333 0.00 0.00 42.67 3.32
5943 9424 8.651391 TCACTTTTATAAGTCGTTTCAGACAA 57.349 30.769 0.00 0.00 42.67 3.18
5944 9425 8.545420 GTTCACTTTTATAAGTCGTTTCAGACA 58.455 33.333 0.00 0.00 42.67 3.41
5945 9426 7.734726 CGTTCACTTTTATAAGTCGTTTCAGAC 59.265 37.037 0.00 0.00 42.67 3.51
5946 9427 7.095940 CCGTTCACTTTTATAAGTCGTTTCAGA 60.096 37.037 0.00 0.00 42.67 3.27
5947 9428 7.007697 CCGTTCACTTTTATAAGTCGTTTCAG 58.992 38.462 0.00 0.00 42.67 3.02
5948 9429 6.700960 TCCGTTCACTTTTATAAGTCGTTTCA 59.299 34.615 0.00 0.00 42.67 2.69
5949 9430 7.109006 TCCGTTCACTTTTATAAGTCGTTTC 57.891 36.000 0.00 0.00 42.67 2.78
5950 9431 6.146673 CCTCCGTTCACTTTTATAAGTCGTTT 59.853 38.462 0.00 0.00 42.67 3.60
5951 9432 5.636543 CCTCCGTTCACTTTTATAAGTCGTT 59.363 40.000 0.00 0.00 42.67 3.85
5952 9433 5.166398 CCTCCGTTCACTTTTATAAGTCGT 58.834 41.667 0.00 0.00 42.67 4.34
5953 9434 4.565564 CCCTCCGTTCACTTTTATAAGTCG 59.434 45.833 0.00 0.00 42.67 4.18
5954 9435 5.727434 TCCCTCCGTTCACTTTTATAAGTC 58.273 41.667 0.00 0.00 42.67 3.01
5955 9436 5.247792 ACTCCCTCCGTTCACTTTTATAAGT 59.752 40.000 0.00 0.00 45.40 2.24
5956 9437 5.731591 ACTCCCTCCGTTCACTTTTATAAG 58.268 41.667 0.00 0.00 37.40 1.73
5957 9438 5.750352 ACTCCCTCCGTTCACTTTTATAA 57.250 39.130 0.00 0.00 0.00 0.98
5958 9439 5.954150 ACTACTCCCTCCGTTCACTTTTATA 59.046 40.000 0.00 0.00 0.00 0.98
5959 9440 4.776308 ACTACTCCCTCCGTTCACTTTTAT 59.224 41.667 0.00 0.00 0.00 1.40
5960 9441 4.154942 ACTACTCCCTCCGTTCACTTTTA 58.845 43.478 0.00 0.00 0.00 1.52
5961 9442 2.970640 ACTACTCCCTCCGTTCACTTTT 59.029 45.455 0.00 0.00 0.00 2.27
5962 9443 2.606378 ACTACTCCCTCCGTTCACTTT 58.394 47.619 0.00 0.00 0.00 2.66
5963 9444 2.305858 ACTACTCCCTCCGTTCACTT 57.694 50.000 0.00 0.00 0.00 3.16
5964 9445 3.446442 TTACTACTCCCTCCGTTCACT 57.554 47.619 0.00 0.00 0.00 3.41
5965 9446 7.700022 ATATATTACTACTCCCTCCGTTCAC 57.300 40.000 0.00 0.00 0.00 3.18
5966 9447 7.395489 GGAATATATTACTACTCCCTCCGTTCA 59.605 40.741 0.00 0.00 0.00 3.18
5967 9448 7.614974 AGGAATATATTACTACTCCCTCCGTTC 59.385 40.741 8.55 0.00 0.00 3.95
5968 9449 7.477008 AGGAATATATTACTACTCCCTCCGTT 58.523 38.462 8.55 0.00 0.00 4.44
5969 9450 7.042106 AGGAATATATTACTACTCCCTCCGT 57.958 40.000 8.55 0.00 0.00 4.69
5970 9451 7.630944 GCAAGGAATATATTACTACTCCCTCCG 60.631 44.444 10.72 2.48 28.79 4.63
5971 9452 7.180408 TGCAAGGAATATATTACTACTCCCTCC 59.820 40.741 10.72 0.00 28.79 4.30
5972 9453 8.035984 GTGCAAGGAATATATTACTACTCCCTC 58.964 40.741 10.72 0.00 28.79 4.30
5973 9454 7.512746 TGTGCAAGGAATATATTACTACTCCCT 59.487 37.037 10.72 2.51 28.79 4.20
5974 9455 7.676947 TGTGCAAGGAATATATTACTACTCCC 58.323 38.462 10.72 0.16 28.79 4.30
5975 9456 9.555727 TTTGTGCAAGGAATATATTACTACTCC 57.444 33.333 10.72 0.82 28.79 3.85
6129 9615 5.815581 TCTTGCATACTACATTCCAAAGGT 58.184 37.500 0.00 0.00 0.00 3.50
6172 9658 5.643777 CACAAGGACAGGTAAAATACAGAGG 59.356 44.000 0.00 0.00 0.00 3.69
6475 11050 0.248907 ACCGATATCCACGCTGTTCG 60.249 55.000 0.00 0.00 45.38 3.95
6697 11275 1.001048 ACGACAGACCGATCAACGAAA 60.001 47.619 0.00 0.00 45.77 3.46
6833 11418 2.710377 TGATTCCATTCCACTTCCACG 58.290 47.619 0.00 0.00 0.00 4.94
6840 11431 3.119849 CCGTTGTCTTGATTCCATTCCAC 60.120 47.826 0.00 0.00 0.00 4.02
6841 11432 3.081061 CCGTTGTCTTGATTCCATTCCA 58.919 45.455 0.00 0.00 0.00 3.53
6843 11434 3.081804 ACCCGTTGTCTTGATTCCATTC 58.918 45.455 0.00 0.00 0.00 2.67
6845 11436 2.436417 CACCCGTTGTCTTGATTCCAT 58.564 47.619 0.00 0.00 0.00 3.41
6846 11437 1.890876 CACCCGTTGTCTTGATTCCA 58.109 50.000 0.00 0.00 0.00 3.53
6847 11438 0.521735 GCACCCGTTGTCTTGATTCC 59.478 55.000 0.00 0.00 0.00 3.01
6848 11439 1.234821 TGCACCCGTTGTCTTGATTC 58.765 50.000 0.00 0.00 0.00 2.52
6850 11441 1.453155 GATGCACCCGTTGTCTTGAT 58.547 50.000 0.00 0.00 0.00 2.57
6851 11442 0.948623 CGATGCACCCGTTGTCTTGA 60.949 55.000 0.00 0.00 0.00 3.02
6853 11444 1.671054 CCGATGCACCCGTTGTCTT 60.671 57.895 9.12 0.00 0.00 3.01
7067 11682 2.465860 TCCATCCAACAACGTACTGG 57.534 50.000 4.50 4.50 0.00 4.00
7201 11819 0.599466 ATGAGATGAGATGGCGCACG 60.599 55.000 10.83 0.00 0.00 5.34
7267 11887 6.043854 TGCCTTTACTTTTGACAAACCTTT 57.956 33.333 0.00 0.00 0.00 3.11
7268 11888 5.669164 TGCCTTTACTTTTGACAAACCTT 57.331 34.783 0.00 0.00 0.00 3.50
7282 11902 8.403236 ACTTTATTATGTTCGGAATGCCTTTAC 58.597 33.333 0.00 0.00 0.00 2.01
7337 11957 2.775911 TCATTCTAGCTGCAGCAGTT 57.224 45.000 38.24 21.89 45.16 3.16
7340 11960 1.306148 GCATCATTCTAGCTGCAGCA 58.694 50.000 38.24 23.25 45.16 4.41
7341 11961 1.306148 TGCATCATTCTAGCTGCAGC 58.694 50.000 31.53 31.53 39.54 5.25
7381 12001 0.472471 GGCCGGTTCTGATATGGGAA 59.528 55.000 1.90 0.00 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.