Multiple sequence alignment - TraesCS7D01G279400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G279400 chr7D 100.000 9257 0 0 1 9257 270772990 270782246 0.000000e+00 17095.0
1 TraesCS7D01G279400 chr7D 93.718 589 33 2 114 698 421832663 421832075 0.000000e+00 880.0
2 TraesCS7D01G279400 chr7D 93.277 595 30 6 114 698 92765347 92765941 0.000000e+00 869.0
3 TraesCS7D01G279400 chr7D 100.000 100 0 0 8636 8735 270781525 270781624 1.590000e-42 185.0
4 TraesCS7D01G279400 chr7D 100.000 100 0 0 8536 8635 270781625 270781724 1.590000e-42 185.0
5 TraesCS7D01G279400 chr7B 97.681 5046 69 16 3615 8635 270170355 270165333 0.000000e+00 8626.0
6 TraesCS7D01G279400 chr7B 97.805 2824 37 5 817 3622 270174877 270172061 0.000000e+00 4848.0
7 TraesCS7D01G279400 chr7B 89.851 404 37 4 8780 9182 270065615 270065215 4.960000e-142 516.0
8 TraesCS7D01G279400 chr7B 86.395 294 30 9 6232 6523 412608799 412609084 6.980000e-81 313.0
9 TraesCS7D01G279400 chr7B 86.254 291 30 9 6235 6523 13714012 13713730 3.250000e-79 307.0
10 TraesCS7D01G279400 chr7B 93.571 140 9 0 8636 8775 270165432 270165293 9.420000e-50 209.0
11 TraesCS7D01G279400 chr7B 90.789 76 5 2 9182 9257 270065174 270065101 5.910000e-17 100.0
12 TraesCS7D01G279400 chr7B 88.000 75 5 3 5102 5173 428837987 428837914 1.660000e-12 86.1
13 TraesCS7D01G279400 chr7A 95.626 2446 55 22 784 3205 301098010 301100427 0.000000e+00 3877.0
14 TraesCS7D01G279400 chr7A 96.688 1691 35 7 5441 7111 301102715 301104404 0.000000e+00 2793.0
15 TraesCS7D01G279400 chr7A 96.919 1558 34 5 7081 8635 301116607 301118153 0.000000e+00 2599.0
16 TraesCS7D01G279400 chr7A 96.472 1162 28 6 3202 4357 301100507 301101661 0.000000e+00 1906.0
17 TraesCS7D01G279400 chr7A 93.676 1091 37 10 4353 5438 301101684 301102747 0.000000e+00 1604.0
18 TraesCS7D01G279400 chr7A 94.268 471 22 4 8637 9107 301118055 301118520 0.000000e+00 715.0
19 TraesCS7D01G279400 chr7A 93.243 74 4 1 9182 9254 301118608 301118681 3.530000e-19 108.0
20 TraesCS7D01G279400 chr3B 92.767 636 31 10 114 736 747151536 747152169 0.000000e+00 905.0
21 TraesCS7D01G279400 chr3B 93.255 593 34 5 114 700 368957895 368958487 0.000000e+00 869.0
22 TraesCS7D01G279400 chr3B 96.703 91 3 0 1 91 731261544 731261634 1.610000e-32 152.0
23 TraesCS7D01G279400 chr3B 92.982 57 3 1 5100 5155 61525311 61525367 2.140000e-11 82.4
24 TraesCS7D01G279400 chr3B 88.333 60 4 2 5540 5598 286139594 286139651 1.670000e-07 69.4
25 TraesCS7D01G279400 chr5D 93.434 594 32 5 111 699 116197451 116198042 0.000000e+00 874.0
26 TraesCS7D01G279400 chr1A 91.905 630 42 7 114 737 371693500 371694126 0.000000e+00 872.0
27 TraesCS7D01G279400 chr1A 87.324 71 8 1 5081 5150 188149552 188149622 7.710000e-11 80.5
28 TraesCS7D01G279400 chr1A 94.286 35 1 1 2688 2722 37499681 37499648 1.700000e-02 52.8
29 TraesCS7D01G279400 chr3D 93.379 589 33 4 114 698 554795945 554795359 0.000000e+00 867.0
30 TraesCS7D01G279400 chr3D 87.311 528 51 10 1042 1565 9444487 9443972 2.880000e-164 590.0
31 TraesCS7D01G279400 chr3D 84.191 544 55 14 1362 1900 266651600 266652117 4.990000e-137 499.0
32 TraesCS7D01G279400 chr3D 89.634 164 15 1 1593 1754 9443805 9443642 3.390000e-49 207.0
33 TraesCS7D01G279400 chr3D 97.727 88 2 0 4 91 55109910 55109823 1.610000e-32 152.0
34 TraesCS7D01G279400 chr3D 96.703 91 3 0 1 91 554358367 554358457 1.610000e-32 152.0
35 TraesCS7D01G279400 chr6A 92.525 602 41 2 101 698 110031703 110031102 0.000000e+00 859.0
36 TraesCS7D01G279400 chr6A 91.388 627 48 4 114 736 29959100 29959724 0.000000e+00 854.0
37 TraesCS7D01G279400 chr2A 79.076 693 85 33 6585 7254 659627108 659626453 1.110000e-113 422.0
38 TraesCS7D01G279400 chr2A 89.655 319 27 4 6585 6901 735654043 735653729 1.450000e-107 401.0
39 TraesCS7D01G279400 chr2A 88.000 325 28 9 6201 6523 202787186 202786871 3.160000e-99 374.0
40 TraesCS7D01G279400 chr2A 86.462 325 29 13 6201 6523 202790307 202789996 8.900000e-90 342.0
41 TraesCS7D01G279400 chr2A 81.746 252 38 6 7008 7254 735653636 735653388 4.380000e-48 204.0
42 TraesCS7D01G279400 chr2A 78.704 108 21 2 5044 5149 598964963 598965070 4.640000e-08 71.3
43 TraesCS7D01G279400 chr2A 91.489 47 3 1 5548 5594 218121882 218121927 7.760000e-06 63.9
44 TraesCS7D01G279400 chr5A 85.476 420 36 11 6585 6985 155213645 155213232 1.860000e-111 414.0
45 TraesCS7D01G279400 chr5A 95.604 91 4 0 1 91 30496730 30496820 7.490000e-31 147.0
46 TraesCS7D01G279400 chr5A 95.238 42 1 1 5544 5584 360481017 360480976 2.160000e-06 65.8
47 TraesCS7D01G279400 chr2B 84.562 434 32 13 1470 1902 733163944 733164343 1.870000e-106 398.0
48 TraesCS7D01G279400 chr2B 87.013 77 8 2 5075 5149 683014755 683014679 1.660000e-12 86.1
49 TraesCS7D01G279400 chr2B 80.392 102 18 2 5051 5150 456029573 456029472 9.970000e-10 76.8
50 TraesCS7D01G279400 chr2B 92.857 42 1 2 5074 5114 720621052 720621012 1.000000e-04 60.2
51 TraesCS7D01G279400 chr2B 92.857 42 1 2 5074 5114 720638435 720638395 1.000000e-04 60.2
52 TraesCS7D01G279400 chr1B 88.308 325 30 7 6201 6523 193629848 193629530 5.240000e-102 383.0
53 TraesCS7D01G279400 chr1B 89.062 64 6 1 9020 9082 604329913 604329976 2.770000e-10 78.7
54 TraesCS7D01G279400 chr4A 86.562 320 34 8 6201 6517 371046843 371046530 2.470000e-90 344.0
55 TraesCS7D01G279400 chr4A 96.591 88 3 0 4 91 687021295 687021208 7.490000e-31 147.0
56 TraesCS7D01G279400 chr4A 90.741 54 5 0 4132 4185 716630272 716630219 1.290000e-08 73.1
57 TraesCS7D01G279400 chr5B 87.789 303 24 12 6585 6878 415275541 415275243 8.900000e-90 342.0
58 TraesCS7D01G279400 chr5B 81.992 261 36 10 7006 7262 415275171 415274918 2.620000e-50 211.0
59 TraesCS7D01G279400 chr4B 85.911 291 30 10 6235 6523 321640018 321639737 5.430000e-77 300.0
60 TraesCS7D01G279400 chr4B 88.060 67 5 3 5102 5167 346376880 346376816 9.970000e-10 76.8
61 TraesCS7D01G279400 chr4B 95.238 42 2 0 5546 5587 157287434 157287393 6.000000e-07 67.6
62 TraesCS7D01G279400 chr4B 91.489 47 3 1 5540 5586 434701471 434701426 7.760000e-06 63.9
63 TraesCS7D01G279400 chr2D 97.802 91 2 0 1 91 608448110 608448200 3.460000e-34 158.0
64 TraesCS7D01G279400 chr2D 83.544 79 11 2 9181 9257 80227794 80227716 1.290000e-08 73.1
65 TraesCS7D01G279400 chr6D 96.703 91 3 0 1 91 399416797 399416887 1.610000e-32 152.0
66 TraesCS7D01G279400 chr4D 96.703 91 3 0 1 91 290909081 290909171 1.610000e-32 152.0
67 TraesCS7D01G279400 chr4D 96.703 91 3 0 1 91 306299785 306299875 1.610000e-32 152.0
68 TraesCS7D01G279400 chr1D 92.157 51 3 1 4032 4082 423268425 423268376 4.640000e-08 71.3
69 TraesCS7D01G279400 chr1D 93.333 45 2 1 5544 5587 86064935 86064979 2.160000e-06 65.8
70 TraesCS7D01G279400 chr3A 85.484 62 7 2 5537 5596 472519450 472519511 7.760000e-06 63.9
71 TraesCS7D01G279400 chrUn 100.000 28 0 0 2688 2715 82558475 82558448 1.700000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G279400 chr7D 270772990 270782246 9256 False 5821.666667 17095 100.000000 1 9257 3 chr7D.!!$F2 9256
1 TraesCS7D01G279400 chr7D 421832075 421832663 588 True 880.000000 880 93.718000 114 698 1 chr7D.!!$R1 584
2 TraesCS7D01G279400 chr7D 92765347 92765941 594 False 869.000000 869 93.277000 114 698 1 chr7D.!!$F1 584
3 TraesCS7D01G279400 chr7B 270165293 270174877 9584 True 4561.000000 8626 96.352333 817 8775 3 chr7B.!!$R4 7958
4 TraesCS7D01G279400 chr7B 270065101 270065615 514 True 308.000000 516 90.320000 8780 9257 2 chr7B.!!$R3 477
5 TraesCS7D01G279400 chr7A 301098010 301104404 6394 False 2545.000000 3877 95.615500 784 7111 4 chr7A.!!$F1 6327
6 TraesCS7D01G279400 chr7A 301116607 301118681 2074 False 1140.666667 2599 94.810000 7081 9254 3 chr7A.!!$F2 2173
7 TraesCS7D01G279400 chr3B 747151536 747152169 633 False 905.000000 905 92.767000 114 736 1 chr3B.!!$F5 622
8 TraesCS7D01G279400 chr3B 368957895 368958487 592 False 869.000000 869 93.255000 114 700 1 chr3B.!!$F3 586
9 TraesCS7D01G279400 chr5D 116197451 116198042 591 False 874.000000 874 93.434000 111 699 1 chr5D.!!$F1 588
10 TraesCS7D01G279400 chr1A 371693500 371694126 626 False 872.000000 872 91.905000 114 737 1 chr1A.!!$F2 623
11 TraesCS7D01G279400 chr3D 554795359 554795945 586 True 867.000000 867 93.379000 114 698 1 chr3D.!!$R2 584
12 TraesCS7D01G279400 chr3D 266651600 266652117 517 False 499.000000 499 84.191000 1362 1900 1 chr3D.!!$F1 538
13 TraesCS7D01G279400 chr3D 9443642 9444487 845 True 398.500000 590 88.472500 1042 1754 2 chr3D.!!$R3 712
14 TraesCS7D01G279400 chr6A 110031102 110031703 601 True 859.000000 859 92.525000 101 698 1 chr6A.!!$R1 597
15 TraesCS7D01G279400 chr6A 29959100 29959724 624 False 854.000000 854 91.388000 114 736 1 chr6A.!!$F1 622
16 TraesCS7D01G279400 chr2A 659626453 659627108 655 True 422.000000 422 79.076000 6585 7254 1 chr2A.!!$R1 669
17 TraesCS7D01G279400 chr2A 202786871 202790307 3436 True 358.000000 374 87.231000 6201 6523 2 chr2A.!!$R2 322
18 TraesCS7D01G279400 chr2A 735653388 735654043 655 True 302.500000 401 85.700500 6585 7254 2 chr2A.!!$R3 669
19 TraesCS7D01G279400 chr5B 415274918 415275541 623 True 276.500000 342 84.890500 6585 7262 2 chr5B.!!$R1 677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.036671 GAGAACACCTGTAACGGGGG 60.037 60.000 0.00 0.0 39.66 5.40 F
95 96 0.109153 AACACCTGTAACGGGGGAAC 59.891 55.000 1.37 0.0 34.67 3.62 F
1757 1947 0.034059 GGGCTGACGTATGCTATGCT 59.966 55.000 11.24 0.0 0.00 3.79 F
1758 1948 1.272490 GGGCTGACGTATGCTATGCTA 59.728 52.381 11.24 0.0 0.00 3.49 F
2168 2366 1.612463 GCATTCCTGATTGATCCTGCC 59.388 52.381 0.00 0.0 0.00 4.85 F
4614 6667 0.179094 ACCGTGAACGAGCACAAGAA 60.179 50.000 4.03 0.0 43.02 2.52 F
5283 7340 0.179100 CACCGAGTGGCACCATCTAG 60.179 60.000 15.27 3.4 39.70 2.43 F
5285 7342 0.537188 CCGAGTGGCACCATCTAGTT 59.463 55.000 15.27 0.0 0.00 2.24 F
5504 7565 0.596082 GTGTGGCATAAGGCGTTGTT 59.404 50.000 0.97 0.0 46.16 2.83 F
6990 12199 2.662866 CTGCTGGAATGGGATGACATT 58.337 47.619 0.00 0.0 43.36 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1494 1534 1.065564 GCTTCAGAGAGCCACCAGAAT 60.066 52.381 0.00 0.00 36.66 2.40 R
1886 2079 5.613358 ACAGAAGCGACAAGGAAAATAAG 57.387 39.130 0.00 0.00 0.00 1.73 R
3666 5663 4.854173 TGCAGGGCTAAATATGAAACTCA 58.146 39.130 0.00 0.00 0.00 3.41 R
4273 6285 1.729470 CTCACGTGAGAGGATCGGGG 61.729 65.000 36.73 9.65 44.74 5.73 R
4618 6671 3.865745 CCATCGTGACAAGGTTATGACTC 59.134 47.826 0.00 0.00 0.00 3.36 R
5904 7965 0.322322 ACGACCACGGCCTGAAATTA 59.678 50.000 0.00 0.00 44.46 1.40 R
7111 12326 1.140852 CTCTGTGGAAACAGGGTCACA 59.859 52.381 6.06 0.00 44.46 3.58 R
7706 12926 5.474532 CCAAAAATGAGGATCTTCAGTGTCA 59.525 40.000 13.44 0.00 34.92 3.58 R
8079 13299 1.918262 TGCAGTTGAATCCCAGGATCT 59.082 47.619 0.00 0.00 33.08 2.75 R
8541 13764 0.036577 AGTTGGCAGCAGCTACTCTG 60.037 55.000 3.63 5.68 45.62 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.489393 GCCTTTTGAAAACAAAGAAACAAATAG 57.511 29.630 0.00 0.00 33.69 1.73
27 28 9.986833 CCTTTTGAAAACAAAGAAACAAATAGG 57.013 29.630 0.00 0.00 33.69 2.57
28 29 9.489393 CTTTTGAAAACAAAGAAACAAATAGGC 57.511 29.630 0.00 0.00 33.69 3.93
29 30 8.553459 TTTGAAAACAAAGAAACAAATAGGCA 57.447 26.923 0.00 0.00 0.00 4.75
30 31 7.769272 TGAAAACAAAGAAACAAATAGGCAG 57.231 32.000 0.00 0.00 0.00 4.85
31 32 7.551585 TGAAAACAAAGAAACAAATAGGCAGA 58.448 30.769 0.00 0.00 0.00 4.26
32 33 8.203485 TGAAAACAAAGAAACAAATAGGCAGAT 58.797 29.630 0.00 0.00 0.00 2.90
33 34 7.951530 AAACAAAGAAACAAATAGGCAGATG 57.048 32.000 0.00 0.00 0.00 2.90
34 35 6.029346 ACAAAGAAACAAATAGGCAGATGG 57.971 37.500 0.00 0.00 0.00 3.51
35 36 5.047092 ACAAAGAAACAAATAGGCAGATGGG 60.047 40.000 0.00 0.00 0.00 4.00
36 37 3.026694 AGAAACAAATAGGCAGATGGGC 58.973 45.455 0.00 0.00 43.80 5.36
80 81 2.251371 GCCCGTTTGCGAGAACAC 59.749 61.111 0.00 0.00 41.33 3.32
81 82 2.943653 CCCGTTTGCGAGAACACC 59.056 61.111 0.00 0.00 41.33 4.16
82 83 1.597027 CCCGTTTGCGAGAACACCT 60.597 57.895 0.00 0.00 41.33 4.00
83 84 1.569493 CCGTTTGCGAGAACACCTG 59.431 57.895 0.00 0.00 41.33 4.00
84 85 1.157870 CCGTTTGCGAGAACACCTGT 61.158 55.000 0.00 0.00 41.33 4.00
85 86 1.493772 CGTTTGCGAGAACACCTGTA 58.506 50.000 0.00 0.00 41.33 2.74
86 87 1.862201 CGTTTGCGAGAACACCTGTAA 59.138 47.619 0.00 0.00 41.33 2.41
87 88 2.348218 CGTTTGCGAGAACACCTGTAAC 60.348 50.000 0.00 0.00 41.33 2.50
88 89 1.493772 TTGCGAGAACACCTGTAACG 58.506 50.000 0.00 0.00 0.00 3.18
89 90 0.319211 TGCGAGAACACCTGTAACGG 60.319 55.000 0.00 0.00 0.00 4.44
90 91 1.012486 GCGAGAACACCTGTAACGGG 61.012 60.000 0.00 0.00 35.68 5.28
91 92 0.389426 CGAGAACACCTGTAACGGGG 60.389 60.000 0.00 0.00 33.40 5.73
92 93 0.036671 GAGAACACCTGTAACGGGGG 60.037 60.000 0.00 0.00 39.66 5.40
93 94 0.472352 AGAACACCTGTAACGGGGGA 60.472 55.000 1.37 0.00 34.67 4.81
94 95 0.397564 GAACACCTGTAACGGGGGAA 59.602 55.000 1.37 0.00 34.67 3.97
95 96 0.109153 AACACCTGTAACGGGGGAAC 59.891 55.000 1.37 0.00 34.67 3.62
112 113 0.890996 AACCAGCCGCCTTTTCTCTG 60.891 55.000 0.00 0.00 0.00 3.35
125 126 3.780804 TTTCTCTGGGGATGAAAACGA 57.219 42.857 0.00 0.00 0.00 3.85
150 151 0.462789 AAACGGACGGAACTGAGTGT 59.537 50.000 0.00 0.00 0.00 3.55
204 207 3.682696 GGAAACGAATACAGAAACCCCT 58.317 45.455 0.00 0.00 0.00 4.79
434 439 3.707611 ACTGGACAATTGCGTATAGGGTA 59.292 43.478 5.05 0.00 0.00 3.69
503 508 9.897744 CATTCTACTAATTGTGTCATTGTGTTT 57.102 29.630 0.00 0.00 0.00 2.83
518 523 3.165875 TGTGTTTTCTTTGGTGGTTGGA 58.834 40.909 0.00 0.00 0.00 3.53
599 609 4.895668 AGTTCCATTTCCATGCATGTTT 57.104 36.364 24.58 4.19 0.00 2.83
605 615 1.902938 TTCCATGCATGTTTCACCGA 58.097 45.000 24.58 10.37 0.00 4.69
686 699 4.763594 TGCAAATTTTCGTTTCCGTTTC 57.236 36.364 0.00 0.00 35.01 2.78
687 700 4.425520 TGCAAATTTTCGTTTCCGTTTCT 58.574 34.783 0.00 0.00 35.01 2.52
700 720 4.540359 TCCGTTTCTATTTTTCCTCCGA 57.460 40.909 0.00 0.00 0.00 4.55
737 757 2.244769 CCACCCCATTTTCATCCCTACT 59.755 50.000 0.00 0.00 0.00 2.57
738 758 3.309848 CCACCCCATTTTCATCCCTACTT 60.310 47.826 0.00 0.00 0.00 2.24
739 759 3.954258 CACCCCATTTTCATCCCTACTTC 59.046 47.826 0.00 0.00 0.00 3.01
740 760 3.858638 ACCCCATTTTCATCCCTACTTCT 59.141 43.478 0.00 0.00 0.00 2.85
741 761 4.079730 ACCCCATTTTCATCCCTACTTCTC 60.080 45.833 0.00 0.00 0.00 2.87
742 762 4.464947 CCCATTTTCATCCCTACTTCTCC 58.535 47.826 0.00 0.00 0.00 3.71
743 763 4.464947 CCATTTTCATCCCTACTTCTCCC 58.535 47.826 0.00 0.00 0.00 4.30
744 764 3.906720 TTTTCATCCCTACTTCTCCCG 57.093 47.619 0.00 0.00 0.00 5.14
745 765 2.544844 TTCATCCCTACTTCTCCCGT 57.455 50.000 0.00 0.00 0.00 5.28
746 766 1.776662 TCATCCCTACTTCTCCCGTG 58.223 55.000 0.00 0.00 0.00 4.94
747 767 1.006758 TCATCCCTACTTCTCCCGTGT 59.993 52.381 0.00 0.00 0.00 4.49
748 768 1.831736 CATCCCTACTTCTCCCGTGTT 59.168 52.381 0.00 0.00 0.00 3.32
749 769 1.263356 TCCCTACTTCTCCCGTGTTG 58.737 55.000 0.00 0.00 0.00 3.33
750 770 0.249398 CCCTACTTCTCCCGTGTTGG 59.751 60.000 0.00 0.00 37.55 3.77
760 780 2.261671 CGTGTTGGGACTCGGGAG 59.738 66.667 0.00 0.00 38.66 4.30
761 781 2.571216 CGTGTTGGGACTCGGGAGT 61.571 63.158 0.00 0.00 45.84 3.85
762 782 1.246056 CGTGTTGGGACTCGGGAGTA 61.246 60.000 0.48 0.00 42.66 2.59
763 783 0.531200 GTGTTGGGACTCGGGAGTAG 59.469 60.000 0.48 0.00 42.66 2.57
764 784 0.406750 TGTTGGGACTCGGGAGTAGA 59.593 55.000 0.48 0.00 42.66 2.59
765 785 1.104630 GTTGGGACTCGGGAGTAGAG 58.895 60.000 0.48 0.00 42.66 2.43
771 791 2.830651 ACTCGGGAGTAGAGTTGGAT 57.169 50.000 0.00 0.00 45.74 3.41
772 792 3.103080 ACTCGGGAGTAGAGTTGGATT 57.897 47.619 0.00 0.00 45.74 3.01
773 793 2.761208 ACTCGGGAGTAGAGTTGGATTG 59.239 50.000 0.00 0.00 45.74 2.67
774 794 2.101582 CTCGGGAGTAGAGTTGGATTGG 59.898 54.545 0.00 0.00 0.00 3.16
775 795 1.139058 CGGGAGTAGAGTTGGATTGGG 59.861 57.143 0.00 0.00 0.00 4.12
776 796 1.134068 GGGAGTAGAGTTGGATTGGGC 60.134 57.143 0.00 0.00 0.00 5.36
777 797 1.840635 GGAGTAGAGTTGGATTGGGCT 59.159 52.381 0.00 0.00 0.00 5.19
778 798 2.420687 GGAGTAGAGTTGGATTGGGCTG 60.421 54.545 0.00 0.00 0.00 4.85
779 799 2.237392 GAGTAGAGTTGGATTGGGCTGT 59.763 50.000 0.00 0.00 0.00 4.40
780 800 2.026822 AGTAGAGTTGGATTGGGCTGTG 60.027 50.000 0.00 0.00 0.00 3.66
781 801 0.610232 AGAGTTGGATTGGGCTGTGC 60.610 55.000 0.00 0.00 0.00 4.57
782 802 0.895100 GAGTTGGATTGGGCTGTGCA 60.895 55.000 0.00 0.00 0.00 4.57
793 813 0.940126 GGCTGTGCACCTATGAATCG 59.060 55.000 15.69 0.00 0.00 3.34
839 859 6.605471 AAACCCTATGAATCCTCAAAAACC 57.395 37.500 0.00 0.00 34.49 3.27
840 860 4.270008 ACCCTATGAATCCTCAAAAACCG 58.730 43.478 0.00 0.00 34.49 4.44
903 923 1.638467 CGACTTGCTGGCTATTCGC 59.362 57.895 4.38 0.00 38.13 4.70
1288 1326 5.892348 AGTCAGATTTTGGGTGGACTTTAT 58.108 37.500 0.00 0.00 32.04 1.40
1371 1409 8.912658 CCACGTGTTACTGTATCATATATGAAC 58.087 37.037 19.03 16.84 40.69 3.18
1494 1534 0.113776 ACCCAAGGTACCGTCTCTCA 59.886 55.000 6.18 0.00 32.11 3.27
1755 1945 1.284982 GCGGGCTGACGTATGCTATG 61.285 60.000 11.24 4.20 35.98 2.23
1756 1946 1.284982 CGGGCTGACGTATGCTATGC 61.285 60.000 11.24 0.00 0.00 3.14
1757 1947 0.034059 GGGCTGACGTATGCTATGCT 59.966 55.000 11.24 0.00 0.00 3.79
1758 1948 1.272490 GGGCTGACGTATGCTATGCTA 59.728 52.381 11.24 0.00 0.00 3.49
1759 1949 2.093973 GGGCTGACGTATGCTATGCTAT 60.094 50.000 11.24 0.00 0.00 2.97
1886 2079 5.622770 TTCTCTATTTTCCTTTGGCGAAC 57.377 39.130 0.00 0.00 0.00 3.95
2168 2366 1.612463 GCATTCCTGATTGATCCTGCC 59.388 52.381 0.00 0.00 0.00 4.85
2285 2483 5.276348 CGTCTTCAACAAAATTGCCAAAGAC 60.276 40.000 16.86 16.86 38.39 3.01
2693 2892 6.867662 AGAGTCCTTTTGTTGTATTCTGTG 57.132 37.500 0.00 0.00 0.00 3.66
2846 3045 1.766496 TCCAACGGAGTCAACCTCTTT 59.234 47.619 0.00 0.00 45.00 2.52
3241 3525 6.992664 ATCTCTCCTAGCATTTGTATGTCT 57.007 37.500 0.00 0.00 34.12 3.41
3409 3693 9.177608 TGAAGATCTTGAGGTTACCATAATTTG 57.822 33.333 14.00 0.00 0.00 2.32
3666 5663 4.141869 ACAACCTTAGTTTGGTGTCTACGT 60.142 41.667 0.00 0.00 37.93 3.57
4273 6285 0.734309 AACGTTTCGTGGGTTGTTCC 59.266 50.000 0.00 0.00 39.99 3.62
4608 6661 4.980805 GGCCACCGTGAACGAGCA 62.981 66.667 4.03 0.00 43.02 4.26
4609 6662 3.712881 GCCACCGTGAACGAGCAC 61.713 66.667 4.03 0.00 43.02 4.40
4610 6663 2.279851 CCACCGTGAACGAGCACA 60.280 61.111 4.03 0.00 43.02 4.57
4611 6664 1.885388 CCACCGTGAACGAGCACAA 60.885 57.895 4.03 0.00 43.02 3.33
4612 6665 1.564622 CACCGTGAACGAGCACAAG 59.435 57.895 4.03 5.84 43.02 3.16
4613 6666 0.874175 CACCGTGAACGAGCACAAGA 60.874 55.000 4.03 0.00 43.02 3.02
4614 6667 0.179094 ACCGTGAACGAGCACAAGAA 60.179 50.000 4.03 0.00 43.02 2.52
4615 6668 0.934496 CCGTGAACGAGCACAAGAAA 59.066 50.000 4.03 0.00 43.02 2.52
4616 6669 1.329292 CCGTGAACGAGCACAAGAAAA 59.671 47.619 4.03 0.00 43.02 2.29
4617 6670 2.223157 CCGTGAACGAGCACAAGAAAAA 60.223 45.455 4.03 0.00 43.02 1.94
4618 6671 3.029074 CGTGAACGAGCACAAGAAAAAG 58.971 45.455 11.63 0.00 43.02 2.27
4624 6677 4.130118 ACGAGCACAAGAAAAAGAGTCAT 58.870 39.130 0.00 0.00 0.00 3.06
4633 6686 7.857885 CACAAGAAAAAGAGTCATAACCTTGTC 59.142 37.037 13.60 0.00 39.43 3.18
4647 6700 2.431057 ACCTTGTCACGATGGATAGGAC 59.569 50.000 0.00 0.00 0.00 3.85
4849 6902 3.717707 AGGATCACATTGGTTCGTATCG 58.282 45.455 0.00 0.00 0.00 2.92
4959 7014 2.369394 CTTGAGGGTTGTATTGAGGGC 58.631 52.381 0.00 0.00 0.00 5.19
5073 7128 1.694150 CTCCCTCTGTCTGGAAACACA 59.306 52.381 0.00 0.00 35.60 3.72
5115 7170 4.969484 TCTAGCACGTCTAGATACATCCA 58.031 43.478 16.08 0.00 46.58 3.41
5144 7199 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
5220 7277 1.358725 GCTGTCGGCGCTATTTCACA 61.359 55.000 7.64 0.00 0.00 3.58
5282 7339 1.897423 CACCGAGTGGCACCATCTA 59.103 57.895 15.27 0.00 39.70 1.98
5283 7340 0.179100 CACCGAGTGGCACCATCTAG 60.179 60.000 15.27 3.40 39.70 2.43
5284 7341 0.614979 ACCGAGTGGCACCATCTAGT 60.615 55.000 15.27 4.02 39.70 2.57
5285 7342 0.537188 CCGAGTGGCACCATCTAGTT 59.463 55.000 15.27 0.00 0.00 2.24
5504 7565 0.596082 GTGTGGCATAAGGCGTTGTT 59.404 50.000 0.97 0.00 46.16 2.83
5664 7725 8.149973 TCTTGTGTTGTCTCTTTGTATAAACC 57.850 34.615 0.00 0.00 0.00 3.27
5817 7878 3.004315 CCGCAAACTGTGTAGTCCATTTT 59.996 43.478 0.00 0.00 35.69 1.82
5845 7906 3.253432 GGGCATATAACCAACTGCTTAGC 59.747 47.826 0.00 0.00 35.03 3.09
6990 12199 2.662866 CTGCTGGAATGGGATGACATT 58.337 47.619 0.00 0.00 43.36 2.71
7029 12242 5.047092 GGAATGGGATGACATTGTTCAGTTT 60.047 40.000 0.00 0.00 40.92 2.66
7126 12341 4.991776 TCAATATTGTGACCCTGTTTCCA 58.008 39.130 14.97 0.00 0.00 3.53
7506 12726 7.624360 TGAGTGTAAGTTTTGTGTGAATTCT 57.376 32.000 7.05 0.00 0.00 2.40
7706 12926 6.252995 TCTTTAGGGGTAAAATTGATGCACT 58.747 36.000 0.00 0.00 0.00 4.40
8079 13299 5.650703 TCATGGTAGTTTCATCTACTCGACA 59.349 40.000 0.00 0.00 39.85 4.35
8274 13494 1.575576 GACAGGTGCAGCAGCTTGAG 61.576 60.000 24.71 15.76 40.40 3.02
8313 13533 0.856982 AATTGGTGGGGAACTGTGGA 59.143 50.000 0.00 0.00 0.00 4.02
8541 13764 2.195922 CACTGCAGCAAAGAACAAACC 58.804 47.619 15.27 0.00 0.00 3.27
8556 13779 0.322008 AAACCAGAGTAGCTGCTGCC 60.322 55.000 9.82 5.30 43.50 4.85
8592 13815 6.529125 CCATGTCTGTTTTGTAATGAATGAGC 59.471 38.462 0.00 0.00 0.00 4.26
8628 13851 6.795098 TCGTATGAAGCAACTGTTGTAATT 57.205 33.333 20.57 13.31 0.00 1.40
8632 13855 4.858935 TGAAGCAACTGTTGTAATTCAGC 58.141 39.130 22.32 9.39 35.37 4.26
8633 13856 4.580167 TGAAGCAACTGTTGTAATTCAGCT 59.420 37.500 22.32 11.05 35.37 4.24
8634 13857 4.494350 AGCAACTGTTGTAATTCAGCTG 57.506 40.909 20.57 7.63 35.37 4.24
8635 13858 4.136796 AGCAACTGTTGTAATTCAGCTGA 58.863 39.130 20.57 13.74 35.37 4.26
8636 13859 4.023707 AGCAACTGTTGTAATTCAGCTGAC 60.024 41.667 18.03 6.07 35.37 3.51
8637 13860 4.261155 GCAACTGTTGTAATTCAGCTGACA 60.261 41.667 18.03 9.08 35.37 3.58
8638 13861 5.733091 GCAACTGTTGTAATTCAGCTGACAA 60.733 40.000 18.03 15.08 35.37 3.18
8639 13862 6.264832 CAACTGTTGTAATTCAGCTGACAAA 58.735 36.000 18.03 1.61 33.82 2.83
8640 13863 5.821204 ACTGTTGTAATTCAGCTGACAAAC 58.179 37.500 18.03 14.53 33.82 2.93
8641 13864 5.181690 TGTTGTAATTCAGCTGACAAACC 57.818 39.130 18.03 7.66 33.82 3.27
8642 13865 4.642437 TGTTGTAATTCAGCTGACAAACCA 59.358 37.500 18.03 10.10 33.82 3.67
8643 13866 5.215160 GTTGTAATTCAGCTGACAAACCAG 58.785 41.667 18.03 0.00 33.82 4.00
8644 13867 4.713553 TGTAATTCAGCTGACAAACCAGA 58.286 39.130 18.03 0.00 36.29 3.86
8645 13868 4.756642 TGTAATTCAGCTGACAAACCAGAG 59.243 41.667 18.03 0.00 36.29 3.35
8646 13869 3.498774 ATTCAGCTGACAAACCAGAGT 57.501 42.857 18.03 0.00 36.29 3.24
8647 13870 4.623932 ATTCAGCTGACAAACCAGAGTA 57.376 40.909 18.03 0.00 36.29 2.59
8648 13871 3.667497 TCAGCTGACAAACCAGAGTAG 57.333 47.619 13.74 0.00 36.29 2.57
8649 13872 2.072298 CAGCTGACAAACCAGAGTAGC 58.928 52.381 8.42 0.00 36.29 3.58
8650 13873 1.974236 AGCTGACAAACCAGAGTAGCT 59.026 47.619 0.00 0.00 36.29 3.32
8651 13874 2.072298 GCTGACAAACCAGAGTAGCTG 58.928 52.381 0.00 0.00 44.49 4.24
8652 13875 2.072298 CTGACAAACCAGAGTAGCTGC 58.928 52.381 0.00 0.00 43.50 5.25
8653 13876 1.694150 TGACAAACCAGAGTAGCTGCT 59.306 47.619 3.08 3.08 43.50 4.24
8654 13877 2.072298 GACAAACCAGAGTAGCTGCTG 58.928 52.381 9.82 7.56 43.50 4.41
8655 13878 0.801251 CAAACCAGAGTAGCTGCTGC 59.199 55.000 9.82 11.60 43.50 5.25
8656 13879 0.322008 AAACCAGAGTAGCTGCTGCC 60.322 55.000 9.82 5.30 43.50 4.85
8657 13880 1.483595 AACCAGAGTAGCTGCTGCCA 61.484 55.000 9.82 0.00 43.50 4.92
8658 13881 1.297689 CCAGAGTAGCTGCTGCCAA 59.702 57.895 9.82 0.00 43.50 4.52
8659 13882 1.023513 CCAGAGTAGCTGCTGCCAAC 61.024 60.000 9.82 10.89 43.50 3.77
8660 13883 0.036577 CAGAGTAGCTGCTGCCAACT 60.037 55.000 9.82 17.52 40.80 3.16
8661 13884 0.036577 AGAGTAGCTGCTGCCAACTG 60.037 55.000 21.02 0.00 40.80 3.16
8662 13885 0.321122 GAGTAGCTGCTGCCAACTGT 60.321 55.000 21.02 2.49 40.80 3.55
8663 13886 0.109342 AGTAGCTGCTGCCAACTGTT 59.891 50.000 13.43 0.00 40.80 3.16
8664 13887 0.954452 GTAGCTGCTGCCAACTGTTT 59.046 50.000 13.43 0.00 40.80 2.83
8665 13888 0.953727 TAGCTGCTGCCAACTGTTTG 59.046 50.000 13.43 0.00 40.80 2.93
8666 13889 1.952635 GCTGCTGCCAACTGTTTGC 60.953 57.895 9.45 9.45 0.00 3.68
8667 13890 1.300388 CTGCTGCCAACTGTTTGCC 60.300 57.895 13.26 0.85 0.00 4.52
8668 13891 2.029518 GCTGCCAACTGTTTGCCC 59.970 61.111 13.26 2.14 0.00 5.36
8669 13892 2.795110 GCTGCCAACTGTTTGCCCA 61.795 57.895 13.26 0.00 0.00 5.36
8670 13893 2.051941 CTGCCAACTGTTTGCCCAT 58.948 52.632 13.26 0.00 0.00 4.00
8671 13894 0.320073 CTGCCAACTGTTTGCCCATG 60.320 55.000 13.26 0.00 0.00 3.66
8672 13895 1.047596 TGCCAACTGTTTGCCCATGT 61.048 50.000 13.26 0.00 0.00 3.21
8673 13896 0.319813 GCCAACTGTTTGCCCATGTC 60.320 55.000 5.35 0.00 0.00 3.06
8674 13897 1.331214 CCAACTGTTTGCCCATGTCT 58.669 50.000 0.00 0.00 0.00 3.41
8675 13898 1.000060 CCAACTGTTTGCCCATGTCTG 60.000 52.381 0.00 0.00 0.00 3.51
8676 13899 1.682854 CAACTGTTTGCCCATGTCTGT 59.317 47.619 0.00 0.00 0.00 3.41
8677 13900 2.071778 ACTGTTTGCCCATGTCTGTT 57.928 45.000 0.00 0.00 0.00 3.16
8678 13901 2.387757 ACTGTTTGCCCATGTCTGTTT 58.612 42.857 0.00 0.00 0.00 2.83
8679 13902 2.765699 ACTGTTTGCCCATGTCTGTTTT 59.234 40.909 0.00 0.00 0.00 2.43
8680 13903 3.125316 CTGTTTGCCCATGTCTGTTTTG 58.875 45.455 0.00 0.00 0.00 2.44
8681 13904 2.499289 TGTTTGCCCATGTCTGTTTTGT 59.501 40.909 0.00 0.00 0.00 2.83
8682 13905 3.701542 TGTTTGCCCATGTCTGTTTTGTA 59.298 39.130 0.00 0.00 0.00 2.41
8683 13906 4.160439 TGTTTGCCCATGTCTGTTTTGTAA 59.840 37.500 0.00 0.00 0.00 2.41
8684 13907 5.163364 TGTTTGCCCATGTCTGTTTTGTAAT 60.163 36.000 0.00 0.00 0.00 1.89
8685 13908 4.517952 TGCCCATGTCTGTTTTGTAATG 57.482 40.909 0.00 0.00 0.00 1.90
8686 13909 4.148079 TGCCCATGTCTGTTTTGTAATGA 58.852 39.130 0.00 0.00 0.00 2.57
8687 13910 4.586421 TGCCCATGTCTGTTTTGTAATGAA 59.414 37.500 0.00 0.00 0.00 2.57
8688 13911 5.245751 TGCCCATGTCTGTTTTGTAATGAAT 59.754 36.000 0.00 0.00 0.00 2.57
8689 13912 5.577945 GCCCATGTCTGTTTTGTAATGAATG 59.422 40.000 0.00 0.00 0.00 2.67
8690 13913 6.572119 GCCCATGTCTGTTTTGTAATGAATGA 60.572 38.462 0.00 0.00 0.00 2.57
8691 13914 7.031372 CCCATGTCTGTTTTGTAATGAATGAG 58.969 38.462 0.00 0.00 0.00 2.90
8692 13915 6.529125 CCATGTCTGTTTTGTAATGAATGAGC 59.471 38.462 0.00 0.00 0.00 4.26
8693 13916 5.688823 TGTCTGTTTTGTAATGAATGAGCG 58.311 37.500 0.00 0.00 0.00 5.03
8694 13917 5.468409 TGTCTGTTTTGTAATGAATGAGCGA 59.532 36.000 0.00 0.00 0.00 4.93
8695 13918 6.017523 TGTCTGTTTTGTAATGAATGAGCGAA 60.018 34.615 0.00 0.00 0.00 4.70
8696 13919 6.303259 GTCTGTTTTGTAATGAATGAGCGAAC 59.697 38.462 0.00 0.00 0.00 3.95
8697 13920 5.457140 TGTTTTGTAATGAATGAGCGAACC 58.543 37.500 0.00 0.00 0.00 3.62
8698 13921 5.240623 TGTTTTGTAATGAATGAGCGAACCT 59.759 36.000 0.00 0.00 0.00 3.50
8699 13922 6.428465 TGTTTTGTAATGAATGAGCGAACCTA 59.572 34.615 0.00 0.00 0.00 3.08
8700 13923 7.120579 TGTTTTGTAATGAATGAGCGAACCTAT 59.879 33.333 0.00 0.00 0.00 2.57
8701 13924 6.844696 TTGTAATGAATGAGCGAACCTATC 57.155 37.500 0.00 0.00 0.00 2.08
8702 13925 5.912892 TGTAATGAATGAGCGAACCTATCA 58.087 37.500 0.00 0.00 0.00 2.15
8703 13926 5.985530 TGTAATGAATGAGCGAACCTATCAG 59.014 40.000 0.00 0.00 0.00 2.90
8704 13927 4.679373 ATGAATGAGCGAACCTATCAGT 57.321 40.909 0.00 0.00 0.00 3.41
8705 13928 4.471904 TGAATGAGCGAACCTATCAGTT 57.528 40.909 0.00 0.00 0.00 3.16
8706 13929 4.433615 TGAATGAGCGAACCTATCAGTTC 58.566 43.478 0.00 0.00 42.25 3.01
8715 13938 5.891810 GAACCTATCAGTTCGTATGAAGC 57.108 43.478 0.00 0.00 37.04 3.86
8716 13939 5.339008 AACCTATCAGTTCGTATGAAGCA 57.661 39.130 0.00 0.00 33.98 3.91
8717 13940 5.339008 ACCTATCAGTTCGTATGAAGCAA 57.661 39.130 0.00 0.00 33.98 3.91
8718 13941 5.109903 ACCTATCAGTTCGTATGAAGCAAC 58.890 41.667 0.00 0.00 33.98 4.17
8719 13942 5.105310 ACCTATCAGTTCGTATGAAGCAACT 60.105 40.000 0.00 0.00 33.98 3.16
8720 13943 5.233050 CCTATCAGTTCGTATGAAGCAACTG 59.767 44.000 7.82 7.82 44.76 3.16
8721 13944 3.990092 TCAGTTCGTATGAAGCAACTGT 58.010 40.909 12.19 0.00 44.09 3.55
8722 13945 4.377021 TCAGTTCGTATGAAGCAACTGTT 58.623 39.130 12.19 0.00 44.09 3.16
8723 13946 4.211164 TCAGTTCGTATGAAGCAACTGTTG 59.789 41.667 15.98 15.98 44.09 3.33
8724 13947 4.024893 CAGTTCGTATGAAGCAACTGTTGT 60.025 41.667 20.57 2.90 40.51 3.32
8725 13948 5.176774 CAGTTCGTATGAAGCAACTGTTGTA 59.823 40.000 20.57 3.37 40.51 2.41
8726 13949 5.756347 AGTTCGTATGAAGCAACTGTTGTAA 59.244 36.000 20.57 5.86 33.98 2.41
8727 13950 6.426937 AGTTCGTATGAAGCAACTGTTGTAAT 59.573 34.615 20.57 11.82 33.98 1.89
8728 13951 6.795098 TCGTATGAAGCAACTGTTGTAATT 57.205 33.333 20.57 13.31 0.00 1.40
8729 13952 6.827641 TCGTATGAAGCAACTGTTGTAATTC 58.172 36.000 20.57 19.80 0.00 2.17
8730 13953 6.425417 TCGTATGAAGCAACTGTTGTAATTCA 59.575 34.615 25.40 25.40 35.68 2.57
8731 13954 6.738200 CGTATGAAGCAACTGTTGTAATTCAG 59.262 38.462 26.24 17.18 35.14 3.02
8737 13960 5.180117 AGCAACTGTTGTAATTCAGCTGTAG 59.820 40.000 20.57 2.56 38.13 2.74
8741 13964 4.641396 TGTTGTAATTCAGCTGTAGCAGT 58.359 39.130 14.67 0.00 45.16 4.40
9039 14262 0.035739 TTAGGCCAACTCGAACCCAC 59.964 55.000 5.01 0.00 0.00 4.61
9044 14267 0.036164 CCAACTCGAACCCACCATCA 59.964 55.000 0.00 0.00 0.00 3.07
9045 14268 1.340017 CCAACTCGAACCCACCATCAT 60.340 52.381 0.00 0.00 0.00 2.45
9056 14279 1.670811 CCACCATCATAAAGGCACGTC 59.329 52.381 0.00 0.00 0.00 4.34
9057 14280 2.632377 CACCATCATAAAGGCACGTCT 58.368 47.619 0.00 0.00 0.00 4.18
9109 14332 0.110238 CAATGAAAGTGTGTCCGGCG 60.110 55.000 0.00 0.00 0.00 6.46
9135 14358 2.825387 GGATGCGCTGGACATGCA 60.825 61.111 9.73 0.00 43.67 3.96
9142 14365 0.673333 CGCTGGACATGCACCTAACA 60.673 55.000 10.23 0.00 0.00 2.41
9247 14516 5.762179 TCCCTAGAAGAGCAAGATCAAAA 57.238 39.130 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.553459 TGCCTATTTGTTTCTTTGTTTTCAAA 57.447 26.923 0.00 0.00 45.96 2.69
5 6 8.037758 TCTGCCTATTTGTTTCTTTGTTTTCAA 58.962 29.630 0.00 0.00 38.10 2.69
6 7 7.551585 TCTGCCTATTTGTTTCTTTGTTTTCA 58.448 30.769 0.00 0.00 0.00 2.69
7 8 8.490355 CATCTGCCTATTTGTTTCTTTGTTTTC 58.510 33.333 0.00 0.00 0.00 2.29
8 9 7.442062 CCATCTGCCTATTTGTTTCTTTGTTTT 59.558 33.333 0.00 0.00 0.00 2.43
9 10 6.930722 CCATCTGCCTATTTGTTTCTTTGTTT 59.069 34.615 0.00 0.00 0.00 2.83
10 11 6.458210 CCATCTGCCTATTTGTTTCTTTGTT 58.542 36.000 0.00 0.00 0.00 2.83
11 12 5.047092 CCCATCTGCCTATTTGTTTCTTTGT 60.047 40.000 0.00 0.00 0.00 2.83
12 13 5.413499 CCCATCTGCCTATTTGTTTCTTTG 58.587 41.667 0.00 0.00 0.00 2.77
13 14 4.081476 GCCCATCTGCCTATTTGTTTCTTT 60.081 41.667 0.00 0.00 0.00 2.52
14 15 3.448660 GCCCATCTGCCTATTTGTTTCTT 59.551 43.478 0.00 0.00 0.00 2.52
15 16 3.026694 GCCCATCTGCCTATTTGTTTCT 58.973 45.455 0.00 0.00 0.00 2.52
16 17 3.443099 GCCCATCTGCCTATTTGTTTC 57.557 47.619 0.00 0.00 0.00 2.78
63 64 2.251371 GTGTTCTCGCAAACGGGC 59.749 61.111 0.00 0.00 40.58 6.13
64 65 1.597027 AGGTGTTCTCGCAAACGGG 60.597 57.895 0.00 0.00 42.86 5.28
65 66 1.157870 ACAGGTGTTCTCGCAAACGG 61.158 55.000 0.00 0.00 40.63 4.44
66 67 1.493772 TACAGGTGTTCTCGCAAACG 58.506 50.000 0.00 0.00 42.01 3.60
67 68 2.348218 CGTTACAGGTGTTCTCGCAAAC 60.348 50.000 0.00 0.00 0.00 2.93
68 69 1.862201 CGTTACAGGTGTTCTCGCAAA 59.138 47.619 0.00 0.00 0.00 3.68
69 70 1.493772 CGTTACAGGTGTTCTCGCAA 58.506 50.000 0.00 0.00 0.00 4.85
70 71 0.319211 CCGTTACAGGTGTTCTCGCA 60.319 55.000 0.00 0.00 0.00 5.10
71 72 1.012486 CCCGTTACAGGTGTTCTCGC 61.012 60.000 0.00 0.00 0.00 5.03
72 73 0.389426 CCCCGTTACAGGTGTTCTCG 60.389 60.000 0.00 0.00 0.00 4.04
73 74 0.036671 CCCCCGTTACAGGTGTTCTC 60.037 60.000 0.00 0.00 0.00 2.87
74 75 0.472352 TCCCCCGTTACAGGTGTTCT 60.472 55.000 0.00 0.00 0.00 3.01
75 76 0.397564 TTCCCCCGTTACAGGTGTTC 59.602 55.000 0.00 0.00 0.00 3.18
76 77 0.109153 GTTCCCCCGTTACAGGTGTT 59.891 55.000 0.00 0.00 0.00 3.32
77 78 1.756665 GTTCCCCCGTTACAGGTGT 59.243 57.895 0.00 0.00 0.00 4.16
78 79 1.002990 GGTTCCCCCGTTACAGGTG 60.003 63.158 0.00 0.00 0.00 4.00
79 80 1.461849 TGGTTCCCCCGTTACAGGT 60.462 57.895 0.00 0.00 35.15 4.00
80 81 1.298667 CTGGTTCCCCCGTTACAGG 59.701 63.158 0.00 0.00 35.15 4.00
81 82 1.376812 GCTGGTTCCCCCGTTACAG 60.377 63.158 0.00 0.00 35.15 2.74
82 83 2.751688 GCTGGTTCCCCCGTTACA 59.248 61.111 0.00 0.00 35.15 2.41
83 84 2.045634 GGCTGGTTCCCCCGTTAC 60.046 66.667 0.00 0.00 35.15 2.50
84 85 3.708544 CGGCTGGTTCCCCCGTTA 61.709 66.667 9.01 0.00 37.36 3.18
89 90 4.678743 AAAGGCGGCTGGTTCCCC 62.679 66.667 14.21 0.00 0.00 4.81
90 91 2.600470 AAAAGGCGGCTGGTTCCC 60.600 61.111 14.21 0.00 0.00 3.97
91 92 1.587043 GAGAAAAGGCGGCTGGTTCC 61.587 60.000 23.86 15.43 0.00 3.62
92 93 0.606673 AGAGAAAAGGCGGCTGGTTC 60.607 55.000 21.45 21.45 0.00 3.62
93 94 0.890996 CAGAGAAAAGGCGGCTGGTT 60.891 55.000 14.21 10.39 0.00 3.67
94 95 1.302832 CAGAGAAAAGGCGGCTGGT 60.303 57.895 14.21 2.60 0.00 4.00
95 96 2.042831 CCAGAGAAAAGGCGGCTGG 61.043 63.158 14.21 4.19 40.03 4.85
96 97 2.042831 CCCAGAGAAAAGGCGGCTG 61.043 63.158 14.21 0.00 0.00 4.85
97 98 2.352805 CCCAGAGAAAAGGCGGCT 59.647 61.111 5.25 5.25 0.00 5.52
98 99 2.558380 ATCCCCAGAGAAAAGGCGGC 62.558 60.000 0.00 0.00 0.00 6.53
99 100 0.749454 CATCCCCAGAGAAAAGGCGG 60.749 60.000 0.00 0.00 0.00 6.13
104 105 4.093472 TCGTTTTCATCCCCAGAGAAAA 57.907 40.909 0.00 0.00 38.50 2.29
106 107 3.674997 CTTCGTTTTCATCCCCAGAGAA 58.325 45.455 0.00 0.00 0.00 2.87
112 113 0.675522 TCCGCTTCGTTTTCATCCCC 60.676 55.000 0.00 0.00 0.00 4.81
125 126 1.957695 GTTCCGTCCGTTTCCGCTT 60.958 57.895 0.00 0.00 0.00 4.68
231 234 2.342648 GCTCCGTGTCCGTTTCCT 59.657 61.111 0.00 0.00 0.00 3.36
279 282 5.465935 GGTTTTTAAGTTCCGATCAATGCA 58.534 37.500 0.00 0.00 0.00 3.96
434 439 3.492102 ACCACACATGTACTCAGCTTT 57.508 42.857 0.00 0.00 0.00 3.51
503 508 3.935818 TGTAGTCCAACCACCAAAGAA 57.064 42.857 0.00 0.00 0.00 2.52
543 548 9.289303 CCGTGAATATGGAATTTCTGTTTTTAG 57.711 33.333 0.00 0.00 34.72 1.85
599 609 2.828874 GAAACGGTGTTTTTCGGTGA 57.171 45.000 0.00 0.00 0.00 4.02
656 669 6.954297 GGAAACGAAAATTTGCAAAACGTAAA 59.046 30.769 24.87 3.00 33.46 2.01
659 672 4.888106 GGAAACGAAAATTTGCAAAACGT 58.112 34.783 17.19 20.09 30.81 3.99
708 728 5.247337 GGATGAAAATGGGGTGGAAACTTTA 59.753 40.000 0.00 0.00 0.00 1.85
720 740 4.464947 GGAGAAGTAGGGATGAAAATGGG 58.535 47.826 0.00 0.00 0.00 4.00
743 763 1.246056 TACTCCCGAGTCCCAACACG 61.246 60.000 0.00 0.00 42.54 4.49
744 764 0.531200 CTACTCCCGAGTCCCAACAC 59.469 60.000 0.00 0.00 42.54 3.32
745 765 0.406750 TCTACTCCCGAGTCCCAACA 59.593 55.000 0.00 0.00 42.54 3.33
746 766 1.104630 CTCTACTCCCGAGTCCCAAC 58.895 60.000 0.00 0.00 42.54 3.77
747 767 0.702902 ACTCTACTCCCGAGTCCCAA 59.297 55.000 0.00 0.00 42.54 4.12
748 768 0.702902 AACTCTACTCCCGAGTCCCA 59.297 55.000 0.00 0.00 40.65 4.37
749 769 1.104630 CAACTCTACTCCCGAGTCCC 58.895 60.000 0.00 0.00 40.65 4.46
750 770 1.104630 CCAACTCTACTCCCGAGTCC 58.895 60.000 0.00 0.00 40.65 3.85
751 771 2.125773 TCCAACTCTACTCCCGAGTC 57.874 55.000 0.00 0.00 40.65 3.36
752 772 2.761208 CAATCCAACTCTACTCCCGAGT 59.239 50.000 2.41 2.41 43.20 4.18
753 773 2.101582 CCAATCCAACTCTACTCCCGAG 59.898 54.545 0.00 0.00 34.70 4.63
754 774 2.108168 CCAATCCAACTCTACTCCCGA 58.892 52.381 0.00 0.00 0.00 5.14
755 775 1.139058 CCCAATCCAACTCTACTCCCG 59.861 57.143 0.00 0.00 0.00 5.14
756 776 1.134068 GCCCAATCCAACTCTACTCCC 60.134 57.143 0.00 0.00 0.00 4.30
757 777 1.840635 AGCCCAATCCAACTCTACTCC 59.159 52.381 0.00 0.00 0.00 3.85
758 778 2.237392 ACAGCCCAATCCAACTCTACTC 59.763 50.000 0.00 0.00 0.00 2.59
759 779 2.026822 CACAGCCCAATCCAACTCTACT 60.027 50.000 0.00 0.00 0.00 2.57
760 780 2.359900 CACAGCCCAATCCAACTCTAC 58.640 52.381 0.00 0.00 0.00 2.59
761 781 1.340017 GCACAGCCCAATCCAACTCTA 60.340 52.381 0.00 0.00 0.00 2.43
762 782 0.610232 GCACAGCCCAATCCAACTCT 60.610 55.000 0.00 0.00 0.00 3.24
763 783 0.895100 TGCACAGCCCAATCCAACTC 60.895 55.000 0.00 0.00 0.00 3.01
764 784 1.153524 TGCACAGCCCAATCCAACT 59.846 52.632 0.00 0.00 0.00 3.16
765 785 1.290009 GTGCACAGCCCAATCCAAC 59.710 57.895 13.17 0.00 0.00 3.77
766 786 1.907807 GGTGCACAGCCCAATCCAA 60.908 57.895 20.43 0.00 0.00 3.53
767 787 1.496444 TAGGTGCACAGCCCAATCCA 61.496 55.000 20.43 0.00 0.00 3.41
768 788 0.106519 ATAGGTGCACAGCCCAATCC 60.107 55.000 20.43 0.00 0.00 3.01
769 789 1.027357 CATAGGTGCACAGCCCAATC 58.973 55.000 20.43 0.00 0.00 2.67
770 790 0.625316 TCATAGGTGCACAGCCCAAT 59.375 50.000 20.43 0.00 0.00 3.16
771 791 0.403655 TTCATAGGTGCACAGCCCAA 59.596 50.000 20.43 2.32 0.00 4.12
772 792 0.625316 ATTCATAGGTGCACAGCCCA 59.375 50.000 20.43 0.00 0.00 5.36
773 793 1.312815 GATTCATAGGTGCACAGCCC 58.687 55.000 20.43 0.04 0.00 5.19
774 794 0.940126 CGATTCATAGGTGCACAGCC 59.060 55.000 20.43 0.48 0.00 4.85
775 795 1.594862 GACGATTCATAGGTGCACAGC 59.405 52.381 20.43 1.46 0.00 4.40
776 796 2.892374 TGACGATTCATAGGTGCACAG 58.108 47.619 20.43 5.33 0.00 3.66
777 797 3.326836 TTGACGATTCATAGGTGCACA 57.673 42.857 20.43 0.00 0.00 4.57
778 798 4.678509 TTTTGACGATTCATAGGTGCAC 57.321 40.909 8.80 8.80 0.00 4.57
779 799 4.940654 TGATTTTGACGATTCATAGGTGCA 59.059 37.500 0.00 0.00 0.00 4.57
780 800 5.484173 TGATTTTGACGATTCATAGGTGC 57.516 39.130 0.00 0.00 0.00 5.01
781 801 7.225341 TGAGATGATTTTGACGATTCATAGGTG 59.775 37.037 0.00 0.00 0.00 4.00
782 802 7.275183 TGAGATGATTTTGACGATTCATAGGT 58.725 34.615 0.00 0.00 0.00 3.08
903 923 0.929615 CAACAAAACCGCAAAGCCTG 59.070 50.000 0.00 0.00 0.00 4.85
1371 1409 4.100035 TCTTCATCACCAGCCTAGTACATG 59.900 45.833 0.00 0.00 0.00 3.21
1494 1534 1.065564 GCTTCAGAGAGCCACCAGAAT 60.066 52.381 0.00 0.00 36.66 2.40
1755 1945 6.974622 CCAACACACAATTCAAAGGATATAGC 59.025 38.462 0.00 0.00 0.00 2.97
1756 1946 8.279970 TCCAACACACAATTCAAAGGATATAG 57.720 34.615 0.00 0.00 0.00 1.31
1757 1947 8.821686 ATCCAACACACAATTCAAAGGATATA 57.178 30.769 0.00 0.00 31.97 0.86
1758 1948 7.147846 GGATCCAACACACAATTCAAAGGATAT 60.148 37.037 6.95 0.00 33.77 1.63
1759 1949 6.152661 GGATCCAACACACAATTCAAAGGATA 59.847 38.462 6.95 0.00 33.77 2.59
1886 2079 5.613358 ACAGAAGCGACAAGGAAAATAAG 57.387 39.130 0.00 0.00 0.00 1.73
2168 2366 2.569404 ACCTTCTAGAGTTGGAAGCAGG 59.431 50.000 13.27 7.44 39.75 4.85
2285 2483 7.175641 AGACAGGAACATCTCTTACCAAAAATG 59.824 37.037 0.00 0.00 0.00 2.32
2693 2892 9.785982 ACTCCCTAAATGCTCTTATATTTCTTC 57.214 33.333 0.00 0.00 0.00 2.87
2846 3045 8.736244 GGCATTAACTAATCAACTACCTCAAAA 58.264 33.333 0.00 0.00 0.00 2.44
3241 3525 8.324306 ACTTGAATCTCCAATGAAAGATGAGTA 58.676 33.333 0.09 0.00 32.62 2.59
3409 3693 9.857957 ACTTCTGTAGCTATGTACTTTTAGAAC 57.142 33.333 0.00 0.00 0.00 3.01
3666 5663 4.854173 TGCAGGGCTAAATATGAAACTCA 58.146 39.130 0.00 0.00 0.00 3.41
4273 6285 1.729470 CTCACGTGAGAGGATCGGGG 61.729 65.000 36.73 9.65 44.74 5.73
4607 6660 7.707104 ACAAGGTTATGACTCTTTTTCTTGTG 58.293 34.615 0.00 0.00 40.15 3.33
4608 6661 7.556275 TGACAAGGTTATGACTCTTTTTCTTGT 59.444 33.333 0.00 0.00 43.00 3.16
4609 6662 7.857885 GTGACAAGGTTATGACTCTTTTTCTTG 59.142 37.037 0.00 0.00 36.25 3.02
4610 6663 7.254795 CGTGACAAGGTTATGACTCTTTTTCTT 60.255 37.037 0.00 0.00 0.00 2.52
4611 6664 6.202954 CGTGACAAGGTTATGACTCTTTTTCT 59.797 38.462 0.00 0.00 0.00 2.52
4612 6665 6.202188 TCGTGACAAGGTTATGACTCTTTTTC 59.798 38.462 0.00 0.00 0.00 2.29
4613 6666 6.053005 TCGTGACAAGGTTATGACTCTTTTT 58.947 36.000 0.00 0.00 0.00 1.94
4614 6667 5.607477 TCGTGACAAGGTTATGACTCTTTT 58.393 37.500 0.00 0.00 0.00 2.27
4615 6668 5.209818 TCGTGACAAGGTTATGACTCTTT 57.790 39.130 0.00 0.00 0.00 2.52
4616 6669 4.866508 TCGTGACAAGGTTATGACTCTT 57.133 40.909 0.00 0.00 0.00 2.85
4617 6670 4.382040 CCATCGTGACAAGGTTATGACTCT 60.382 45.833 0.00 0.00 0.00 3.24
4618 6671 3.865745 CCATCGTGACAAGGTTATGACTC 59.134 47.826 0.00 0.00 0.00 3.36
4624 6677 4.098960 GTCCTATCCATCGTGACAAGGTTA 59.901 45.833 0.00 0.00 0.00 2.85
4849 6902 2.028567 GCCCATATCAGCCTAGTCACTC 60.029 54.545 0.00 0.00 0.00 3.51
4959 7014 2.026945 AAAGCACAACGCCAAAGGGG 62.027 55.000 0.00 0.00 44.04 4.79
5073 7128 2.665649 TACATCCGTTTGAGCGACAT 57.334 45.000 0.00 0.00 0.00 3.06
5115 7170 2.936498 CCGGAAATACTTGTCGCTCAAT 59.064 45.455 0.00 0.00 35.35 2.57
5282 7339 0.885196 AACGCCACACAACAACAACT 59.115 45.000 0.00 0.00 0.00 3.16
5283 7340 0.988439 CAACGCCACACAACAACAAC 59.012 50.000 0.00 0.00 0.00 3.32
5284 7341 0.598562 ACAACGCCACACAACAACAA 59.401 45.000 0.00 0.00 0.00 2.83
5285 7342 0.598562 AACAACGCCACACAACAACA 59.401 45.000 0.00 0.00 0.00 3.33
5466 7527 5.050567 CCACACTACAAAGAAAACGGTAGTC 60.051 44.000 0.00 0.00 43.22 2.59
5664 7725 5.064579 TGTTTGGTACATGTCATATCTTGCG 59.935 40.000 0.00 0.00 39.30 4.85
5776 7837 3.470709 CGGACATCTATCCAAGCAATGT 58.529 45.455 0.00 0.00 38.87 2.71
5845 7906 3.893720 CAGTAGCAACAAAAGGCTTCTG 58.106 45.455 0.00 0.00 44.94 3.02
5904 7965 0.322322 ACGACCACGGCCTGAAATTA 59.678 50.000 0.00 0.00 44.46 1.40
6350 11534 5.952347 AGCTATATCCAATGTACTCCGATCA 59.048 40.000 0.00 0.00 0.00 2.92
7111 12326 1.140852 CTCTGTGGAAACAGGGTCACA 59.859 52.381 6.06 0.00 44.46 3.58
7126 12341 5.707298 CAGGTGGTTTAATCATGTTCTCTGT 59.293 40.000 0.00 0.00 0.00 3.41
7506 12726 7.148188 GCAGGATTTATTGAGAAGTCACAATCA 60.148 37.037 7.16 0.00 38.02 2.57
7706 12926 5.474532 CCAAAAATGAGGATCTTCAGTGTCA 59.525 40.000 13.44 0.00 34.92 3.58
8079 13299 1.918262 TGCAGTTGAATCCCAGGATCT 59.082 47.619 0.00 0.00 33.08 2.75
8307 13527 4.631131 TCTACAACACATCAACTCCACAG 58.369 43.478 0.00 0.00 0.00 3.66
8313 13533 8.077991 CACATTTCATTCTACAACACATCAACT 58.922 33.333 0.00 0.00 0.00 3.16
8541 13764 0.036577 AGTTGGCAGCAGCTACTCTG 60.037 55.000 3.63 5.68 45.62 3.35
8556 13779 1.682854 ACAGACATGGGCAAACAGTTG 59.317 47.619 0.00 0.00 37.83 3.16
8628 13851 2.289072 GCTACTCTGGTTTGTCAGCTGA 60.289 50.000 13.74 13.74 34.91 4.26
8632 13855 2.072298 GCAGCTACTCTGGTTTGTCAG 58.928 52.381 0.00 0.00 43.06 3.51
8633 13856 2.169832 GCAGCTACTCTGGTTTGTCA 57.830 50.000 0.00 0.00 43.06 3.58
8640 13863 1.023513 GTTGGCAGCAGCTACTCTGG 61.024 60.000 0.00 0.00 43.06 3.86
8641 13864 0.036577 AGTTGGCAGCAGCTACTCTG 60.037 55.000 3.63 5.68 45.62 3.35
8642 13865 0.036577 CAGTTGGCAGCAGCTACTCT 60.037 55.000 3.63 0.00 41.70 3.24
8643 13866 0.321122 ACAGTTGGCAGCAGCTACTC 60.321 55.000 3.63 0.00 41.70 2.59
8644 13867 0.109342 AACAGTTGGCAGCAGCTACT 59.891 50.000 3.63 2.36 41.70 2.57
8645 13868 0.954452 AAACAGTTGGCAGCAGCTAC 59.046 50.000 3.63 0.00 41.70 3.58
8646 13869 0.953727 CAAACAGTTGGCAGCAGCTA 59.046 50.000 3.63 0.00 41.70 3.32
8647 13870 1.737816 CAAACAGTTGGCAGCAGCT 59.262 52.632 3.63 0.00 41.70 4.24
8648 13871 1.952635 GCAAACAGTTGGCAGCAGC 60.953 57.895 7.89 0.00 41.10 5.25
8649 13872 4.331356 GCAAACAGTTGGCAGCAG 57.669 55.556 7.89 0.00 35.10 4.24
8655 13878 1.000060 CAGACATGGGCAAACAGTTGG 60.000 52.381 0.00 0.00 35.10 3.77
8656 13879 1.682854 ACAGACATGGGCAAACAGTTG 59.317 47.619 0.00 0.00 37.83 3.16
8657 13880 2.071778 ACAGACATGGGCAAACAGTT 57.928 45.000 0.00 0.00 0.00 3.16
8658 13881 2.071778 AACAGACATGGGCAAACAGT 57.928 45.000 0.00 0.00 0.00 3.55
8659 13882 3.125316 CAAAACAGACATGGGCAAACAG 58.875 45.455 0.00 0.00 0.00 3.16
8660 13883 2.499289 ACAAAACAGACATGGGCAAACA 59.501 40.909 0.00 0.00 0.00 2.83
8661 13884 3.177997 ACAAAACAGACATGGGCAAAC 57.822 42.857 0.00 0.00 0.00 2.93
8662 13885 5.069648 TCATTACAAAACAGACATGGGCAAA 59.930 36.000 0.00 0.00 0.00 3.68
8663 13886 4.586421 TCATTACAAAACAGACATGGGCAA 59.414 37.500 0.00 0.00 0.00 4.52
8664 13887 4.148079 TCATTACAAAACAGACATGGGCA 58.852 39.130 0.00 0.00 0.00 5.36
8665 13888 4.782019 TCATTACAAAACAGACATGGGC 57.218 40.909 0.00 0.00 0.00 5.36
8666 13889 6.923012 TCATTCATTACAAAACAGACATGGG 58.077 36.000 0.00 0.00 0.00 4.00
8667 13890 6.529125 GCTCATTCATTACAAAACAGACATGG 59.471 38.462 0.00 0.00 0.00 3.66
8668 13891 6.249893 CGCTCATTCATTACAAAACAGACATG 59.750 38.462 0.00 0.00 0.00 3.21
8669 13892 6.149308 TCGCTCATTCATTACAAAACAGACAT 59.851 34.615 0.00 0.00 0.00 3.06
8670 13893 5.468409 TCGCTCATTCATTACAAAACAGACA 59.532 36.000 0.00 0.00 0.00 3.41
8671 13894 5.927030 TCGCTCATTCATTACAAAACAGAC 58.073 37.500 0.00 0.00 0.00 3.51
8672 13895 6.370593 GTTCGCTCATTCATTACAAAACAGA 58.629 36.000 0.00 0.00 0.00 3.41
8673 13896 5.569059 GGTTCGCTCATTCATTACAAAACAG 59.431 40.000 0.00 0.00 0.00 3.16
8674 13897 5.240623 AGGTTCGCTCATTCATTACAAAACA 59.759 36.000 0.00 0.00 0.00 2.83
8675 13898 5.699839 AGGTTCGCTCATTCATTACAAAAC 58.300 37.500 0.00 0.00 0.00 2.43
8676 13899 5.957842 AGGTTCGCTCATTCATTACAAAA 57.042 34.783 0.00 0.00 0.00 2.44
8677 13900 6.821160 TGATAGGTTCGCTCATTCATTACAAA 59.179 34.615 0.00 0.00 0.00 2.83
8678 13901 6.345298 TGATAGGTTCGCTCATTCATTACAA 58.655 36.000 0.00 0.00 0.00 2.41
8679 13902 5.912892 TGATAGGTTCGCTCATTCATTACA 58.087 37.500 0.00 0.00 0.00 2.41
8680 13903 5.986135 ACTGATAGGTTCGCTCATTCATTAC 59.014 40.000 0.00 0.00 0.00 1.89
8681 13904 6.161855 ACTGATAGGTTCGCTCATTCATTA 57.838 37.500 0.00 0.00 0.00 1.90
8682 13905 5.028549 ACTGATAGGTTCGCTCATTCATT 57.971 39.130 0.00 0.00 0.00 2.57
8683 13906 4.679373 ACTGATAGGTTCGCTCATTCAT 57.321 40.909 0.00 0.00 0.00 2.57
8684 13907 4.433615 GAACTGATAGGTTCGCTCATTCA 58.566 43.478 0.00 0.00 36.65 2.57
8693 13916 5.348986 TGCTTCATACGAACTGATAGGTTC 58.651 41.667 0.00 0.00 41.31 3.62
8694 13917 5.339008 TGCTTCATACGAACTGATAGGTT 57.661 39.130 0.00 0.00 0.00 3.50
8695 13918 5.105310 AGTTGCTTCATACGAACTGATAGGT 60.105 40.000 0.00 0.00 0.00 3.08
8696 13919 5.233050 CAGTTGCTTCATACGAACTGATAGG 59.767 44.000 0.00 0.00 45.38 2.57
8697 13920 5.807520 ACAGTTGCTTCATACGAACTGATAG 59.192 40.000 15.64 4.79 45.38 2.08
8698 13921 5.720202 ACAGTTGCTTCATACGAACTGATA 58.280 37.500 15.64 0.00 45.38 2.15
8699 13922 4.569943 ACAGTTGCTTCATACGAACTGAT 58.430 39.130 15.64 0.49 45.38 2.90
8700 13923 3.990092 ACAGTTGCTTCATACGAACTGA 58.010 40.909 15.64 0.24 45.38 3.41
8702 13925 4.127171 ACAACAGTTGCTTCATACGAACT 58.873 39.130 13.56 0.00 0.00 3.01
8703 13926 4.468095 ACAACAGTTGCTTCATACGAAC 57.532 40.909 13.56 0.00 0.00 3.95
8704 13927 6.795098 ATTACAACAGTTGCTTCATACGAA 57.205 33.333 13.56 0.00 0.00 3.85
8705 13928 6.425417 TGAATTACAACAGTTGCTTCATACGA 59.575 34.615 13.56 0.00 0.00 3.43
8706 13929 6.598525 TGAATTACAACAGTTGCTTCATACG 58.401 36.000 13.56 0.00 0.00 3.06
8707 13930 6.524586 GCTGAATTACAACAGTTGCTTCATAC 59.475 38.462 19.21 13.85 36.62 2.39
8708 13931 6.430925 AGCTGAATTACAACAGTTGCTTCATA 59.569 34.615 19.21 2.83 36.62 2.15
8709 13932 5.242393 AGCTGAATTACAACAGTTGCTTCAT 59.758 36.000 19.21 9.12 36.62 2.57
8710 13933 4.580167 AGCTGAATTACAACAGTTGCTTCA 59.420 37.500 13.56 16.65 36.62 3.02
8711 13934 4.913924 CAGCTGAATTACAACAGTTGCTTC 59.086 41.667 8.42 13.39 38.17 3.86
8712 13935 4.339247 ACAGCTGAATTACAACAGTTGCTT 59.661 37.500 23.35 4.75 44.79 3.91
8713 13936 3.885297 ACAGCTGAATTACAACAGTTGCT 59.115 39.130 23.35 3.65 44.79 3.91
8714 13937 4.228912 ACAGCTGAATTACAACAGTTGC 57.771 40.909 23.35 0.00 44.79 4.17
8715 13938 5.049474 TGCTACAGCTGAATTACAACAGTTG 60.049 40.000 23.35 12.03 45.78 3.16
8716 13939 5.063204 TGCTACAGCTGAATTACAACAGTT 58.937 37.500 23.35 0.00 42.66 3.16
8717 13940 4.641396 TGCTACAGCTGAATTACAACAGT 58.359 39.130 23.35 0.00 42.66 3.55
8718 13941 4.692625 ACTGCTACAGCTGAATTACAACAG 59.307 41.667 23.35 16.40 41.71 3.16
8719 13942 4.641396 ACTGCTACAGCTGAATTACAACA 58.359 39.130 23.35 5.81 41.71 3.33
8720 13943 5.613358 AACTGCTACAGCTGAATTACAAC 57.387 39.130 23.35 1.16 41.71 3.32
8721 13944 5.762711 TCAAACTGCTACAGCTGAATTACAA 59.237 36.000 23.35 0.00 41.71 2.41
8722 13945 5.304778 TCAAACTGCTACAGCTGAATTACA 58.695 37.500 23.35 9.85 41.71 2.41
8723 13946 5.862924 TCAAACTGCTACAGCTGAATTAC 57.137 39.130 23.35 5.39 41.71 1.89
8724 13947 6.127925 CCAATCAAACTGCTACAGCTGAATTA 60.128 38.462 23.35 0.91 41.71 1.40
8725 13948 5.336213 CCAATCAAACTGCTACAGCTGAATT 60.336 40.000 23.35 0.00 41.71 2.17
8726 13949 4.157289 CCAATCAAACTGCTACAGCTGAAT 59.843 41.667 23.35 0.27 41.71 2.57
8727 13950 3.503363 CCAATCAAACTGCTACAGCTGAA 59.497 43.478 23.35 1.71 41.71 3.02
8728 13951 3.076621 CCAATCAAACTGCTACAGCTGA 58.923 45.455 23.35 2.95 41.71 4.26
8729 13952 2.816087 ACCAATCAAACTGCTACAGCTG 59.184 45.455 13.48 13.48 44.21 4.24
8730 13953 3.146104 ACCAATCAAACTGCTACAGCT 57.854 42.857 2.44 0.00 42.66 4.24
8731 13954 3.503748 AGAACCAATCAAACTGCTACAGC 59.496 43.478 0.00 0.00 42.50 4.40
8737 13960 2.555757 AGCAGAGAACCAATCAAACTGC 59.444 45.455 0.00 0.00 44.45 4.40
8741 13964 3.819368 TGACAGCAGAGAACCAATCAAA 58.181 40.909 0.00 0.00 0.00 2.69
8807 14030 1.252215 TGGCCGATCGACCAACACTA 61.252 55.000 21.63 0.00 31.46 2.74
9039 14262 2.632377 ACAGACGTGCCTTTATGATGG 58.368 47.619 0.00 0.00 0.00 3.51
9044 14267 4.024048 CAGACAAAACAGACGTGCCTTTAT 60.024 41.667 0.00 0.00 0.00 1.40
9045 14268 3.311322 CAGACAAAACAGACGTGCCTTTA 59.689 43.478 0.00 0.00 0.00 1.85
9056 14279 5.894807 ACAGACAAAATCCAGACAAAACAG 58.105 37.500 0.00 0.00 0.00 3.16
9057 14280 5.913137 ACAGACAAAATCCAGACAAAACA 57.087 34.783 0.00 0.00 0.00 2.83
9109 14332 1.745087 TCCAGCGCATCCAAGAAAATC 59.255 47.619 11.47 0.00 0.00 2.17
9135 14358 1.618837 AGATGCGTCTGTGTGTTAGGT 59.381 47.619 7.89 0.00 32.13 3.08
9159 14382 2.425592 CACCAGCCGACCTTGACA 59.574 61.111 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.