Multiple sequence alignment - TraesCS7D01G279200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G279200 chr7D 100.000 4354 0 0 779 5132 270160280 270155927 0.000000e+00 8041.0
1 TraesCS7D01G279200 chr7D 91.979 374 27 3 4759 5131 431872748 431872377 5.890000e-144 521.0
2 TraesCS7D01G279200 chr7D 100.000 246 0 0 1 246 270161058 270160813 6.060000e-124 455.0
3 TraesCS7D01G279200 chr7B 96.851 3970 59 19 779 4744 272110016 272106109 0.000000e+00 6578.0
4 TraesCS7D01G279200 chr7B 99.593 246 0 1 1 246 272110374 272110130 1.010000e-121 448.0
5 TraesCS7D01G279200 chr7B 78.261 138 21 5 2274 2408 741932420 741932289 4.260000e-11 80.5
6 TraesCS7D01G279200 chr7A 95.072 2212 64 19 779 2969 299594508 299592321 0.000000e+00 3439.0
7 TraesCS7D01G279200 chr7A 94.507 1784 78 16 2980 4749 299585609 299583832 0.000000e+00 2734.0
8 TraesCS7D01G279200 chr7A 93.029 373 26 0 4760 5132 518520688 518521060 3.490000e-151 545.0
9 TraesCS7D01G279200 chr7A 97.561 246 6 0 1 246 299594859 299594614 6.140000e-114 422.0
10 TraesCS7D01G279200 chr7A 83.333 102 14 3 2274 2373 731975054 731974954 1.970000e-14 91.6
11 TraesCS7D01G279200 chr4D 95.968 372 15 0 4760 5131 149218535 149218906 5.680000e-169 604.0
12 TraesCS7D01G279200 chr6D 93.386 378 20 4 4757 5132 463166060 463166434 5.810000e-154 555.0
13 TraesCS7D01G279200 chr6D 88.204 373 40 4 4760 5131 399755896 399755527 4.720000e-120 442.0
14 TraesCS7D01G279200 chr3D 92.188 384 27 3 4749 5131 461383065 461383446 1.630000e-149 540.0
15 TraesCS7D01G279200 chr3D 82.653 98 10 5 2277 2373 4109167 4109076 4.260000e-11 80.5
16 TraesCS7D01G279200 chr1B 89.182 379 37 4 4756 5132 327029013 327029389 2.160000e-128 470.0
17 TraesCS7D01G279200 chr1B 97.500 40 1 0 1195 1234 200141844 200141805 9.220000e-08 69.4
18 TraesCS7D01G279200 chr2A 89.067 375 38 3 4760 5132 608262192 608261819 3.620000e-126 462.0
19 TraesCS7D01G279200 chr2B 87.166 374 46 2 4760 5132 774081960 774082332 1.710000e-114 424.0
20 TraesCS7D01G279200 chr4A 84.103 195 28 2 3168 3359 719771442 719771636 8.770000e-43 185.0
21 TraesCS7D01G279200 chrUn 78.924 223 39 7 3154 3370 308680878 308681098 1.490000e-30 145.0
22 TraesCS7D01G279200 chrUn 78.924 223 39 7 3154 3370 324198376 324198596 1.490000e-30 145.0
23 TraesCS7D01G279200 chrUn 83.969 131 11 4 2274 2402 103688902 103689024 3.250000e-22 117.0
24 TraesCS7D01G279200 chrUn 77.596 183 25 7 2277 2458 382386094 382386261 4.230000e-16 97.1
25 TraesCS7D01G279200 chr1A 78.924 223 39 7 3154 3370 534915500 534915720 1.490000e-30 145.0
26 TraesCS7D01G279200 chr1A 78.924 223 39 7 3154 3370 534919812 534920032 1.490000e-30 145.0
27 TraesCS7D01G279200 chr1A 78.475 223 40 7 3154 3370 534877524 534877744 6.930000e-29 139.0
28 TraesCS7D01G279200 chr1A 78.475 223 40 7 3154 3370 534896410 534896630 6.930000e-29 139.0
29 TraesCS7D01G279200 chr6A 86.139 101 13 1 2274 2373 28645684 28645584 1.950000e-19 108.0
30 TraesCS7D01G279200 chr3B 77.596 183 25 7 2277 2458 6333235 6333068 4.230000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G279200 chr7D 270155927 270161058 5131 True 4248.0 8041 100.0000 1 5132 2 chr7D.!!$R2 5131
1 TraesCS7D01G279200 chr7B 272106109 272110374 4265 True 3513.0 6578 98.2220 1 4744 2 chr7B.!!$R2 4743
2 TraesCS7D01G279200 chr7A 299583832 299585609 1777 True 2734.0 2734 94.5070 2980 4749 1 chr7A.!!$R1 1769
3 TraesCS7D01G279200 chr7A 299592321 299594859 2538 True 1930.5 3439 96.3165 1 2969 2 chr7A.!!$R3 2968

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
911 912 0.035152 CACTTGGGCATAGCAGACCA 60.035 55.000 0.0 0.0 0.00 4.02 F
912 913 0.921896 ACTTGGGCATAGCAGACCAT 59.078 50.000 0.0 0.0 32.18 3.55 F
2410 2414 1.004277 CCAAAAGTGATTCGGGAGGGA 59.996 52.381 0.0 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2790 2797 1.001764 TGGCAGCAGAATCCACTGG 60.002 57.895 0.0 0.0 38.22 4.00 R
2897 2925 4.071423 TCAATTTCCTTCTGTTGCGATCA 58.929 39.130 0.0 0.0 0.00 2.92 R
4346 4378 2.670414 CACCATTCGAGCAAGAGAGAAC 59.330 50.000 0.0 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
829 830 7.148918 GCACAACTGCTAACAAATTTGTATGAG 60.149 37.037 23.53 19.84 39.42 2.90
898 899 1.604593 CTTCTGGCACCCCACTTGG 60.605 63.158 0.00 0.00 35.79 3.61
909 910 2.785868 CCACTTGGGCATAGCAGAC 58.214 57.895 0.00 0.00 0.00 3.51
910 911 0.749454 CCACTTGGGCATAGCAGACC 60.749 60.000 0.00 0.00 0.00 3.85
911 912 0.035152 CACTTGGGCATAGCAGACCA 60.035 55.000 0.00 0.00 0.00 4.02
912 913 0.921896 ACTTGGGCATAGCAGACCAT 59.078 50.000 0.00 0.00 32.18 3.55
913 914 2.126882 ACTTGGGCATAGCAGACCATA 58.873 47.619 0.00 0.00 32.18 2.74
914 915 2.509548 ACTTGGGCATAGCAGACCATAA 59.490 45.455 0.00 0.00 32.18 1.90
915 916 2.638480 TGGGCATAGCAGACCATAAC 57.362 50.000 0.00 0.00 0.00 1.89
1834 1835 3.967332 ACAATTTTTCCATCCAGGCAG 57.033 42.857 0.00 0.00 37.29 4.85
1863 1864 6.767456 TGTGTTTTGATCCTTTTAATGCCAT 58.233 32.000 0.00 0.00 0.00 4.40
1885 1886 5.342806 TCGATCCAAATATGATTTCGTGC 57.657 39.130 0.00 0.00 0.00 5.34
2123 2127 7.453393 TCCTGAACATAATAATAGGAGCCTTG 58.547 38.462 0.00 0.00 31.19 3.61
2221 2225 2.930950 AGGAAGCAAGCTAAACACACA 58.069 42.857 0.00 0.00 0.00 3.72
2222 2226 2.618709 AGGAAGCAAGCTAAACACACAC 59.381 45.455 0.00 0.00 0.00 3.82
2223 2227 2.357637 GGAAGCAAGCTAAACACACACA 59.642 45.455 0.00 0.00 0.00 3.72
2224 2228 3.363178 GAAGCAAGCTAAACACACACAC 58.637 45.455 0.00 0.00 0.00 3.82
2225 2229 2.364632 AGCAAGCTAAACACACACACA 58.635 42.857 0.00 0.00 0.00 3.72
2226 2230 2.097466 AGCAAGCTAAACACACACACAC 59.903 45.455 0.00 0.00 0.00 3.82
2227 2231 2.159448 GCAAGCTAAACACACACACACA 60.159 45.455 0.00 0.00 0.00 3.72
2410 2414 1.004277 CCAAAAGTGATTCGGGAGGGA 59.996 52.381 0.00 0.00 0.00 4.20
2759 2766 7.283127 AGGATGCCAAGTATTTTGTGTATGTAG 59.717 37.037 0.00 0.00 0.00 2.74
2760 2767 7.282224 GGATGCCAAGTATTTTGTGTATGTAGA 59.718 37.037 0.00 0.00 0.00 2.59
2761 2768 8.752005 ATGCCAAGTATTTTGTGTATGTAGAT 57.248 30.769 0.00 0.00 0.00 1.98
2762 2769 8.574251 TGCCAAGTATTTTGTGTATGTAGATT 57.426 30.769 0.00 0.00 0.00 2.40
2763 2770 8.458052 TGCCAAGTATTTTGTGTATGTAGATTG 58.542 33.333 0.00 0.00 0.00 2.67
2764 2771 8.458843 GCCAAGTATTTTGTGTATGTAGATTGT 58.541 33.333 0.00 0.00 0.00 2.71
3097 3125 1.066573 CGAGCCCTGTTGAACTCAGAT 60.067 52.381 0.00 0.00 35.20 2.90
3373 3405 5.456822 GCGCATTTCATTCCTTCTGATTTAC 59.543 40.000 0.30 0.00 0.00 2.01
3597 3629 5.987953 GCATATGCTCAACTCACTTCTATGA 59.012 40.000 20.64 0.00 38.21 2.15
4182 4214 4.946478 ACCTCCTGTGATGTAATCTAGC 57.054 45.455 0.00 0.00 45.81 3.42
4287 4319 4.214971 CCATGTTCTCACAAGAGGAAACAG 59.785 45.833 0.00 0.00 40.07 3.16
4288 4320 3.206150 TGTTCTCACAAGAGGAAACAGC 58.794 45.455 0.00 0.00 42.34 4.40
4334 4366 9.859692 GAAAGTGTTACTCCGTATTATATTTGC 57.140 33.333 0.00 0.00 0.00 3.68
4415 4447 9.702726 CGTGATTACTCAAAGTGTTTATATTGG 57.297 33.333 0.00 0.00 31.85 3.16
4632 4666 4.091509 CGTGTGCACTTCAGAAGGTTATAC 59.908 45.833 19.41 7.00 0.00 1.47
4640 4674 7.224949 GCACTTCAGAAGGTTATACTGTAATCC 59.775 40.741 14.90 0.00 33.93 3.01
4652 4693 9.740239 GTTATACTGTAATCCGTTAATCACAGA 57.260 33.333 6.54 0.00 0.00 3.41
4665 4706 7.850982 CCGTTAATCACAGAATACTTTACATGC 59.149 37.037 0.00 0.00 0.00 4.06
4671 4712 5.728049 CACAGAATACTTTACATGCGAAACG 59.272 40.000 0.00 0.00 0.00 3.60
4749 4791 2.827800 GATCAAGCCTGATCGATCCA 57.172 50.000 22.31 9.75 46.46 3.41
4750 4792 3.117491 GATCAAGCCTGATCGATCCAA 57.883 47.619 22.31 4.08 46.46 3.53
4751 4793 3.470709 GATCAAGCCTGATCGATCCAAA 58.529 45.455 22.31 3.33 46.46 3.28
4752 4794 2.910199 TCAAGCCTGATCGATCCAAAG 58.090 47.619 22.31 12.90 0.00 2.77
4753 4795 1.332997 CAAGCCTGATCGATCCAAAGC 59.667 52.381 22.31 17.86 0.00 3.51
4754 4796 0.835941 AGCCTGATCGATCCAAAGCT 59.164 50.000 22.31 19.60 0.00 3.74
4755 4797 1.211457 AGCCTGATCGATCCAAAGCTT 59.789 47.619 22.31 0.00 0.00 3.74
4756 4798 1.332997 GCCTGATCGATCCAAAGCTTG 59.667 52.381 22.31 2.89 0.00 4.01
4757 4799 2.636830 CCTGATCGATCCAAAGCTTGT 58.363 47.619 22.31 0.00 0.00 3.16
4758 4800 3.012518 CCTGATCGATCCAAAGCTTGTT 58.987 45.455 22.31 0.00 0.00 2.83
4759 4801 3.441572 CCTGATCGATCCAAAGCTTGTTT 59.558 43.478 22.31 0.00 0.00 2.83
4760 4802 4.082571 CCTGATCGATCCAAAGCTTGTTTT 60.083 41.667 22.31 0.00 0.00 2.43
4761 4803 5.452078 TGATCGATCCAAAGCTTGTTTTT 57.548 34.783 22.31 0.00 0.00 1.94
4784 4826 5.591643 TTTTTCGAGAATATGCCGATAGC 57.408 39.130 0.00 0.00 44.14 2.97
4788 4830 3.099362 CGAGAATATGCCGATAGCGTAC 58.901 50.000 0.00 0.00 45.67 3.67
4789 4831 3.436496 GAGAATATGCCGATAGCGTACC 58.564 50.000 0.00 0.00 45.67 3.34
4790 4832 3.090037 AGAATATGCCGATAGCGTACCT 58.910 45.455 0.00 0.00 45.67 3.08
4791 4833 3.510360 AGAATATGCCGATAGCGTACCTT 59.490 43.478 0.00 0.00 45.67 3.50
4792 4834 4.703575 AGAATATGCCGATAGCGTACCTTA 59.296 41.667 0.00 0.00 45.67 2.69
4793 4835 5.360144 AGAATATGCCGATAGCGTACCTTAT 59.640 40.000 0.00 0.00 45.67 1.73
4794 4836 5.184340 ATATGCCGATAGCGTACCTTATC 57.816 43.478 0.00 0.00 45.67 1.75
4795 4837 4.888239 ATATGCCGATAGCGTACCTTATCT 59.112 41.667 0.00 0.00 45.67 1.98
4796 4838 3.572604 GCCGATAGCGTACCTTATCTT 57.427 47.619 0.00 0.00 35.23 2.40
4797 4839 3.910648 GCCGATAGCGTACCTTATCTTT 58.089 45.455 0.00 0.00 35.23 2.52
4798 4840 5.051891 GCCGATAGCGTACCTTATCTTTA 57.948 43.478 0.00 0.00 35.23 1.85
4799 4841 5.648572 GCCGATAGCGTACCTTATCTTTAT 58.351 41.667 0.00 0.00 35.23 1.40
4800 4842 6.789262 GCCGATAGCGTACCTTATCTTTATA 58.211 40.000 0.00 0.00 35.23 0.98
4801 4843 6.911511 GCCGATAGCGTACCTTATCTTTATAG 59.088 42.308 0.00 0.00 35.23 1.31
4802 4844 7.201679 GCCGATAGCGTACCTTATCTTTATAGA 60.202 40.741 0.00 0.00 35.23 1.98
4803 4845 8.671921 CCGATAGCGTACCTTATCTTTATAGAA 58.328 37.037 0.00 0.00 32.51 2.10
4804 4846 9.705471 CGATAGCGTACCTTATCTTTATAGAAG 57.295 37.037 0.00 0.00 33.20 2.85
4808 4850 9.352191 AGCGTACCTTATCTTTATAGAAGAAGA 57.648 33.333 8.75 0.00 36.43 2.87
4809 4851 9.615295 GCGTACCTTATCTTTATAGAAGAAGAG 57.385 37.037 8.75 0.00 35.54 2.85
4810 4852 9.615295 CGTACCTTATCTTTATAGAAGAAGAGC 57.385 37.037 8.75 0.00 35.54 4.09
4813 4855 9.825109 ACCTTATCTTTATAGAAGAAGAGCAAC 57.175 33.333 8.75 0.00 35.54 4.17
4814 4856 9.823647 CCTTATCTTTATAGAAGAAGAGCAACA 57.176 33.333 8.75 0.00 35.54 3.33
4818 4860 9.732130 ATCTTTATAGAAGAAGAGCAACAAGTT 57.268 29.630 0.00 0.00 35.54 2.66
4819 4861 9.561069 TCTTTATAGAAGAAGAGCAACAAGTTT 57.439 29.630 0.00 0.00 0.00 2.66
4822 4864 9.772973 TTATAGAAGAAGAGCAACAAGTTTACA 57.227 29.630 0.00 0.00 0.00 2.41
4823 4865 8.677148 ATAGAAGAAGAGCAACAAGTTTACAA 57.323 30.769 0.00 0.00 0.00 2.41
4824 4866 7.020914 AGAAGAAGAGCAACAAGTTTACAAG 57.979 36.000 0.00 0.00 0.00 3.16
4825 4867 6.823689 AGAAGAAGAGCAACAAGTTTACAAGA 59.176 34.615 0.00 0.00 0.00 3.02
4826 4868 6.610741 AGAAGAGCAACAAGTTTACAAGAG 57.389 37.500 0.00 0.00 0.00 2.85
4827 4869 6.349300 AGAAGAGCAACAAGTTTACAAGAGA 58.651 36.000 0.00 0.00 0.00 3.10
4828 4870 5.993106 AGAGCAACAAGTTTACAAGAGAC 57.007 39.130 0.00 0.00 0.00 3.36
4829 4871 4.508124 AGAGCAACAAGTTTACAAGAGACG 59.492 41.667 0.00 0.00 0.00 4.18
4830 4872 4.189231 AGCAACAAGTTTACAAGAGACGT 58.811 39.130 0.00 0.00 0.00 4.34
4831 4873 4.270325 AGCAACAAGTTTACAAGAGACGTC 59.730 41.667 7.70 7.70 0.00 4.34
4832 4874 4.270325 GCAACAAGTTTACAAGAGACGTCT 59.730 41.667 20.18 20.18 32.81 4.18
4833 4875 5.461078 GCAACAAGTTTACAAGAGACGTCTA 59.539 40.000 20.09 0.00 30.45 2.59
4834 4876 6.345882 GCAACAAGTTTACAAGAGACGTCTAG 60.346 42.308 20.09 13.91 30.45 2.43
4835 4877 6.630444 ACAAGTTTACAAGAGACGTCTAGA 57.370 37.500 20.09 0.00 30.45 2.43
4836 4878 6.670233 ACAAGTTTACAAGAGACGTCTAGAG 58.330 40.000 20.09 13.17 30.45 2.43
4837 4879 6.485984 ACAAGTTTACAAGAGACGTCTAGAGA 59.514 38.462 20.09 0.00 30.45 3.10
4838 4880 7.013083 ACAAGTTTACAAGAGACGTCTAGAGAA 59.987 37.037 20.09 6.68 30.45 2.87
4839 4881 7.136289 AGTTTACAAGAGACGTCTAGAGAAG 57.864 40.000 20.09 8.10 30.45 2.85
4840 4882 6.149807 AGTTTACAAGAGACGTCTAGAGAAGG 59.850 42.308 20.09 6.67 30.45 3.46
4841 4883 4.289238 ACAAGAGACGTCTAGAGAAGGA 57.711 45.455 20.09 0.00 30.45 3.36
4842 4884 4.850680 ACAAGAGACGTCTAGAGAAGGAT 58.149 43.478 20.09 0.00 30.45 3.24
4843 4885 4.638421 ACAAGAGACGTCTAGAGAAGGATG 59.362 45.833 20.09 9.26 30.45 3.51
4844 4886 3.211045 AGAGACGTCTAGAGAAGGATGC 58.789 50.000 20.09 0.84 0.00 3.91
4845 4887 1.944024 AGACGTCTAGAGAAGGATGCG 59.056 52.381 18.46 0.00 0.00 4.73
4846 4888 1.941294 GACGTCTAGAGAAGGATGCGA 59.059 52.381 8.70 0.00 0.00 5.10
4847 4889 2.355132 GACGTCTAGAGAAGGATGCGAA 59.645 50.000 8.70 0.00 0.00 4.70
4848 4890 2.097791 ACGTCTAGAGAAGGATGCGAAC 59.902 50.000 0.00 0.00 0.00 3.95
4849 4891 2.097629 CGTCTAGAGAAGGATGCGAACA 59.902 50.000 0.00 0.00 0.00 3.18
4850 4892 3.243234 CGTCTAGAGAAGGATGCGAACAT 60.243 47.826 0.00 0.00 39.98 2.71
4860 4902 2.315925 ATGCGAACATCACACCTAGG 57.684 50.000 7.41 7.41 0.00 3.02
4861 4903 0.249120 TGCGAACATCACACCTAGGG 59.751 55.000 14.81 4.64 0.00 3.53
4862 4904 1.090052 GCGAACATCACACCTAGGGC 61.090 60.000 14.81 0.00 0.00 5.19
4863 4905 0.462047 CGAACATCACACCTAGGGCC 60.462 60.000 14.81 0.00 0.00 5.80
4864 4906 0.462047 GAACATCACACCTAGGGCCG 60.462 60.000 14.81 3.50 0.00 6.13
4865 4907 2.203070 CATCACACCTAGGGCCGC 60.203 66.667 14.81 0.00 0.00 6.53
4866 4908 2.687200 ATCACACCTAGGGCCGCA 60.687 61.111 14.81 0.00 0.00 5.69
4867 4909 3.031417 ATCACACCTAGGGCCGCAC 62.031 63.158 14.81 0.00 0.00 5.34
4868 4910 4.778143 CACACCTAGGGCCGCACC 62.778 72.222 14.81 0.00 37.93 5.01
4877 4919 3.199891 GGCCGCACCCGATTACAC 61.200 66.667 0.00 0.00 36.29 2.90
4878 4920 3.199891 GCCGCACCCGATTACACC 61.200 66.667 0.00 0.00 36.29 4.16
4879 4921 2.512974 CCGCACCCGATTACACCC 60.513 66.667 0.00 0.00 36.29 4.61
4880 4922 2.512974 CGCACCCGATTACACCCC 60.513 66.667 0.00 0.00 36.29 4.95
4881 4923 2.672295 GCACCCGATTACACCCCA 59.328 61.111 0.00 0.00 0.00 4.96
4882 4924 1.747745 GCACCCGATTACACCCCAC 60.748 63.158 0.00 0.00 0.00 4.61
4883 4925 1.988015 CACCCGATTACACCCCACT 59.012 57.895 0.00 0.00 0.00 4.00
4884 4926 0.107848 CACCCGATTACACCCCACTC 60.108 60.000 0.00 0.00 0.00 3.51
4885 4927 0.545787 ACCCGATTACACCCCACTCA 60.546 55.000 0.00 0.00 0.00 3.41
4886 4928 0.616371 CCCGATTACACCCCACTCAA 59.384 55.000 0.00 0.00 0.00 3.02
4887 4929 1.003812 CCCGATTACACCCCACTCAAA 59.996 52.381 0.00 0.00 0.00 2.69
4888 4930 2.553466 CCCGATTACACCCCACTCAAAA 60.553 50.000 0.00 0.00 0.00 2.44
4889 4931 3.150767 CCGATTACACCCCACTCAAAAA 58.849 45.455 0.00 0.00 0.00 1.94
4890 4932 3.057806 CCGATTACACCCCACTCAAAAAC 60.058 47.826 0.00 0.00 0.00 2.43
4891 4933 3.057806 CGATTACACCCCACTCAAAAACC 60.058 47.826 0.00 0.00 0.00 3.27
4892 4934 3.383698 TTACACCCCACTCAAAAACCA 57.616 42.857 0.00 0.00 0.00 3.67
4893 4935 2.239681 ACACCCCACTCAAAAACCAA 57.760 45.000 0.00 0.00 0.00 3.67
4894 4936 2.541466 ACACCCCACTCAAAAACCAAA 58.459 42.857 0.00 0.00 0.00 3.28
4895 4937 2.499693 ACACCCCACTCAAAAACCAAAG 59.500 45.455 0.00 0.00 0.00 2.77
4896 4938 1.484653 ACCCCACTCAAAAACCAAAGC 59.515 47.619 0.00 0.00 0.00 3.51
4897 4939 1.202639 CCCCACTCAAAAACCAAAGCC 60.203 52.381 0.00 0.00 0.00 4.35
4898 4940 1.762370 CCCACTCAAAAACCAAAGCCT 59.238 47.619 0.00 0.00 0.00 4.58
4899 4941 2.962421 CCCACTCAAAAACCAAAGCCTA 59.038 45.455 0.00 0.00 0.00 3.93
4900 4942 3.243737 CCCACTCAAAAACCAAAGCCTAC 60.244 47.826 0.00 0.00 0.00 3.18
4901 4943 3.636764 CCACTCAAAAACCAAAGCCTACT 59.363 43.478 0.00 0.00 0.00 2.57
4902 4944 4.261614 CCACTCAAAAACCAAAGCCTACTC 60.262 45.833 0.00 0.00 0.00 2.59
4903 4945 4.580580 CACTCAAAAACCAAAGCCTACTCT 59.419 41.667 0.00 0.00 0.00 3.24
4904 4946 4.822350 ACTCAAAAACCAAAGCCTACTCTC 59.178 41.667 0.00 0.00 0.00 3.20
4905 4947 5.048846 TCAAAAACCAAAGCCTACTCTCT 57.951 39.130 0.00 0.00 0.00 3.10
4906 4948 6.182507 TCAAAAACCAAAGCCTACTCTCTA 57.817 37.500 0.00 0.00 0.00 2.43
4907 4949 6.597562 TCAAAAACCAAAGCCTACTCTCTAA 58.402 36.000 0.00 0.00 0.00 2.10
4908 4950 6.485648 TCAAAAACCAAAGCCTACTCTCTAAC 59.514 38.462 0.00 0.00 0.00 2.34
4909 4951 5.562298 AAACCAAAGCCTACTCTCTAACA 57.438 39.130 0.00 0.00 0.00 2.41
4910 4952 5.562298 AACCAAAGCCTACTCTCTAACAA 57.438 39.130 0.00 0.00 0.00 2.83
4911 4953 5.562298 ACCAAAGCCTACTCTCTAACAAA 57.438 39.130 0.00 0.00 0.00 2.83
4912 4954 6.128138 ACCAAAGCCTACTCTCTAACAAAT 57.872 37.500 0.00 0.00 0.00 2.32
4913 4955 6.174049 ACCAAAGCCTACTCTCTAACAAATC 58.826 40.000 0.00 0.00 0.00 2.17
4914 4956 5.292101 CCAAAGCCTACTCTCTAACAAATCG 59.708 44.000 0.00 0.00 0.00 3.34
4915 4957 5.662674 AAGCCTACTCTCTAACAAATCGT 57.337 39.130 0.00 0.00 0.00 3.73
4916 4958 5.000012 AGCCTACTCTCTAACAAATCGTG 58.000 43.478 0.00 0.00 0.00 4.35
4917 4959 4.705507 AGCCTACTCTCTAACAAATCGTGA 59.294 41.667 0.00 0.00 0.00 4.35
4918 4960 4.799428 GCCTACTCTCTAACAAATCGTGAC 59.201 45.833 0.00 0.00 0.00 3.67
4919 4961 5.621555 GCCTACTCTCTAACAAATCGTGACA 60.622 44.000 0.00 0.00 0.00 3.58
4920 4962 6.387465 CCTACTCTCTAACAAATCGTGACAA 58.613 40.000 0.00 0.00 0.00 3.18
4921 4963 6.308282 CCTACTCTCTAACAAATCGTGACAAC 59.692 42.308 0.00 0.00 0.00 3.32
4922 4964 4.989168 ACTCTCTAACAAATCGTGACAACC 59.011 41.667 0.00 0.00 0.00 3.77
4923 4965 5.209818 TCTCTAACAAATCGTGACAACCT 57.790 39.130 0.00 0.00 0.00 3.50
4924 4966 4.988540 TCTCTAACAAATCGTGACAACCTG 59.011 41.667 0.00 0.00 0.00 4.00
4925 4967 2.774439 AACAAATCGTGACAACCTGC 57.226 45.000 0.00 0.00 0.00 4.85
4926 4968 0.951558 ACAAATCGTGACAACCTGCC 59.048 50.000 0.00 0.00 0.00 4.85
4927 4969 1.238439 CAAATCGTGACAACCTGCCT 58.762 50.000 0.00 0.00 0.00 4.75
4928 4970 2.224426 ACAAATCGTGACAACCTGCCTA 60.224 45.455 0.00 0.00 0.00 3.93
4929 4971 2.094762 AATCGTGACAACCTGCCTAC 57.905 50.000 0.00 0.00 0.00 3.18
4930 4972 1.267121 ATCGTGACAACCTGCCTACT 58.733 50.000 0.00 0.00 0.00 2.57
4931 4973 0.601558 TCGTGACAACCTGCCTACTC 59.398 55.000 0.00 0.00 0.00 2.59
4932 4974 0.389948 CGTGACAACCTGCCTACTCC 60.390 60.000 0.00 0.00 0.00 3.85
4933 4975 0.977395 GTGACAACCTGCCTACTCCT 59.023 55.000 0.00 0.00 0.00 3.69
4934 4976 2.176889 GTGACAACCTGCCTACTCCTA 58.823 52.381 0.00 0.00 0.00 2.94
4935 4977 2.166664 GTGACAACCTGCCTACTCCTAG 59.833 54.545 0.00 0.00 0.00 3.02
4936 4978 2.042569 TGACAACCTGCCTACTCCTAGA 59.957 50.000 0.00 0.00 0.00 2.43
4937 4979 2.427812 GACAACCTGCCTACTCCTAGAC 59.572 54.545 0.00 0.00 0.00 2.59
4938 4980 1.757699 CAACCTGCCTACTCCTAGACC 59.242 57.143 0.00 0.00 0.00 3.85
4939 4981 0.262285 ACCTGCCTACTCCTAGACCC 59.738 60.000 0.00 0.00 0.00 4.46
4940 4982 0.824182 CCTGCCTACTCCTAGACCCG 60.824 65.000 0.00 0.00 0.00 5.28
4941 4983 1.455217 TGCCTACTCCTAGACCCGC 60.455 63.158 0.00 0.00 0.00 6.13
4942 4984 2.201708 GCCTACTCCTAGACCCGCC 61.202 68.421 0.00 0.00 0.00 6.13
4943 4985 1.537669 CCTACTCCTAGACCCGCCT 59.462 63.158 0.00 0.00 0.00 5.52
4944 4986 0.537828 CCTACTCCTAGACCCGCCTC 60.538 65.000 0.00 0.00 0.00 4.70
4945 4987 0.537828 CTACTCCTAGACCCGCCTCC 60.538 65.000 0.00 0.00 0.00 4.30
4946 4988 2.004408 TACTCCTAGACCCGCCTCCC 62.004 65.000 0.00 0.00 0.00 4.30
4947 4989 3.028098 TCCTAGACCCGCCTCCCT 61.028 66.667 0.00 0.00 0.00 4.20
4948 4990 2.522193 CCTAGACCCGCCTCCCTC 60.522 72.222 0.00 0.00 0.00 4.30
4949 4991 2.522193 CTAGACCCGCCTCCCTCC 60.522 72.222 0.00 0.00 0.00 4.30
4950 4992 3.352748 TAGACCCGCCTCCCTCCA 61.353 66.667 0.00 0.00 0.00 3.86
4951 4993 3.674050 TAGACCCGCCTCCCTCCAC 62.674 68.421 0.00 0.00 0.00 4.02
4954 4996 4.787280 CCCGCCTCCCTCCACTCT 62.787 72.222 0.00 0.00 0.00 3.24
4955 4997 2.685380 CCGCCTCCCTCCACTCTT 60.685 66.667 0.00 0.00 0.00 2.85
4956 4998 2.581354 CGCCTCCCTCCACTCTTG 59.419 66.667 0.00 0.00 0.00 3.02
4957 4999 2.993853 GCCTCCCTCCACTCTTGG 59.006 66.667 0.00 0.00 45.56 3.61
4969 5011 1.761784 CACTCTTGGATCTCCCTCAGG 59.238 57.143 0.00 0.00 35.38 3.86
4970 5012 1.648568 ACTCTTGGATCTCCCTCAGGA 59.351 52.381 0.00 0.00 41.08 3.86
4971 5013 2.249743 ACTCTTGGATCTCCCTCAGGAT 59.750 50.000 0.00 0.00 42.93 3.24
4972 5014 2.899256 CTCTTGGATCTCCCTCAGGATC 59.101 54.545 0.00 0.00 42.93 3.36
4973 5015 1.617850 CTTGGATCTCCCTCAGGATCG 59.382 57.143 0.00 0.00 42.93 3.69
4974 5016 0.829602 TGGATCTCCCTCAGGATCGC 60.830 60.000 0.00 0.00 42.93 4.58
4975 5017 0.829602 GGATCTCCCTCAGGATCGCA 60.830 60.000 0.00 0.00 42.93 5.10
4976 5018 0.316841 GATCTCCCTCAGGATCGCAC 59.683 60.000 0.00 0.00 42.93 5.34
4977 5019 1.118356 ATCTCCCTCAGGATCGCACC 61.118 60.000 0.00 0.00 42.93 5.01
4978 5020 2.764128 TCCCTCAGGATCGCACCC 60.764 66.667 0.00 0.00 37.19 4.61
4979 5021 3.083349 CCCTCAGGATCGCACCCA 61.083 66.667 0.00 0.00 33.47 4.51
4980 5022 2.187946 CCTCAGGATCGCACCCAC 59.812 66.667 0.00 0.00 0.00 4.61
4981 5023 2.187946 CTCAGGATCGCACCCACC 59.812 66.667 0.00 0.00 0.00 4.61
4982 5024 2.606213 TCAGGATCGCACCCACCA 60.606 61.111 0.00 0.00 0.00 4.17
4983 5025 2.436646 CAGGATCGCACCCACCAC 60.437 66.667 0.00 0.00 0.00 4.16
4984 5026 3.717294 AGGATCGCACCCACCACC 61.717 66.667 0.00 0.00 0.00 4.61
4985 5027 3.717294 GGATCGCACCCACCACCT 61.717 66.667 0.00 0.00 0.00 4.00
4986 5028 2.436646 GATCGCACCCACCACCTG 60.437 66.667 0.00 0.00 0.00 4.00
4987 5029 3.976701 GATCGCACCCACCACCTGG 62.977 68.421 0.00 0.00 40.26 4.45
4989 5031 4.033776 CGCACCCACCACCTGGAT 62.034 66.667 0.00 0.00 43.95 3.41
4990 5032 2.665089 CGCACCCACCACCTGGATA 61.665 63.158 0.00 0.00 43.95 2.59
4991 5033 1.224592 GCACCCACCACCTGGATAG 59.775 63.158 0.00 0.00 43.95 2.08
5005 5047 5.329035 CCTGGATAGGTGATTTTTGTTGG 57.671 43.478 0.00 0.00 39.39 3.77
5006 5048 4.160252 CCTGGATAGGTGATTTTTGTTGGG 59.840 45.833 0.00 0.00 39.39 4.12
5007 5049 3.513515 TGGATAGGTGATTTTTGTTGGGC 59.486 43.478 0.00 0.00 0.00 5.36
5008 5050 3.118775 GGATAGGTGATTTTTGTTGGGCC 60.119 47.826 0.00 0.00 0.00 5.80
5009 5051 0.678950 AGGTGATTTTTGTTGGGCCG 59.321 50.000 0.00 0.00 0.00 6.13
5010 5052 0.391228 GGTGATTTTTGTTGGGCCGT 59.609 50.000 0.00 0.00 0.00 5.68
5011 5053 1.202592 GGTGATTTTTGTTGGGCCGTT 60.203 47.619 0.00 0.00 0.00 4.44
5012 5054 2.131972 GTGATTTTTGTTGGGCCGTTC 58.868 47.619 0.00 0.00 0.00 3.95
5013 5055 2.035632 TGATTTTTGTTGGGCCGTTCT 58.964 42.857 0.00 0.00 0.00 3.01
5014 5056 3.004944 GTGATTTTTGTTGGGCCGTTCTA 59.995 43.478 0.00 0.00 0.00 2.10
5015 5057 3.829601 TGATTTTTGTTGGGCCGTTCTAT 59.170 39.130 0.00 0.00 0.00 1.98
5016 5058 4.282195 TGATTTTTGTTGGGCCGTTCTATT 59.718 37.500 0.00 0.00 0.00 1.73
5017 5059 3.651803 TTTTGTTGGGCCGTTCTATTG 57.348 42.857 0.00 0.00 0.00 1.90
5018 5060 2.570415 TTGTTGGGCCGTTCTATTGA 57.430 45.000 0.00 0.00 0.00 2.57
5019 5061 2.570415 TGTTGGGCCGTTCTATTGAA 57.430 45.000 0.00 0.00 0.00 2.69
5020 5062 2.432444 TGTTGGGCCGTTCTATTGAAG 58.568 47.619 0.00 0.00 32.15 3.02
5021 5063 2.039216 TGTTGGGCCGTTCTATTGAAGA 59.961 45.455 0.00 0.00 32.15 2.87
5022 5064 2.396590 TGGGCCGTTCTATTGAAGAC 57.603 50.000 0.00 0.00 32.51 3.01
5023 5065 1.065709 TGGGCCGTTCTATTGAAGACC 60.066 52.381 0.00 0.00 32.51 3.85
5024 5066 1.664873 GGCCGTTCTATTGAAGACCC 58.335 55.000 0.00 0.00 32.51 4.46
5025 5067 1.287425 GCCGTTCTATTGAAGACCCG 58.713 55.000 0.00 0.00 32.51 5.28
5026 5068 1.287425 CCGTTCTATTGAAGACCCGC 58.713 55.000 0.00 0.00 32.51 6.13
5027 5069 0.921347 CGTTCTATTGAAGACCCGCG 59.079 55.000 0.00 0.00 32.51 6.46
5028 5070 0.651031 GTTCTATTGAAGACCCGCGC 59.349 55.000 0.00 0.00 32.51 6.86
5029 5071 0.248012 TTCTATTGAAGACCCGCGCA 59.752 50.000 8.75 0.00 32.51 6.09
5030 5072 0.464036 TCTATTGAAGACCCGCGCAT 59.536 50.000 8.75 0.00 0.00 4.73
5031 5073 1.134521 TCTATTGAAGACCCGCGCATT 60.135 47.619 8.75 0.00 0.00 3.56
5032 5074 2.101750 TCTATTGAAGACCCGCGCATTA 59.898 45.455 8.75 0.00 0.00 1.90
5033 5075 1.014352 ATTGAAGACCCGCGCATTAC 58.986 50.000 8.75 0.00 0.00 1.89
5035 5077 1.808390 GAAGACCCGCGCATTACGT 60.808 57.895 8.75 0.00 46.11 3.57
5036 5078 1.356527 GAAGACCCGCGCATTACGTT 61.357 55.000 8.75 0.00 46.11 3.99
5037 5079 1.632046 AAGACCCGCGCATTACGTTG 61.632 55.000 8.75 0.00 46.11 4.10
5038 5080 3.711997 GACCCGCGCATTACGTTGC 62.712 63.158 8.75 2.02 46.11 4.17
5039 5081 3.496131 CCCGCGCATTACGTTGCT 61.496 61.111 8.75 0.00 46.11 3.91
5040 5082 2.478746 CCGCGCATTACGTTGCTT 59.521 55.556 8.75 0.00 46.11 3.91
5041 5083 1.580132 CCGCGCATTACGTTGCTTC 60.580 57.895 8.75 1.85 46.11 3.86
5042 5084 1.580132 CGCGCATTACGTTGCTTCC 60.580 57.895 8.75 0.00 46.11 3.46
5043 5085 1.499949 GCGCATTACGTTGCTTCCA 59.500 52.632 0.30 0.00 46.11 3.53
5044 5086 0.793104 GCGCATTACGTTGCTTCCAC 60.793 55.000 0.30 0.00 46.11 4.02
5045 5087 0.515127 CGCATTACGTTGCTTCCACA 59.485 50.000 10.30 0.00 40.54 4.17
5046 5088 1.069568 CGCATTACGTTGCTTCCACAA 60.070 47.619 10.30 0.00 40.54 3.33
5047 5089 2.603412 CGCATTACGTTGCTTCCACAAA 60.603 45.455 10.30 0.00 40.54 2.83
5048 5090 2.979813 GCATTACGTTGCTTCCACAAAG 59.020 45.455 4.97 0.00 39.57 2.77
5055 5097 4.929807 CTTCCACAAAGCCCAGGT 57.070 55.556 0.00 0.00 0.00 4.00
5056 5098 2.344535 CTTCCACAAAGCCCAGGTG 58.655 57.895 0.00 0.00 0.00 4.00
5057 5099 0.178992 CTTCCACAAAGCCCAGGTGA 60.179 55.000 0.00 0.00 34.52 4.02
5058 5100 0.467290 TTCCACAAAGCCCAGGTGAC 60.467 55.000 0.00 0.00 34.52 3.67
5059 5101 1.903404 CCACAAAGCCCAGGTGACC 60.903 63.158 0.00 0.00 34.52 4.02
5060 5102 2.113139 ACAAAGCCCAGGTGACCG 59.887 61.111 0.00 0.00 0.00 4.79
5061 5103 3.365265 CAAAGCCCAGGTGACCGC 61.365 66.667 0.00 0.00 0.00 5.68
5062 5104 3.884774 AAAGCCCAGGTGACCGCA 61.885 61.111 0.00 0.00 0.00 5.69
5063 5105 3.850098 AAAGCCCAGGTGACCGCAG 62.850 63.158 0.00 0.00 0.00 5.18
5074 5116 3.825812 GACCGCAGTCACAAAAGTG 57.174 52.632 0.00 0.00 42.99 3.16
5075 5117 1.014352 GACCGCAGTCACAAAAGTGT 58.986 50.000 0.00 0.00 42.99 3.55
5076 5118 1.003866 GACCGCAGTCACAAAAGTGTC 60.004 52.381 0.00 0.00 42.99 3.67
5077 5119 0.042188 CCGCAGTCACAAAAGTGTCG 60.042 55.000 0.00 0.00 35.07 4.35
5078 5120 0.927537 CGCAGTCACAAAAGTGTCGA 59.072 50.000 0.00 0.00 35.07 4.20
5079 5121 1.326245 CGCAGTCACAAAAGTGTCGAA 59.674 47.619 0.00 0.00 35.07 3.71
5080 5122 2.705154 GCAGTCACAAAAGTGTCGAAC 58.295 47.619 0.00 0.00 35.07 3.95
5081 5123 2.538939 GCAGTCACAAAAGTGTCGAACC 60.539 50.000 0.00 0.00 35.07 3.62
5082 5124 2.031683 CAGTCACAAAAGTGTCGAACCC 59.968 50.000 0.00 0.00 35.07 4.11
5083 5125 1.004292 GTCACAAAAGTGTCGAACCCG 60.004 52.381 0.00 0.00 35.07 5.28
5084 5126 0.316689 CACAAAAGTGTCGAACCCGC 60.317 55.000 0.00 0.00 35.07 6.13
5085 5127 1.083015 CAAAAGTGTCGAACCCGCG 60.083 57.895 0.00 0.00 35.37 6.46
5086 5128 1.522130 AAAAGTGTCGAACCCGCGT 60.522 52.632 4.92 0.00 35.37 6.01
5087 5129 1.091197 AAAAGTGTCGAACCCGCGTT 61.091 50.000 4.92 0.00 35.37 4.84
5088 5130 1.091197 AAAGTGTCGAACCCGCGTTT 61.091 50.000 4.92 0.00 35.37 3.60
5089 5131 1.768112 AAGTGTCGAACCCGCGTTTG 61.768 55.000 4.92 0.00 35.02 2.93
5090 5132 2.202905 TGTCGAACCCGCGTTTGT 60.203 55.556 4.92 0.00 35.22 2.83
5091 5133 2.247267 GTCGAACCCGCGTTTGTG 59.753 61.111 4.92 0.00 35.22 3.33
5092 5134 3.641986 TCGAACCCGCGTTTGTGC 61.642 61.111 4.92 0.00 35.22 4.57
5093 5135 3.645975 CGAACCCGCGTTTGTGCT 61.646 61.111 4.92 0.00 30.30 4.40
5094 5136 2.251371 GAACCCGCGTTTGTGCTC 59.749 61.111 4.92 0.00 30.30 4.26
5095 5137 2.203153 AACCCGCGTTTGTGCTCT 60.203 55.556 4.92 0.00 0.00 4.09
5096 5138 1.782028 GAACCCGCGTTTGTGCTCTT 61.782 55.000 4.92 0.00 30.30 2.85
5097 5139 1.381165 AACCCGCGTTTGTGCTCTTT 61.381 50.000 4.92 0.00 0.00 2.52
5098 5140 1.082104 CCCGCGTTTGTGCTCTTTC 60.082 57.895 4.92 0.00 0.00 2.62
5099 5141 1.082104 CCGCGTTTGTGCTCTTTCC 60.082 57.895 4.92 0.00 0.00 3.13
5100 5142 1.438710 CGCGTTTGTGCTCTTTCCG 60.439 57.895 0.00 0.00 0.00 4.30
5101 5143 1.082104 GCGTTTGTGCTCTTTCCGG 60.082 57.895 0.00 0.00 0.00 5.14
5102 5144 1.503818 GCGTTTGTGCTCTTTCCGGA 61.504 55.000 0.00 0.00 0.00 5.14
5103 5145 0.941542 CGTTTGTGCTCTTTCCGGAA 59.058 50.000 14.35 14.35 0.00 4.30
5104 5146 1.332375 CGTTTGTGCTCTTTCCGGAAA 59.668 47.619 27.33 27.33 0.00 3.13
5105 5147 2.727777 GTTTGTGCTCTTTCCGGAAAC 58.272 47.619 25.67 16.57 0.00 2.78
5106 5148 1.314730 TTGTGCTCTTTCCGGAAACC 58.685 50.000 25.67 16.23 0.00 3.27
5107 5149 0.536460 TGTGCTCTTTCCGGAAACCC 60.536 55.000 25.67 15.90 0.00 4.11
5108 5150 1.074248 TGCTCTTTCCGGAAACCCC 59.926 57.895 25.67 15.57 0.00 4.95
5109 5151 1.379146 GCTCTTTCCGGAAACCCCT 59.621 57.895 25.67 0.00 0.00 4.79
5110 5152 0.677098 GCTCTTTCCGGAAACCCCTC 60.677 60.000 25.67 9.40 0.00 4.30
5111 5153 0.035343 CTCTTTCCGGAAACCCCTCC 60.035 60.000 25.67 0.00 0.00 4.30
5112 5154 0.475048 TCTTTCCGGAAACCCCTCCT 60.475 55.000 25.67 0.00 32.82 3.69
5113 5155 1.203338 TCTTTCCGGAAACCCCTCCTA 60.203 52.381 25.67 2.17 32.82 2.94
5114 5156 1.209747 CTTTCCGGAAACCCCTCCTAG 59.790 57.143 25.67 8.90 32.82 3.02
5115 5157 1.269703 TTCCGGAAACCCCTCCTAGC 61.270 60.000 16.28 0.00 32.82 3.42
5116 5158 2.743179 CCGGAAACCCCTCCTAGCC 61.743 68.421 0.00 0.00 32.82 3.93
5117 5159 1.689582 CGGAAACCCCTCCTAGCCT 60.690 63.158 0.00 0.00 32.82 4.58
5118 5160 1.915983 GGAAACCCCTCCTAGCCTG 59.084 63.158 0.00 0.00 32.21 4.85
5119 5161 1.224870 GAAACCCCTCCTAGCCTGC 59.775 63.158 0.00 0.00 0.00 4.85
5120 5162 1.541368 AAACCCCTCCTAGCCTGCA 60.541 57.895 0.00 0.00 0.00 4.41
5121 5163 1.140134 AAACCCCTCCTAGCCTGCAA 61.140 55.000 0.00 0.00 0.00 4.08
5122 5164 1.853250 AACCCCTCCTAGCCTGCAAC 61.853 60.000 0.00 0.00 0.00 4.17
5123 5165 2.592308 CCCTCCTAGCCTGCAACC 59.408 66.667 0.00 0.00 0.00 3.77
5124 5166 2.300967 CCCTCCTAGCCTGCAACCA 61.301 63.158 0.00 0.00 0.00 3.67
5125 5167 1.078143 CCTCCTAGCCTGCAACCAC 60.078 63.158 0.00 0.00 0.00 4.16
5126 5168 1.078143 CTCCTAGCCTGCAACCACC 60.078 63.158 0.00 0.00 0.00 4.61
5127 5169 1.841302 CTCCTAGCCTGCAACCACCA 61.841 60.000 0.00 0.00 0.00 4.17
5128 5170 1.074775 CCTAGCCTGCAACCACCAA 59.925 57.895 0.00 0.00 0.00 3.67
5129 5171 0.323725 CCTAGCCTGCAACCACCAAT 60.324 55.000 0.00 0.00 0.00 3.16
5130 5172 1.098050 CTAGCCTGCAACCACCAATC 58.902 55.000 0.00 0.00 0.00 2.67
5131 5173 0.698238 TAGCCTGCAACCACCAATCT 59.302 50.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
829 830 9.678941 AAGTCGTTCTTTCCATTTTTATTCTTC 57.321 29.630 0.00 0.00 31.57 2.87
898 899 4.023707 GTGAATGTTATGGTCTGCTATGCC 60.024 45.833 0.00 0.00 0.00 4.40
899 900 4.818546 AGTGAATGTTATGGTCTGCTATGC 59.181 41.667 0.00 0.00 0.00 3.14
900 901 7.170489 CAGTAGTGAATGTTATGGTCTGCTATG 59.830 40.741 0.00 0.00 0.00 2.23
901 902 7.147655 ACAGTAGTGAATGTTATGGTCTGCTAT 60.148 37.037 4.09 0.00 0.00 2.97
902 903 6.154534 ACAGTAGTGAATGTTATGGTCTGCTA 59.845 38.462 4.09 0.00 0.00 3.49
903 904 5.046304 ACAGTAGTGAATGTTATGGTCTGCT 60.046 40.000 4.09 0.00 0.00 4.24
904 905 5.178797 ACAGTAGTGAATGTTATGGTCTGC 58.821 41.667 4.09 0.00 0.00 4.26
905 906 6.634805 AGACAGTAGTGAATGTTATGGTCTG 58.365 40.000 4.09 0.00 31.32 3.51
906 907 6.859112 AGACAGTAGTGAATGTTATGGTCT 57.141 37.500 4.09 0.00 0.00 3.85
907 908 7.773149 AGTAGACAGTAGTGAATGTTATGGTC 58.227 38.462 4.09 0.00 0.00 4.02
908 909 7.616150 AGAGTAGACAGTAGTGAATGTTATGGT 59.384 37.037 4.09 0.00 0.00 3.55
909 910 8.001881 AGAGTAGACAGTAGTGAATGTTATGG 57.998 38.462 4.09 0.00 0.00 2.74
910 911 9.862371 AAAGAGTAGACAGTAGTGAATGTTATG 57.138 33.333 4.09 0.00 0.00 1.90
911 912 9.862371 CAAAGAGTAGACAGTAGTGAATGTTAT 57.138 33.333 4.09 0.00 0.00 1.89
912 913 8.304596 CCAAAGAGTAGACAGTAGTGAATGTTA 58.695 37.037 4.09 0.00 0.00 2.41
913 914 7.155328 CCAAAGAGTAGACAGTAGTGAATGTT 58.845 38.462 4.09 0.00 0.00 2.71
914 915 6.295349 CCCAAAGAGTAGACAGTAGTGAATGT 60.295 42.308 4.09 0.00 0.00 2.71
915 916 6.102663 CCCAAAGAGTAGACAGTAGTGAATG 58.897 44.000 4.09 0.00 0.00 2.67
998 999 1.815003 GCTTCCACAAGGACTCCATTG 59.185 52.381 0.00 2.27 45.73 2.82
1825 1826 2.664402 AACACAAAGTCTGCCTGGAT 57.336 45.000 0.00 0.00 0.00 3.41
1834 1835 8.275632 GCATTAAAAGGATCAAAACACAAAGTC 58.724 33.333 0.00 0.00 0.00 3.01
1863 1864 5.056480 AGCACGAAATCATATTTGGATCGA 58.944 37.500 10.96 0.00 0.00 3.59
2123 2127 7.972277 TCACACTGAAAATATTCGTAGTCCTAC 59.028 37.037 0.00 0.00 38.46 3.18
2221 2225 2.435805 ACTGATCAAGGAGTGTGTGTGT 59.564 45.455 0.00 0.00 0.00 3.72
2222 2226 3.117491 ACTGATCAAGGAGTGTGTGTG 57.883 47.619 0.00 0.00 0.00 3.82
2223 2227 3.389329 AGAACTGATCAAGGAGTGTGTGT 59.611 43.478 0.00 0.00 0.00 3.72
2224 2228 3.744942 CAGAACTGATCAAGGAGTGTGTG 59.255 47.826 0.00 0.00 0.00 3.82
2225 2229 3.389329 ACAGAACTGATCAAGGAGTGTGT 59.611 43.478 8.87 0.00 0.00 3.72
2226 2230 3.993081 GACAGAACTGATCAAGGAGTGTG 59.007 47.826 8.87 0.00 0.00 3.82
2227 2231 3.305676 CGACAGAACTGATCAAGGAGTGT 60.306 47.826 8.87 0.00 0.00 3.55
2410 2414 1.187567 GGGCACATGGCTGGTTTTCT 61.188 55.000 5.33 0.00 44.01 2.52
2765 2772 9.352191 GGTCGTATATATATCATGTAACCCTCT 57.648 37.037 0.00 0.00 0.00 3.69
2790 2797 1.001764 TGGCAGCAGAATCCACTGG 60.002 57.895 0.00 0.00 38.22 4.00
2897 2925 4.071423 TCAATTTCCTTCTGTTGCGATCA 58.929 39.130 0.00 0.00 0.00 2.92
3373 3405 4.627035 TCAGACATAGTTTTGCTGATCACG 59.373 41.667 0.00 0.00 31.24 4.35
3597 3629 5.870978 GCCTGCAGATTTCACAATAACAAAT 59.129 36.000 17.39 0.00 0.00 2.32
4334 4366 6.968250 AGCAAGAGAGAACAGAAAATTTCAG 58.032 36.000 8.55 2.41 0.00 3.02
4346 4378 2.670414 CACCATTCGAGCAAGAGAGAAC 59.330 50.000 0.00 0.00 0.00 3.01
4415 4447 8.726068 CCAAACACCAATTTAAATCAAATACCC 58.274 33.333 0.10 0.00 35.74 3.69
4632 4666 8.873215 AGTATTCTGTGATTAACGGATTACAG 57.127 34.615 13.77 11.69 45.39 2.74
4640 4674 7.579093 CGCATGTAAAGTATTCTGTGATTAACG 59.421 37.037 0.00 0.00 0.00 3.18
4652 4693 4.849383 GCAACGTTTCGCATGTAAAGTATT 59.151 37.500 0.00 0.00 0.00 1.89
4762 4804 4.149922 CGCTATCGGCATATTCTCGAAAAA 59.850 41.667 0.00 0.00 41.91 1.94
4763 4805 3.673338 CGCTATCGGCATATTCTCGAAAA 59.327 43.478 0.00 0.00 41.91 2.29
4764 4806 3.242518 CGCTATCGGCATATTCTCGAAA 58.757 45.455 0.00 0.00 41.91 3.46
4765 4807 2.228103 ACGCTATCGGCATATTCTCGAA 59.772 45.455 0.00 0.00 41.91 3.71
4766 4808 1.810755 ACGCTATCGGCATATTCTCGA 59.189 47.619 0.00 0.00 41.91 4.04
4767 4809 2.264109 ACGCTATCGGCATATTCTCG 57.736 50.000 0.00 0.00 41.91 4.04
4768 4810 3.128938 AGGTACGCTATCGGCATATTCTC 59.871 47.826 0.00 0.00 41.91 2.87
4769 4811 3.090037 AGGTACGCTATCGGCATATTCT 58.910 45.455 0.00 0.00 41.91 2.40
4770 4812 3.505464 AGGTACGCTATCGGCATATTC 57.495 47.619 0.00 0.00 41.91 1.75
4771 4813 3.955650 AAGGTACGCTATCGGCATATT 57.044 42.857 0.00 0.00 41.91 1.28
4772 4814 4.888239 AGATAAGGTACGCTATCGGCATAT 59.112 41.667 7.02 0.00 41.91 1.78
4773 4815 4.267536 AGATAAGGTACGCTATCGGCATA 58.732 43.478 7.02 0.00 41.91 3.14
4774 4816 3.090037 AGATAAGGTACGCTATCGGCAT 58.910 45.455 7.02 0.00 41.91 4.40
4775 4817 2.511659 AGATAAGGTACGCTATCGGCA 58.488 47.619 7.02 0.00 41.91 5.69
4776 4818 3.572604 AAGATAAGGTACGCTATCGGC 57.427 47.619 7.02 0.00 40.69 5.54
4777 4819 8.206325 TCTATAAAGATAAGGTACGCTATCGG 57.794 38.462 7.02 0.00 40.69 4.18
4778 4820 9.705471 CTTCTATAAAGATAAGGTACGCTATCG 57.295 37.037 7.02 0.00 42.43 2.92
4782 4824 9.352191 TCTTCTTCTATAAAGATAAGGTACGCT 57.648 33.333 0.00 0.00 31.02 5.07
4783 4825 9.615295 CTCTTCTTCTATAAAGATAAGGTACGC 57.385 37.037 0.00 0.00 31.45 4.42
4784 4826 9.615295 GCTCTTCTTCTATAAAGATAAGGTACG 57.385 37.037 0.00 0.00 31.45 3.67
4787 4829 9.825109 GTTGCTCTTCTTCTATAAAGATAAGGT 57.175 33.333 0.00 0.00 31.45 3.50
4788 4830 9.823647 TGTTGCTCTTCTTCTATAAAGATAAGG 57.176 33.333 0.00 0.00 31.45 2.69
4792 4834 9.732130 AACTTGTTGCTCTTCTTCTATAAAGAT 57.268 29.630 0.00 0.00 31.45 2.40
4793 4835 9.561069 AAACTTGTTGCTCTTCTTCTATAAAGA 57.439 29.630 0.00 0.00 0.00 2.52
4796 4838 9.772973 TGTAAACTTGTTGCTCTTCTTCTATAA 57.227 29.630 0.00 0.00 0.00 0.98
4797 4839 9.772973 TTGTAAACTTGTTGCTCTTCTTCTATA 57.227 29.630 0.00 0.00 0.00 1.31
4798 4840 8.677148 TTGTAAACTTGTTGCTCTTCTTCTAT 57.323 30.769 0.00 0.00 0.00 1.98
4799 4841 7.985184 TCTTGTAAACTTGTTGCTCTTCTTCTA 59.015 33.333 0.00 0.00 0.00 2.10
4800 4842 6.823689 TCTTGTAAACTTGTTGCTCTTCTTCT 59.176 34.615 0.00 0.00 0.00 2.85
4801 4843 7.011482 TCTCTTGTAAACTTGTTGCTCTTCTTC 59.989 37.037 0.00 0.00 0.00 2.87
4802 4844 6.823689 TCTCTTGTAAACTTGTTGCTCTTCTT 59.176 34.615 0.00 0.00 0.00 2.52
4803 4845 6.258947 GTCTCTTGTAAACTTGTTGCTCTTCT 59.741 38.462 0.00 0.00 0.00 2.85
4804 4846 6.423042 GTCTCTTGTAAACTTGTTGCTCTTC 58.577 40.000 0.00 0.00 0.00 2.87
4805 4847 5.006746 CGTCTCTTGTAAACTTGTTGCTCTT 59.993 40.000 0.00 0.00 0.00 2.85
4806 4848 4.508124 CGTCTCTTGTAAACTTGTTGCTCT 59.492 41.667 0.00 0.00 0.00 4.09
4807 4849 4.270325 ACGTCTCTTGTAAACTTGTTGCTC 59.730 41.667 0.00 0.00 0.00 4.26
4808 4850 4.189231 ACGTCTCTTGTAAACTTGTTGCT 58.811 39.130 0.00 0.00 0.00 3.91
4809 4851 4.270325 AGACGTCTCTTGTAAACTTGTTGC 59.730 41.667 13.58 0.00 0.00 4.17
4810 4852 5.968387 AGACGTCTCTTGTAAACTTGTTG 57.032 39.130 13.58 0.00 0.00 3.33
4811 4853 7.013083 TCTCTAGACGTCTCTTGTAAACTTGTT 59.987 37.037 23.89 0.00 0.00 2.83
4812 4854 6.485984 TCTCTAGACGTCTCTTGTAAACTTGT 59.514 38.462 23.89 0.00 0.00 3.16
4813 4855 6.900189 TCTCTAGACGTCTCTTGTAAACTTG 58.100 40.000 23.89 0.00 0.00 3.16
4814 4856 7.308710 CCTTCTCTAGACGTCTCTTGTAAACTT 60.309 40.741 23.89 0.00 0.00 2.66
4815 4857 6.149807 CCTTCTCTAGACGTCTCTTGTAAACT 59.850 42.308 23.89 0.00 0.00 2.66
4816 4858 6.149142 TCCTTCTCTAGACGTCTCTTGTAAAC 59.851 42.308 23.89 0.00 0.00 2.01
4817 4859 6.236409 TCCTTCTCTAGACGTCTCTTGTAAA 58.764 40.000 23.89 9.28 0.00 2.01
4818 4860 5.802465 TCCTTCTCTAGACGTCTCTTGTAA 58.198 41.667 23.89 10.32 0.00 2.41
4819 4861 5.417754 TCCTTCTCTAGACGTCTCTTGTA 57.582 43.478 23.89 2.58 0.00 2.41
4820 4862 4.289238 TCCTTCTCTAGACGTCTCTTGT 57.711 45.455 23.89 0.00 0.00 3.16
4821 4863 4.497340 GCATCCTTCTCTAGACGTCTCTTG 60.497 50.000 23.89 13.62 0.00 3.02
4822 4864 3.630312 GCATCCTTCTCTAGACGTCTCTT 59.370 47.826 23.89 0.16 0.00 2.85
4823 4865 3.211045 GCATCCTTCTCTAGACGTCTCT 58.789 50.000 23.89 1.04 0.00 3.10
4824 4866 2.032377 CGCATCCTTCTCTAGACGTCTC 60.032 54.545 23.89 1.61 0.00 3.36
4825 4867 1.944024 CGCATCCTTCTCTAGACGTCT 59.056 52.381 23.66 23.66 0.00 4.18
4826 4868 1.941294 TCGCATCCTTCTCTAGACGTC 59.059 52.381 7.70 7.70 0.00 4.34
4827 4869 2.039818 TCGCATCCTTCTCTAGACGT 57.960 50.000 0.00 0.00 0.00 4.34
4828 4870 2.097629 TGTTCGCATCCTTCTCTAGACG 59.902 50.000 0.00 0.00 0.00 4.18
4829 4871 3.784701 TGTTCGCATCCTTCTCTAGAC 57.215 47.619 0.00 0.00 0.00 2.59
4830 4872 4.576216 GATGTTCGCATCCTTCTCTAGA 57.424 45.455 0.00 0.00 46.22 2.43
4841 4883 1.134401 CCCTAGGTGTGATGTTCGCAT 60.134 52.381 8.29 0.00 39.28 4.73
4842 4884 0.249120 CCCTAGGTGTGATGTTCGCA 59.751 55.000 8.29 0.00 34.04 5.10
4843 4885 1.090052 GCCCTAGGTGTGATGTTCGC 61.090 60.000 8.29 0.00 0.00 4.70
4844 4886 0.462047 GGCCCTAGGTGTGATGTTCG 60.462 60.000 8.29 0.00 0.00 3.95
4845 4887 0.462047 CGGCCCTAGGTGTGATGTTC 60.462 60.000 8.29 0.00 0.00 3.18
4846 4888 1.602237 CGGCCCTAGGTGTGATGTT 59.398 57.895 8.29 0.00 0.00 2.71
4847 4889 3.031417 GCGGCCCTAGGTGTGATGT 62.031 63.158 8.29 0.00 0.00 3.06
4848 4890 2.203070 GCGGCCCTAGGTGTGATG 60.203 66.667 8.29 0.00 0.00 3.07
4849 4891 2.687200 TGCGGCCCTAGGTGTGAT 60.687 61.111 8.29 0.00 0.00 3.06
4850 4892 3.702048 GTGCGGCCCTAGGTGTGA 61.702 66.667 8.29 0.00 0.00 3.58
4851 4893 4.778143 GGTGCGGCCCTAGGTGTG 62.778 72.222 8.29 0.00 0.00 3.82
4860 4902 3.199891 GTGTAATCGGGTGCGGCC 61.200 66.667 0.00 0.00 0.00 6.13
4861 4903 3.199891 GGTGTAATCGGGTGCGGC 61.200 66.667 0.00 0.00 0.00 6.53
4862 4904 2.512974 GGGTGTAATCGGGTGCGG 60.513 66.667 0.00 0.00 0.00 5.69
4863 4905 2.512974 GGGGTGTAATCGGGTGCG 60.513 66.667 0.00 0.00 0.00 5.34
4864 4906 1.747745 GTGGGGTGTAATCGGGTGC 60.748 63.158 0.00 0.00 0.00 5.01
4865 4907 0.107848 GAGTGGGGTGTAATCGGGTG 60.108 60.000 0.00 0.00 0.00 4.61
4866 4908 0.545787 TGAGTGGGGTGTAATCGGGT 60.546 55.000 0.00 0.00 0.00 5.28
4867 4909 0.616371 TTGAGTGGGGTGTAATCGGG 59.384 55.000 0.00 0.00 0.00 5.14
4868 4910 2.483014 TTTGAGTGGGGTGTAATCGG 57.517 50.000 0.00 0.00 0.00 4.18
4869 4911 3.057806 GGTTTTTGAGTGGGGTGTAATCG 60.058 47.826 0.00 0.00 0.00 3.34
4870 4912 3.892588 TGGTTTTTGAGTGGGGTGTAATC 59.107 43.478 0.00 0.00 0.00 1.75
4871 4913 3.917300 TGGTTTTTGAGTGGGGTGTAAT 58.083 40.909 0.00 0.00 0.00 1.89
4872 4914 3.383698 TGGTTTTTGAGTGGGGTGTAA 57.616 42.857 0.00 0.00 0.00 2.41
4873 4915 3.383698 TTGGTTTTTGAGTGGGGTGTA 57.616 42.857 0.00 0.00 0.00 2.90
4874 4916 2.239681 TTGGTTTTTGAGTGGGGTGT 57.760 45.000 0.00 0.00 0.00 4.16
4875 4917 2.741553 GCTTTGGTTTTTGAGTGGGGTG 60.742 50.000 0.00 0.00 0.00 4.61
4876 4918 1.484653 GCTTTGGTTTTTGAGTGGGGT 59.515 47.619 0.00 0.00 0.00 4.95
4877 4919 1.202639 GGCTTTGGTTTTTGAGTGGGG 60.203 52.381 0.00 0.00 0.00 4.96
4878 4920 1.762370 AGGCTTTGGTTTTTGAGTGGG 59.238 47.619 0.00 0.00 0.00 4.61
4879 4921 3.636764 AGTAGGCTTTGGTTTTTGAGTGG 59.363 43.478 0.00 0.00 0.00 4.00
4880 4922 4.580580 AGAGTAGGCTTTGGTTTTTGAGTG 59.419 41.667 0.00 0.00 0.00 3.51
4881 4923 4.793201 AGAGTAGGCTTTGGTTTTTGAGT 58.207 39.130 0.00 0.00 0.00 3.41
4882 4924 5.066593 AGAGAGTAGGCTTTGGTTTTTGAG 58.933 41.667 0.00 0.00 0.00 3.02
4883 4925 5.048846 AGAGAGTAGGCTTTGGTTTTTGA 57.951 39.130 0.00 0.00 0.00 2.69
4884 4926 6.262273 TGTTAGAGAGTAGGCTTTGGTTTTTG 59.738 38.462 0.00 0.00 0.00 2.44
4885 4927 6.362248 TGTTAGAGAGTAGGCTTTGGTTTTT 58.638 36.000 0.00 0.00 0.00 1.94
4886 4928 5.937111 TGTTAGAGAGTAGGCTTTGGTTTT 58.063 37.500 0.00 0.00 0.00 2.43
4887 4929 5.562298 TGTTAGAGAGTAGGCTTTGGTTT 57.438 39.130 0.00 0.00 0.00 3.27
4888 4930 5.562298 TTGTTAGAGAGTAGGCTTTGGTT 57.438 39.130 0.00 0.00 0.00 3.67
4889 4931 5.562298 TTTGTTAGAGAGTAGGCTTTGGT 57.438 39.130 0.00 0.00 0.00 3.67
4890 4932 5.292101 CGATTTGTTAGAGAGTAGGCTTTGG 59.708 44.000 0.00 0.00 0.00 3.28
4891 4933 5.869888 ACGATTTGTTAGAGAGTAGGCTTTG 59.130 40.000 0.00 0.00 0.00 2.77
4892 4934 5.869888 CACGATTTGTTAGAGAGTAGGCTTT 59.130 40.000 0.00 0.00 0.00 3.51
4893 4935 5.185249 TCACGATTTGTTAGAGAGTAGGCTT 59.815 40.000 0.00 0.00 0.00 4.35
4894 4936 4.705507 TCACGATTTGTTAGAGAGTAGGCT 59.294 41.667 0.00 0.00 0.00 4.58
4895 4937 4.799428 GTCACGATTTGTTAGAGAGTAGGC 59.201 45.833 0.00 0.00 0.00 3.93
4896 4938 5.950883 TGTCACGATTTGTTAGAGAGTAGG 58.049 41.667 0.00 0.00 0.00 3.18
4897 4939 6.308282 GGTTGTCACGATTTGTTAGAGAGTAG 59.692 42.308 0.00 0.00 0.00 2.57
4898 4940 6.015688 AGGTTGTCACGATTTGTTAGAGAGTA 60.016 38.462 0.00 0.00 0.00 2.59
4899 4941 4.989168 GGTTGTCACGATTTGTTAGAGAGT 59.011 41.667 0.00 0.00 0.00 3.24
4900 4942 5.119279 CAGGTTGTCACGATTTGTTAGAGAG 59.881 44.000 0.00 0.00 0.00 3.20
4901 4943 4.988540 CAGGTTGTCACGATTTGTTAGAGA 59.011 41.667 0.00 0.00 0.00 3.10
4902 4944 4.377431 GCAGGTTGTCACGATTTGTTAGAG 60.377 45.833 0.00 0.00 0.00 2.43
4903 4945 3.496884 GCAGGTTGTCACGATTTGTTAGA 59.503 43.478 0.00 0.00 0.00 2.10
4904 4946 3.364964 GGCAGGTTGTCACGATTTGTTAG 60.365 47.826 0.00 0.00 0.00 2.34
4905 4947 2.550606 GGCAGGTTGTCACGATTTGTTA 59.449 45.455 0.00 0.00 0.00 2.41
4906 4948 1.336755 GGCAGGTTGTCACGATTTGTT 59.663 47.619 0.00 0.00 0.00 2.83
4907 4949 0.951558 GGCAGGTTGTCACGATTTGT 59.048 50.000 0.00 0.00 0.00 2.83
4908 4950 1.238439 AGGCAGGTTGTCACGATTTG 58.762 50.000 0.00 0.00 0.00 2.32
4909 4951 2.038557 AGTAGGCAGGTTGTCACGATTT 59.961 45.455 0.00 0.00 0.00 2.17
4910 4952 1.623811 AGTAGGCAGGTTGTCACGATT 59.376 47.619 0.00 0.00 0.00 3.34
4911 4953 1.204941 GAGTAGGCAGGTTGTCACGAT 59.795 52.381 0.00 0.00 0.00 3.73
4912 4954 0.601558 GAGTAGGCAGGTTGTCACGA 59.398 55.000 0.00 0.00 0.00 4.35
4913 4955 0.389948 GGAGTAGGCAGGTTGTCACG 60.390 60.000 0.00 0.00 0.00 4.35
4914 4956 0.977395 AGGAGTAGGCAGGTTGTCAC 59.023 55.000 0.00 0.00 0.00 3.67
4915 4957 2.042569 TCTAGGAGTAGGCAGGTTGTCA 59.957 50.000 0.00 0.00 0.00 3.58
4916 4958 2.427812 GTCTAGGAGTAGGCAGGTTGTC 59.572 54.545 0.00 0.00 30.49 3.18
4917 4959 2.458620 GTCTAGGAGTAGGCAGGTTGT 58.541 52.381 0.00 0.00 30.49 3.32
4918 4960 1.757699 GGTCTAGGAGTAGGCAGGTTG 59.242 57.143 0.00 0.00 31.86 3.77
4919 4961 1.343176 GGGTCTAGGAGTAGGCAGGTT 60.343 57.143 0.00 0.00 31.86 3.50
4920 4962 0.262285 GGGTCTAGGAGTAGGCAGGT 59.738 60.000 0.00 0.00 31.86 4.00
4921 4963 0.824182 CGGGTCTAGGAGTAGGCAGG 60.824 65.000 0.00 0.00 31.86 4.85
4922 4964 1.457009 GCGGGTCTAGGAGTAGGCAG 61.457 65.000 0.00 0.00 31.86 4.85
4923 4965 1.455217 GCGGGTCTAGGAGTAGGCA 60.455 63.158 0.00 0.00 31.86 4.75
4924 4966 2.201708 GGCGGGTCTAGGAGTAGGC 61.202 68.421 0.00 0.00 0.00 3.93
4925 4967 0.537828 GAGGCGGGTCTAGGAGTAGG 60.538 65.000 0.00 0.00 0.00 3.18
4926 4968 0.537828 GGAGGCGGGTCTAGGAGTAG 60.538 65.000 0.00 0.00 0.00 2.57
4927 4969 1.535685 GGAGGCGGGTCTAGGAGTA 59.464 63.158 0.00 0.00 0.00 2.59
4928 4970 2.279408 GGAGGCGGGTCTAGGAGT 59.721 66.667 0.00 0.00 0.00 3.85
4929 4971 2.522193 GGGAGGCGGGTCTAGGAG 60.522 72.222 0.00 0.00 0.00 3.69
4930 4972 3.028098 AGGGAGGCGGGTCTAGGA 61.028 66.667 0.00 0.00 0.00 2.94
4931 4973 2.522193 GAGGGAGGCGGGTCTAGG 60.522 72.222 0.00 0.00 0.00 3.02
4932 4974 2.522193 GGAGGGAGGCGGGTCTAG 60.522 72.222 0.00 0.00 0.00 2.43
4933 4975 3.352748 TGGAGGGAGGCGGGTCTA 61.353 66.667 0.00 0.00 0.00 2.59
4937 4979 4.787280 AGAGTGGAGGGAGGCGGG 62.787 72.222 0.00 0.00 0.00 6.13
4938 4980 2.685380 AAGAGTGGAGGGAGGCGG 60.685 66.667 0.00 0.00 0.00 6.13
4939 4981 2.581354 CAAGAGTGGAGGGAGGCG 59.419 66.667 0.00 0.00 0.00 5.52
4947 4989 5.808100 CCTGAGGGAGATCCAAGAGTGGA 62.808 56.522 0.47 0.00 46.56 4.02
4948 4990 3.546627 CCTGAGGGAGATCCAAGAGTGG 61.547 59.091 0.47 0.00 39.76 4.00
4949 4991 1.761784 CCTGAGGGAGATCCAAGAGTG 59.238 57.143 0.47 0.00 38.24 3.51
4950 4992 1.648568 TCCTGAGGGAGATCCAAGAGT 59.351 52.381 0.00 0.00 36.57 3.24
4951 4993 2.468301 TCCTGAGGGAGATCCAAGAG 57.532 55.000 0.00 0.00 36.57 2.85
4952 4994 2.754526 CGATCCTGAGGGAGATCCAAGA 60.755 54.545 0.00 0.00 45.86 3.02
4953 4995 1.617850 CGATCCTGAGGGAGATCCAAG 59.382 57.143 0.00 0.00 45.86 3.61
4954 4996 1.709578 CGATCCTGAGGGAGATCCAA 58.290 55.000 0.00 0.00 45.86 3.53
4955 4997 0.829602 GCGATCCTGAGGGAGATCCA 60.830 60.000 0.00 0.00 45.86 3.41
4956 4998 0.829602 TGCGATCCTGAGGGAGATCC 60.830 60.000 0.00 0.00 45.86 3.36
4957 4999 0.316841 GTGCGATCCTGAGGGAGATC 59.683 60.000 0.00 0.00 45.86 2.75
4958 5000 1.118356 GGTGCGATCCTGAGGGAGAT 61.118 60.000 0.00 0.00 45.86 2.75
4959 5001 1.758514 GGTGCGATCCTGAGGGAGA 60.759 63.158 0.00 0.00 45.86 3.71
4960 5002 2.801631 GGGTGCGATCCTGAGGGAG 61.802 68.421 0.00 0.00 45.86 4.30
4961 5003 2.764128 GGGTGCGATCCTGAGGGA 60.764 66.667 0.00 0.00 46.81 4.20
4962 5004 3.083349 TGGGTGCGATCCTGAGGG 61.083 66.667 0.00 0.00 0.00 4.30
4963 5005 2.187946 GTGGGTGCGATCCTGAGG 59.812 66.667 0.00 0.00 0.00 3.86
4964 5006 2.187946 GGTGGGTGCGATCCTGAG 59.812 66.667 0.00 0.00 0.00 3.35
4965 5007 2.606213 TGGTGGGTGCGATCCTGA 60.606 61.111 0.00 0.00 0.00 3.86
4966 5008 2.436646 GTGGTGGGTGCGATCCTG 60.437 66.667 0.00 0.00 0.00 3.86
4967 5009 3.717294 GGTGGTGGGTGCGATCCT 61.717 66.667 0.00 0.00 0.00 3.24
4968 5010 3.717294 AGGTGGTGGGTGCGATCC 61.717 66.667 0.00 0.00 0.00 3.36
4969 5011 2.436646 CAGGTGGTGGGTGCGATC 60.437 66.667 0.00 0.00 0.00 3.69
4970 5012 4.033776 CCAGGTGGTGGGTGCGAT 62.034 66.667 0.00 0.00 43.63 4.58
4984 5026 4.381932 GCCCAACAAAAATCACCTATCCAG 60.382 45.833 0.00 0.00 0.00 3.86
4985 5027 3.513515 GCCCAACAAAAATCACCTATCCA 59.486 43.478 0.00 0.00 0.00 3.41
4986 5028 3.118775 GGCCCAACAAAAATCACCTATCC 60.119 47.826 0.00 0.00 0.00 2.59
4987 5029 3.428862 CGGCCCAACAAAAATCACCTATC 60.429 47.826 0.00 0.00 0.00 2.08
4988 5030 2.495669 CGGCCCAACAAAAATCACCTAT 59.504 45.455 0.00 0.00 0.00 2.57
4989 5031 1.889829 CGGCCCAACAAAAATCACCTA 59.110 47.619 0.00 0.00 0.00 3.08
4990 5032 0.678950 CGGCCCAACAAAAATCACCT 59.321 50.000 0.00 0.00 0.00 4.00
4991 5033 0.391228 ACGGCCCAACAAAAATCACC 59.609 50.000 0.00 0.00 0.00 4.02
4992 5034 2.131972 GAACGGCCCAACAAAAATCAC 58.868 47.619 0.00 0.00 0.00 3.06
4993 5035 2.035632 AGAACGGCCCAACAAAAATCA 58.964 42.857 0.00 0.00 0.00 2.57
4994 5036 2.812358 AGAACGGCCCAACAAAAATC 57.188 45.000 0.00 0.00 0.00 2.17
4995 5037 4.282195 TCAATAGAACGGCCCAACAAAAAT 59.718 37.500 0.00 0.00 0.00 1.82
4996 5038 3.637229 TCAATAGAACGGCCCAACAAAAA 59.363 39.130 0.00 0.00 0.00 1.94
4997 5039 3.223435 TCAATAGAACGGCCCAACAAAA 58.777 40.909 0.00 0.00 0.00 2.44
4998 5040 2.865079 TCAATAGAACGGCCCAACAAA 58.135 42.857 0.00 0.00 0.00 2.83
4999 5041 2.570415 TCAATAGAACGGCCCAACAA 57.430 45.000 0.00 0.00 0.00 2.83
5000 5042 2.039216 TCTTCAATAGAACGGCCCAACA 59.961 45.455 0.00 0.00 0.00 3.33
5001 5043 2.418976 GTCTTCAATAGAACGGCCCAAC 59.581 50.000 0.00 0.00 33.81 3.77
5002 5044 2.617021 GGTCTTCAATAGAACGGCCCAA 60.617 50.000 0.00 0.00 33.81 4.12
5003 5045 1.065709 GGTCTTCAATAGAACGGCCCA 60.066 52.381 0.00 0.00 33.81 5.36
5004 5046 1.664873 GGTCTTCAATAGAACGGCCC 58.335 55.000 0.00 0.00 33.81 5.80
5005 5047 1.664873 GGGTCTTCAATAGAACGGCC 58.335 55.000 0.00 0.00 41.83 6.13
5006 5048 1.287425 CGGGTCTTCAATAGAACGGC 58.713 55.000 0.00 0.00 41.83 5.68
5007 5049 1.287425 GCGGGTCTTCAATAGAACGG 58.713 55.000 0.00 0.00 41.83 4.44
5008 5050 0.921347 CGCGGGTCTTCAATAGAACG 59.079 55.000 0.00 0.00 41.83 3.95
5009 5051 0.651031 GCGCGGGTCTTCAATAGAAC 59.349 55.000 8.83 0.00 40.06 3.01
5010 5052 0.248012 TGCGCGGGTCTTCAATAGAA 59.752 50.000 8.83 0.00 33.81 2.10
5011 5053 0.464036 ATGCGCGGGTCTTCAATAGA 59.536 50.000 8.83 0.00 0.00 1.98
5012 5054 1.299541 AATGCGCGGGTCTTCAATAG 58.700 50.000 8.83 0.00 0.00 1.73
5013 5055 2.206750 GTAATGCGCGGGTCTTCAATA 58.793 47.619 8.83 0.00 0.00 1.90
5014 5056 1.014352 GTAATGCGCGGGTCTTCAAT 58.986 50.000 8.83 0.00 0.00 2.57
5015 5057 1.355796 CGTAATGCGCGGGTCTTCAA 61.356 55.000 8.83 0.00 0.00 2.69
5016 5058 1.807981 CGTAATGCGCGGGTCTTCA 60.808 57.895 8.83 0.00 0.00 3.02
5017 5059 1.356527 AACGTAATGCGCGGGTCTTC 61.357 55.000 8.83 0.00 46.11 2.87
5018 5060 1.375013 AACGTAATGCGCGGGTCTT 60.375 52.632 8.83 0.00 46.11 3.01
5019 5061 2.098233 CAACGTAATGCGCGGGTCT 61.098 57.895 8.83 0.00 46.11 3.85
5020 5062 2.398036 CAACGTAATGCGCGGGTC 59.602 61.111 8.83 0.00 46.11 4.46
5021 5063 3.795342 GCAACGTAATGCGCGGGT 61.795 61.111 8.83 0.00 46.11 5.28
5027 5069 2.697431 TTGTGGAAGCAACGTAATGC 57.303 45.000 3.99 3.99 46.78 3.56
5038 5080 0.178992 TCACCTGGGCTTTGTGGAAG 60.179 55.000 0.00 0.00 38.45 3.46
5039 5081 0.467290 GTCACCTGGGCTTTGTGGAA 60.467 55.000 0.00 0.00 0.00 3.53
5040 5082 1.150536 GTCACCTGGGCTTTGTGGA 59.849 57.895 0.00 0.00 0.00 4.02
5041 5083 1.903404 GGTCACCTGGGCTTTGTGG 60.903 63.158 0.00 0.00 0.00 4.17
5042 5084 2.260869 CGGTCACCTGGGCTTTGTG 61.261 63.158 0.00 0.00 0.00 3.33
5043 5085 2.113139 CGGTCACCTGGGCTTTGT 59.887 61.111 0.00 0.00 0.00 2.83
5044 5086 3.365265 GCGGTCACCTGGGCTTTG 61.365 66.667 0.00 0.00 0.00 2.77
5045 5087 3.850098 CTGCGGTCACCTGGGCTTT 62.850 63.158 0.00 0.00 0.00 3.51
5046 5088 4.335647 CTGCGGTCACCTGGGCTT 62.336 66.667 0.00 0.00 0.00 4.35
5049 5091 3.625897 TGACTGCGGTCACCTGGG 61.626 66.667 24.54 0.00 46.19 4.45
5063 5105 4.734447 GCGGGTTCGACACTTTTGTGAC 62.734 54.545 3.03 0.00 45.41 3.67
5064 5106 2.666306 GCGGGTTCGACACTTTTGTGA 61.666 52.381 3.03 0.00 45.41 3.58
5065 5107 0.316689 GCGGGTTCGACACTTTTGTG 60.317 55.000 0.00 0.00 45.34 3.33
5066 5108 1.768112 CGCGGGTTCGACACTTTTGT 61.768 55.000 0.00 0.00 39.32 2.83
5067 5109 1.083015 CGCGGGTTCGACACTTTTG 60.083 57.895 0.00 0.00 39.00 2.44
5068 5110 1.091197 AACGCGGGTTCGACACTTTT 61.091 50.000 12.67 0.00 39.00 2.27
5069 5111 1.091197 AAACGCGGGTTCGACACTTT 61.091 50.000 18.88 0.00 39.00 2.66
5070 5112 1.522130 AAACGCGGGTTCGACACTT 60.522 52.632 18.88 0.00 39.00 3.16
5071 5113 2.107546 AAACGCGGGTTCGACACT 59.892 55.556 18.88 0.00 39.00 3.55
5072 5114 2.247267 CAAACGCGGGTTCGACAC 59.753 61.111 18.88 0.00 39.00 3.67
5073 5115 2.202905 ACAAACGCGGGTTCGACA 60.203 55.556 18.88 0.00 39.00 4.35
5074 5116 2.247267 CACAAACGCGGGTTCGAC 59.753 61.111 18.88 0.00 39.00 4.20
5075 5117 3.641986 GCACAAACGCGGGTTCGA 61.642 61.111 18.88 0.00 39.00 3.71
5076 5118 3.573489 GAGCACAAACGCGGGTTCG 62.573 63.158 18.88 10.30 34.62 3.95
5077 5119 1.782028 AAGAGCACAAACGCGGGTTC 61.782 55.000 18.88 6.00 34.62 3.62
5078 5120 1.381165 AAAGAGCACAAACGCGGGTT 61.381 50.000 12.67 12.67 38.22 4.11
5079 5121 1.782028 GAAAGAGCACAAACGCGGGT 61.782 55.000 12.47 0.00 36.85 5.28
5080 5122 1.082104 GAAAGAGCACAAACGCGGG 60.082 57.895 12.47 1.38 36.85 6.13
5081 5123 1.082104 GGAAAGAGCACAAACGCGG 60.082 57.895 12.47 0.00 36.85 6.46
5082 5124 1.438710 CGGAAAGAGCACAAACGCG 60.439 57.895 3.53 3.53 36.85 6.01
5083 5125 1.082104 CCGGAAAGAGCACAAACGC 60.082 57.895 0.00 0.00 0.00 4.84
5084 5126 0.941542 TTCCGGAAAGAGCACAAACG 59.058 50.000 16.28 0.00 0.00 3.60
5085 5127 2.543031 GGTTTCCGGAAAGAGCACAAAC 60.543 50.000 29.63 14.95 0.00 2.93
5086 5128 1.679153 GGTTTCCGGAAAGAGCACAAA 59.321 47.619 29.63 2.18 0.00 2.83
5087 5129 1.314730 GGTTTCCGGAAAGAGCACAA 58.685 50.000 29.63 3.01 0.00 3.33
5088 5130 0.536460 GGGTTTCCGGAAAGAGCACA 60.536 55.000 29.63 3.85 0.00 4.57
5089 5131 1.241990 GGGGTTTCCGGAAAGAGCAC 61.242 60.000 29.63 18.69 0.00 4.40
5090 5132 1.074248 GGGGTTTCCGGAAAGAGCA 59.926 57.895 29.63 5.53 0.00 4.26
5091 5133 0.677098 GAGGGGTTTCCGGAAAGAGC 60.677 60.000 29.63 18.80 41.52 4.09
5092 5134 0.035343 GGAGGGGTTTCCGGAAAGAG 60.035 60.000 29.63 0.00 41.52 2.85
5093 5135 0.475048 AGGAGGGGTTTCCGGAAAGA 60.475 55.000 29.63 7.25 42.29 2.52
5094 5136 1.209747 CTAGGAGGGGTTTCCGGAAAG 59.790 57.143 29.63 11.00 42.29 2.62
5095 5137 1.282382 CTAGGAGGGGTTTCCGGAAA 58.718 55.000 25.67 25.67 42.29 3.13
5096 5138 1.269703 GCTAGGAGGGGTTTCCGGAA 61.270 60.000 14.35 14.35 42.29 4.30
5097 5139 1.688187 GCTAGGAGGGGTTTCCGGA 60.688 63.158 0.00 0.00 42.29 5.14
5098 5140 2.743179 GGCTAGGAGGGGTTTCCGG 61.743 68.421 0.00 0.00 42.29 5.14
5099 5141 1.689582 AGGCTAGGAGGGGTTTCCG 60.690 63.158 0.00 0.00 42.29 4.30
5100 5142 1.915983 CAGGCTAGGAGGGGTTTCC 59.084 63.158 0.00 0.00 37.52 3.13
5101 5143 1.224870 GCAGGCTAGGAGGGGTTTC 59.775 63.158 0.00 0.00 0.00 2.78
5102 5144 1.140134 TTGCAGGCTAGGAGGGGTTT 61.140 55.000 0.00 0.00 0.00 3.27
5103 5145 1.541368 TTGCAGGCTAGGAGGGGTT 60.541 57.895 0.00 0.00 0.00 4.11
5104 5146 2.124996 TTGCAGGCTAGGAGGGGT 59.875 61.111 0.00 0.00 0.00 4.95
5105 5147 2.592308 GTTGCAGGCTAGGAGGGG 59.408 66.667 0.00 0.00 0.00 4.79
5106 5148 2.300967 TGGTTGCAGGCTAGGAGGG 61.301 63.158 0.00 0.00 0.00 4.30
5107 5149 1.078143 GTGGTTGCAGGCTAGGAGG 60.078 63.158 0.00 0.00 0.00 4.30
5108 5150 1.078143 GGTGGTTGCAGGCTAGGAG 60.078 63.158 0.00 0.00 0.00 3.69
5109 5151 1.422977 TTGGTGGTTGCAGGCTAGGA 61.423 55.000 0.00 0.00 0.00 2.94
5110 5152 0.323725 ATTGGTGGTTGCAGGCTAGG 60.324 55.000 0.00 0.00 0.00 3.02
5111 5153 1.098050 GATTGGTGGTTGCAGGCTAG 58.902 55.000 0.00 0.00 0.00 3.42
5112 5154 0.698238 AGATTGGTGGTTGCAGGCTA 59.302 50.000 0.00 0.00 0.00 3.93
5113 5155 1.462035 AGATTGGTGGTTGCAGGCT 59.538 52.632 0.00 0.00 0.00 4.58
5114 5156 4.102113 AGATTGGTGGTTGCAGGC 57.898 55.556 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.