Multiple sequence alignment - TraesCS7D01G278900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G278900 chr7D 100.000 3852 0 0 1 3852 269051583 269047732 0.000000e+00 7114.0
1 TraesCS7D01G278900 chr7D 90.256 390 35 2 2 388 373233858 373234247 1.230000e-139 507.0
2 TraesCS7D01G278900 chr7D 89.770 391 36 3 1 387 64203234 64203624 7.430000e-137 497.0
3 TraesCS7D01G278900 chr7D 89.770 391 37 2 1 388 368223372 368223762 7.430000e-137 497.0
4 TraesCS7D01G278900 chr7A 94.476 3512 90 29 388 3835 296591023 296587552 0.000000e+00 5315.0
5 TraesCS7D01G278900 chr7B 95.788 3039 79 18 595 3600 272718272 272721294 0.000000e+00 4857.0
6 TraesCS7D01G278900 chr7B 87.778 180 9 2 388 564 272691413 272691582 8.440000e-47 198.0
7 TraesCS7D01G278900 chr7B 100.000 33 0 0 553 585 272691896 272691928 1.160000e-05 62.1
8 TraesCS7D01G278900 chr4D 90.256 390 35 2 1 387 263938581 263938192 1.230000e-139 507.0
9 TraesCS7D01G278900 chr2D 90.000 390 36 2 1 387 448491652 448492041 5.750000e-138 501.0
10 TraesCS7D01G278900 chr1D 89.744 390 37 2 1 387 181057656 181057267 2.670000e-136 496.0
11 TraesCS7D01G278900 chr1D 89.691 388 36 3 4 387 63592139 63591752 3.460000e-135 492.0
12 TraesCS7D01G278900 chr3D 89.340 394 38 3 1 391 263063205 263063597 3.460000e-135 492.0
13 TraesCS7D01G278900 chr3D 89.487 390 38 2 1 387 126296550 126296939 1.240000e-134 490.0
14 TraesCS7D01G278900 chr5B 77.928 222 38 8 3281 3500 273070300 273070088 1.120000e-25 128.0
15 TraesCS7D01G278900 chr6B 89.873 79 8 0 3422 3500 73597396 73597318 6.810000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G278900 chr7D 269047732 269051583 3851 True 7114 7114 100.000 1 3852 1 chr7D.!!$R1 3851
1 TraesCS7D01G278900 chr7A 296587552 296591023 3471 True 5315 5315 94.476 388 3835 1 chr7A.!!$R1 3447
2 TraesCS7D01G278900 chr7B 272718272 272721294 3022 False 4857 4857 95.788 595 3600 1 chr7B.!!$F1 3005

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.032130 CGCCTGCGCTTATCTCCTTA 59.968 55.000 9.73 0.00 0.00 2.69 F
336 337 0.179045 GGCCGTTGATAGAGCCACAT 60.179 55.000 0.00 0.00 45.07 3.21 F
381 382 0.179054 GATACCCCTTCCCAGAACGC 60.179 60.000 0.00 0.00 0.00 4.84 F
515 519 0.320073 CCTTGTCGTTGCCGTCCTAA 60.320 55.000 0.00 0.00 35.01 2.69 F
1575 1595 1.129251 CTCGTTACCATGCAAGTGCTG 59.871 52.381 4.69 0.86 42.66 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1262 1282 0.317938 GTTCGAGCGACACTGACACT 60.318 55.000 0.00 0.00 0.00 3.55 R
1326 1346 0.473694 TCCTTCCCAGTGCCTCTTCA 60.474 55.000 0.00 0.00 0.00 3.02 R
1993 2017 0.940519 TTCTGCACAAAAGCGCATGC 60.941 50.000 11.47 7.91 37.54 4.06 R
2428 2463 7.118723 TGATATGAAGTTGTGGCTATTTTCCT 58.881 34.615 0.00 0.00 0.00 3.36 R
3526 3585 0.460459 GTAAGGGTCAGCTTCCTCGC 60.460 60.000 4.92 0.00 32.02 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.990288 GTCCTGACGGTCTTGGTC 57.010 61.111 9.88 6.06 34.99 4.02
23 24 2.352817 GTCCTGACGGTCTTGGTCT 58.647 57.895 9.88 0.00 35.45 3.85
24 25 0.680061 GTCCTGACGGTCTTGGTCTT 59.320 55.000 9.88 0.00 35.45 3.01
25 26 0.679505 TCCTGACGGTCTTGGTCTTG 59.320 55.000 9.88 0.00 35.45 3.02
26 27 0.393077 CCTGACGGTCTTGGTCTTGT 59.607 55.000 9.88 0.00 35.45 3.16
27 28 1.202651 CCTGACGGTCTTGGTCTTGTT 60.203 52.381 9.88 0.00 35.45 2.83
28 29 1.867233 CTGACGGTCTTGGTCTTGTTG 59.133 52.381 9.88 0.00 35.45 3.33
29 30 0.586802 GACGGTCTTGGTCTTGTTGC 59.413 55.000 0.00 0.00 0.00 4.17
30 31 0.107410 ACGGTCTTGGTCTTGTTGCA 60.107 50.000 0.00 0.00 0.00 4.08
31 32 1.238439 CGGTCTTGGTCTTGTTGCAT 58.762 50.000 0.00 0.00 0.00 3.96
32 33 1.069022 CGGTCTTGGTCTTGTTGCATG 60.069 52.381 0.00 0.00 0.00 4.06
33 34 1.270550 GGTCTTGGTCTTGTTGCATGG 59.729 52.381 0.00 0.00 0.00 3.66
34 35 1.270550 GTCTTGGTCTTGTTGCATGGG 59.729 52.381 0.00 0.00 0.00 4.00
35 36 1.144708 TCTTGGTCTTGTTGCATGGGA 59.855 47.619 0.00 0.00 0.00 4.37
36 37 1.962807 CTTGGTCTTGTTGCATGGGAA 59.037 47.619 0.00 0.00 0.00 3.97
37 38 2.307496 TGGTCTTGTTGCATGGGAAT 57.693 45.000 0.00 0.00 0.00 3.01
38 39 1.894466 TGGTCTTGTTGCATGGGAATG 59.106 47.619 0.00 0.00 0.00 2.67
39 40 1.205417 GGTCTTGTTGCATGGGAATGG 59.795 52.381 0.00 0.00 0.00 3.16
40 41 2.170166 GTCTTGTTGCATGGGAATGGA 58.830 47.619 0.00 0.00 0.00 3.41
41 42 2.562298 GTCTTGTTGCATGGGAATGGAA 59.438 45.455 0.00 0.00 0.00 3.53
42 43 3.006752 GTCTTGTTGCATGGGAATGGAAA 59.993 43.478 0.00 0.00 33.76 3.13
43 44 3.006752 TCTTGTTGCATGGGAATGGAAAC 59.993 43.478 0.00 0.00 33.76 2.78
44 45 1.622811 TGTTGCATGGGAATGGAAACC 59.377 47.619 0.00 0.00 33.76 3.27
45 46 1.901833 GTTGCATGGGAATGGAAACCT 59.098 47.619 0.00 0.00 33.76 3.50
46 47 2.302733 GTTGCATGGGAATGGAAACCTT 59.697 45.455 0.00 0.00 33.76 3.50
47 48 2.618794 TGCATGGGAATGGAAACCTTT 58.381 42.857 0.00 0.00 0.00 3.11
48 49 2.302445 TGCATGGGAATGGAAACCTTTG 59.698 45.455 0.00 0.00 0.00 2.77
49 50 2.355007 GCATGGGAATGGAAACCTTTGG 60.355 50.000 0.00 0.00 0.00 3.28
50 51 1.347062 TGGGAATGGAAACCTTTGGC 58.653 50.000 0.00 0.00 0.00 4.52
51 52 1.132881 TGGGAATGGAAACCTTTGGCT 60.133 47.619 0.00 0.00 0.00 4.75
52 53 1.276138 GGGAATGGAAACCTTTGGCTG 59.724 52.381 0.00 0.00 0.00 4.85
53 54 2.247358 GGAATGGAAACCTTTGGCTGA 58.753 47.619 0.00 0.00 0.00 4.26
54 55 2.833943 GGAATGGAAACCTTTGGCTGAT 59.166 45.455 0.00 0.00 0.00 2.90
55 56 3.261643 GGAATGGAAACCTTTGGCTGATT 59.738 43.478 0.00 0.00 0.00 2.57
56 57 4.263025 GGAATGGAAACCTTTGGCTGATTT 60.263 41.667 0.00 0.00 0.00 2.17
57 58 4.541973 ATGGAAACCTTTGGCTGATTTC 57.458 40.909 0.00 0.00 0.00 2.17
58 59 3.575805 TGGAAACCTTTGGCTGATTTCT 58.424 40.909 0.00 0.00 31.40 2.52
59 60 3.573967 TGGAAACCTTTGGCTGATTTCTC 59.426 43.478 0.00 0.00 31.40 2.87
60 61 3.366374 GGAAACCTTTGGCTGATTTCTCG 60.366 47.826 0.00 0.00 31.40 4.04
61 62 1.826385 ACCTTTGGCTGATTTCTCGG 58.174 50.000 0.00 0.00 0.00 4.63
62 63 1.098050 CCTTTGGCTGATTTCTCGGG 58.902 55.000 0.00 0.00 0.00 5.14
63 64 1.340017 CCTTTGGCTGATTTCTCGGGA 60.340 52.381 0.00 0.00 0.00 5.14
64 65 1.740025 CTTTGGCTGATTTCTCGGGAC 59.260 52.381 0.00 0.00 0.00 4.46
65 66 0.984230 TTGGCTGATTTCTCGGGACT 59.016 50.000 0.00 0.00 0.00 3.85
66 67 0.537188 TGGCTGATTTCTCGGGACTC 59.463 55.000 0.00 0.00 0.00 3.36
67 68 0.179070 GGCTGATTTCTCGGGACTCC 60.179 60.000 0.00 0.00 0.00 3.85
86 87 2.419198 CGCCTGCGCTTATCTCCT 59.581 61.111 9.73 0.00 0.00 3.69
87 88 1.227380 CGCCTGCGCTTATCTCCTT 60.227 57.895 9.73 0.00 0.00 3.36
88 89 0.032130 CGCCTGCGCTTATCTCCTTA 59.968 55.000 9.73 0.00 0.00 2.69
89 90 1.789506 GCCTGCGCTTATCTCCTTAG 58.210 55.000 9.73 0.00 0.00 2.18
90 91 1.789506 CCTGCGCTTATCTCCTTAGC 58.210 55.000 9.73 0.00 0.00 3.09
91 92 1.069204 CCTGCGCTTATCTCCTTAGCA 59.931 52.381 9.73 0.00 34.62 3.49
92 93 2.131183 CTGCGCTTATCTCCTTAGCAC 58.869 52.381 9.73 0.00 34.62 4.40
93 94 1.202533 TGCGCTTATCTCCTTAGCACC 60.203 52.381 9.73 0.00 34.62 5.01
94 95 1.202533 GCGCTTATCTCCTTAGCACCA 60.203 52.381 0.00 0.00 34.62 4.17
95 96 2.741878 GCGCTTATCTCCTTAGCACCAA 60.742 50.000 0.00 0.00 34.62 3.67
96 97 3.531538 CGCTTATCTCCTTAGCACCAAA 58.468 45.455 0.00 0.00 34.62 3.28
97 98 3.557595 CGCTTATCTCCTTAGCACCAAAG 59.442 47.826 0.00 0.00 34.62 2.77
98 99 4.680708 CGCTTATCTCCTTAGCACCAAAGA 60.681 45.833 0.00 0.00 34.62 2.52
99 100 4.813697 GCTTATCTCCTTAGCACCAAAGAG 59.186 45.833 0.00 0.00 35.05 2.85
100 101 3.922171 ATCTCCTTAGCACCAAAGAGG 57.078 47.619 0.00 0.00 45.67 3.69
101 102 2.902608 TCTCCTTAGCACCAAAGAGGA 58.097 47.619 0.00 0.00 41.22 3.71
102 103 3.248024 TCTCCTTAGCACCAAAGAGGAA 58.752 45.455 0.00 0.00 41.22 3.36
103 104 3.650942 TCTCCTTAGCACCAAAGAGGAAA 59.349 43.478 0.00 0.00 41.22 3.13
104 105 3.751518 TCCTTAGCACCAAAGAGGAAAC 58.248 45.455 0.00 0.00 41.22 2.78
105 106 3.137544 TCCTTAGCACCAAAGAGGAAACA 59.862 43.478 0.00 0.00 41.22 2.83
106 107 3.503748 CCTTAGCACCAAAGAGGAAACAG 59.496 47.826 0.00 0.00 41.22 3.16
107 108 2.736670 AGCACCAAAGAGGAAACAGT 57.263 45.000 0.00 0.00 41.22 3.55
108 109 3.018423 AGCACCAAAGAGGAAACAGTT 57.982 42.857 0.00 0.00 41.22 3.16
109 110 2.689983 AGCACCAAAGAGGAAACAGTTG 59.310 45.455 0.00 0.00 41.22 3.16
110 111 2.427095 GCACCAAAGAGGAAACAGTTGT 59.573 45.455 0.00 0.00 41.22 3.32
111 112 3.489229 GCACCAAAGAGGAAACAGTTGTC 60.489 47.826 0.00 0.00 41.22 3.18
112 113 3.066760 CACCAAAGAGGAAACAGTTGTCC 59.933 47.826 6.46 6.46 41.22 4.02
114 115 4.165372 ACCAAAGAGGAAACAGTTGTCCTA 59.835 41.667 13.83 0.00 44.57 2.94
115 116 4.515567 CCAAAGAGGAAACAGTTGTCCTAC 59.484 45.833 13.83 9.54 44.57 3.18
116 117 3.662247 AGAGGAAACAGTTGTCCTACG 57.338 47.619 13.83 0.00 44.57 3.51
117 118 2.067013 GAGGAAACAGTTGTCCTACGC 58.933 52.381 13.83 3.11 44.57 4.42
118 119 1.154197 GGAAACAGTTGTCCTACGCC 58.846 55.000 7.07 0.00 0.00 5.68
119 120 1.154197 GAAACAGTTGTCCTACGCCC 58.846 55.000 0.00 0.00 0.00 6.13
120 121 0.601841 AAACAGTTGTCCTACGCCCG 60.602 55.000 0.00 0.00 0.00 6.13
121 122 2.813908 CAGTTGTCCTACGCCCGC 60.814 66.667 0.00 0.00 0.00 6.13
122 123 2.995574 AGTTGTCCTACGCCCGCT 60.996 61.111 0.00 0.00 0.00 5.52
123 124 2.813908 GTTGTCCTACGCCCGCTG 60.814 66.667 0.00 0.00 0.00 5.18
124 125 4.077184 TTGTCCTACGCCCGCTGG 62.077 66.667 0.00 0.00 0.00 4.85
147 148 4.329545 GCCTGGCCTTGGTCGTCA 62.330 66.667 7.66 0.00 0.00 4.35
148 149 2.671070 CCTGGCCTTGGTCGTCAT 59.329 61.111 3.32 0.00 0.00 3.06
149 150 1.746615 CCTGGCCTTGGTCGTCATG 60.747 63.158 3.32 0.00 0.00 3.07
150 151 1.746615 CTGGCCTTGGTCGTCATGG 60.747 63.158 3.32 8.33 41.96 3.66
153 154 4.208632 CCTTGGTCGTCATGGCTC 57.791 61.111 0.00 0.00 34.50 4.70
154 155 1.296392 CCTTGGTCGTCATGGCTCA 59.704 57.895 0.00 0.00 34.50 4.26
155 156 1.021390 CCTTGGTCGTCATGGCTCAC 61.021 60.000 0.00 0.00 34.50 3.51
156 157 1.354337 CTTGGTCGTCATGGCTCACG 61.354 60.000 0.00 0.00 37.36 4.35
157 158 2.094757 TTGGTCGTCATGGCTCACGT 62.095 55.000 0.00 0.00 37.30 4.49
158 159 1.805945 GGTCGTCATGGCTCACGTC 60.806 63.158 0.00 0.00 37.30 4.34
159 160 1.080772 GTCGTCATGGCTCACGTCA 60.081 57.895 0.00 0.00 37.30 4.35
160 161 0.458543 GTCGTCATGGCTCACGTCAT 60.459 55.000 0.00 0.00 35.41 3.06
161 162 0.179137 TCGTCATGGCTCACGTCATC 60.179 55.000 0.00 0.00 31.91 2.92
162 163 1.148157 CGTCATGGCTCACGTCATCC 61.148 60.000 0.00 0.00 31.91 3.51
163 164 1.141665 TCATGGCTCACGTCATCCG 59.858 57.895 0.00 0.00 44.03 4.18
164 165 1.141665 CATGGCTCACGTCATCCGA 59.858 57.895 0.00 0.00 40.70 4.55
165 166 0.460109 CATGGCTCACGTCATCCGAA 60.460 55.000 0.00 0.00 40.70 4.30
166 167 0.460284 ATGGCTCACGTCATCCGAAC 60.460 55.000 0.00 0.00 40.70 3.95
167 168 1.810030 GGCTCACGTCATCCGAACC 60.810 63.158 0.00 0.00 40.70 3.62
168 169 1.215647 GCTCACGTCATCCGAACCT 59.784 57.895 0.00 0.00 40.70 3.50
169 170 0.802607 GCTCACGTCATCCGAACCTC 60.803 60.000 0.00 0.00 40.70 3.85
170 171 0.523546 CTCACGTCATCCGAACCTCG 60.524 60.000 0.00 0.00 40.70 4.63
171 172 2.158959 CACGTCATCCGAACCTCGC 61.159 63.158 0.00 0.00 38.82 5.03
172 173 2.949678 CGTCATCCGAACCTCGCG 60.950 66.667 0.00 0.00 38.82 5.87
173 174 2.488355 GTCATCCGAACCTCGCGA 59.512 61.111 9.26 9.26 38.82 5.87
174 175 1.586564 GTCATCCGAACCTCGCGAG 60.587 63.158 29.06 29.06 38.82 5.03
175 176 1.747745 TCATCCGAACCTCGCGAGA 60.748 57.895 36.59 16.86 38.82 4.04
176 177 1.101635 TCATCCGAACCTCGCGAGAT 61.102 55.000 36.59 24.36 38.82 2.75
177 178 0.936764 CATCCGAACCTCGCGAGATG 60.937 60.000 36.59 25.17 38.82 2.90
178 179 1.101635 ATCCGAACCTCGCGAGATGA 61.102 55.000 36.59 22.76 38.82 2.92
179 180 1.298713 CCGAACCTCGCGAGATGAG 60.299 63.158 36.59 21.82 38.82 2.90
180 181 1.429825 CGAACCTCGCGAGATGAGT 59.570 57.895 36.59 22.51 40.84 3.41
181 182 0.590230 CGAACCTCGCGAGATGAGTC 60.590 60.000 36.59 21.92 40.84 3.36
182 183 0.736053 GAACCTCGCGAGATGAGTCT 59.264 55.000 36.59 15.52 40.84 3.24
183 184 1.133407 GAACCTCGCGAGATGAGTCTT 59.867 52.381 36.59 12.02 40.84 3.01
184 185 0.453793 ACCTCGCGAGATGAGTCTTG 59.546 55.000 36.59 18.52 40.84 3.02
194 195 6.450845 CGAGATGAGTCTTGCATAGAAATC 57.549 41.667 0.00 0.00 33.97 2.17
195 196 6.215121 CGAGATGAGTCTTGCATAGAAATCT 58.785 40.000 13.58 13.58 34.74 2.40
196 197 6.363088 CGAGATGAGTCTTGCATAGAAATCTC 59.637 42.308 20.50 20.50 39.87 2.75
197 198 6.523840 AGATGAGTCTTGCATAGAAATCTCC 58.476 40.000 0.00 0.00 33.81 3.71
198 199 4.686972 TGAGTCTTGCATAGAAATCTCCG 58.313 43.478 0.00 0.00 33.81 4.63
199 200 3.462021 AGTCTTGCATAGAAATCTCCGC 58.538 45.455 0.00 0.00 33.81 5.54
200 201 3.133721 AGTCTTGCATAGAAATCTCCGCT 59.866 43.478 0.00 0.00 33.81 5.52
201 202 3.492756 GTCTTGCATAGAAATCTCCGCTC 59.507 47.826 0.00 0.00 33.81 5.03
202 203 2.533266 TGCATAGAAATCTCCGCTCC 57.467 50.000 5.81 0.00 0.00 4.70
203 204 2.042464 TGCATAGAAATCTCCGCTCCT 58.958 47.619 5.81 0.00 0.00 3.69
204 205 2.036475 TGCATAGAAATCTCCGCTCCTC 59.964 50.000 5.81 0.00 0.00 3.71
205 206 2.924454 GCATAGAAATCTCCGCTCCTCG 60.924 54.545 0.00 0.00 38.08 4.63
219 220 4.504916 CTCGGGAGCCAGCGTGAG 62.505 72.222 0.00 0.00 0.00 3.51
222 223 4.154347 GGGAGCCAGCGTGAGGAG 62.154 72.222 0.00 0.00 0.00 3.69
223 224 4.154347 GGAGCCAGCGTGAGGAGG 62.154 72.222 0.00 0.00 0.00 4.30
245 246 3.333219 TCCTGCAGGAGGCCTTGG 61.333 66.667 32.00 3.60 42.47 3.61
246 247 3.655211 CCTGCAGGAGGCCTTGGT 61.655 66.667 29.88 0.00 43.89 3.67
247 248 2.360852 CTGCAGGAGGCCTTGGTG 60.361 66.667 6.77 6.11 43.89 4.17
248 249 3.177884 TGCAGGAGGCCTTGGTGT 61.178 61.111 6.77 0.00 43.89 4.16
249 250 2.360475 GCAGGAGGCCTTGGTGTC 60.360 66.667 6.77 0.00 36.11 3.67
250 251 2.046892 CAGGAGGCCTTGGTGTCG 60.047 66.667 6.77 0.00 0.00 4.35
251 252 2.526873 AGGAGGCCTTGGTGTCGT 60.527 61.111 6.77 0.00 0.00 4.34
252 253 2.047179 GGAGGCCTTGGTGTCGTC 60.047 66.667 6.77 0.00 0.00 4.20
253 254 2.047179 GAGGCCTTGGTGTCGTCC 60.047 66.667 6.77 0.00 0.00 4.79
254 255 3.934391 GAGGCCTTGGTGTCGTCCG 62.934 68.421 6.77 0.00 0.00 4.79
256 257 4.681978 GCCTTGGTGTCGTCCGCT 62.682 66.667 0.00 0.00 0.00 5.52
257 258 2.432628 CCTTGGTGTCGTCCGCTC 60.433 66.667 0.00 0.00 0.00 5.03
258 259 2.805353 CTTGGTGTCGTCCGCTCG 60.805 66.667 0.00 0.00 0.00 5.03
288 289 2.492090 CCTCGCGAGGGTCTTGAG 59.508 66.667 41.47 17.83 44.87 3.02
289 290 2.344203 CCTCGCGAGGGTCTTGAGT 61.344 63.158 41.47 0.00 44.87 3.41
290 291 1.137825 CTCGCGAGGGTCTTGAGTC 59.862 63.158 28.40 0.00 0.00 3.36
291 292 2.202492 CGCGAGGGTCTTGAGTCG 60.202 66.667 0.00 0.00 35.51 4.18
292 293 2.182030 GCGAGGGTCTTGAGTCGG 59.818 66.667 0.00 0.00 32.99 4.79
293 294 2.637383 GCGAGGGTCTTGAGTCGGT 61.637 63.158 0.00 0.00 32.99 4.69
294 295 1.213013 CGAGGGTCTTGAGTCGGTG 59.787 63.158 0.00 0.00 0.00 4.94
295 296 1.241990 CGAGGGTCTTGAGTCGGTGA 61.242 60.000 0.00 0.00 0.00 4.02
296 297 1.187087 GAGGGTCTTGAGTCGGTGAT 58.813 55.000 0.00 0.00 0.00 3.06
297 298 0.898320 AGGGTCTTGAGTCGGTGATG 59.102 55.000 0.00 0.00 0.00 3.07
298 299 0.741221 GGGTCTTGAGTCGGTGATGC 60.741 60.000 0.00 0.00 0.00 3.91
299 300 0.247736 GGTCTTGAGTCGGTGATGCT 59.752 55.000 0.00 0.00 0.00 3.79
300 301 1.354040 GTCTTGAGTCGGTGATGCTG 58.646 55.000 0.00 0.00 0.00 4.41
301 302 1.067565 GTCTTGAGTCGGTGATGCTGA 60.068 52.381 0.00 0.00 0.00 4.26
302 303 1.618343 TCTTGAGTCGGTGATGCTGAA 59.382 47.619 0.00 0.00 33.65 3.02
303 304 2.234661 TCTTGAGTCGGTGATGCTGAAT 59.765 45.455 0.00 0.00 33.65 2.57
304 305 2.014335 TGAGTCGGTGATGCTGAATG 57.986 50.000 0.00 0.00 33.65 2.67
305 306 1.276138 TGAGTCGGTGATGCTGAATGT 59.724 47.619 0.00 0.00 33.65 2.71
306 307 1.662629 GAGTCGGTGATGCTGAATGTG 59.337 52.381 0.00 0.00 33.65 3.21
307 308 0.729116 GTCGGTGATGCTGAATGTGG 59.271 55.000 0.00 0.00 33.65 4.17
308 309 0.392863 TCGGTGATGCTGAATGTGGG 60.393 55.000 0.00 0.00 0.00 4.61
309 310 1.811860 GGTGATGCTGAATGTGGGC 59.188 57.895 0.00 0.00 0.00 5.36
310 311 1.669999 GGTGATGCTGAATGTGGGCC 61.670 60.000 0.00 0.00 0.00 5.80
311 312 1.750018 TGATGCTGAATGTGGGCCG 60.750 57.895 0.00 0.00 0.00 6.13
312 313 1.750399 GATGCTGAATGTGGGCCGT 60.750 57.895 0.00 0.00 0.00 5.68
313 314 0.463654 GATGCTGAATGTGGGCCGTA 60.464 55.000 0.00 0.00 0.00 4.02
314 315 0.748005 ATGCTGAATGTGGGCCGTAC 60.748 55.000 0.00 0.00 0.00 3.67
315 316 2.112815 GCTGAATGTGGGCCGTACC 61.113 63.158 0.00 0.00 37.93 3.34
316 317 1.298340 CTGAATGTGGGCCGTACCA 59.702 57.895 0.00 0.00 42.05 3.25
317 318 0.744414 CTGAATGTGGGCCGTACCAG 60.744 60.000 0.00 0.00 42.20 4.00
318 319 1.451387 GAATGTGGGCCGTACCAGG 60.451 63.158 0.00 0.00 42.20 4.45
326 327 2.582436 CCGTACCAGGCCGTTGAT 59.418 61.111 0.00 0.00 0.00 2.57
327 328 1.817881 CCGTACCAGGCCGTTGATA 59.182 57.895 0.00 0.00 0.00 2.15
328 329 0.249322 CCGTACCAGGCCGTTGATAG 60.249 60.000 0.00 0.00 0.00 2.08
329 330 0.742505 CGTACCAGGCCGTTGATAGA 59.257 55.000 0.00 0.00 0.00 1.98
330 331 1.269102 CGTACCAGGCCGTTGATAGAG 60.269 57.143 0.00 0.00 0.00 2.43
331 332 0.750850 TACCAGGCCGTTGATAGAGC 59.249 55.000 0.00 0.00 0.00 4.09
332 333 1.227674 CCAGGCCGTTGATAGAGCC 60.228 63.158 0.00 0.00 46.13 4.70
334 335 4.126524 GGCCGTTGATAGAGCCAC 57.873 61.111 0.00 0.00 45.07 5.01
335 336 1.220749 GGCCGTTGATAGAGCCACA 59.779 57.895 0.00 0.00 45.07 4.17
336 337 0.179045 GGCCGTTGATAGAGCCACAT 60.179 55.000 0.00 0.00 45.07 3.21
337 338 1.221414 GCCGTTGATAGAGCCACATC 58.779 55.000 0.00 0.00 0.00 3.06
338 339 1.491670 CCGTTGATAGAGCCACATCG 58.508 55.000 0.00 0.00 0.00 3.84
339 340 1.202417 CCGTTGATAGAGCCACATCGT 60.202 52.381 0.00 0.00 0.00 3.73
340 341 1.854743 CGTTGATAGAGCCACATCGTG 59.145 52.381 0.00 0.00 0.00 4.35
363 364 4.020617 CGGGCTGGCAAGTCTGGA 62.021 66.667 2.88 0.00 30.10 3.86
364 365 2.679716 GGGCTGGCAAGTCTGGAT 59.320 61.111 2.88 0.00 0.00 3.41
365 366 1.915228 GGGCTGGCAAGTCTGGATA 59.085 57.895 2.88 0.00 0.00 2.59
366 367 0.464554 GGGCTGGCAAGTCTGGATAC 60.465 60.000 2.88 0.00 0.00 2.24
367 368 0.464554 GGCTGGCAAGTCTGGATACC 60.465 60.000 0.00 0.00 0.00 2.73
368 369 0.464554 GCTGGCAAGTCTGGATACCC 60.465 60.000 0.00 0.00 0.00 3.69
369 370 0.181350 CTGGCAAGTCTGGATACCCC 59.819 60.000 0.00 0.00 0.00 4.95
370 371 0.253160 TGGCAAGTCTGGATACCCCT 60.253 55.000 0.00 0.00 35.38 4.79
371 372 0.919710 GGCAAGTCTGGATACCCCTT 59.080 55.000 0.00 0.00 35.38 3.95
372 373 1.134068 GGCAAGTCTGGATACCCCTTC 60.134 57.143 0.00 0.00 35.38 3.46
373 374 1.134068 GCAAGTCTGGATACCCCTTCC 60.134 57.143 0.00 0.00 35.38 3.46
374 375 1.490910 CAAGTCTGGATACCCCTTCCC 59.509 57.143 0.00 0.00 35.38 3.97
375 376 0.722676 AGTCTGGATACCCCTTCCCA 59.277 55.000 0.00 0.00 35.38 4.37
376 377 1.132500 GTCTGGATACCCCTTCCCAG 58.868 60.000 0.00 0.00 45.63 4.45
377 378 3.654876 CTGGATACCCCTTCCCAGA 57.345 57.895 0.00 0.00 46.84 3.86
378 379 1.893315 CTGGATACCCCTTCCCAGAA 58.107 55.000 0.00 0.00 46.84 3.02
379 380 1.490910 CTGGATACCCCTTCCCAGAAC 59.509 57.143 0.00 0.00 46.84 3.01
380 381 0.468648 GGATACCCCTTCCCAGAACG 59.531 60.000 0.00 0.00 0.00 3.95
381 382 0.179054 GATACCCCTTCCCAGAACGC 60.179 60.000 0.00 0.00 0.00 4.84
382 383 1.632965 ATACCCCTTCCCAGAACGCC 61.633 60.000 0.00 0.00 0.00 5.68
383 384 4.778143 CCCCTTCCCAGAACGCCG 62.778 72.222 0.00 0.00 0.00 6.46
384 385 3.702048 CCCTTCCCAGAACGCCGA 61.702 66.667 0.00 0.00 0.00 5.54
385 386 2.434359 CCTTCCCAGAACGCCGAC 60.434 66.667 0.00 0.00 0.00 4.79
386 387 2.342279 CTTCCCAGAACGCCGACA 59.658 61.111 0.00 0.00 0.00 4.35
405 406 1.264288 CACGGCTGAAGAAGTTCCAAC 59.736 52.381 0.00 0.00 0.00 3.77
431 432 7.016466 CCGTAAAATCAATTTAGCACGTACAA 58.984 34.615 0.00 0.00 34.21 2.41
448 449 7.856894 GCACGTACAACAAACTAAATTTAAGGA 59.143 33.333 0.00 0.00 0.00 3.36
478 482 6.412362 TTTTAGTGGATCTAGAGATGCTCC 57.588 41.667 11.69 0.08 42.45 4.70
514 518 1.290955 CCTTGTCGTTGCCGTCCTA 59.709 57.895 0.00 0.00 35.01 2.94
515 519 0.320073 CCTTGTCGTTGCCGTCCTAA 60.320 55.000 0.00 0.00 35.01 2.69
516 520 1.504359 CTTGTCGTTGCCGTCCTAAA 58.496 50.000 0.00 0.00 35.01 1.85
517 521 1.868498 CTTGTCGTTGCCGTCCTAAAA 59.132 47.619 0.00 0.00 35.01 1.52
518 522 1.219646 TGTCGTTGCCGTCCTAAAAC 58.780 50.000 0.00 0.00 35.01 2.43
578 583 3.243737 GGGAAGGGCAAACAAGTAACTTG 60.244 47.826 0.00 0.00 45.85 3.16
579 584 3.381045 GAAGGGCAAACAAGTAACTTGC 58.619 45.455 0.00 4.96 44.43 4.01
580 585 2.666317 AGGGCAAACAAGTAACTTGCT 58.334 42.857 8.66 0.00 44.43 3.91
581 586 3.827722 AGGGCAAACAAGTAACTTGCTA 58.172 40.909 8.66 0.00 44.43 3.49
582 587 4.211920 AGGGCAAACAAGTAACTTGCTAA 58.788 39.130 8.66 0.00 44.43 3.09
583 588 4.037565 AGGGCAAACAAGTAACTTGCTAAC 59.962 41.667 8.66 1.47 44.43 2.34
584 589 4.202070 GGGCAAACAAGTAACTTGCTAACA 60.202 41.667 8.66 0.00 44.43 2.41
585 590 5.508994 GGGCAAACAAGTAACTTGCTAACAT 60.509 40.000 8.66 0.00 44.43 2.71
586 591 5.983118 GGCAAACAAGTAACTTGCTAACATT 59.017 36.000 8.66 0.00 44.43 2.71
674 679 4.003788 ACGTTCACTGCGAGGGGG 62.004 66.667 0.00 0.00 0.00 5.40
675 680 3.691342 CGTTCACTGCGAGGGGGA 61.691 66.667 0.00 0.00 0.00 4.81
676 681 2.266055 GTTCACTGCGAGGGGGAG 59.734 66.667 0.00 0.00 40.47 4.30
686 691 3.767044 GAGGGGGAGGAGGAGGAGC 62.767 73.684 0.00 0.00 0.00 4.70
794 799 1.770518 GATCCCCCACCCCGAGATT 60.771 63.158 0.00 0.00 0.00 2.40
805 810 2.969950 ACCCCGAGATTTGATCCGATTA 59.030 45.455 0.00 0.00 0.00 1.75
808 813 5.247564 ACCCCGAGATTTGATCCGATTAATA 59.752 40.000 0.00 0.00 0.00 0.98
809 814 6.070194 ACCCCGAGATTTGATCCGATTAATAT 60.070 38.462 0.00 0.00 0.00 1.28
810 815 6.823689 CCCCGAGATTTGATCCGATTAATATT 59.176 38.462 0.00 0.00 0.00 1.28
811 816 7.336931 CCCCGAGATTTGATCCGATTAATATTT 59.663 37.037 0.00 0.00 0.00 1.40
812 817 8.730680 CCCGAGATTTGATCCGATTAATATTTT 58.269 33.333 0.00 0.00 0.00 1.82
813 818 9.546909 CCGAGATTTGATCCGATTAATATTTTG 57.453 33.333 0.00 0.00 0.00 2.44
814 819 9.546909 CGAGATTTGATCCGATTAATATTTTGG 57.453 33.333 0.00 0.00 0.00 3.28
1188 1208 1.893801 ACCTTCAACTTCCTCGTCGAT 59.106 47.619 0.00 0.00 0.00 3.59
1189 1209 3.087031 ACCTTCAACTTCCTCGTCGATA 58.913 45.455 0.00 0.00 0.00 2.92
1197 1217 3.119566 ACTTCCTCGTCGATAGTGGTTTC 60.120 47.826 0.00 0.00 37.40 2.78
1211 1231 1.206132 TGGTTTCGGTATGCTCACGAT 59.794 47.619 0.00 0.00 36.43 3.73
1262 1282 2.083002 TGCTCGTGAAAAGCATATGCA 58.917 42.857 28.62 5.48 44.51 3.96
1307 1327 1.461127 GAGTTGACTTCGGATGTGTGC 59.539 52.381 0.77 0.00 0.00 4.57
1326 1346 1.392589 CAGTGTTTCTTGTGGTGGCT 58.607 50.000 0.00 0.00 0.00 4.75
1567 1587 1.803334 TGGTGTTCTCGTTACCATGC 58.197 50.000 0.00 0.00 39.43 4.06
1575 1595 1.129251 CTCGTTACCATGCAAGTGCTG 59.871 52.381 4.69 0.86 42.66 4.41
1760 1780 2.758979 ACGAACATGTTCTATCCGGAGT 59.241 45.455 30.45 18.07 37.44 3.85
1945 1965 4.901868 ACAAGGGTGTGATATAAACGTGT 58.098 39.130 0.00 0.00 36.31 4.49
2020 2044 3.908382 CGCTTTTGTGCAGAAACTATGTC 59.092 43.478 8.78 0.00 0.00 3.06
2021 2045 4.319766 CGCTTTTGTGCAGAAACTATGTCT 60.320 41.667 8.78 0.00 0.00 3.41
2022 2046 5.523369 GCTTTTGTGCAGAAACTATGTCTT 58.477 37.500 8.78 0.00 0.00 3.01
2063 2090 8.144478 TCATTAATATTACTGTGAGCTGGAGTC 58.856 37.037 11.36 0.00 0.00 3.36
2198 2225 3.454812 AGATATACCGTTTCCTGGCAAGT 59.545 43.478 0.00 0.00 0.00 3.16
2428 2463 4.617530 GCAAGAGATCAAGCAATGCAAAGA 60.618 41.667 8.35 2.10 32.80 2.52
2625 2662 4.283467 TCGCAGGTATGGATATAACAAGCT 59.717 41.667 0.00 0.00 31.52 3.74
3134 3173 3.688673 CCTTGTTTTGCTCAGATCCTCTC 59.311 47.826 0.00 0.00 0.00 3.20
3200 3239 6.293955 CGGTGGTGTATTTGGGATTTCATATC 60.294 42.308 0.00 0.00 0.00 1.63
3483 3539 1.000274 GAAACTTTGGCGCTTGATGGT 60.000 47.619 7.64 0.00 0.00 3.55
3484 3540 0.314935 AACTTTGGCGCTTGATGGTG 59.685 50.000 7.64 0.00 0.00 4.17
3494 3550 1.180029 CTTGATGGTGCCTTCCTTGG 58.820 55.000 2.28 0.00 0.00 3.61
3526 3585 2.354109 ATGAGTATGCATCGCGGTAG 57.646 50.000 6.13 0.00 0.00 3.18
3547 3606 2.376109 CGAGGAAGCTGACCCTTACTA 58.624 52.381 6.59 0.00 36.14 1.82
3561 3626 9.720769 CTGACCCTTACTATCAAAAAGAAAGTA 57.279 33.333 0.00 0.00 0.00 2.24
3638 3704 1.354337 CTCGCTGGTGACATCAACCG 61.354 60.000 0.00 2.84 41.51 4.44
3720 3810 0.171455 AGCGACGGTCAGTTCTCATC 59.829 55.000 9.10 0.00 0.00 2.92
3721 3811 1.134530 GCGACGGTCAGTTCTCATCG 61.135 60.000 9.10 0.00 0.00 3.84
3726 3816 1.732732 CGGTCAGTTCTCATCGGACAC 60.733 57.143 0.00 0.00 33.13 3.67
3771 3861 2.030213 ACGATCTAGTTCACGCGTCTAC 59.970 50.000 9.86 10.77 0.00 2.59
3784 3874 1.632948 CGTCTACGCTCTGTCCGTCA 61.633 60.000 0.00 0.00 39.88 4.35
3835 3925 8.893563 TCTTCCCTTATTCCACAATGTTATTT 57.106 30.769 0.00 0.00 0.00 1.40
3836 3926 9.983024 TCTTCCCTTATTCCACAATGTTATTTA 57.017 29.630 0.00 0.00 0.00 1.40
3848 3938 9.921637 CCACAATGTTATTTATTAAGTGTTGGT 57.078 29.630 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.680061 AAGACCAAGACCGTCAGGAC 59.320 55.000 14.85 9.76 41.02 3.85
6 7 0.679505 CAAGACCAAGACCGTCAGGA 59.320 55.000 14.85 0.00 41.02 3.86
7 8 0.393077 ACAAGACCAAGACCGTCAGG 59.607 55.000 0.40 4.97 45.13 3.86
8 9 1.867233 CAACAAGACCAAGACCGTCAG 59.133 52.381 0.40 0.00 32.41 3.51
9 10 1.948104 CAACAAGACCAAGACCGTCA 58.052 50.000 0.40 0.00 32.41 4.35
10 11 0.586802 GCAACAAGACCAAGACCGTC 59.413 55.000 0.00 0.00 0.00 4.79
11 12 0.107410 TGCAACAAGACCAAGACCGT 60.107 50.000 0.00 0.00 0.00 4.83
12 13 1.069022 CATGCAACAAGACCAAGACCG 60.069 52.381 0.00 0.00 0.00 4.79
13 14 1.270550 CCATGCAACAAGACCAAGACC 59.729 52.381 0.00 0.00 0.00 3.85
14 15 1.270550 CCCATGCAACAAGACCAAGAC 59.729 52.381 0.00 0.00 0.00 3.01
15 16 1.144708 TCCCATGCAACAAGACCAAGA 59.855 47.619 0.00 0.00 0.00 3.02
16 17 1.619654 TCCCATGCAACAAGACCAAG 58.380 50.000 0.00 0.00 0.00 3.61
17 18 2.079170 TTCCCATGCAACAAGACCAA 57.921 45.000 0.00 0.00 0.00 3.67
18 19 1.894466 CATTCCCATGCAACAAGACCA 59.106 47.619 0.00 0.00 0.00 4.02
19 20 1.205417 CCATTCCCATGCAACAAGACC 59.795 52.381 0.00 0.00 0.00 3.85
20 21 2.170166 TCCATTCCCATGCAACAAGAC 58.830 47.619 0.00 0.00 0.00 3.01
21 22 2.601240 TCCATTCCCATGCAACAAGA 57.399 45.000 0.00 0.00 0.00 3.02
22 23 3.328505 GTTTCCATTCCCATGCAACAAG 58.671 45.455 0.00 0.00 0.00 3.16
23 24 2.038295 GGTTTCCATTCCCATGCAACAA 59.962 45.455 0.00 0.00 0.00 2.83
24 25 1.622811 GGTTTCCATTCCCATGCAACA 59.377 47.619 0.00 0.00 0.00 3.33
25 26 1.901833 AGGTTTCCATTCCCATGCAAC 59.098 47.619 0.00 0.00 0.00 4.17
26 27 2.323999 AGGTTTCCATTCCCATGCAA 57.676 45.000 0.00 0.00 0.00 4.08
27 28 2.302445 CAAAGGTTTCCATTCCCATGCA 59.698 45.455 0.00 0.00 0.00 3.96
28 29 2.355007 CCAAAGGTTTCCATTCCCATGC 60.355 50.000 0.00 0.00 0.00 4.06
29 30 2.355007 GCCAAAGGTTTCCATTCCCATG 60.355 50.000 0.00 0.00 0.00 3.66
30 31 1.908619 GCCAAAGGTTTCCATTCCCAT 59.091 47.619 0.00 0.00 0.00 4.00
31 32 1.132881 AGCCAAAGGTTTCCATTCCCA 60.133 47.619 0.00 0.00 0.00 4.37
32 33 1.276138 CAGCCAAAGGTTTCCATTCCC 59.724 52.381 0.00 0.00 0.00 3.97
33 34 2.247358 TCAGCCAAAGGTTTCCATTCC 58.753 47.619 0.00 0.00 0.00 3.01
34 35 4.541973 AATCAGCCAAAGGTTTCCATTC 57.458 40.909 0.00 0.00 0.00 2.67
35 36 4.594491 AGAAATCAGCCAAAGGTTTCCATT 59.406 37.500 0.00 0.00 31.02 3.16
36 37 4.162651 AGAAATCAGCCAAAGGTTTCCAT 58.837 39.130 0.00 0.00 31.02 3.41
37 38 3.573967 GAGAAATCAGCCAAAGGTTTCCA 59.426 43.478 0.00 0.00 31.02 3.53
38 39 3.366374 CGAGAAATCAGCCAAAGGTTTCC 60.366 47.826 0.00 0.00 31.02 3.13
39 40 3.366374 CCGAGAAATCAGCCAAAGGTTTC 60.366 47.826 0.00 0.00 0.00 2.78
40 41 2.558359 CCGAGAAATCAGCCAAAGGTTT 59.442 45.455 0.00 0.00 0.00 3.27
41 42 2.162681 CCGAGAAATCAGCCAAAGGTT 58.837 47.619 0.00 0.00 0.00 3.50
42 43 1.614317 CCCGAGAAATCAGCCAAAGGT 60.614 52.381 0.00 0.00 0.00 3.50
43 44 1.098050 CCCGAGAAATCAGCCAAAGG 58.902 55.000 0.00 0.00 0.00 3.11
44 45 1.740025 GTCCCGAGAAATCAGCCAAAG 59.260 52.381 0.00 0.00 0.00 2.77
45 46 1.351017 AGTCCCGAGAAATCAGCCAAA 59.649 47.619 0.00 0.00 0.00 3.28
46 47 0.984230 AGTCCCGAGAAATCAGCCAA 59.016 50.000 0.00 0.00 0.00 4.52
47 48 0.537188 GAGTCCCGAGAAATCAGCCA 59.463 55.000 0.00 0.00 0.00 4.75
48 49 0.179070 GGAGTCCCGAGAAATCAGCC 60.179 60.000 0.00 0.00 0.00 4.85
49 50 3.371087 GGAGTCCCGAGAAATCAGC 57.629 57.895 0.00 0.00 0.00 4.26
69 70 0.032130 TAAGGAGATAAGCGCAGGCG 59.968 55.000 11.47 9.68 46.35 5.52
70 71 1.789506 CTAAGGAGATAAGCGCAGGC 58.210 55.000 11.47 0.00 40.37 4.85
71 72 1.069204 TGCTAAGGAGATAAGCGCAGG 59.931 52.381 11.47 0.00 39.14 4.85
72 73 2.131183 GTGCTAAGGAGATAAGCGCAG 58.869 52.381 11.47 0.00 44.25 5.18
73 74 1.202533 GGTGCTAAGGAGATAAGCGCA 60.203 52.381 11.47 0.00 46.11 6.09
74 75 1.202533 TGGTGCTAAGGAGATAAGCGC 60.203 52.381 0.00 0.00 44.14 5.92
75 76 2.890808 TGGTGCTAAGGAGATAAGCG 57.109 50.000 0.00 0.00 39.14 4.68
76 77 4.770795 TCTTTGGTGCTAAGGAGATAAGC 58.229 43.478 0.00 0.00 36.77 3.09
77 78 5.129485 TCCTCTTTGGTGCTAAGGAGATAAG 59.871 44.000 8.55 0.00 36.26 1.73
78 79 5.030147 TCCTCTTTGGTGCTAAGGAGATAA 58.970 41.667 8.55 0.00 36.26 1.75
79 80 4.620723 TCCTCTTTGGTGCTAAGGAGATA 58.379 43.478 8.55 0.00 36.26 1.98
80 81 3.454858 TCCTCTTTGGTGCTAAGGAGAT 58.545 45.455 8.55 0.00 36.26 2.75
81 82 2.902608 TCCTCTTTGGTGCTAAGGAGA 58.097 47.619 8.55 0.00 36.26 3.71
82 83 3.703001 TTCCTCTTTGGTGCTAAGGAG 57.297 47.619 1.46 1.46 37.43 3.69
83 84 3.137544 TGTTTCCTCTTTGGTGCTAAGGA 59.862 43.478 0.00 0.00 37.07 3.36
84 85 3.486383 TGTTTCCTCTTTGGTGCTAAGG 58.514 45.455 0.00 0.00 37.07 2.69
85 86 4.137543 ACTGTTTCCTCTTTGGTGCTAAG 58.862 43.478 0.00 0.00 37.07 2.18
86 87 4.164843 ACTGTTTCCTCTTTGGTGCTAA 57.835 40.909 0.00 0.00 37.07 3.09
87 88 3.857157 ACTGTTTCCTCTTTGGTGCTA 57.143 42.857 0.00 0.00 37.07 3.49
88 89 2.689983 CAACTGTTTCCTCTTTGGTGCT 59.310 45.455 0.00 0.00 37.07 4.40
89 90 2.427095 ACAACTGTTTCCTCTTTGGTGC 59.573 45.455 0.00 0.00 37.07 5.01
90 91 3.066760 GGACAACTGTTTCCTCTTTGGTG 59.933 47.826 11.87 0.00 37.07 4.17
91 92 3.053619 AGGACAACTGTTTCCTCTTTGGT 60.054 43.478 14.51 0.00 37.77 3.67
92 93 3.555966 AGGACAACTGTTTCCTCTTTGG 58.444 45.455 14.51 0.00 37.77 3.28
93 94 4.211374 CGTAGGACAACTGTTTCCTCTTTG 59.789 45.833 20.18 10.28 41.63 2.77
94 95 4.377897 CGTAGGACAACTGTTTCCTCTTT 58.622 43.478 20.18 6.87 41.63 2.52
95 96 3.802675 GCGTAGGACAACTGTTTCCTCTT 60.803 47.826 20.18 7.12 41.63 2.85
96 97 2.288886 GCGTAGGACAACTGTTTCCTCT 60.289 50.000 20.18 7.32 41.63 3.69
97 98 2.067013 GCGTAGGACAACTGTTTCCTC 58.933 52.381 20.18 13.88 41.63 3.71
98 99 1.270678 GGCGTAGGACAACTGTTTCCT 60.271 52.381 20.33 20.33 44.82 3.36
99 100 1.154197 GGCGTAGGACAACTGTTTCC 58.846 55.000 11.43 11.43 0.00 3.13
100 101 1.154197 GGGCGTAGGACAACTGTTTC 58.846 55.000 0.00 0.00 0.00 2.78
101 102 0.601841 CGGGCGTAGGACAACTGTTT 60.602 55.000 0.00 0.00 0.00 2.83
102 103 1.005394 CGGGCGTAGGACAACTGTT 60.005 57.895 0.00 0.00 0.00 3.16
103 104 2.654877 CGGGCGTAGGACAACTGT 59.345 61.111 0.00 0.00 0.00 3.55
104 105 2.813908 GCGGGCGTAGGACAACTG 60.814 66.667 0.00 0.00 0.00 3.16
105 106 2.995574 AGCGGGCGTAGGACAACT 60.996 61.111 0.00 0.00 0.00 3.16
106 107 2.813908 CAGCGGGCGTAGGACAAC 60.814 66.667 0.00 0.00 0.00 3.32
107 108 4.077184 CCAGCGGGCGTAGGACAA 62.077 66.667 0.00 0.00 0.00 3.18
130 131 3.628646 ATGACGACCAAGGCCAGGC 62.629 63.158 13.73 1.26 0.00 4.85
131 132 1.746615 CATGACGACCAAGGCCAGG 60.747 63.158 5.01 9.48 0.00 4.45
132 133 1.746615 CCATGACGACCAAGGCCAG 60.747 63.158 5.01 0.00 0.00 4.85
133 134 2.350895 CCATGACGACCAAGGCCA 59.649 61.111 5.01 0.00 0.00 5.36
136 137 1.021390 GTGAGCCATGACGACCAAGG 61.021 60.000 0.00 0.00 36.73 3.61
137 138 1.354337 CGTGAGCCATGACGACCAAG 61.354 60.000 0.00 0.00 37.81 3.61
138 139 1.374125 CGTGAGCCATGACGACCAA 60.374 57.895 0.00 0.00 37.81 3.67
139 140 2.261361 CGTGAGCCATGACGACCA 59.739 61.111 0.00 0.00 37.81 4.02
140 141 1.805945 GACGTGAGCCATGACGACC 60.806 63.158 11.17 0.29 38.94 4.79
141 142 0.458543 ATGACGTGAGCCATGACGAC 60.459 55.000 11.17 6.02 38.94 4.34
142 143 0.179137 GATGACGTGAGCCATGACGA 60.179 55.000 11.17 0.00 38.94 4.20
143 144 1.148157 GGATGACGTGAGCCATGACG 61.148 60.000 3.83 0.00 41.41 4.35
144 145 1.148157 CGGATGACGTGAGCCATGAC 61.148 60.000 10.57 0.00 37.93 3.06
145 146 1.141665 CGGATGACGTGAGCCATGA 59.858 57.895 10.57 0.00 37.93 3.07
146 147 0.460109 TTCGGATGACGTGAGCCATG 60.460 55.000 10.57 0.00 44.69 3.66
147 148 0.460284 GTTCGGATGACGTGAGCCAT 60.460 55.000 10.57 0.00 44.69 4.40
148 149 1.080093 GTTCGGATGACGTGAGCCA 60.080 57.895 10.57 0.00 44.69 4.75
149 150 1.810030 GGTTCGGATGACGTGAGCC 60.810 63.158 0.00 0.00 44.69 4.70
150 151 0.802607 GAGGTTCGGATGACGTGAGC 60.803 60.000 0.00 0.00 44.69 4.26
151 152 0.523546 CGAGGTTCGGATGACGTGAG 60.524 60.000 0.00 0.00 44.69 3.51
152 153 1.504900 CGAGGTTCGGATGACGTGA 59.495 57.895 0.00 0.00 44.69 4.35
153 154 2.158959 GCGAGGTTCGGATGACGTG 61.159 63.158 0.00 0.00 44.69 4.49
154 155 2.181021 GCGAGGTTCGGATGACGT 59.819 61.111 0.00 0.00 44.69 4.34
155 156 2.949678 CGCGAGGTTCGGATGACG 60.950 66.667 0.00 0.00 40.84 4.35
156 157 1.586564 CTCGCGAGGTTCGGATGAC 60.587 63.158 28.40 0.00 40.84 3.06
157 158 1.101635 ATCTCGCGAGGTTCGGATGA 61.102 55.000 33.98 13.63 40.84 2.92
158 159 0.936764 CATCTCGCGAGGTTCGGATG 60.937 60.000 33.98 24.22 40.84 3.51
159 160 1.101635 TCATCTCGCGAGGTTCGGAT 61.102 55.000 33.98 17.53 40.84 4.18
160 161 1.715862 CTCATCTCGCGAGGTTCGGA 61.716 60.000 33.98 20.31 40.84 4.55
161 162 1.298713 CTCATCTCGCGAGGTTCGG 60.299 63.158 33.98 17.08 40.84 4.30
162 163 0.590230 GACTCATCTCGCGAGGTTCG 60.590 60.000 33.98 22.22 43.89 3.95
163 164 0.736053 AGACTCATCTCGCGAGGTTC 59.264 55.000 33.98 22.15 34.66 3.62
164 165 1.135257 CAAGACTCATCTCGCGAGGTT 60.135 52.381 33.98 20.04 32.34 3.50
165 166 0.453793 CAAGACTCATCTCGCGAGGT 59.546 55.000 33.98 27.09 32.34 3.85
166 167 0.869454 GCAAGACTCATCTCGCGAGG 60.869 60.000 33.98 20.86 32.34 4.63
167 168 0.179153 TGCAAGACTCATCTCGCGAG 60.179 55.000 30.03 30.03 37.74 5.03
168 169 0.457443 ATGCAAGACTCATCTCGCGA 59.543 50.000 9.26 9.26 37.74 5.87
169 170 2.049959 CTATGCAAGACTCATCTCGCG 58.950 52.381 0.00 0.00 37.74 5.87
170 171 3.361794 TCTATGCAAGACTCATCTCGC 57.638 47.619 0.00 0.00 35.26 5.03
171 172 6.215121 AGATTTCTATGCAAGACTCATCTCG 58.785 40.000 0.00 0.00 32.34 4.04
172 173 6.646240 GGAGATTTCTATGCAAGACTCATCTC 59.354 42.308 19.07 19.07 39.37 2.75
173 174 6.523840 GGAGATTTCTATGCAAGACTCATCT 58.476 40.000 0.00 2.90 36.42 2.90
174 175 5.404968 CGGAGATTTCTATGCAAGACTCATC 59.595 44.000 0.00 0.00 32.51 2.92
175 176 5.295950 CGGAGATTTCTATGCAAGACTCAT 58.704 41.667 0.00 0.00 32.51 2.90
176 177 4.686972 CGGAGATTTCTATGCAAGACTCA 58.313 43.478 0.00 0.00 32.51 3.41
177 178 3.492756 GCGGAGATTTCTATGCAAGACTC 59.507 47.826 0.00 0.00 32.51 3.36
178 179 3.133721 AGCGGAGATTTCTATGCAAGACT 59.866 43.478 0.00 0.00 32.51 3.24
179 180 3.462021 AGCGGAGATTTCTATGCAAGAC 58.538 45.455 0.00 0.00 32.51 3.01
180 181 3.493350 GGAGCGGAGATTTCTATGCAAGA 60.493 47.826 0.00 0.00 0.00 3.02
181 182 2.805099 GGAGCGGAGATTTCTATGCAAG 59.195 50.000 0.00 0.00 0.00 4.01
182 183 2.435805 AGGAGCGGAGATTTCTATGCAA 59.564 45.455 0.00 0.00 0.00 4.08
183 184 2.036475 GAGGAGCGGAGATTTCTATGCA 59.964 50.000 0.00 0.00 0.00 3.96
184 185 2.682836 GAGGAGCGGAGATTTCTATGC 58.317 52.381 0.00 0.00 0.00 3.14
185 186 2.940147 CGAGGAGCGGAGATTTCTATG 58.060 52.381 0.00 0.00 36.03 2.23
202 203 4.504916 CTCACGCTGGCTCCCGAG 62.505 72.222 0.00 0.00 0.00 4.63
205 206 4.154347 CTCCTCACGCTGGCTCCC 62.154 72.222 0.00 0.00 0.00 4.30
206 207 4.154347 CCTCCTCACGCTGGCTCC 62.154 72.222 0.00 0.00 0.00 4.70
207 208 4.828925 GCCTCCTCACGCTGGCTC 62.829 72.222 0.00 0.00 41.92 4.70
229 230 3.655211 ACCAAGGCCTCCTGCAGG 61.655 66.667 27.87 27.87 46.82 4.85
230 231 2.360852 CACCAAGGCCTCCTGCAG 60.361 66.667 5.23 6.78 43.89 4.41
231 232 3.177884 ACACCAAGGCCTCCTGCA 61.178 61.111 5.23 0.00 43.89 4.41
232 233 2.360475 GACACCAAGGCCTCCTGC 60.360 66.667 5.23 0.00 40.16 4.85
233 234 2.046892 CGACACCAAGGCCTCCTG 60.047 66.667 5.23 0.16 32.13 3.86
234 235 2.526873 ACGACACCAAGGCCTCCT 60.527 61.111 5.23 0.00 33.87 3.69
235 236 2.047179 GACGACACCAAGGCCTCC 60.047 66.667 5.23 0.00 0.00 4.30
236 237 2.047179 GGACGACACCAAGGCCTC 60.047 66.667 5.23 0.00 31.31 4.70
237 238 4.003788 CGGACGACACCAAGGCCT 62.004 66.667 0.00 0.00 31.98 5.19
239 240 4.681978 AGCGGACGACACCAAGGC 62.682 66.667 0.00 0.00 0.00 4.35
240 241 2.432628 GAGCGGACGACACCAAGG 60.433 66.667 0.00 0.00 0.00 3.61
241 242 2.805353 CGAGCGGACGACACCAAG 60.805 66.667 0.00 0.00 35.09 3.61
272 273 1.137825 GACTCAAGACCCTCGCGAG 59.862 63.158 29.06 29.06 0.00 5.03
273 274 2.687805 CGACTCAAGACCCTCGCGA 61.688 63.158 9.26 9.26 0.00 5.87
274 275 2.202492 CGACTCAAGACCCTCGCG 60.202 66.667 0.00 0.00 0.00 5.87
275 276 2.182030 CCGACTCAAGACCCTCGC 59.818 66.667 0.00 0.00 0.00 5.03
276 277 1.213013 CACCGACTCAAGACCCTCG 59.787 63.158 0.00 0.00 0.00 4.63
277 278 1.134965 CATCACCGACTCAAGACCCTC 60.135 57.143 0.00 0.00 0.00 4.30
278 279 0.898320 CATCACCGACTCAAGACCCT 59.102 55.000 0.00 0.00 0.00 4.34
279 280 0.741221 GCATCACCGACTCAAGACCC 60.741 60.000 0.00 0.00 0.00 4.46
280 281 0.247736 AGCATCACCGACTCAAGACC 59.752 55.000 0.00 0.00 0.00 3.85
281 282 1.067565 TCAGCATCACCGACTCAAGAC 60.068 52.381 0.00 0.00 0.00 3.01
282 283 1.256812 TCAGCATCACCGACTCAAGA 58.743 50.000 0.00 0.00 0.00 3.02
283 284 2.084610 TTCAGCATCACCGACTCAAG 57.915 50.000 0.00 0.00 0.00 3.02
284 285 2.289631 ACATTCAGCATCACCGACTCAA 60.290 45.455 0.00 0.00 0.00 3.02
285 286 1.276138 ACATTCAGCATCACCGACTCA 59.724 47.619 0.00 0.00 0.00 3.41
286 287 1.662629 CACATTCAGCATCACCGACTC 59.337 52.381 0.00 0.00 0.00 3.36
287 288 1.676916 CCACATTCAGCATCACCGACT 60.677 52.381 0.00 0.00 0.00 4.18
288 289 0.729116 CCACATTCAGCATCACCGAC 59.271 55.000 0.00 0.00 0.00 4.79
289 290 0.392863 CCCACATTCAGCATCACCGA 60.393 55.000 0.00 0.00 0.00 4.69
290 291 1.996786 GCCCACATTCAGCATCACCG 61.997 60.000 0.00 0.00 0.00 4.94
291 292 1.669999 GGCCCACATTCAGCATCACC 61.670 60.000 0.00 0.00 0.00 4.02
292 293 1.811860 GGCCCACATTCAGCATCAC 59.188 57.895 0.00 0.00 0.00 3.06
293 294 1.750018 CGGCCCACATTCAGCATCA 60.750 57.895 0.00 0.00 0.00 3.07
294 295 0.463654 TACGGCCCACATTCAGCATC 60.464 55.000 0.00 0.00 0.00 3.91
295 296 0.748005 GTACGGCCCACATTCAGCAT 60.748 55.000 0.00 0.00 0.00 3.79
296 297 1.376683 GTACGGCCCACATTCAGCA 60.377 57.895 0.00 0.00 0.00 4.41
297 298 2.112815 GGTACGGCCCACATTCAGC 61.113 63.158 0.00 0.00 0.00 4.26
298 299 0.744414 CTGGTACGGCCCACATTCAG 60.744 60.000 0.00 0.00 36.04 3.02
299 300 1.298340 CTGGTACGGCCCACATTCA 59.702 57.895 0.00 0.00 36.04 2.57
300 301 1.451387 CCTGGTACGGCCCACATTC 60.451 63.158 0.00 0.00 36.04 2.67
301 302 2.674754 CCTGGTACGGCCCACATT 59.325 61.111 0.00 0.00 36.04 2.71
302 303 4.109675 GCCTGGTACGGCCCACAT 62.110 66.667 0.00 0.00 40.94 3.21
308 309 2.300850 TATCAACGGCCTGGTACGGC 62.301 60.000 15.29 3.33 44.73 5.68
309 310 0.249322 CTATCAACGGCCTGGTACGG 60.249 60.000 15.29 0.00 0.00 4.02
310 311 0.742505 TCTATCAACGGCCTGGTACG 59.257 55.000 0.00 10.58 0.00 3.67
311 312 1.538419 GCTCTATCAACGGCCTGGTAC 60.538 57.143 0.00 0.00 0.00 3.34
312 313 0.750850 GCTCTATCAACGGCCTGGTA 59.249 55.000 0.00 0.00 0.00 3.25
313 314 1.522569 GCTCTATCAACGGCCTGGT 59.477 57.895 0.00 0.00 0.00 4.00
314 315 1.227674 GGCTCTATCAACGGCCTGG 60.228 63.158 0.00 0.00 41.20 4.45
315 316 0.811616 GTGGCTCTATCAACGGCCTG 60.812 60.000 0.00 0.00 44.36 4.85
316 317 1.264749 TGTGGCTCTATCAACGGCCT 61.265 55.000 0.00 0.00 44.36 5.19
317 318 0.179045 ATGTGGCTCTATCAACGGCC 60.179 55.000 0.00 0.00 44.31 6.13
318 319 1.221414 GATGTGGCTCTATCAACGGC 58.779 55.000 0.00 0.00 0.00 5.68
319 320 1.202417 ACGATGTGGCTCTATCAACGG 60.202 52.381 0.00 0.00 33.11 4.44
320 321 1.854743 CACGATGTGGCTCTATCAACG 59.145 52.381 0.00 0.00 34.52 4.10
346 347 1.971505 TATCCAGACTTGCCAGCCCG 61.972 60.000 0.00 0.00 0.00 6.13
347 348 0.464554 GTATCCAGACTTGCCAGCCC 60.465 60.000 0.00 0.00 0.00 5.19
348 349 0.464554 GGTATCCAGACTTGCCAGCC 60.465 60.000 0.00 0.00 0.00 4.85
349 350 0.464554 GGGTATCCAGACTTGCCAGC 60.465 60.000 0.00 0.00 0.00 4.85
350 351 0.181350 GGGGTATCCAGACTTGCCAG 59.819 60.000 0.00 0.00 35.00 4.85
351 352 0.253160 AGGGGTATCCAGACTTGCCA 60.253 55.000 0.00 0.00 38.24 4.92
352 353 0.919710 AAGGGGTATCCAGACTTGCC 59.080 55.000 0.00 0.00 38.24 4.52
353 354 1.134068 GGAAGGGGTATCCAGACTTGC 60.134 57.143 0.00 0.00 36.92 4.01
354 355 1.490910 GGGAAGGGGTATCCAGACTTG 59.509 57.143 0.00 0.00 38.80 3.16
355 356 1.082194 TGGGAAGGGGTATCCAGACTT 59.918 52.381 0.00 0.00 38.80 3.01
356 357 0.722676 TGGGAAGGGGTATCCAGACT 59.277 55.000 0.00 0.00 38.80 3.24
357 358 3.334769 TGGGAAGGGGTATCCAGAC 57.665 57.895 0.00 0.00 38.80 3.51
359 360 1.490910 GTTCTGGGAAGGGGTATCCAG 59.509 57.143 0.00 0.00 45.92 3.86
360 361 1.591768 GTTCTGGGAAGGGGTATCCA 58.408 55.000 0.00 0.00 38.80 3.41
361 362 0.468648 CGTTCTGGGAAGGGGTATCC 59.531 60.000 0.00 0.00 36.16 2.59
362 363 0.179054 GCGTTCTGGGAAGGGGTATC 60.179 60.000 0.00 0.00 0.00 2.24
363 364 1.632965 GGCGTTCTGGGAAGGGGTAT 61.633 60.000 0.00 0.00 0.00 2.73
364 365 2.295602 GGCGTTCTGGGAAGGGGTA 61.296 63.158 0.00 0.00 0.00 3.69
365 366 3.647771 GGCGTTCTGGGAAGGGGT 61.648 66.667 0.00 0.00 0.00 4.95
366 367 4.778143 CGGCGTTCTGGGAAGGGG 62.778 72.222 0.00 0.00 0.00 4.79
367 368 3.702048 TCGGCGTTCTGGGAAGGG 61.702 66.667 6.85 0.00 0.00 3.95
368 369 2.434359 GTCGGCGTTCTGGGAAGG 60.434 66.667 6.85 0.00 0.00 3.46
369 370 2.027625 GTGTCGGCGTTCTGGGAAG 61.028 63.158 6.85 0.00 0.00 3.46
370 371 2.029964 GTGTCGGCGTTCTGGGAA 59.970 61.111 6.85 0.00 0.00 3.97
371 372 4.351938 CGTGTCGGCGTTCTGGGA 62.352 66.667 6.85 0.00 0.00 4.37
382 383 0.784778 GAACTTCTTCAGCCGTGTCG 59.215 55.000 0.00 0.00 0.00 4.35
383 384 1.149148 GGAACTTCTTCAGCCGTGTC 58.851 55.000 0.00 0.00 0.00 3.67
384 385 0.468226 TGGAACTTCTTCAGCCGTGT 59.532 50.000 0.00 0.00 0.00 4.49
385 386 1.264288 GTTGGAACTTCTTCAGCCGTG 59.736 52.381 0.00 0.00 0.00 4.94
386 387 1.594331 GTTGGAACTTCTTCAGCCGT 58.406 50.000 0.00 0.00 0.00 5.68
397 398 6.413783 AAATTGATTTTACGGGTTGGAACT 57.586 33.333 0.00 0.00 0.00 3.01
405 406 4.976987 ACGTGCTAAATTGATTTTACGGG 58.023 39.130 16.93 2.58 36.08 5.28
466 467 2.036992 GGGTGACATGGAGCATCTCTAG 59.963 54.545 0.00 0.00 33.73 2.43
529 534 4.805219 AGACAAAAGCAACGACAAGTTTT 58.195 34.783 0.00 0.00 42.02 2.43
534 539 2.096819 GTGGAGACAAAAGCAACGACAA 59.903 45.455 0.00 0.00 46.06 3.18
544 549 0.109723 CCCTTCCCGTGGAGACAAAA 59.890 55.000 0.00 0.00 46.06 2.44
545 550 1.758592 CCCTTCCCGTGGAGACAAA 59.241 57.895 0.00 0.00 46.06 2.83
578 583 6.594159 TGCCTTAGTTGAGAGTTAATGTTAGC 59.406 38.462 0.00 0.00 0.00 3.09
579 584 8.443937 GTTGCCTTAGTTGAGAGTTAATGTTAG 58.556 37.037 0.00 0.00 0.00 2.34
580 585 7.117236 CGTTGCCTTAGTTGAGAGTTAATGTTA 59.883 37.037 0.00 0.00 0.00 2.41
581 586 6.073222 CGTTGCCTTAGTTGAGAGTTAATGTT 60.073 38.462 0.00 0.00 0.00 2.71
582 587 5.408604 CGTTGCCTTAGTTGAGAGTTAATGT 59.591 40.000 0.00 0.00 0.00 2.71
583 588 5.671329 GCGTTGCCTTAGTTGAGAGTTAATG 60.671 44.000 0.00 0.00 0.00 1.90
584 589 4.392138 GCGTTGCCTTAGTTGAGAGTTAAT 59.608 41.667 0.00 0.00 0.00 1.40
585 590 3.744426 GCGTTGCCTTAGTTGAGAGTTAA 59.256 43.478 0.00 0.00 0.00 2.01
586 591 3.243941 TGCGTTGCCTTAGTTGAGAGTTA 60.244 43.478 0.00 0.00 0.00 2.24
674 679 2.124693 CGTCCTGCTCCTCCTCCTC 61.125 68.421 0.00 0.00 0.00 3.71
675 680 2.043450 CGTCCTGCTCCTCCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
676 681 3.151022 CCGTCCTGCTCCTCCTCC 61.151 72.222 0.00 0.00 0.00 4.30
686 691 4.722700 CAGGGGTTGGCCGTCCTG 62.723 72.222 15.74 15.74 37.69 3.86
808 813 7.281841 ACACAGGATTTCAATCAAACCAAAAT 58.718 30.769 2.04 0.00 37.15 1.82
809 814 6.648192 ACACAGGATTTCAATCAAACCAAAA 58.352 32.000 2.04 0.00 37.15 2.44
810 815 6.232581 ACACAGGATTTCAATCAAACCAAA 57.767 33.333 2.04 0.00 37.15 3.28
811 816 5.867903 ACACAGGATTTCAATCAAACCAA 57.132 34.783 2.04 0.00 37.15 3.67
812 817 5.867903 AACACAGGATTTCAATCAAACCA 57.132 34.783 2.04 0.00 37.15 3.67
813 818 6.981722 ACTAACACAGGATTTCAATCAAACC 58.018 36.000 2.04 0.00 37.15 3.27
816 821 8.956426 GGAATACTAACACAGGATTTCAATCAA 58.044 33.333 2.04 0.00 37.98 2.57
817 822 7.556275 GGGAATACTAACACAGGATTTCAATCA 59.444 37.037 2.04 0.00 37.98 2.57
818 823 7.013369 GGGGAATACTAACACAGGATTTCAATC 59.987 40.741 0.00 0.00 37.98 2.67
819 824 6.833933 GGGGAATACTAACACAGGATTTCAAT 59.166 38.462 0.00 0.00 37.98 2.57
820 825 6.184789 GGGGAATACTAACACAGGATTTCAA 58.815 40.000 0.00 0.00 37.98 2.69
821 826 5.251932 TGGGGAATACTAACACAGGATTTCA 59.748 40.000 0.00 0.00 37.98 2.69
822 827 5.751586 TGGGGAATACTAACACAGGATTTC 58.248 41.667 0.00 0.00 37.98 2.17
1188 1208 2.416296 CGTGAGCATACCGAAACCACTA 60.416 50.000 0.00 0.00 0.00 2.74
1189 1209 1.671850 CGTGAGCATACCGAAACCACT 60.672 52.381 0.00 0.00 0.00 4.00
1197 1217 0.389391 AGGGAATCGTGAGCATACCG 59.611 55.000 0.00 0.00 0.00 4.02
1211 1231 0.951558 GCAGCGAACAAAAGAGGGAA 59.048 50.000 0.00 0.00 0.00 3.97
1239 1259 4.876701 TGCTTTTCACGAGCAGGT 57.123 50.000 0.00 0.00 44.63 4.00
1262 1282 0.317938 GTTCGAGCGACACTGACACT 60.318 55.000 0.00 0.00 0.00 3.55
1307 1327 1.066002 CAGCCACCACAAGAAACACTG 59.934 52.381 0.00 0.00 0.00 3.66
1326 1346 0.473694 TCCTTCCCAGTGCCTCTTCA 60.474 55.000 0.00 0.00 0.00 3.02
1335 1355 4.021925 GGCACGCTCCTTCCCAGT 62.022 66.667 0.00 0.00 0.00 4.00
1470 1490 1.153429 GGCGATGCTAAACCGGTCT 60.153 57.895 8.04 0.00 0.00 3.85
1567 1587 6.093771 AGAGAGAAAATGATAAGCAGCACTTG 59.906 38.462 0.00 0.00 39.58 3.16
1575 1595 6.344500 TCAGGACAGAGAGAAAATGATAAGC 58.656 40.000 0.00 0.00 0.00 3.09
1581 1601 5.545588 TGAACTCAGGACAGAGAGAAAATG 58.454 41.667 0.00 0.00 38.98 2.32
1835 1855 9.959721 ACAGTACAGATTAAAATTCCAGTGTAT 57.040 29.630 0.00 0.00 0.00 2.29
1993 2017 0.940519 TTCTGCACAAAAGCGCATGC 60.941 50.000 11.47 7.91 37.54 4.06
2063 2090 8.231304 ACTTATTTTCATTTGAAAGTGCATCG 57.769 30.769 10.30 0.00 43.90 3.84
2428 2463 7.118723 TGATATGAAGTTGTGGCTATTTTCCT 58.881 34.615 0.00 0.00 0.00 3.36
2625 2662 9.562408 TTAAACAAGAGGATACATGTACACAAA 57.438 29.630 7.96 0.00 41.41 2.83
3134 3173 1.004610 GTGCAACATGGATCATCGTCG 60.005 52.381 0.00 0.00 36.32 5.12
3162 3201 8.495949 CAAATACACCACCGTGATATATCTTTC 58.504 37.037 13.79 4.20 43.14 2.62
3211 3250 3.739300 CGCTCGACTTCTCCAAGTTAAAA 59.261 43.478 0.00 0.00 43.37 1.52
3213 3252 2.925306 GCGCTCGACTTCTCCAAGTTAA 60.925 50.000 0.00 0.00 43.37 2.01
3483 3539 2.397044 AAATGAACCCAAGGAAGGCA 57.603 45.000 0.00 0.00 0.00 4.75
3484 3540 3.769739 AAAAATGAACCCAAGGAAGGC 57.230 42.857 0.00 0.00 0.00 4.35
3526 3585 0.460459 GTAAGGGTCAGCTTCCTCGC 60.460 60.000 4.92 0.00 32.02 5.03
3532 3591 6.779860 TCTTTTTGATAGTAAGGGTCAGCTT 58.220 36.000 0.00 0.00 0.00 3.74
3547 3606 6.267699 CCCCCTCTGTTTACTTTCTTTTTGAT 59.732 38.462 0.00 0.00 0.00 2.57
3653 3719 0.322008 CTGCCCAAAGTCCTGGACTC 60.322 60.000 28.46 16.33 42.59 3.36
3726 3816 3.100207 ACCATCCTACAACCAATTGGG 57.900 47.619 27.89 13.83 40.42 4.12
3736 3826 5.443283 ACTAGATCGTACAACCATCCTACA 58.557 41.667 0.00 0.00 0.00 2.74
3737 3827 6.039047 TGAACTAGATCGTACAACCATCCTAC 59.961 42.308 0.00 0.00 0.00 3.18
3771 3861 0.179127 ATCACATGACGGACAGAGCG 60.179 55.000 0.00 0.00 0.00 5.03
3775 3865 2.368655 TGTGATCACATGACGGACAG 57.631 50.000 24.56 0.00 36.21 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.